Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252390 | KEH38308.1 | 77.551 | 147 | 7 | 1 | 39 | 159 | 240 | 386 | 3.50e-65 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252390 | sp|B9F3B6|SSDH_ORYSJ | 61.224 | 147 | 31 | 1 | 39 | 159 | 247 | 393 | 6.03e-53 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252390 | A0A072VAA5 | 77.551 | 147 | 7 | 1 | 39 | 159 | 240 | 386 | 1.67e-65 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094100 | Msa1252390 | 0.802287 | 6.026326e-49 | -8.615850e-47 |
| Msa0623080 | Msa1252390 | 0.821238 | 4.490826e-53 | -8.615850e-47 |
| Msa0653020 | Msa1252390 | 0.824563 | 7.543636e-54 | -8.615850e-47 |
| Msa0657670 | Msa1252390 | 0.800429 | 1.447323e-48 | -8.615850e-47 |
| Msa0670000 | Msa1252390 | 0.801443 | 8.983009e-49 | -8.615850e-47 |
| Msa0679930 | Msa1252390 | 0.819755 | 9.833649e-53 | -8.615850e-47 |
| Msa0679990 | Msa1252390 | 0.814742 | 1.319747e-51 | -8.615850e-47 |
| Msa0688550 | Msa1252390 | 0.818793 | 1.628276e-52 | -8.615850e-47 |
| Msa0715720 | Msa1252390 | 0.805180 | 1.511998e-49 | -8.615850e-47 |
| Msa0725220 | Msa1252390 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0736060 | Msa1252390 | 0.828496 | 8.705420e-55 | -8.615850e-47 |
| Msa0801760 | Msa1252390 | 0.821151 | 4.701647e-53 | -8.615850e-47 |
| Msa0802470 | Msa1252390 | -0.808862 | 2.513678e-50 | -8.615850e-47 |
| Msa0812990 | Msa1252390 | 0.817853 | 2.658929e-52 | -8.615850e-47 |
| Msa0815180 | Msa1252390 | 0.817859 | 2.649639e-52 | -8.615850e-47 |
| Msa0838940 | Msa1252390 | 0.818328 | 2.075735e-52 | -8.615850e-47 |
| Msa0839330 | Msa1252390 | 0.818297 | 2.109949e-52 | -8.615850e-47 |
| Msa0128020 | Msa1252390 | 0.813522 | 2.453008e-51 | -8.615850e-47 |
| Msa0171300 | Msa1252390 | 0.819274 | 1.265621e-52 | -8.615850e-47 |
| Msa0223410 | Msa1252390 | -0.820781 | 5.722571e-53 | -8.615850e-47 |
| Msa1228210 | Msa1252390 | 0.824821 | 6.558377e-54 | -8.615850e-47 |
| Msa1252390 | Msa1264020 | 0.817262 | 3.613414e-52 | -8.615850e-47 |
| Msa1252390 | Msa1271280 | 0.832975 | 6.953123e-56 | -8.615850e-47 |
| Msa1252390 | Msa1296960 | -0.802370 | 5.794568e-49 | -8.615850e-47 |
| Msa1252390 | Msa1314640 | 0.803017 | 4.260251e-49 | -8.615850e-47 |
| Msa1252390 | Msa1322890 | 0.803123 | 4.050646e-49 | -8.615850e-47 |
| Msa1252390 | Msa1324760 | 0.833054 | 6.648136e-56 | -8.615850e-47 |
| Msa1252390 | Msa1324780 | 0.807831 | 4.171090e-50 | -8.615850e-47 |
| Msa1252390 | Msa1367080 | 0.839124 | 1.910938e-57 | -8.615850e-47 |
| Msa1252390 | Msa1369530 | 0.800776 | 1.229519e-48 | -8.615850e-47 |
| Msa1252390 | Msa1378760 | 0.810270 | 1.252802e-50 | -8.615850e-47 |
| Msa1252390 | Msa1411070 | 0.815593 | 8.540626e-52 | -8.615850e-47 |
| Msa1252390 | Msa1438270 | 0.810330 | 1.216473e-50 | -8.615850e-47 |
| Msa1252390 | Msa1464940 | 0.817000 | 4.136849e-52 | -8.615850e-47 |
| Msa0419990 | Msa1252390 | 0.809229 | 2.097453e-50 | -8.615850e-47 |
| Msa0465930 | Msa1252390 | 0.823114 | 1.648866e-53 | -8.615850e-47 |
| Msa0465970 | Msa1252390 | 0.812819 | 3.498538e-51 | -8.615850e-47 |
| Msa0480980 | Msa1252390 | 0.811284 | 7.561170e-51 | -8.615850e-47 |
| Msa0991670 | Msa1252390 | 0.822541 | 2.241408e-53 | -8.615850e-47 |
| Msa1014540 | Msa1252390 | 0.805425 | 1.343134e-49 | -8.615850e-47 |
| Msa1023400 | Msa1252390 | 0.804174 | 2.451629e-49 | -8.615850e-47 |
| Msa1036390 | Msa1252390 | 0.804029 | 2.627644e-49 | -8.615850e-47 |
| Msa1042710 | Msa1252390 | 0.972116 | 3.039352e-134 | -8.615850e-47 |
| Msa1075220 | Msa1252390 | -0.813681 | 2.263184e-51 | -8.615850e-47 |
| Msa1076450 | Msa1252390 | 0.822501 | 2.289900e-53 | -8.615850e-47 |
| Msa1102140 | Msa1252390 | 0.832397 | 9.677724e-56 | -8.615850e-47 |
| Msa0265820 | Msa1252390 | 0.800836 | 1.195575e-48 | -8.615850e-47 |
| Msa0269360 | Msa1252390 | 0.817960 | 2.514970e-52 | -8.615850e-47 |
| Msa0270440 | Msa1252390 | -0.828959 | 6.724880e-55 | -8.615850e-47 |
| Msa0309080 | Msa1252390 | -0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0342340 | Msa1252390 | -0.805599 | 1.234991e-49 | -8.615850e-47 |
| Msa0344830 | Msa1252390 | 0.807839 | 4.154948e-50 | -8.615850e-47 |
| Msa0356560 | Msa1252390 | 0.803109 | 4.077453e-49 | -8.615850e-47 |
| Msa1116130 | Msa1252390 | -0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa1134450 | Msa1252390 | 0.812588 | 3.931790e-51 | -8.615850e-47 |
| Msa1177060 | Msa1252390 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa1189430 | Msa1252390 | 0.804288 | 2.320940e-49 | -8.615850e-47 |
| Msa1222970 | Msa1252390 | 0.844930 | 5.571768e-59 | -8.615850e-47 |
| Msa0524890 | Msa1252390 | -0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0533070 | Msa1252390 | 0.810668 | 1.028014e-50 | -8.615850e-47 |
| Msa0537720 | Msa1252390 | 0.801967 | 7.014319e-49 | -8.615850e-47 |
| Msa0540070 | Msa1252390 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0548950 | Msa1252390 | 0.804599 | 1.999425e-49 | -8.615850e-47 |
| Msa0566500 | Msa1252390 | -0.809520 | 1.817245e-50 | -8.615850e-47 |
| Msa0581760 | Msa1252390 | 0.831454 | 1.654471e-55 | -8.615850e-47 |
| Msa0599890 | Msa1252390 | 0.805889 | 1.073343e-49 | -8.615850e-47 |
| Msa0844900 | Msa1252390 | 0.831743 | 1.403930e-55 | -8.615850e-47 |
| Msa0845370 | Msa1252390 | 0.814317 | 1.638486e-51 | -8.615850e-47 |
| Msa0845590 | Msa1252390 | -0.810656 | 1.034316e-50 | -8.615850e-47 |
| Msa0853540 | Msa1252390 | 0.812070 | 5.101578e-51 | -8.615850e-47 |
| Msa0876850 | Msa1252390 | -0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0885270 | Msa1252390 | 0.800338 | 1.510425e-48 | -8.615850e-47 |
| Msa0886330 | Msa1252390 | -0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0956390 | Msa1252390 | 0.800055 | 1.724642e-48 | -8.615850e-47 |
| Msa0961420 | Msa1252390 | -0.805874 | 1.081438e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252390 | MtrunA17_Chr2g0310091 | 77.551 | 147 | 7 | 1 | 39 | 159 | 255 | 401 | 4.10e-69 | 218 |
| Msa1252390 | MtrunA17_Chr8g0390631 | 41.000 | 100 | 59 | 0 | 60 | 159 | 257 | 356 | 2.79e-20 | 86.3 |
| Msa1252390 | MtrunA17_Chr6g0485301 | 39.796 | 98 | 59 | 0 | 61 | 158 | 266 | 363 | 9.10e-19 | 82.0 |
| Msa1252390 | MtrunA17_Chr4g0059521 | 29.252 | 147 | 78 | 1 | 39 | 159 | 209 | 355 | 8.13e-18 | 79.3 |
| Msa1252390 | MtrunA17_Chr8g0390651 | 39.000 | 100 | 61 | 0 | 60 | 159 | 266 | 365 | 8.37e-18 | 79.3 |
| Msa1252390 | MtrunA17_Chr3g0118081 | 31.293 | 147 | 75 | 1 | 39 | 159 | 239 | 385 | 2.46e-17 | 78.2 |
| Msa1252390 | MtrunA17_Chr3g0118121 | 30.612 | 147 | 76 | 1 | 39 | 159 | 209 | 355 | 1.69e-16 | 75.5 |
| Msa1252390 | MtrunA17_Chr4g0059221 | 33.099 | 142 | 68 | 1 | 39 | 153 | 259 | 400 | 1.35e-14 | 70.1 |
| Msa1252390 | MtrunA17_Chr6g0485311 | 42.424 | 99 | 57 | 0 | 61 | 159 | 264 | 362 | 4.20e-14 | 68.6 |
| Msa1252390 | MtrunA17_Chr3g0117861 | 33.099 | 142 | 68 | 1 | 39 | 153 | 257 | 398 | 4.80e-14 | 68.6 |
| Msa1252390 | MtrunA17_Chr8g0365221 | 36.559 | 93 | 59 | 0 | 61 | 153 | 305 | 397 | 6.04e-12 | 62.4 |
| Msa1252390 | MtrunA17_Chr1g0149961 | 28.472 | 144 | 79 | 2 | 39 | 159 | 216 | 358 | 4.36e-11 | 60.1 |
| Msa1252390 | MtrunA17_Chr4g0074171 | 27.778 | 144 | 80 | 2 | 39 | 159 | 216 | 358 | 7.39e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252390 | AT1G79440.1 | 61.224 | 147 | 31 | 1 | 39 | 159 | 246 | 392 | 1.75e-53 | 177 |
| Msa1252390 | AT3G24503.1 | 39.000 | 100 | 61 | 0 | 60 | 159 | 264 | 363 | 1.83e-18 | 81.6 |
| Msa1252390 | AT3G48170.1 | 37.374 | 99 | 62 | 0 | 61 | 159 | 257 | 355 | 7.26e-18 | 80.1 |
| Msa1252390 | AT1G74920.2 | 30.612 | 147 | 76 | 1 | 39 | 159 | 204 | 350 | 4.57e-16 | 74.7 |
| Msa1252390 | AT1G74920.1 | 30.612 | 147 | 76 | 1 | 39 | 159 | 209 | 355 | 5.30e-16 | 74.7 |
| Msa1252390 | AT3G48000.1 | 40.860 | 93 | 55 | 0 | 61 | 153 | 302 | 394 | 1.42e-14 | 70.5 |
| Msa1252390 | AT1G23800.1 | 37.634 | 93 | 58 | 0 | 61 | 153 | 298 | 390 | 5.59e-13 | 65.9 |
| Msa1252390 | AT2G24270.2 | 28.472 | 144 | 79 | 2 | 39 | 159 | 256 | 398 | 1.66e-12 | 64.7 |
| Msa1252390 | AT2G24270.4 | 28.472 | 144 | 79 | 2 | 39 | 159 | 216 | 358 | 1.68e-12 | 64.7 |
| Msa1252390 | AT2G24270.3 | 28.472 | 144 | 79 | 2 | 39 | 159 | 216 | 358 | 1.84e-12 | 64.3 |
| Msa1252390 | AT2G24270.1 | 28.472 | 144 | 79 | 2 | 39 | 159 | 216 | 358 | 1.84e-12 | 64.3 |
| Msa1252390 | AT1G23800.2 | 42.857 | 77 | 44 | 0 | 61 | 137 | 298 | 374 | 2.71e-12 | 63.9 |
| Msa1252390 | AT1G54100.2 | 34.314 | 102 | 67 | 0 | 58 | 159 | 260 | 361 | 7.26e-12 | 62.8 |
| Msa1252390 | AT1G54100.1 | 34.314 | 102 | 67 | 0 | 58 | 159 | 260 | 361 | 7.26e-12 | 62.8 |
Find 69 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGGTGCTACTCGTAAT+TGG | 0.275266 | 8_2:-49311698 | Msa1252390:CDS |
| TGCACAAAATTCTCACGTTT+TGG | 0.288056 | 8_2:-49307963 | Msa1252390:three_prime_UTR |
| GAGACGACCTGGAATTGATT+TGG | 0.291099 | 8_2:+49311767 | None:intergenic |
| AATCGCACTTCCCTTCGATT+TGG | 0.297132 | 8_2:-49311715 | Msa1252390:CDS |
| CACATGTTTGTCCGCTATTA+CGG | 0.300469 | 8_2:+49309098 | None:intergenic |
| AACATAACTAGATCAAATTT+AGG | 0.301558 | 8_2:-49308144 | Msa1252390:intron |
| TTGATCTAGTTATGTTAAAC+TGG | 0.314993 | 8_2:+49308151 | None:intergenic |
| ATCGCACTTCCCTTCGATTT+GGG | 0.318047 | 8_2:-49311714 | Msa1252390:CDS |
| AGACGACCTGGAATTGATTT+GGG | 0.326010 | 8_2:+49311768 | None:intergenic |
| AGTTGAAAGAGGAGAGTGAC+AGG | 0.329567 | 8_2:-49308198 | Msa1252390:three_prime_UTR |
| TTTAAAATTCTAGGTATCTC+TGG | 0.329976 | 8_2:-49310347 | Msa1252390:intron |
| TTTCTTATGTGGAGAGAAAT+TGG | 0.331298 | 8_2:-49307832 | Msa1252390:three_prime_UTR |
| ATGGGACATGCTCCTGATAT+TGG | 0.345256 | 8_2:-49310719 | Msa1252390:CDS |
| GGGTGTTGTGAATGTGGTTA+TGG | 0.352862 | 8_2:-49310738 | Msa1252390:CDS |
| ATTAAAGTGTCTCCAATATC+AGG | 0.378701 | 8_2:+49310707 | None:intergenic |
| GACCTTAACTCTTGATATCA+AGG | 0.381207 | 8_2:-49307753 | Msa1252390:three_prime_UTR |
| CTCTTTGTTGTTCCCGTCGT+CGG | 0.382885 | 8_2:-49311653 | Msa1252390:CDS |
| TACTCGTAATTGGATCAAAT+TGG | 0.388383 | 8_2:-49311688 | Msa1252390:CDS |
| CAACCCTACACTGATTGAAT+TGG | 0.389944 | 8_2:-49307790 | Msa1252390:three_prime_UTR |
| AATCGATTTCGGAATGGATA+AGG | 0.393065 | 8_2:+49311796 | None:intergenic |
| ATATTATTTGGTTGAATGAA+TGG | 0.397786 | 8_2:-49307654 | Msa1252390:three_prime_UTR |
| GTGAAAATTTGTATGAGAGT+TGG | 0.407867 | 8_2:+49311824 | None:intergenic |
| GCAAGACACCAGCTCTTGTT+TGG | 0.410701 | 8_2:+49307983 | None:intergenic |
| ATCCTTGATATCAAGAGTTA+AGG | 0.432723 | 8_2:+49307751 | None:intergenic |
| TGCAAGAAGGTAAGAACAAT+GGG | 0.435486 | 8_2:-49308012 | Msa1252390:three_prime_UTR |
| TACGAGTAGGTGCCGACGAC+GGG | 0.436149 | 8_2:+49311641 | None:intergenic |
| AGGGAAGTGCGATTAAGTTC+AGG | 0.439628 | 8_2:+49311724 | None:intergenic |
| TTTGGGGTGAGAATCGATTT+CGG | 0.441959 | 8_2:+49311785 | None:intergenic |
| TGATTTAGCATCGTGAATCA+AGG | 0.468574 | 8_2:+49308326 | None:intergenic |
| TCTCACCCCAAATCAATTCC+AGG | 0.468964 | 8_2:-49311774 | Msa1252390:five_prime_UTR |
| TTCTCTGCCTTACCAACAAA+AGG | 0.471837 | 8_2:+49308220 | None:intergenic |
| ATCGATTTCGGAATGGATAA+GGG | 0.472415 | 8_2:+49311797 | None:intergenic |
| GGTGTTGTGAATGTGGTTAT+GGG | 0.475898 | 8_2:-49310737 | Msa1252390:CDS |
| AATAGAATTCTTGTGCAAGA+AGG | 0.488408 | 8_2:-49309067 | Msa1252390:intron |
| TGGCTTCAGGGAATAGGGAT+AGG | 0.495330 | 8_2:-49307943 | Msa1252390:three_prime_UTR |
| CACTTTAATCGCGAGTCCAC+AGG | 0.497613 | 8_2:-49310693 | Msa1252390:intron |
| TACACTGATTGAATTGGCAT+TGG | 0.499282 | 8_2:-49307784 | Msa1252390:three_prime_UTR |
| TTCCTTTCACTGCAACATCC+AGG | 0.503148 | 8_2:+49310281 | None:intergenic |
| TTCTAGGTATCTCTGGAACT+TGG | 0.506384 | 8_2:-49310340 | Msa1252390:intron |
| GATTCACGATGCTAAATCAA+AGG | 0.516164 | 8_2:-49308322 | Msa1252390:intron |
| GATGTAGGGTGTTGTGAATG+TGG | 0.522853 | 8_2:-49310744 | Msa1252390:intron |
| GGGAAGTGCGATTAAGTTCA+GGG | 0.530679 | 8_2:+49311725 | None:intergenic |
| GAGAAATTGGTGTTATGTTG+TGG | 0.533429 | 8_2:-49307819 | Msa1252390:three_prime_UTR |
| CAGAGTATGAAAGTTGGAGA+TGG | 0.536021 | 8_2:-49308796 | Msa1252390:CDS |
| AACAGCATCGAGCAATGCAT+TGG | 0.536232 | 8_2:+49308819 | None:intergenic |
| TAAGGCAGAGAAGTTGAAAG+AGG | 0.537111 | 8_2:-49308209 | Msa1252390:three_prime_UTR |
| GAATGTTACTAAATGCAAGA+AGG | 0.554834 | 8_2:-49308025 | Msa1252390:three_prime_UTR |
| CACATTACAACAGCTGACAC+AGG | 0.563827 | 8_2:+49307689 | None:intergenic |
| TAGGTATCTCTGGAACTTGG+CGG | 0.565756 | 8_2:-49310337 | Msa1252390:CDS |
| ATGCAAGAAGGTAAGAACAA+TGG | 0.567203 | 8_2:-49308013 | Msa1252390:three_prime_UTR |
| GGAGGGTACCAAACAAGAGC+TGG | 0.568226 | 8_2:-49307991 | Msa1252390:three_prime_UTR |
| GCTGTTCAGAGTATGAAAGT+TGG | 0.571841 | 8_2:-49308802 | Msa1252390:CDS |
| ACGAGTAGCACCCAAATCGA+AGG | 0.573294 | 8_2:+49311704 | None:intergenic |
| TCAAGAGTTAAGGTCAAATG+AGG | 0.585953 | 8_2:+49307761 | None:intergenic |
| GCGATTAAGTTCAGGGAAGG+AGG | 0.588769 | 8_2:+49311732 | None:intergenic |
| AATGCCAATTCAATCAGTGT+AGG | 0.589809 | 8_2:+49307786 | None:intergenic |
| TGTATGAGAGTTGGATTGTG+TGG | 0.589899 | 8_2:+49311833 | None:intergenic |
| ATGCCAATTCAATCAGTGTA+GGG | 0.590654 | 8_2:+49307787 | None:intergenic |
| ATCTTGAGTTTGAGACGACC+TGG | 0.597231 | 8_2:+49311756 | None:intergenic |
| GGTGAGAATCGATTTCGGAA+TGG | 0.617154 | 8_2:+49311790 | None:intergenic |
| GACCTGGATGTTGCAGTGAA+AGG | 0.620334 | 8_2:-49310283 | Msa1252390:CDS |
| CGAGTAGCACCCAAATCGAA+GGG | 0.625565 | 8_2:+49311705 | None:intergenic |
| GCAGCAAAGTTCCGTAATAG+CGG | 0.634199 | 8_2:-49309109 | Msa1252390:CDS |
| AGTGCGATTAAGTTCAGGGA+AGG | 0.641608 | 8_2:+49311729 | None:intergenic |
| TTACGAGTAGGTGCCGACGA+CGG | 0.648744 | 8_2:+49311640 | None:intergenic |
| GACGACCTGGAATTGATTTG+GGG | 0.659495 | 8_2:+49311769 | None:intergenic |
| AAGAAGGTAAGAACAATGGG+AGG | 0.660720 | 8_2:-49308009 | Msa1252390:three_prime_UTR |
| ACATTACAACAGCTGACACA+GGG | 0.668437 | 8_2:+49307690 | None:intergenic |
| AGAAGGTAAGAACAATGGGA+GGG | 0.695594 | 8_2:-49308008 | Msa1252390:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATCATTATATTCATA+TGG | - | chr8_2:49309078-49309097 | Msa1252390:CDS | 10.0% |
| !! | TTTAAAAAATGCATATATAA+GGG | + | chr8_2:49309112-49309131 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAATGCATATATA+AGG | + | chr8_2:49309113-49309132 | None:intergenic | 10.0% |
| !!! | ATGATTTTCATATAATTATT+TGG | + | chr8_2:49309367-49309386 | None:intergenic | 10.0% |
| !! | ATAATAATAAAATAGAGAGA+GGG | + | chr8_2:49307861-49307880 | None:intergenic | 15.0% |
| !! | AATAATAATAAAATAGAGAG+AGG | + | chr8_2:49307862-49307881 | None:intergenic | 15.0% |
| !!! | ATCTTACTTATTTTTTAACT+AGG | - | chr8_2:49307959-49307978 | Msa1252390:three_prime_UTR | 15.0% |
| !!! | TCTTACTTATTTTTTAACTA+GGG | - | chr8_2:49307960-49307979 | Msa1252390:three_prime_UTR | 15.0% |
| !!! | TATGCATTTTTTAAAATTCT+AGG | - | chr8_2:49309117-49309136 | Msa1252390:intron | 15.0% |
| !!! | ATTTTCATATAATTATTTGG+AGG | + | chr8_2:49309364-49309383 | None:intergenic | 15.0% |
| !! | AAAGAAAAGAAAATAACAAA+AGG | + | chr8_2:49310061-49310080 | None:intergenic | 15.0% |
| !! | TAATGCAATAAAATTGAATT+TGG | - | chr8_2:49310235-49310254 | Msa1252390:intron | 15.0% |
| !! | AATGCAATAAAATTGAATTT+GGG | - | chr8_2:49310236-49310255 | Msa1252390:intron | 15.0% |
| !! | CAATTAGTATTTATAAATTG+GGG | + | chr8_2:49310516-49310535 | None:intergenic | 15.0% |
| !! | CCAATTAGTATTTATAAATT+GGG | + | chr8_2:49310517-49310536 | None:intergenic | 15.0% |
| !! | TCCAATTAGTATTTATAAAT+TGG | + | chr8_2:49310518-49310537 | None:intergenic | 15.0% |
| !! | AAACAAATAATGTATCTAAA+TGG | + | chr8_2:49310568-49310587 | None:intergenic | 15.0% |
| !! | GAATATAAAATATAGTTACA+GGG | + | chr8_2:49310966-49310985 | None:intergenic | 15.0% |
| !! | TGAATATAAAATATAGTTAC+AGG | + | chr8_2:49310967-49310986 | None:intergenic | 15.0% |
| !! | CAAATTAAAGTAAACTAATA+TGG | + | chr8_2:49311357-49311376 | None:intergenic | 15.0% |
| !!! | CATATTAGTTTACTTTAATT+TGG | - | chr8_2:49311355-49311374 | Msa1252390:intron | 15.0% |
| !!! | TTTGTTGTTTTGATATTATT+TGG | - | chr8_2:49311807-49311826 | Msa1252390:five_prime_UTR | 15.0% |
| !!! | TAATTTTTGTTGATTGAGTT+TGG | - | chr8_2:49308006-49308025 | Msa1252390:three_prime_UTR | 20.0% |
| !! | ATCATCAAATAATAAACTTC+AGG | + | chr8_2:49308712-49308731 | None:intergenic | 20.0% |
| !!! | AGTTTATTATTTGATGATGT+AGG | - | chr8_2:49308714-49308733 | Msa1252390:intron | 20.0% |
| !!! | GTTTATTATTTGATGATGTA+GGG | - | chr8_2:49308715-49308734 | Msa1252390:intron | 20.0% |
| !! | TAATTGCTTCTTAATTCAAT+TGG | + | chr8_2:49308814-49308833 | None:intergenic | 20.0% |
| !! | AAGAAATTATAACCTTCTAT+AGG | - | chr8_2:49308862-49308881 | Msa1252390:intron | 20.0% |
| !!! | TTCCTCATTATTTATTTTGT+AGG | - | chr8_2:49309004-49309023 | Msa1252390:intron | 20.0% |
| !!! | TAGTATGTAAATCTTTTTTC+TGG | - | chr8_2:49309431-49309450 | Msa1252390:intron | 20.0% |
| !! | TAACACTAAACAATAGATAT+TGG | - | chr8_2:49309588-49309607 | Msa1252390:intron | 20.0% |
| !! | TAAAAATAAACAAATATGCC+CGG | + | chr8_2:49309798-49309817 | None:intergenic | 20.0% |
| !!! | AAGGTATTTATTTAAGAGTT+GGG | + | chr8_2:49309866-49309885 | None:intergenic | 20.0% |
| !!! | AAAGGTATTTATTTAAGAGT+TGG | + | chr8_2:49309867-49309886 | None:intergenic | 20.0% |
| !!! | TGTTTTGATTTTCAATATAG+AGG | - | chr8_2:49310147-49310166 | Msa1252390:intron | 20.0% |
| !! | TTATTGCATTATTCATCATA+GGG | + | chr8_2:49310226-49310245 | None:intergenic | 20.0% |
| !! | TTTATTGCATTATTCATCAT+AGG | + | chr8_2:49310227-49310246 | None:intergenic | 20.0% |
| !!! | AAAATTGAATTTGGGTTTTT+TGG | - | chr8_2:49310244-49310263 | Msa1252390:intron | 20.0% |
| !! | CCCAATTTATAAATACTAAT+TGG | - | chr8_2:49310514-49310533 | Msa1252390:intron | 20.0% |
| !! | TAAAAAACACATAAATGTCT+GGG | + | chr8_2:49311223-49311242 | None:intergenic | 20.0% |
| !! | AACATAACTAGATCAAATTT+AGG | - | chr8_2:49311329-49311348 | Msa1252390:intron | 20.0% |
| !! | ATATTATTTGGTTGAATGAA+TGG | - | chr8_2:49311819-49311838 | Msa1252390:five_prime_UTR | 20.0% |
| ! | TTCCTTAATATTGAGTTTGA+AGG | - | chr8_2:49308137-49308156 | Msa1252390:intron | 25.0% |
| !! | AAGACTTGTGTATTTGAAAT+GGG | + | chr8_2:49308535-49308554 | None:intergenic | 25.0% |
| ! | AAAGACTTGTGTATTTGAAA+TGG | + | chr8_2:49308536-49308555 | None:intergenic | 25.0% |
| ! | TACATAATGTAAATCTGAAG+TGG | - | chr8_2:49308597-49308616 | Msa1252390:intron | 25.0% |
| !! | AAATACTAAGTTGGATTCTT+AGG | - | chr8_2:49308633-49308652 | Msa1252390:intron | 25.0% |
| ! | ATTATAACCTTCTATAGGTA+AGG | - | chr8_2:49308867-49308886 | Msa1252390:intron | 25.0% |
| !!! | CTCTTAATTTTAACCACATT+TGG | - | chr8_2:49308974-49308993 | Msa1252390:intron | 25.0% |
| ! | AGCCTACAAAATAAATAATG+AGG | + | chr8_2:49309009-49309028 | None:intergenic | 25.0% |
| ! | AAATCAACATAGGAAATCTA+TGG | + | chr8_2:49309042-49309061 | None:intergenic | 25.0% |
| ! | CATTGAGAAAAAATCAACAT+AGG | + | chr8_2:49309052-49309071 | None:intergenic | 25.0% |
| !! | TTTAAAATTCTAGGTATCTC+TGG | - | chr8_2:49309126-49309145 | Msa1252390:intron | 25.0% |
| ! | GGAGTTATCATAAAAAATTC+GGG | + | chr8_2:49309308-49309327 | None:intergenic | 25.0% |
| ! | CGGAGTTATCATAAAAAATT+CGG | + | chr8_2:49309309-49309328 | None:intergenic | 25.0% |
| !!! | AATTTTAGAAGTGAATGTTC+TGG | - | chr8_2:49309651-49309670 | Msa1252390:intron | 25.0% |
| ! | AAAAATAAACAAATATGCCC+GGG | + | chr8_2:49309797-49309816 | None:intergenic | 25.0% |
| !! | GTTATAATTGAACTACCTTT+TGG | - | chr8_2:49310032-49310051 | Msa1252390:intron | 25.0% |
| ! | AATAACAAAAGGTTACCAAA+AGG | + | chr8_2:49310050-49310069 | None:intergenic | 25.0% |
| ! | AAGAGAAAAGATCTACAAAT+TGG | + | chr8_2:49310084-49310103 | None:intergenic | 25.0% |
| ! | TTTGGTAAAATTGAAAGTTG+AGG | - | chr8_2:49310262-49310281 | Msa1252390:intron | 25.0% |
| ! | TATTTAACCAATTCATGTGA+AGG | - | chr8_2:49310614-49310633 | Msa1252390:intron | 25.0% |
| ! | ATATATACCTTCACATGAAT+TGG | + | chr8_2:49310624-49310643 | None:intergenic | 25.0% |
| !!! | TCACAAATATAGAGTACTTT+TGG | - | chr8_2:49310826-49310845 | Msa1252390:intron | 25.0% |
| ! | TATAAAATATAGTTACAGGG+TGG | + | chr8_2:49310963-49310982 | None:intergenic | 25.0% |
| ! | CTAAAAAACACATAAATGTC+TGG | + | chr8_2:49311224-49311243 | None:intergenic | 25.0% |
| !!! | CAGACATTTATGTGTTTTTT+AGG | - | chr8_2:49311222-49311241 | Msa1252390:intron | 25.0% |
| !!! | TTTATGTGTTTTTTAGGACT+AGG | - | chr8_2:49311228-49311247 | Msa1252390:intron | 25.0% |
| ! | TTGATCTAGTTATGTTAAAC+TGG | + | chr8_2:49311325-49311344 | None:intergenic | 25.0% |
| !!! | TCATGTATTTGATTTGATGA+CGG | - | chr8_2:49311388-49311407 | Msa1252390:intron | 25.0% |
| !! | TAGTTATAGCAGAACATTTT+TGG | - | chr8_2:49311415-49311434 | Msa1252390:intron | 25.0% |
| !! | AGTTATAGCAGAACATTTTT+GGG | - | chr8_2:49311416-49311435 | Msa1252390:intron | 25.0% |
| GTGAAAATTTGTATGAGAGT+TGG | + | chr8_2:49307652-49307671 | None:intergenic | 30.0% | |
| TACTCGTAATTGGATCAAAT+TGG | - | chr8_2:49307785-49307804 | Msa1252390:three_prime_UTR | 30.0% | |
| !!! | TTTGATTTTGCGGTTTTGAA+CGG | - | chr8_2:49307931-49307950 | Msa1252390:three_prime_UTR | 30.0% |
| ! | TTTGTTGATTGAGTTTGGTT+AGG | - | chr8_2:49308011-49308030 | Msa1252390:three_prime_UTR | 30.0% |
| !! | TCGTTGATTTCGAATGAATT+TGG | - | chr8_2:49308098-49308117 | Msa1252390:intron | 30.0% |
| ATTGAAGTTGCTAACATTCT+AGG | - | chr8_2:49308221-49308240 | Msa1252390:three_prime_UTR | 30.0% | |
| GTTAGTAAGAGATACAATCA+AGG | + | chr8_2:49308486-49308505 | None:intergenic | 30.0% | |
| TCATACTGTAGTATACATTG+TGG | - | chr8_2:49308508-49308527 | Msa1252390:intron | 30.0% | |
| TAGAATGCATTTAACGTTCA+TGG | - | chr8_2:49308570-49308589 | Msa1252390:intron | 30.0% | |
| ! | ATTAAAGTGTCTCCAATATC+AGG | + | chr8_2:49308769-49308788 | None:intergenic | 30.0% |
| GATGTTCAGTTGCATTTAAA+GGG | + | chr8_2:49308837-49308856 | None:intergenic | 30.0% | |
| AGATGTTCAGTTGCATTTAA+AGG | + | chr8_2:49308838-49308857 | None:intergenic | 30.0% | |
| TAATCTTCCTTACCTATAGA+AGG | + | chr8_2:49308877-49308896 | None:intergenic | 30.0% | |
| TCTGTAAGCTGTTATTATAC+AGG | - | chr8_2:49309263-49309282 | Msa1252390:intron | 30.0% | |
| CTGTAAGCTGTTATTATACA+GGG | - | chr8_2:49309264-49309283 | Msa1252390:intron | 30.0% | |
| ! | TTTTTATGATAACTCCGTTG+TGG | - | chr8_2:49309312-49309331 | Msa1252390:intron | 30.0% |
| AATACGAGTATTATCCACAA+CGG | + | chr8_2:49309329-49309348 | None:intergenic | 30.0% | |
| ATTAATCCAATGCTGAAAAG+TGG | - | chr8_2:49309401-49309420 | Msa1252390:intron | 30.0% | |
| TAGACATAAACTTCCATTTC+TGG | + | chr8_2:49309545-49309564 | None:intergenic | 30.0% | |
| ! | CTGCGATTAAATTTGAAACT+AGG | + | chr8_2:49309687-49309706 | None:intergenic | 30.0% |
| AGAACATTCACTGTTATTCT+AGG | + | chr8_2:49309770-49309789 | None:intergenic | 30.0% | |
| TAGAATAACAGTGAATGTTC+TGG | - | chr8_2:49309769-49309788 | Msa1252390:intron | 30.0% | |
| ! | CACAAGTTTGACTAGTTAAA+AGG | + | chr8_2:49309885-49309904 | None:intergenic | 30.0% |
| AATAGAATTCTTGTGCAAGA+AGG | - | chr8_2:49310406-49310425 | Msa1252390:intron | 30.0% | |
| TTGTTGGCATAAAGGAAATA+CGG | + | chr8_2:49310751-49310770 | None:intergenic | 30.0% | |
| TATTTCCTTTATGCCAACAA+TGG | - | chr8_2:49310751-49310770 | Msa1252390:intron | 30.0% | |
| AATTTCCATTGTTGGCATAA+AGG | + | chr8_2:49310759-49310778 | None:intergenic | 30.0% | |
| ATTTAGGCAATTTCCATTGT+TGG | + | chr8_2:49310767-49310786 | None:intergenic | 30.0% | |
| !! | GAGATAGCTCTAGAAAAATA+GGG | + | chr8_2:49310900-49310919 | None:intergenic | 30.0% |
| !! | AGAGATAGCTCTAGAAAAAT+AGG | + | chr8_2:49310901-49310920 | None:intergenic | 30.0% |
| CAATGAAGCTACTGTAAAAA+AGG | - | chr8_2:49311009-49311028 | Msa1252390:intron | 30.0% | |
| AAAATCATAAGCAAACCAAG+AGG | + | chr8_2:49311112-49311131 | None:intergenic | 30.0% | |
| ! | TTGCTTATGATTTTCCTTAC+AGG | - | chr8_2:49311118-49311137 | Msa1252390:intron | 30.0% |
| GAATGTTACTAAATGCAAGA+AGG | - | chr8_2:49311448-49311467 | Msa1252390:intron | 30.0% | |
| TTTCTTATGTGGAGAGAAAT+TGG | - | chr8_2:49311641-49311660 | Msa1252390:intron | 30.0% | |
| ATCCTTGATATCAAGAGTTA+AGG | + | chr8_2:49311725-49311744 | None:intergenic | 30.0% | |
| ! | ATCGATTTCGGAATGGATAA+GGG | + | chr8_2:49307679-49307698 | None:intergenic | 35.0% |
| ! | AATCGATTTCGGAATGGATA+AGG | + | chr8_2:49307680-49307699 | None:intergenic | 35.0% |
| !! | ACGAGCTAGATTTGATTTTG+CGG | - | chr8_2:49307921-49307940 | Msa1252390:three_prime_UTR | 35.0% |
| ATTGAGTTTGGTTAGGAGAA+AGG | - | chr8_2:49308018-49308037 | Msa1252390:three_prime_UTR | 35.0% | |
| TTGAGTTTGGTTAGGAGAAA+GGG | - | chr8_2:49308019-49308038 | Msa1252390:three_prime_UTR | 35.0% | |
| CGCCTTCAAACTCAATATTA+AGG | + | chr8_2:49308142-49308161 | None:intergenic | 35.0% | |
| GAGAAAGAGAAAGCTTCTTT+CGG | - | chr8_2:49308293-49308312 | Msa1252390:intron | 35.0% | |
| !! | TGTACATTTTCAAGCTTGGA+TGG | + | chr8_2:49308356-49308375 | None:intergenic | 35.0% |
| !! | CAGATGTACATTTTCAAGCT+TGG | + | chr8_2:49308360-49308379 | None:intergenic | 35.0% |
| CAAGCTTGAAAATGTACATC+TGG | - | chr8_2:49308358-49308377 | Msa1252390:intron | 35.0% | |
| GTCGAAGAGAAATACTAAGT+TGG | - | chr8_2:49308624-49308643 | Msa1252390:intron | 35.0% | |
| GTAAGGAAGATTACATTCAC+TGG | - | chr8_2:49308884-49308903 | Msa1252390:intron | 35.0% | |
| GAGGAAACAAATACCAAATG+TGG | + | chr8_2:49308990-49309009 | None:intergenic | 35.0% | |
| ATTTCCTACAAGAACTGCAA+GGG | + | chr8_2:49309519-49309538 | None:intergenic | 35.0% | |
| TGTAGGAAATCTACCAGAAA+TGG | - | chr8_2:49309529-49309548 | Msa1252390:intron | 35.0% | |
| GGAAGTTTATGTCTATGTGT+TGG | - | chr8_2:49309550-49309569 | Msa1252390:intron | 35.0% | |
| ! | TATGTGTTGGTATCAATGTG+AGG | - | chr8_2:49309563-49309582 | Msa1252390:intron | 35.0% |
| ! | ATGTGTTGGTATCAATGTGA+GGG | - | chr8_2:49309564-49309583 | Msa1252390:intron | 35.0% |
| ! | AAATTTGAAACTAGGACGTG+CGG | + | chr8_2:49309679-49309698 | None:intergenic | 35.0% |
| TATTTAAGAGTTGGGCTGAT+TGG | + | chr8_2:49309858-49309877 | None:intergenic | 35.0% | |
| CATTATGTAGCATCTTCAGT+TGG | - | chr8_2:49309920-49309939 | Msa1252390:intron | 35.0% | |
| GGATTGAATGTGTAGATATG+TGG | - | chr8_2:49310168-49310187 | Msa1252390:intron | 35.0% | |
| TGAATGTGTAGATATGTGGT+TGG | - | chr8_2:49310172-49310191 | Msa1252390:intron | 35.0% | |
| GAATGTGTAGATATGTGGTT+GGG | - | chr8_2:49310173-49310192 | Msa1252390:intron | 35.0% | |
| ! | TGTGAATTTAGGATTCTCTC+AGG | - | chr8_2:49310292-49310311 | Msa1252390:CDS | 35.0% |
| AAACAGTCAAACAGAGTTTG+GGG | + | chr8_2:49310483-49310502 | None:intergenic | 35.0% | |
| CAAACAGTCAAACAGAGTTT+GGG | + | chr8_2:49310484-49310503 | None:intergenic | 35.0% | |
| ACAAACAGTCAAACAGAGTT+TGG | + | chr8_2:49310485-49310504 | None:intergenic | 35.0% | |
| ! | ATGGTGATGCAATGCAATTT+AGG | + | chr8_2:49310783-49310802 | None:intergenic | 35.0% |
| CACATACTGAGTGAGAAAAA+TGG | + | chr8_2:49310802-49310821 | None:intergenic | 35.0% | |
| ! | TTTTCTATATGCACCGTTAC+AGG | - | chr8_2:49311055-49311074 | Msa1252390:intron | 35.0% |
| TTTCTATATGCACCGTTACA+GGG | - | chr8_2:49311056-49311075 | Msa1252390:intron | 35.0% | |
| ! | CTTATGATTTTCCTTACAGG+TGG | - | chr8_2:49311121-49311140 | Msa1252390:intron | 35.0% |
| TGATTTAGCATCGTGAATCA+AGG | + | chr8_2:49311150-49311169 | None:intergenic | 35.0% | |
| GATTCACGATGCTAAATCAA+AGG | - | chr8_2:49311151-49311170 | Msa1252390:intron | 35.0% | |
| GACTGGTAGAATAGAAAAGA+TGG | + | chr8_2:49311181-49311200 | None:intergenic | 35.0% | |
| AAAACACATAAATGTCTGGG+AGG | + | chr8_2:49311220-49311239 | None:intergenic | 35.0% | |
| !!! | GAACATTTTTGGGTCACATT+TGG | - | chr8_2:49311426-49311445 | Msa1252390:intron | 35.0% |
| ATGCAAGAAGGTAAGAACAA+TGG | - | chr8_2:49311460-49311479 | Msa1252390:intron | 35.0% | |
| TGCAAGAAGGTAAGAACAAT+GGG | - | chr8_2:49311461-49311480 | Msa1252390:intron | 35.0% | |
| ! | TGCACAAAATTCTCACGTTT+TGG | - | chr8_2:49311510-49311529 | Msa1252390:intron | 35.0% |
| !! | GAGAAATTGGTGTTATGTTG+TGG | - | chr8_2:49311654-49311673 | Msa1252390:CDS | 35.0% |
| ATGCCAATTCAATCAGTGTA+GGG | + | chr8_2:49311689-49311708 | None:intergenic | 35.0% | |
| AATGCCAATTCAATCAGTGT+AGG | + | chr8_2:49311690-49311709 | None:intergenic | 35.0% | |
| ! | TACACTGATTGAATTGGCAT+TGG | - | chr8_2:49311689-49311708 | Msa1252390:CDS | 35.0% |
| TCAAGAGTTAAGGTCAAATG+AGG | + | chr8_2:49311715-49311734 | None:intergenic | 35.0% | |
| GACCTTAACTCTTGATATCA+AGG | - | chr8_2:49311720-49311739 | Msa1252390:CDS | 35.0% | |
| TGTATGAGAGTTGGATTGTG+TGG | + | chr8_2:49307643-49307662 | None:intergenic | 40.0% | |
| ! | TTTGGGGTGAGAATCGATTT+CGG | + | chr8_2:49307691-49307710 | None:intergenic | 40.0% |
| ! | AGACGACCTGGAATTGATTT+GGG | + | chr8_2:49307708-49307727 | None:intergenic | 40.0% |
| !! | ATTTGGGTGCTACTCGTAAT+TGG | - | chr8_2:49307775-49307794 | Msa1252390:three_prime_UTR | 40.0% |
| !!! | TTTTGCGGTTTTGAACGGTT+TGG | - | chr8_2:49307936-49307955 | Msa1252390:three_prime_UTR | 40.0% |
| TCGTCCATTGTCTATGTATG+TGG | - | chr8_2:49308179-49308198 | Msa1252390:three_prime_UTR | 40.0% | |
| TCCATTGTCTATGTATGTGG+TGG | - | chr8_2:49308182-49308201 | Msa1252390:three_prime_UTR | 40.0% | |
| ACCACCACATACATAGACAA+TGG | + | chr8_2:49308186-49308205 | None:intergenic | 40.0% | |
| AGAAAGCTTCTTTCGGTGAT+TGG | - | chr8_2:49308300-49308319 | Msa1252390:intron | 40.0% | |
| ! | GGTGTTGTGAATGTGGTTAT+GGG | - | chr8_2:49308736-49308755 | Msa1252390:intron | 40.0% |
| ! | TCAATTGGTGATAGAACCTG+TGG | + | chr8_2:49308799-49308818 | None:intergenic | 40.0% |
| !! | GATTACATTCACTGGCTCAA+CGG | - | chr8_2:49308892-49308911 | Msa1252390:intron | 40.0% |
| GGCTGTTGGAAAGAAATTGA+TGG | - | chr8_2:49308913-49308932 | Msa1252390:intron | 40.0% | |
| ! | GTTGGAAAGAAATTGATGGC+AGG | - | chr8_2:49308917-49308936 | Msa1252390:intron | 40.0% |
| !! | TTCTAGGTATCTCTGGAACT+TGG | - | chr8_2:49309133-49309152 | Msa1252390:intron | 40.0% |
| GCATCGTCAAAAACTATGCA+TGG | + | chr8_2:49309169-49309188 | None:intergenic | 40.0% | |
| CAATGCTGAAAAGTGGATGA+GGG | - | chr8_2:49309408-49309427 | Msa1252390:intron | 40.0% | |
| ! | CTCCATGTTTTTCTTCTGCA+AGG | - | chr8_2:49309468-49309487 | Msa1252390:intron | 40.0% |
| GTCCTTGCAGAAGAAAAACA+TGG | + | chr8_2:49309473-49309492 | None:intergenic | 40.0% | |
| TTTCCTACAAGAACTGCAAG+GGG | + | chr8_2:49309518-49309537 | None:intergenic | 40.0% | |
| GATTTCCTACAAGAACTGCA+AGG | + | chr8_2:49309520-49309539 | None:intergenic | 40.0% | |
| !! | ATTGGTGTTAGCTTGTTTGC+TGG | - | chr8_2:49309606-49309625 | Msa1252390:intron | 40.0% |
| !! | TTGGTGTTAGCTTGTTTGCT+GGG | - | chr8_2:49309607-49309626 | Msa1252390:intron | 40.0% |
| TCAAATTTAATCGCAGCTGC+TGG | - | chr8_2:49309691-49309710 | Msa1252390:intron | 40.0% | |
| CTGATTGGCACTGTTATTCT+AGG | + | chr8_2:49309843-49309862 | None:intergenic | 40.0% | |
| GAGGTGCATGTTGTGAATTT+AGG | - | chr8_2:49310281-49310300 | Msa1252390:CDS | 40.0% | |
| TACTAGTTGACCAAAGCAGA+AGG | + | chr8_2:49310318-49310337 | None:intergenic | 40.0% | |
| CACATGTTTGTCCGCTATTA+CGG | + | chr8_2:49310378-49310397 | None:intergenic | 40.0% | |
| GCTGTTCAGAGTATGAAAGT+TGG | - | chr8_2:49310671-49310690 | Msa1252390:intron | 40.0% | |
| CAGAGTATGAAAGTTGGAGA+TGG | - | chr8_2:49310677-49310696 | Msa1252390:intron | 40.0% | |
| !!! | GTTGGAGATGGTTTTAGTGA+AGG | - | chr8_2:49310689-49310708 | Msa1252390:intron | 40.0% |
| !! | TTTTAGTGAAGGTGTAGCTC+AGG | - | chr8_2:49310700-49310719 | Msa1252390:CDS | 40.0% |
| ! | TATAAGTTTCCACGAGTTGG+AGG | + | chr8_2:49311087-49311106 | None:intergenic | 40.0% |
| GCATATAAGTTTCCACGAGT+TGG | + | chr8_2:49311090-49311109 | None:intergenic | 40.0% | |
| GTGGAAACTTATATGCCTCT+TGG | - | chr8_2:49311094-49311113 | Msa1252390:intron | 40.0% | |
| AATCAAGGATTCCACCTGTA+AGG | + | chr8_2:49311135-49311154 | None:intergenic | 40.0% | |
| GATGAAATGGAGAATCAGAC+TGG | + | chr8_2:49311198-49311217 | None:intergenic | 40.0% | |
| AAATGTCTGGGAGGATGAAA+TGG | + | chr8_2:49311211-49311230 | None:intergenic | 40.0% | |
| TTCTCTGCCTTACCAACAAA+AGG | + | chr8_2:49311256-49311275 | None:intergenic | 40.0% | |
| TAAGGCAGAGAAGTTGAAAG+AGG | - | chr8_2:49311264-49311283 | Msa1252390:intron | 40.0% | |
| AAGAAGGTAAGAACAATGGG+AGG | - | chr8_2:49311464-49311483 | Msa1252390:intron | 40.0% | |
| AGAAGGTAAGAACAATGGGA+GGG | - | chr8_2:49311465-49311484 | Msa1252390:intron | 40.0% | |
| !!! | AATTCTCACGTTTTGGCTTC+AGG | - | chr8_2:49311517-49311536 | Msa1252390:intron | 40.0% |
| !!! | ATTCTCACGTTTTGGCTTCA+GGG | - | chr8_2:49311518-49311537 | Msa1252390:intron | 40.0% |
| !! | CGCGTGTTTGTTTTCTTATG+TGG | - | chr8_2:49311630-49311649 | Msa1252390:intron | 40.0% |
| ! | CAACCCTACACTGATTGAAT+TGG | - | chr8_2:49311683-49311702 | Msa1252390:CDS | 40.0% |
| ACATTACAACAGCTGACACA+GGG | + | chr8_2:49311786-49311805 | None:intergenic | 40.0% | |
| ! | GGTGAGAATCGATTTCGGAA+TGG | + | chr8_2:49307686-49307705 | None:intergenic | 45.0% |
| TCTCACCCCAAATCAATTCC+AGG | - | chr8_2:49307699-49307718 | Msa1252390:three_prime_UTR | 45.0% | |
| !! | GACGACCTGGAATTGATTTG+GGG | + | chr8_2:49307707-49307726 | None:intergenic | 45.0% |
| GAGACGACCTGGAATTGATT+TGG | + | chr8_2:49307709-49307728 | None:intergenic | 45.0% | |
| ! | ATCTTGAGTTTGAGACGACC+TGG | + | chr8_2:49307720-49307739 | None:intergenic | 45.0% |
| AGTGCGATTAAGTTCAGGGA+AGG | + | chr8_2:49307747-49307766 | None:intergenic | 45.0% | |
| ! | GGGAAGTGCGATTAAGTTCA+GGG | + | chr8_2:49307751-49307770 | None:intergenic | 45.0% |
| ! | AGGGAAGTGCGATTAAGTTC+AGG | + | chr8_2:49307752-49307771 | None:intergenic | 45.0% |
| AATCGCACTTCCCTTCGATT+TGG | - | chr8_2:49307758-49307777 | Msa1252390:three_prime_UTR | 45.0% | |
| ATCGCACTTCCCTTCGATTT+GGG | - | chr8_2:49307759-49307778 | Msa1252390:three_prime_UTR | 45.0% | |
| AGAGAGAGGGAATTACGAGT+AGG | + | chr8_2:49307848-49307867 | None:intergenic | 45.0% | |
| ! | TGTATGTGGTGGTGCTTCAT+AGG | - | chr8_2:49308193-49308212 | Msa1252390:three_prime_UTR | 45.0% |
| ! | ACATCTGGAGCTTACTTGTG+AGG | - | chr8_2:49308373-49308392 | Msa1252390:intron | 45.0% |
| !! | GATGTAGGGTGTTGTGAATG+TGG | - | chr8_2:49308729-49308748 | Msa1252390:intron | 45.0% |
| ! | GGGTGTTGTGAATGTGGTTA+TGG | - | chr8_2:49308735-49308754 | Msa1252390:intron | 45.0% |
| ATGGGACATGCTCCTGATAT+TGG | - | chr8_2:49308754-49308773 | Msa1252390:intron | 45.0% | |
| !! | TAGGTATCTCTGGAACTTGG+CGG | - | chr8_2:49309136-49309155 | Msa1252390:intron | 45.0% |
| ! | AGTTTTTGACGATGCTGACC+TGG | - | chr8_2:49309174-49309193 | Msa1252390:intron | 45.0% |
| TTCCTTTCACTGCAACATCC+AGG | + | chr8_2:49309195-49309214 | None:intergenic | 45.0% | |
| !! | CCTCATCCACTTTTCAGCAT+TGG | + | chr8_2:49309410-49309429 | None:intergenic | 45.0% |
| CCAATGCTGAAAAGTGGATG+AGG | - | chr8_2:49309407-49309426 | Msa1252390:intron | 45.0% | |
| AAACCCCTTGCAGTTCTTGT+AGG | - | chr8_2:49309512-49309531 | Msa1252390:intron | 45.0% | |
| !! | ACAGTGAATGTTCTGGTTCC+CGG | - | chr8_2:49309776-49309795 | Msa1252390:intron | 45.0% |
| TGGTTGGGAGAATTCAGCAT+GGG | - | chr8_2:49310188-49310207 | Msa1252390:intron | 45.0% | |
| GCAGCAAAGTTCCGTAATAG+CGG | - | chr8_2:49310364-49310383 | Msa1252390:intron | 45.0% | |
| AGTCAAACAGAGTTTGGGGA+TGG | + | chr8_2:49310479-49310498 | None:intergenic | 45.0% | |
| ! | AACAGCATCGAGCAATGCAT+TGG | + | chr8_2:49310657-49310676 | None:intergenic | 45.0% |
| TTGGAGGAGAATCCCTGTAA+CGG | + | chr8_2:49311071-49311090 | None:intergenic | 45.0% | |
| ! | TAGGACTAGGCTCCTTTTGT+TGG | - | chr8_2:49311241-49311260 | Msa1252390:intron | 45.0% |
| ! | CTAGGCTCCTTTTGTTGGTA+AGG | - | chr8_2:49311246-49311265 | Msa1252390:intron | 45.0% |
| AGTTGAAAGAGGAGAGTGAC+AGG | - | chr8_2:49311275-49311294 | Msa1252390:intron | 45.0% | |
| !!! | ACGTTTTGGCTTCAGGGAAT+AGG | - | chr8_2:49311524-49311543 | Msa1252390:intron | 45.0% |
| !!! | CGTTTTGGCTTCAGGGAATA+GGG | - | chr8_2:49311525-49311544 | Msa1252390:intron | 45.0% |
| CACATTACAACAGCTGACAC+AGG | + | chr8_2:49311787-49311806 | None:intergenic | 45.0% | |
| !!! | ATATAAAAATTATGATATTT+TGG | - | chr8_2:49308399-49308418 | Msa1252390:intron | 5.0% |
| GCGATTAAGTTCAGGGAAGG+AGG | + | chr8_2:49307744-49307763 | None:intergenic | 50.0% | |
| CGAGTAGCACCCAAATCGAA+GGG | + | chr8_2:49307771-49307790 | None:intergenic | 50.0% | |
| ACGAGTAGCACCCAAATCGA+AGG | + | chr8_2:49307772-49307791 | None:intergenic | 50.0% | |
| !! | CTCTTTGTTGTTCCCGTCGT+CGG | - | chr8_2:49307820-49307839 | Msa1252390:three_prime_UTR | 50.0% |
| CACTTTAATCGCGAGTCCAC+AGG | - | chr8_2:49308780-49308799 | Msa1252390:CDS | 50.0% | |
| ! | GATGGCAGGTTTTGCTGAGA+CGG | - | chr8_2:49308931-49308950 | Msa1252390:intron | 50.0% |
| GACCTGGATGTTGCAGTGAA+AGG | - | chr8_2:49309190-49309209 | Msa1252390:intron | 50.0% | |
| !!! | CAGCTGCTGGTTTTGTCTGA+GGG | - | chr8_2:49309704-49309723 | Msa1252390:intron | 50.0% |
| !!! | AGCTGCTGGTTTTGTCTGAG+GGG | - | chr8_2:49309705-49309724 | Msa1252390:intron | 50.0% |
| !! | CAGTGAATGTTCTGGTTCCC+GGG | - | chr8_2:49309777-49309796 | Msa1252390:intron | 50.0% |
| GTGGTTGGGAGAATTCAGCA+TGG | - | chr8_2:49310187-49310206 | Msa1252390:intron | 50.0% | |
| TTCTCTCAGGCCTTCTGCTT+TGG | - | chr8_2:49310305-49310324 | Msa1252390:CDS | 50.0% | |
| ! | AGTGAAGGTGTAGCTCAGGT+AGG | - | chr8_2:49310704-49310723 | Msa1252390:CDS | 50.0% |
| GCAAGACACCAGCTCTTGTT+TGG | + | chr8_2:49311493-49311512 | None:intergenic | 50.0% | |
| TGGCTTCAGGGAATAGGGAT+AGG | - | chr8_2:49311530-49311549 | Msa1252390:intron | 50.0% | |
| !! | TTACGAGTAGGTGCCGACGA+CGG | + | chr8_2:49307836-49307855 | None:intergenic | 55.0% |
| !! | TTCACTGGCTCAACGGCTGT+TGG | - | chr8_2:49308899-49308918 | Msa1252390:intron | 55.0% |
| ! | AGCTTGTTTGCTGGGCTTGC+TGG | - | chr8_2:49309615-49309634 | Msa1252390:intron | 55.0% |
| ! | GCTTGTTTGCTGGGCTTGCT+GGG | - | chr8_2:49309616-49309635 | Msa1252390:intron | 55.0% |
| !!! | GCAGCTGCTGGTTTTGTCTG+AGG | - | chr8_2:49309703-49309722 | Msa1252390:intron | 55.0% |
| TTGCTGCAAGCTGCACACAC+AGG | + | chr8_2:49310351-49310370 | None:intergenic | 55.0% | |
| AGGGATTCTCCTCCAACTCG+TGG | - | chr8_2:49311075-49311094 | Msa1252390:intron | 55.0% | |
| !! | GGAGGGTACCAAACAAGAGC+TGG | - | chr8_2:49311482-49311501 | Msa1252390:intron | 55.0% |
| !! | TACGAGTAGGTGCCGACGAC+GGG | + | chr8_2:49307835-49307854 | None:intergenic | 60.0% |
| !! | TTTGCTGGGCTTGCTGGGCT+AGG | - | chr8_2:49309621-49309640 | Msa1252390:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 49307640 | 49311855 | 49307640 | ID=Msa1252390;Name=Msa1252390 |
| chr8_2 | mRNA | 49307640 | 49311855 | 49307640 | ID=Msa1252390-mRNA-1;Parent=Msa1252390;Name=Msa1252390-mRNA-1;_AED=0.30;_eAED=0.30;_QI=98|0.87|1|1|0.75|0.77|9|530|160 |
| chr8_2 | exon | 49307640 | 49308068 | 49307640 | ID=Msa1252390-mRNA-1:exon:14925;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49308145 | 49308251 | 49308145 | ID=Msa1252390-mRNA-1:exon:14924;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49308323 | 49308355 | 49308323 | ID=Msa1252390-mRNA-1:exon:14923;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49308465 | 49308497 | 49308465 | ID=Msa1252390-mRNA-1:exon:14922;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49308774 | 49308859 | 49308774 | ID=Msa1252390-mRNA-1:exon:14921;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49309068 | 49309134 | 49309068 | ID=Msa1252390-mRNA-1:exon:14920;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49310279 | 49310356 | 49310279 | ID=Msa1252390-mRNA-1:exon:14919;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49310694 | 49310759 | 49310694 | ID=Msa1252390-mRNA-1:exon:14918;Parent=Msa1252390-mRNA-1 |
| chr8_2 | exon | 49311644 | 49311855 | 49311644 | ID=Msa1252390-mRNA-1:exon:14917;Parent=Msa1252390-mRNA-1 |
| chr8_2 | five_prime_UTR | 49311758 | 49311855 | 49311758 | ID=Msa1252390-mRNA-1:five_prime_utr;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49311644 | 49311757 | 49311644 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49310694 | 49310759 | 49310694 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49310279 | 49310356 | 49310279 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49309068 | 49309134 | 49309068 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49308774 | 49308859 | 49308774 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49308465 | 49308497 | 49308465 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49308323 | 49308355 | 49308323 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | CDS | 49308246 | 49308251 | 49308246 | ID=Msa1252390-mRNA-1:cds;Parent=Msa1252390-mRNA-1 |
| chr8_2 | three_prime_UTR | 49308145 | 49308245 | 49308145 | ID=Msa1252390-mRNA-1:three_prime_utr;Parent=Msa1252390-mRNA-1 |
| chr8_2 | three_prime_UTR | 49307640 | 49308068 | 49307640 | ID=Msa1252390-mRNA-1:three_prime_utr;Parent=Msa1252390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
