Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551020 | AES89310.1 | 91.250 | 320 | 19 | 1 | 1 | 311 | 1 | 320 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551020 | sp|E7C196|MER_ERYCB | 59.568 | 324 | 115 | 2 | 4 | 311 | 3 | 326 | 1.06e-130 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551020 | G7JL35 | 91.250 | 320 | 19 | 1 | 1 | 311 | 1 | 320 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0551010 | Msa0551020 | 0.831513 | 1.599952e-55 | -8.615850e-47 |
| Msa0551020 | Msa1191640 | 0.817738 | 2.822663e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551020 | MtrunA17_Chr6g0480021 | 72.897 | 321 | 60 | 2 | 1 | 312 | 1 | 303 | 7.78e-171 | 475 |
| Msa0551020 | MtrunA17_Chr6g0480011 | 63.551 | 321 | 107 | 2 | 1 | 311 | 1 | 321 | 1.48e-149 | 422 |
| Msa0551020 | MtrunA17_Chr6g0479981 | 60.692 | 318 | 115 | 2 | 1 | 309 | 1 | 317 | 4.05e-145 | 411 |
| Msa0551020 | MtrunA17_Chr4g0036261 | 84.699 | 183 | 19 | 1 | 138 | 311 | 1 | 183 | 1.85e-110 | 318 |
| Msa0551020 | MtrunA17_Chr4g0036301 | 87.209 | 172 | 13 | 1 | 150 | 312 | 1 | 172 | 4.92e-107 | 309 |
| Msa0551020 | MtrunA17_Chr4g0036321 | 88.889 | 171 | 10 | 1 | 150 | 311 | 1 | 171 | 1.10e-106 | 308 |
| Msa0551020 | MtrunA17_Chr1g0173621 | 49.536 | 323 | 143 | 3 | 1 | 311 | 1 | 315 | 2.36e-105 | 310 |
| Msa0551020 | MtrunA17_Chr3g0121001 | 49.686 | 318 | 135 | 7 | 6 | 309 | 7 | 313 | 1.26e-98 | 293 |
| Msa0551020 | MtrunA17_Chr4g0018921 | 44.340 | 318 | 161 | 7 | 5 | 311 | 2 | 314 | 1.16e-83 | 254 |
| Msa0551020 | MtrunA17_Chr5g0447941 | 47.516 | 322 | 145 | 8 | 1 | 309 | 1 | 311 | 8.06e-83 | 252 |
| Msa0551020 | MtrunA17_Chr5g0447951 | 48.837 | 301 | 139 | 6 | 1 | 289 | 1 | 298 | 1.18e-82 | 252 |
| Msa0551020 | MtrunA17_Chr5g0447961 | 48.837 | 301 | 139 | 6 | 1 | 289 | 1 | 298 | 1.18e-82 | 252 |
| Msa0551020 | MtrunA17_Chr8g0368921 | 42.812 | 313 | 163 | 6 | 11 | 311 | 10 | 318 | 6.30e-80 | 245 |
| Msa0551020 | MtrunA17_Chr8g0368931 | 41.479 | 311 | 166 | 6 | 11 | 311 | 10 | 314 | 7.70e-73 | 227 |
| Msa0551020 | MtrunA17_Chr4g0009531 | 42.587 | 317 | 152 | 8 | 11 | 311 | 10 | 312 | 1.07e-70 | 221 |
| Msa0551020 | MtrunA17_Chr7g0239701 | 41.801 | 311 | 164 | 7 | 11 | 311 | 14 | 317 | 4.85e-69 | 217 |
| Msa0551020 | MtrunA17_Chr4g0036311 | 90.654 | 107 | 10 | 0 | 1 | 107 | 1 | 107 | 1.45e-67 | 206 |
| Msa0551020 | MtrunA17_Chr4g0009581 | 43.042 | 309 | 149 | 7 | 11 | 309 | 11 | 302 | 1.34e-65 | 208 |
| Msa0551020 | MtrunA17_Chr4g0036291 | 88.785 | 107 | 12 | 0 | 1 | 107 | 1 | 107 | 1.50e-65 | 201 |
| Msa0551020 | MtrunA17_Chr4g0036051 | 38.176 | 296 | 158 | 7 | 9 | 285 | 3 | 292 | 4.25e-56 | 184 |
| Msa0551020 | MtrunA17_Chr7g0243551 | 38.516 | 283 | 156 | 5 | 11 | 284 | 17 | 290 | 4.55e-55 | 181 |
| Msa0551020 | MtrunA17_Chr4g0036251 | 77.570 | 107 | 18 | 2 | 1 | 107 | 1 | 101 | 1.08e-54 | 173 |
| Msa0551020 | MtrunA17_Chr4g0009621 | 43.568 | 241 | 113 | 4 | 81 | 311 | 1 | 228 | 2.90e-47 | 158 |
| Msa0551020 | MtrunA17_Chr6g0479791 | 78.161 | 87 | 17 | 1 | 228 | 312 | 18 | 104 | 2.07e-43 | 144 |
| Msa0551020 | MtrunA17_Chr6g0479811 | 60.748 | 107 | 42 | 0 | 181 | 287 | 1 | 107 | 9.48e-43 | 143 |
| Msa0551020 | MtrunA17_Chr6g0479801 | 68.750 | 48 | 15 | 0 | 105 | 152 | 38 | 85 | 1.67e-18 | 79.0 |
| Msa0551020 | MtrunA17_Chr3g0127491 | 23.906 | 297 | 162 | 8 | 35 | 285 | 72 | 350 | 1.61e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551020 | AT1G59960.1 | 47.077 | 325 | 158 | 3 | 1 | 311 | 1 | 325 | 7.64e-109 | 320 |
| Msa0551020 | AT1G59950.1 | 48.852 | 305 | 146 | 2 | 17 | 311 | 15 | 319 | 5.70e-98 | 291 |
| Msa0551020 | AT2G37790.1 | 44.839 | 310 | 156 | 5 | 11 | 311 | 10 | 313 | 2.68e-84 | 256 |
| Msa0551020 | AT2G37770.2 | 45.338 | 311 | 154 | 6 | 11 | 311 | 10 | 314 | 1.71e-83 | 254 |
| Msa0551020 | AT5G62420.1 | 43.770 | 313 | 159 | 8 | 11 | 311 | 8 | 315 | 1.19e-78 | 242 |
| Msa0551020 | AT3G53880.1 | 42.947 | 319 | 166 | 5 | 3 | 311 | 2 | 314 | 4.97e-77 | 238 |
| Msa0551020 | AT2G37760.2 | 42.122 | 311 | 160 | 5 | 11 | 311 | 10 | 310 | 7.31e-77 | 238 |
| Msa0551020 | AT2G37760.1 | 42.122 | 311 | 160 | 5 | 11 | 311 | 10 | 310 | 7.31e-77 | 238 |
| Msa0551020 | AT5G01670.1 | 39.564 | 321 | 171 | 9 | 2 | 309 | 9 | 319 | 7.24e-71 | 223 |
| Msa0551020 | AT2G37760.4 | 42.014 | 288 | 148 | 4 | 11 | 289 | 10 | 287 | 1.29e-70 | 221 |
| Msa0551020 | AT2G37760.3 | 42.014 | 288 | 148 | 4 | 11 | 289 | 10 | 287 | 1.29e-70 | 221 |
| Msa0551020 | AT2G37760.5 | 42.308 | 286 | 146 | 4 | 11 | 287 | 10 | 285 | 1.96e-70 | 220 |
| Msa0551020 | AT3G53880.2 | 41.980 | 293 | 153 | 5 | 3 | 285 | 2 | 287 | 4.51e-66 | 210 |
| Msa0551020 | AT5G01670.2 | 36.494 | 348 | 171 | 10 | 2 | 309 | 9 | 346 | 6.98e-65 | 208 |
| Msa0551020 | AT2G21260.1 | 37.037 | 297 | 162 | 7 | 8 | 285 | 2 | 292 | 2.23e-64 | 205 |
| Msa0551020 | AT2G21250.1 | 37.037 | 297 | 162 | 7 | 8 | 285 | 2 | 292 | 6.07e-64 | 204 |
| Msa0551020 | AT2G37760.6 | 42.308 | 260 | 137 | 4 | 62 | 311 | 8 | 264 | 1.54e-61 | 197 |
| Msa0551020 | AT2G37760.7 | 42.308 | 260 | 137 | 4 | 62 | 311 | 8 | 264 | 1.54e-61 | 197 |
| Msa0551020 | AT2G37770.1 | 48.259 | 201 | 89 | 5 | 11 | 202 | 10 | 204 | 6.54e-53 | 175 |
| Msa0551020 | AT2G21250.2 | 38.235 | 238 | 122 | 7 | 8 | 226 | 2 | 233 | 8.60e-48 | 160 |
| Msa0551020 | AT2G21260.2 | 33.790 | 219 | 124 | 5 | 86 | 285 | 8 | 224 | 3.51e-39 | 138 |
| Msa0551020 | AT1G06690.1 | 26.224 | 286 | 150 | 9 | 42 | 283 | 94 | 362 | 1.51e-14 | 73.9 |
| Msa0551020 | AT5G53580.1 | 23.188 | 276 | 158 | 7 | 42 | 276 | 80 | 342 | 8.50e-13 | 68.6 |
Find 65 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4_1:+46597031 | Msa0551020:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 4_1:-46597573 | None:intergenic |
| TTGGTTGATGCCATTGAAAT+AGG | 0.299974 | 4_1:+46597050 | Msa0551020:CDS |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4_1:+46596981 | Msa0551020:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4_1:+46598001 | Msa0551020:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4_1:+46598435 | Msa0551020:CDS |
| CAATGGGAATCGCCCCTTGC+TGG | 0.371644 | 4_1:-46598382 | None:intergenic |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 4_1:+46597577 | Msa0551020:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4_1:+46598521 | Msa0551020:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4_1:+46597518 | Msa0551020:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4_1:+46596954 | Msa0551020:CDS |
| TGTTCGTTACTTCCAAGTTA+TGG | 0.401669 | 4_1:+46597177 | Msa0551020:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4_1:+46598436 | Msa0551020:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 4_1:+46597484 | Msa0551020:CDS |
| AGTTAAATTTCAATTGCATA+AGG | 0.410609 | 4_1:-46598657 | None:intergenic |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4_1:-46596987 | None:intergenic |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 4_1:+46597485 | Msa0551020:CDS |
| ATTGTACAGAAAACTGAAGT+TGG | 0.437712 | 4_1:+46597346 | Msa0551020:intron |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 4_1:+46597503 | Msa0551020:CDS |
| ACATCTTGTTTCAACCTCAC+TGG | 0.444084 | 4_1:-46597398 | None:intergenic |
| TTATATATTTGATGTGATCA+TGG | 0.457646 | 4_1:+46598599 | Msa0551020:three_prime_UTR |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 4_1:+46598496 | Msa0551020:CDS |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 4_1:-46596954 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4_1:+46597466 | Msa0551020:CDS |
| AATGGCATCAACCAAAATTG+AGG | 0.495834 | 4_1:-46597042 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 4_1:-46597555 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 4_1:-46598555 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4_1:+46597131 | Msa0551020:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4_1:+46598354 | Msa0551020:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4_1:+46598538 | Msa0551020:CDS |
| AGCATCAGTACACCATAACT+TGG | 0.527137 | 4_1:-46597189 | None:intergenic |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4_1:+46596955 | Msa0551020:CDS |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 4_1:-46598028 | None:intergenic |
| AAAACTGAAGTTGGACTATG+TGG | 0.535532 | 4_1:+46597355 | Msa0551020:CDS |
| ATGCCTGTAGCCTATTTCAA+TGG | 0.544065 | 4_1:-46597060 | None:intergenic |
| ATGCCATTGAAATAGGCTAC+AGG | 0.548301 | 4_1:+46597057 | Msa0551020:CDS |
| AGGACTTCATGTGGTGGAGA+GGG | 0.552325 | 4_1:-46597017 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 4_1:+46598405 | Msa0551020:CDS |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 4_1:-46598497 | None:intergenic |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4_1:+46597950 | Msa0551020:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 4_1:-46597584 | None:intergenic |
| ATTTGATTCACTTTCCAGTG+AGG | 0.573209 | 4_1:+46597384 | Msa0551020:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4_1:+46598550 | Msa0551020:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4_1:+46598369 | Msa0551020:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 4_1:+46598072 | Msa0551020:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4_1:+46597980 | Msa0551020:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4_1:+46597969 | Msa0551020:CDS |
| GAAATATGCTTGCTTGAGGG+TGG | 0.585318 | 4_1:-46597243 | None:intergenic |
| GAGGACTTCATGTGGTGGAG+AGG | 0.593214 | 4_1:-46597018 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4_1:+46597101 | Msa0551020:CDS |
| GAGCTGGGAGTACACGGTCA+TGG | 0.594078 | 4_1:-46597214 | None:intergenic |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4_1:-46597116 | None:intergenic |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 4_1:+46596938 | Msa0551020:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4_1:+46598554 | Msa0551020:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4_1:+46598549 | Msa0551020:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 4_1:+46598400 | Msa0551020:CDS |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4_1:-46597995 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 4_1:+46597404 | Msa0551020:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 4_1:+46597424 | Msa0551020:CDS |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4_1:+46598368 | Msa0551020:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.683706 | 4_1:-46597037 | None:intergenic |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4_1:+46597983 | Msa0551020:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4_1:+46598370 | Msa0551020:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4_1:-46597023 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4_1:-46597026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTGTCTAATTTTATTTT+TGG | + | chr4_1:46597317-46597336 | Msa0551020:intron | 15.0% |
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | chr4_1:46598170-46598189 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTCAA+TGG | + | chr4_1:46598183-46598202 | Msa0551020:intron | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | chr4_1:46598256-46598275 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr4_1:46598435-46598454 | Msa0551020:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr4_1:46598436-46598455 | Msa0551020:CDS | 15.0% |
| !!! | TACTTGTCTAATTTTATTTT+TGG | + | chr4_1:46597317-46597336 | Msa0551020:intron | 15.0% |
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | chr4_1:46598170-46598189 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTCAA+TGG | + | chr4_1:46598183-46598202 | Msa0551020:intron | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | chr4_1:46598256-46598275 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr4_1:46598435-46598454 | Msa0551020:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr4_1:46598436-46598455 | Msa0551020:CDS | 15.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | chr4_1:46597449-46597468 | Msa0551020:CDS | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr4_1:46597457-46597476 | Msa0551020:CDS | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | chr4_1:46597732-46597751 | None:intergenic | 20.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | chr4_1:46597733-46597752 | None:intergenic | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | chr4_1:46597885-46597904 | Msa0551020:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | chr4_1:46598122-46598141 | None:intergenic | 20.0% |
| !!! | AACTTCACTACATTTTTAAT+TGG | - | chr4_1:46598133-46598152 | None:intergenic | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | - | chr4_1:46598469-46598488 | None:intergenic | 20.0% |
| !!! | ATAAACAAAAATTTGCTCAA+GGG | - | chr4_1:46598583-46598602 | None:intergenic | 20.0% |
| !!! | TATAAACAAAAATTTGCTCA+AGG | - | chr4_1:46598584-46598603 | None:intergenic | 20.0% |
| !! | TTATATATTTGATGTGATCA+TGG | + | chr4_1:46598599-46598618 | Msa0551020:three_prime_UTR | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | chr4_1:46597449-46597468 | Msa0551020:CDS | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr4_1:46597457-46597476 | Msa0551020:CDS | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | chr4_1:46597732-46597751 | None:intergenic | 20.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | chr4_1:46597733-46597752 | None:intergenic | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | chr4_1:46597885-46597904 | Msa0551020:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | chr4_1:46598122-46598141 | None:intergenic | 20.0% |
| !!! | AACTTCACTACATTTTTAAT+TGG | - | chr4_1:46598133-46598152 | None:intergenic | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | - | chr4_1:46598469-46598488 | None:intergenic | 20.0% |
| !!! | ATAAACAAAAATTTGCTCAA+GGG | - | chr4_1:46598583-46598602 | None:intergenic | 20.0% |
| !!! | TATAAACAAAAATTTGCTCA+AGG | - | chr4_1:46598584-46598603 | None:intergenic | 20.0% |
| !! | TTATATATTTGATGTGATCA+TGG | + | chr4_1:46598599-46598618 | Msa0551020:three_prime_UTR | 20.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr4_1:46597458-46597477 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr4_1:46597456-46597475 | Msa0551020:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr4_1:46597484-46597503 | Msa0551020:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr4_1:46597485-46597504 | Msa0551020:CDS | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | chr4_1:46597637-46597656 | Msa0551020:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | chr4_1:46597666-46597685 | None:intergenic | 25.0% |
| !! | TGATTCTTTCTAGAAATTTC+TGG | + | chr4_1:46597760-46597779 | Msa0551020:intron | 25.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | chr4_1:46597892-46597911 | Msa0551020:intron | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | - | chr4_1:46598310-46598329 | None:intergenic | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | chr4_1:46598324-46598343 | Msa0551020:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_1:46598521-46598540 | Msa0551020:CDS | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr4_1:46597458-46597477 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr4_1:46597456-46597475 | Msa0551020:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr4_1:46597484-46597503 | Msa0551020:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr4_1:46597485-46597504 | Msa0551020:CDS | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | chr4_1:46597637-46597656 | Msa0551020:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | chr4_1:46597666-46597685 | None:intergenic | 25.0% |
| !! | TGATTCTTTCTAGAAATTTC+TGG | + | chr4_1:46597760-46597779 | Msa0551020:intron | 25.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | chr4_1:46597892-46597911 | Msa0551020:intron | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | - | chr4_1:46598310-46598329 | None:intergenic | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | chr4_1:46598324-46598343 | Msa0551020:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_1:46598521-46598540 | Msa0551020:CDS | 25.0% |
| TATAATACTGAAGAACCTCT+AGG | + | chr4_1:46597101-46597120 | Msa0551020:CDS | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | chr4_1:46597346-46597365 | Msa0551020:intron | 30.0% | |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | chr4_1:46597660-46597679 | Msa0551020:intron | 30.0% |
| CAGATATTTCCCTTTACATA+TGG | + | chr4_1:46597720-46597739 | Msa0551020:intron | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | chr4_1:46597804-46597823 | Msa0551020:intron | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | chr4_1:46597895-46597914 | Msa0551020:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_1:46598401-46598420 | None:intergenic | 30.0% |
| TATAATACTGAAGAACCTCT+AGG | + | chr4_1:46597101-46597120 | Msa0551020:CDS | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | chr4_1:46597346-46597365 | Msa0551020:intron | 30.0% | |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | chr4_1:46597660-46597679 | Msa0551020:intron | 30.0% |
| CAGATATTTCCCTTTACATA+TGG | + | chr4_1:46597720-46597739 | Msa0551020:intron | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | chr4_1:46597804-46597823 | Msa0551020:intron | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | chr4_1:46597895-46597914 | Msa0551020:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_1:46598401-46598420 | None:intergenic | 30.0% |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | chr4_1:46596981-46597000 | Msa0551020:CDS | 35.0% |
| GATGTTCCAAAACCTATCAT+TGG | - | chr4_1:46596990-46597009 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | - | chr4_1:46597045-46597064 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCCATTGAAAT+AGG | + | chr4_1:46597050-46597069 | Msa0551020:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | chr4_1:46597127-46597146 | None:intergenic | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | chr4_1:46597131-46597150 | Msa0551020:CDS | 35.0% |
| ! | GTTCATCGCGATTTTTAATG+AGG | - | chr4_1:46597157-46597176 | None:intergenic | 35.0% |
| TGTTCGTTACTTCCAAGTTA+TGG | + | chr4_1:46597177-46597196 | Msa0551020:CDS | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | - | chr4_1:46597249-46597268 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | chr4_1:46597250-46597269 | None:intergenic | 35.0% | |
| AAAACTGAAGTTGGACTATG+TGG | + | chr4_1:46597355-46597374 | Msa0551020:CDS | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | chr4_1:46597384-46597403 | Msa0551020:CDS | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | chr4_1:46597404-46597423 | Msa0551020:CDS | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | chr4_1:46597424-46597443 | Msa0551020:CDS | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr4_1:46597518-46597537 | Msa0551020:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | chr4_1:46597576-46597595 | None:intergenic | 35.0% |
| TATCTGACGTCTATGAGTAT+CGG | - | chr4_1:46597706-46597725 | None:intergenic | 35.0% | |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | chr4_1:46598001-46598020 | Msa0551020:CDS | 35.0% |
| TAAAATAATGAGCTGCACCT+GGG | - | chr4_1:46598092-46598111 | None:intergenic | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | - | chr4_1:46598093-46598112 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | chr4_1:46598200-46598219 | Msa0551020:intron | 35.0% | |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | chr4_1:46598212-46598231 | Msa0551020:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | chr4_1:46598244-46598263 | None:intergenic | 35.0% |
| TTATGCAGATAGCACTAAGA+TGG | + | chr4_1:46598354-46598373 | Msa0551020:intron | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | chr4_1:46598369-46598388 | Msa0551020:CDS | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_1:46598402-46598421 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_1:46598400-46598419 | Msa0551020:CDS | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | chr4_1:46598405-46598424 | Msa0551020:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr4_1:46598538-46598557 | Msa0551020:CDS | 35.0% |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | chr4_1:46596981-46597000 | Msa0551020:CDS | 35.0% |
| GATGTTCCAAAACCTATCAT+TGG | - | chr4_1:46596990-46597009 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | - | chr4_1:46597045-46597064 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCCATTGAAAT+AGG | + | chr4_1:46597050-46597069 | Msa0551020:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | chr4_1:46597127-46597146 | None:intergenic | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | chr4_1:46597131-46597150 | Msa0551020:CDS | 35.0% |
| ! | GTTCATCGCGATTTTTAATG+AGG | - | chr4_1:46597157-46597176 | None:intergenic | 35.0% |
| TGTTCGTTACTTCCAAGTTA+TGG | + | chr4_1:46597177-46597196 | Msa0551020:CDS | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | - | chr4_1:46597249-46597268 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | chr4_1:46597250-46597269 | None:intergenic | 35.0% | |
| AAAACTGAAGTTGGACTATG+TGG | + | chr4_1:46597355-46597374 | Msa0551020:CDS | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | chr4_1:46597384-46597403 | Msa0551020:CDS | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | chr4_1:46597404-46597423 | Msa0551020:CDS | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | chr4_1:46597424-46597443 | Msa0551020:CDS | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr4_1:46597518-46597537 | Msa0551020:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | chr4_1:46597576-46597595 | None:intergenic | 35.0% |
| TATCTGACGTCTATGAGTAT+CGG | - | chr4_1:46597706-46597725 | None:intergenic | 35.0% | |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | chr4_1:46598001-46598020 | Msa0551020:CDS | 35.0% |
| TAAAATAATGAGCTGCACCT+GGG | - | chr4_1:46598092-46598111 | None:intergenic | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | - | chr4_1:46598093-46598112 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | chr4_1:46598200-46598219 | Msa0551020:intron | 35.0% | |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | chr4_1:46598212-46598231 | Msa0551020:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | chr4_1:46598244-46598263 | None:intergenic | 35.0% |
| TTATGCAGATAGCACTAAGA+TGG | + | chr4_1:46598354-46598373 | Msa0551020:intron | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | chr4_1:46598369-46598388 | Msa0551020:CDS | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_1:46598402-46598421 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_1:46598400-46598419 | Msa0551020:CDS | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | chr4_1:46598405-46598424 | Msa0551020:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr4_1:46598538-46598557 | Msa0551020:CDS | 35.0% |
| CAGAGGTGATGCTAAATTCA+GGG | + | chr4_1:46596955-46596974 | Msa0551020:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr4_1:46596975-46596994 | Msa0551020:CDS | 40.0% | |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | chr4_1:46597031-46597050 | Msa0551020:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr4_1:46597040-46597059 | None:intergenic | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | + | chr4_1:46597057-46597076 | Msa0551020:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | - | chr4_1:46597063-46597082 | None:intergenic | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | chr4_1:46597192-46597211 | None:intergenic | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | chr4_1:46597401-46597420 | None:intergenic | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_1:46597466-46597485 | Msa0551020:CDS | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | + | chr4_1:46597503-46597522 | Msa0551020:CDS | 40.0% | |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | chr4_1:46597558-46597577 | None:intergenic | 40.0% |
| AATCTCTCCTGCAGTTAATC+AGG | + | chr4_1:46597577-46597596 | Msa0551020:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | chr4_1:46597587-46597606 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | chr4_1:46597912-46597931 | Msa0551020:intron | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | chr4_1:46597919-46597938 | Msa0551020:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | chr4_1:46597920-46597939 | Msa0551020:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr4_1:46597950-46597969 | Msa0551020:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | chr4_1:46597969-46597988 | Msa0551020:CDS | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr4_1:46597998-46598017 | None:intergenic | 40.0% |
| ATTGAATTCTCCATCACTGC+AGG | - | chr4_1:46598031-46598050 | None:intergenic | 40.0% | |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | + | chr4_1:46598072-46598091 | Msa0551020:CDS | 40.0% |
| CTAAGATGGATATACCAGCA+AGG | + | chr4_1:46598368-46598387 | Msa0551020:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | chr4_1:46598370-46598389 | Msa0551020:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | + | chr4_1:46598496-46598515 | Msa0551020:CDS | 40.0% | |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | - | chr4_1:46598500-46598519 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | chr4_1:46598548-46598567 | None:intergenic | 40.0% |
| CAGAGGTGATGCTAAATTCA+GGG | + | chr4_1:46596955-46596974 | Msa0551020:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr4_1:46596975-46596994 | Msa0551020:CDS | 40.0% | |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | chr4_1:46597031-46597050 | Msa0551020:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr4_1:46597040-46597059 | None:intergenic | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | + | chr4_1:46597057-46597076 | Msa0551020:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | - | chr4_1:46597063-46597082 | None:intergenic | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | chr4_1:46597192-46597211 | None:intergenic | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | chr4_1:46597401-46597420 | None:intergenic | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_1:46597466-46597485 | Msa0551020:CDS | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | + | chr4_1:46597503-46597522 | Msa0551020:CDS | 40.0% | |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | chr4_1:46597558-46597577 | None:intergenic | 40.0% |
| AATCTCTCCTGCAGTTAATC+AGG | + | chr4_1:46597577-46597596 | Msa0551020:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | chr4_1:46597587-46597606 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | chr4_1:46597912-46597931 | Msa0551020:intron | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | chr4_1:46597919-46597938 | Msa0551020:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | chr4_1:46597920-46597939 | Msa0551020:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr4_1:46597950-46597969 | Msa0551020:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | chr4_1:46597969-46597988 | Msa0551020:CDS | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr4_1:46597998-46598017 | None:intergenic | 40.0% |
| ATTGAATTCTCCATCACTGC+AGG | - | chr4_1:46598031-46598050 | None:intergenic | 40.0% | |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | + | chr4_1:46598072-46598091 | Msa0551020:CDS | 40.0% |
| CTAAGATGGATATACCAGCA+AGG | + | chr4_1:46598368-46598387 | Msa0551020:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | chr4_1:46598370-46598389 | Msa0551020:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | + | chr4_1:46598496-46598515 | Msa0551020:CDS | 40.0% | |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | - | chr4_1:46598500-46598519 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | chr4_1:46598548-46598567 | None:intergenic | 40.0% |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr4_1:46596938-46596957 | Msa0551020:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | chr4_1:46596957-46596976 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | chr4_1:46596954-46596973 | Msa0551020:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | - | chr4_1:46597029-46597048 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+CGG | - | chr4_1:46597223-46597242 | None:intergenic | 45.0% |
| GAAATATGCTTGCTTGAGGG+TGG | - | chr4_1:46597246-46597265 | None:intergenic | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | chr4_1:46597921-46597940 | Msa0551020:intron | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | chr4_1:46598549-46598568 | Msa0551020:CDS | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | chr4_1:46598550-46598569 | Msa0551020:CDS | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr4_1:46596938-46596957 | Msa0551020:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | chr4_1:46596957-46596976 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | chr4_1:46596954-46596973 | Msa0551020:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | - | chr4_1:46597029-46597048 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+CGG | - | chr4_1:46597223-46597242 | None:intergenic | 45.0% |
| GAAATATGCTTGCTTGAGGG+TGG | - | chr4_1:46597246-46597265 | None:intergenic | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | chr4_1:46597921-46597940 | Msa0551020:intron | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | chr4_1:46598549-46598568 | Msa0551020:CDS | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | chr4_1:46598550-46598569 | Msa0551020:CDS | 45.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | chr4_1:46597020-46597039 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_1:46597119-46597138 | None:intergenic | 50.0% | |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | chr4_1:46597232-46597251 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | chr4_1:46597233-46597252 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | + | chr4_1:46598018-46598037 | Msa0551020:CDS | 50.0% |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | chr4_1:46597020-46597039 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_1:46597119-46597138 | None:intergenic | 50.0% | |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | chr4_1:46597232-46597251 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | chr4_1:46597233-46597252 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | + | chr4_1:46598018-46598037 | Msa0551020:CDS | 50.0% |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | chr4_1:46597021-46597040 | None:intergenic | 55.0% |
| GAGGTGAGGACTTCATGTGG+TGG | - | chr4_1:46597026-46597045 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_1:46597980-46597999 | Msa0551020:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_1:46597983-46598002 | Msa0551020:CDS | 55.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | chr4_1:46598554-46598573 | Msa0551020:CDS | 55.0% | |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | chr4_1:46597021-46597040 | None:intergenic | 55.0% |
| GAGGTGAGGACTTCATGTGG+TGG | - | chr4_1:46597026-46597045 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_1:46597980-46597999 | Msa0551020:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_1:46597983-46598002 | Msa0551020:CDS | 55.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | chr4_1:46598554-46598573 | Msa0551020:CDS | 55.0% | |
| ! | GAGCTGGGAGTACACGGTCA+TGG | - | chr4_1:46597217-46597236 | None:intergenic | 60.0% |
| CAATGGGAATCGCCCCTTGC+TGG | - | chr4_1:46598385-46598404 | None:intergenic | 60.0% | |
| ! | GAGCTGGGAGTACACGGTCA+TGG | - | chr4_1:46597217-46597236 | None:intergenic | 60.0% |
| CAATGGGAATCGCCCCTTGC+TGG | - | chr4_1:46598385-46598404 | None:intergenic | 60.0% | |
| GCCGTCCCACAGCTCTTCCA+AGG | - | chr4_1:46598558-46598577 | None:intergenic | 65.0% | |
| GCCGTCCCACAGCTCTTCCA+AGG | - | chr4_1:46598558-46598577 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 46596936 | 46598666 | 46596936 | ID=Msa0551020;Name=Msa0551020 |
| chr4_1 | mRNA | 46596936 | 46598666 | 46596936 | ID=Msa0551020-mRNA-1;Parent=Msa0551020;Name=Msa0551020-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.33|0.25|1|1|1|4|80|312 |
| chr4_1 | exon | 46596936 | 46597252 | 46596936 | ID=Msa0551020-mRNA-1:exon:12625;Parent=Msa0551020-mRNA-1 |
| chr4_1 | exon | 46597355 | 46597598 | 46597355 | ID=Msa0551020-mRNA-1:exon:12626;Parent=Msa0551020-mRNA-1 |
| chr4_1 | exon | 46597941 | 46598093 | 46597941 | ID=Msa0551020-mRNA-1:exon:12627;Parent=Msa0551020-mRNA-1 |
| chr4_1 | exon | 46598362 | 46598666 | 46598362 | ID=Msa0551020-mRNA-1:exon:12628;Parent=Msa0551020-mRNA-1 |
| chr4_1 | CDS | 46596936 | 46597252 | 46596936 | ID=Msa0551020-mRNA-1:cds;Parent=Msa0551020-mRNA-1 |
| chr4_1 | CDS | 46597355 | 46597598 | 46597355 | ID=Msa0551020-mRNA-1:cds;Parent=Msa0551020-mRNA-1 |
| chr4_1 | CDS | 46597941 | 46598093 | 46597941 | ID=Msa0551020-mRNA-1:cds;Parent=Msa0551020-mRNA-1 |
| chr4_1 | CDS | 46598362 | 46598586 | 46598362 | ID=Msa0551020-mRNA-1:cds;Parent=Msa0551020-mRNA-1 |
| chr4_1 | three_prime_UTR | 46598587 | 46598666 | 46598587 | ID=Msa0551020-mRNA-1:three_prime_utr;Parent=Msa0551020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
