Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191640 | sp|E7C196|MER_ERYCB | 59.568 | 324 | 115 | 2 | 4 | 311 | 3 | 326 | 4.88e-131 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191640 | G7JL35 | 91.562 | 320 | 18 | 1 | 1 | 311 | 1 | 320 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014590 | Msa1191640 | 0.812545 | 4.017574e-51 | -8.615850e-47 |
| Msa0016320 | Msa1191640 | 0.801883 | 7.296669e-49 | -8.615850e-47 |
| Msa0045810 | Msa1191640 | 0.807393 | 5.167050e-50 | -8.615850e-47 |
| Msa0062010 | Msa1191640 | 0.823905 | 1.076890e-53 | -8.615850e-47 |
| Msa0063540 | Msa1191640 | 0.831177 | 1.935469e-55 | -8.615850e-47 |
| Msa0108350 | Msa1191640 | 0.810152 | 1.328509e-50 | -8.615850e-47 |
| Msa0606470 | Msa1191640 | 0.837687 | 4.486701e-57 | -8.615850e-47 |
| Msa0616010 | Msa1191640 | 0.805803 | 1.118851e-49 | -8.615850e-47 |
| Msa0629160 | Msa1191640 | 0.815536 | 8.791532e-52 | -8.615850e-47 |
| Msa0647300 | Msa1191640 | 0.803776 | 2.966869e-49 | -8.615850e-47 |
| Msa0686830 | Msa1191640 | 0.810260 | 1.259019e-50 | -8.615850e-47 |
| Msa0708680 | Msa1191640 | 0.806025 | 1.004940e-49 | -8.615850e-47 |
| Msa0739720 | Msa1191640 | 0.813562 | 2.404076e-51 | -8.615850e-47 |
| Msa0814160 | Msa1191640 | 0.801977 | 6.979517e-49 | -8.615850e-47 |
| Msa0125600 | Msa1191640 | 0.814633 | 1.395168e-51 | -8.615850e-47 |
| Msa0152990 | Msa1191640 | 0.800177 | 1.628766e-48 | -8.615850e-47 |
| Msa0190890 | Msa1191640 | 0.808681 | 2.748790e-50 | -8.615850e-47 |
| Msa0220090 | Msa1191640 | 0.853343 | 2.544247e-61 | -8.615850e-47 |
| Msa0237380 | Msa1191640 | 0.805540 | 1.270442e-49 | -8.615850e-47 |
| Msa0238110 | Msa1191640 | 0.822105 | 2.830183e-53 | -8.615850e-47 |
| Msa0390170 | Msa1191640 | 0.806754 | 7.053756e-50 | -8.615850e-47 |
| Msa0396860 | Msa1191640 | 0.826062 | 3.333321e-54 | -8.615850e-47 |
| Msa0409500 | Msa1191640 | 0.811858 | 5.673190e-51 | -8.615850e-47 |
| Msa0414480 | Msa1191640 | 0.803171 | 3.958823e-49 | -8.615850e-47 |
| Msa0418230 | Msa1191640 | 0.808363 | 3.213899e-50 | -8.615850e-47 |
| Msa0419570 | Msa1191640 | 0.818563 | 1.836189e-52 | -8.615850e-47 |
| Msa0448190 | Msa1191640 | 0.830943 | 2.208247e-55 | -8.615850e-47 |
| Msa0980850 | Msa1191640 | 0.815551 | 8.722936e-52 | -8.615850e-47 |
| Msa1022510 | Msa1191640 | 0.815339 | 9.725781e-52 | -8.615850e-47 |
| Msa1030320 | Msa1191640 | 0.809005 | 2.342652e-50 | -8.615850e-47 |
| Msa1035450 | Msa1191640 | 0.813417 | 2.587137e-51 | -8.615850e-47 |
| Msa1048350 | Msa1191640 | 0.804892 | 1.736602e-49 | -8.615850e-47 |
| Msa1069350 | Msa1191640 | 0.808764 | 2.637690e-50 | -8.615850e-47 |
| Msa1075320 | Msa1191640 | 0.841459 | 4.690232e-58 | -8.615850e-47 |
| Msa1106680 | Msa1191640 | 0.821513 | 3.879300e-53 | -8.615850e-47 |
| Msa0261400 | Msa1191640 | 0.857278 | 1.820017e-62 | -8.615850e-47 |
| Msa0267400 | Msa1191640 | 0.823236 | 1.544268e-53 | -8.615850e-47 |
| Msa0277520 | Msa1191640 | 0.836301 | 1.013815e-56 | -8.615850e-47 |
| Msa0299030 | Msa1191640 | 0.861426 | 1.034945e-63 | -8.615850e-47 |
| Msa0307040 | Msa1191640 | 0.804417 | 2.182456e-49 | -8.615850e-47 |
| Msa0316020 | Msa1191640 | 0.801265 | 9.767496e-49 | -8.615850e-47 |
| Msa0328090 | Msa1191640 | 0.804141 | 2.490751e-49 | -8.615850e-47 |
| Msa0342660 | Msa1191640 | 0.814667 | 1.371042e-51 | -8.615850e-47 |
| Msa0348370 | Msa1191640 | 0.808891 | 2.478359e-50 | -8.615850e-47 |
| Msa1108560 | Msa1191640 | 0.828323 | 9.582383e-55 | -8.615850e-47 |
| Msa1157210 | Msa1191640 | 0.815461 | 9.138029e-52 | -8.615850e-47 |
| Msa1162750 | Msa1191640 | 0.845609 | 3.650912e-59 | -8.615850e-47 |
| Msa1170340 | Msa1191640 | 0.813180 | 2.916590e-51 | -8.615850e-47 |
| Msa1179270 | Msa1191640 | 0.823471 | 1.360766e-53 | -8.615850e-47 |
| Msa1181090 | Msa1191640 | 0.814520 | 1.477510e-51 | -8.615850e-47 |
| Msa1188080 | Msa1191640 | 0.804148 | 2.483032e-49 | -8.615850e-47 |
| Msa1191640 | Msa1225850 | 0.807128 | 5.880875e-50 | -8.615850e-47 |
| Msa1191640 | Msa1267990 | 0.807789 | 4.257678e-50 | -8.615850e-47 |
| Msa1191640 | Msa1319190 | 0.803940 | 2.742416e-49 | -8.615850e-47 |
| Msa1191640 | Msa1321970 | 0.805519 | 1.283831e-49 | -8.615850e-47 |
| Msa1191640 | Msa1322500 | 0.826206 | 3.079912e-54 | -8.615850e-47 |
| Msa1191640 | Msa1368930 | 0.836196 | 1.078289e-56 | -8.615850e-47 |
| Msa1191640 | Msa1387480 | 0.801487 | 8.796717e-49 | -8.615850e-47 |
| Msa1191640 | Msa1406840 | 0.833628 | 4.780900e-56 | -8.615850e-47 |
| Msa1191640 | Msa1441450 | 0.820126 | 8.086209e-53 | -8.615850e-47 |
| Msa1191640 | Msa1455360 | 0.820500 | 6.639415e-53 | -8.615850e-47 |
| Msa0496060 | Msa1191640 | 0.804068 | 2.579249e-49 | -8.615850e-47 |
| Msa0502970 | Msa1191640 | 0.821262 | 4.433433e-53 | -8.615850e-47 |
| Msa0515150 | Msa1191640 | 0.806316 | 8.729616e-50 | -8.615850e-47 |
| Msa0523720 | Msa1191640 | 0.808546 | 2.937402e-50 | -8.615850e-47 |
| Msa0551020 | Msa1191640 | 0.817738 | 2.822663e-52 | -8.615850e-47 |
| Msa0565700 | Msa1191640 | 0.802108 | 6.561196e-49 | -8.615850e-47 |
| Msa0580100 | Msa1191640 | 0.807235 | 5.580162e-50 | -8.615850e-47 |
| Msa0583390 | Msa1191640 | 0.802085 | 6.631027e-49 | -8.615850e-47 |
| Msa0587870 | Msa1191640 | 0.800577 | 1.350359e-48 | -8.615850e-47 |
| Msa0591490 | Msa1191640 | 0.810165 | 1.320205e-50 | -8.615850e-47 |
| Msa0594630 | Msa1191640 | 0.802587 | 5.226643e-49 | -8.615850e-47 |
| Msa0867080 | Msa1191640 | 0.808561 | 2.916111e-50 | -8.615850e-47 |
| Msa0869660 | Msa1191640 | 0.806733 | 7.126144e-50 | -8.615850e-47 |
| Msa0898830 | Msa1191640 | -0.824393 | 8.269058e-54 | -8.615850e-47 |
| Msa0932140 | Msa1191640 | 0.809972 | 1.452599e-50 | -8.615850e-47 |
| Msa0967780 | Msa1191640 | 0.801554 | 8.524080e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191640 | MtrunA17_Chr6g0480021 | 72.274 | 321 | 62 | 2 | 1 | 312 | 1 | 303 | 5.41e-170 | 473 |
| Msa1191640 | MtrunA17_Chr6g0480011 | 63.551 | 321 | 107 | 2 | 1 | 311 | 1 | 321 | 6.36e-150 | 423 |
| Msa1191640 | MtrunA17_Chr6g0479981 | 60.692 | 318 | 115 | 2 | 1 | 309 | 1 | 317 | 2.01e-145 | 412 |
| Msa1191640 | MtrunA17_Chr4g0036261 | 84.699 | 183 | 19 | 1 | 138 | 311 | 1 | 183 | 2.21e-110 | 318 |
| Msa1191640 | MtrunA17_Chr4g0036301 | 87.209 | 172 | 13 | 1 | 150 | 312 | 1 | 172 | 3.04e-107 | 309 |
| Msa1191640 | MtrunA17_Chr4g0036321 | 88.889 | 171 | 10 | 1 | 150 | 311 | 1 | 171 | 1.09e-106 | 308 |
| Msa1191640 | MtrunA17_Chr1g0173621 | 49.536 | 323 | 143 | 3 | 1 | 311 | 1 | 315 | 1.22e-106 | 313 |
| Msa1191640 | MtrunA17_Chr3g0121001 | 49.686 | 318 | 135 | 7 | 6 | 309 | 7 | 313 | 9.86e-100 | 296 |
| Msa1191640 | MtrunA17_Chr5g0447941 | 48.137 | 322 | 143 | 8 | 1 | 309 | 1 | 311 | 3.77e-84 | 256 |
| Msa1191640 | MtrunA17_Chr5g0447951 | 49.502 | 301 | 137 | 6 | 1 | 289 | 1 | 298 | 4.54e-84 | 256 |
| Msa1191640 | MtrunA17_Chr5g0447961 | 49.502 | 301 | 137 | 6 | 1 | 289 | 1 | 298 | 4.54e-84 | 256 |
| Msa1191640 | MtrunA17_Chr4g0018921 | 45.141 | 319 | 157 | 9 | 5 | 311 | 2 | 314 | 2.57e-83 | 254 |
| Msa1191640 | MtrunA17_Chr8g0368921 | 43.131 | 313 | 162 | 6 | 11 | 311 | 10 | 318 | 5.47e-80 | 245 |
| Msa1191640 | MtrunA17_Chr8g0368931 | 41.801 | 311 | 165 | 6 | 11 | 311 | 10 | 314 | 7.79e-73 | 227 |
| Msa1191640 | MtrunA17_Chr4g0009531 | 42.271 | 317 | 153 | 8 | 11 | 311 | 10 | 312 | 1.16e-69 | 219 |
| Msa1191640 | MtrunA17_Chr7g0239701 | 42.122 | 311 | 163 | 7 | 11 | 311 | 14 | 317 | 4.96e-69 | 217 |
| Msa1191640 | MtrunA17_Chr4g0036311 | 91.589 | 107 | 9 | 0 | 1 | 107 | 1 | 107 | 7.00e-68 | 207 |
| Msa1191640 | MtrunA17_Chr4g0036291 | 89.720 | 107 | 11 | 0 | 1 | 107 | 1 | 107 | 9.07e-66 | 202 |
| Msa1191640 | MtrunA17_Chr4g0009581 | 43.366 | 309 | 148 | 7 | 11 | 309 | 11 | 302 | 6.63e-65 | 206 |
| Msa1191640 | MtrunA17_Chr4g0036051 | 38.176 | 296 | 158 | 7 | 9 | 285 | 3 | 292 | 3.59e-55 | 181 |
| Msa1191640 | MtrunA17_Chr4g0036251 | 78.505 | 107 | 17 | 2 | 1 | 107 | 1 | 101 | 7.83e-55 | 174 |
| Msa1191640 | MtrunA17_Chr7g0243551 | 38.163 | 283 | 157 | 5 | 11 | 284 | 17 | 290 | 5.08e-54 | 178 |
| Msa1191640 | MtrunA17_Chr4g0009621 | 43.568 | 241 | 113 | 4 | 81 | 311 | 1 | 228 | 7.21e-47 | 157 |
| Msa1191640 | MtrunA17_Chr6g0479791 | 78.161 | 87 | 17 | 1 | 228 | 312 | 18 | 104 | 1.78e-43 | 144 |
| Msa1191640 | MtrunA17_Chr6g0479811 | 60.748 | 107 | 42 | 0 | 181 | 287 | 1 | 107 | 9.48e-43 | 143 |
| Msa1191640 | MtrunA17_Chr6g0479801 | 68.750 | 48 | 15 | 0 | 105 | 152 | 38 | 85 | 1.57e-18 | 79.0 |
| Msa1191640 | MtrunA17_Chr3g0127491 | 23.232 | 297 | 164 | 8 | 35 | 285 | 72 | 350 | 1.21e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191640 | AT1G59960.1 | 47.692 | 325 | 156 | 3 | 1 | 311 | 1 | 325 | 1.35e-109 | 322 |
| Msa1191640 | AT1G59950.1 | 48.852 | 305 | 146 | 2 | 17 | 311 | 15 | 319 | 3.06e-98 | 292 |
| Msa1191640 | AT2G37790.1 | 44.839 | 310 | 156 | 5 | 11 | 311 | 10 | 313 | 2.76e-83 | 254 |
| Msa1191640 | AT2G37770.2 | 45.338 | 311 | 154 | 6 | 11 | 311 | 10 | 314 | 1.41e-82 | 252 |
| Msa1191640 | AT5G62420.1 | 43.770 | 313 | 159 | 8 | 11 | 311 | 8 | 315 | 5.15e-78 | 241 |
| Msa1191640 | AT3G53880.1 | 42.947 | 319 | 166 | 6 | 3 | 311 | 2 | 314 | 2.58e-76 | 236 |
| Msa1191640 | AT2G37760.2 | 42.122 | 311 | 160 | 5 | 11 | 311 | 10 | 310 | 6.67e-76 | 235 |
| Msa1191640 | AT2G37760.1 | 42.122 | 311 | 160 | 5 | 11 | 311 | 10 | 310 | 6.67e-76 | 235 |
| Msa1191640 | AT5G01670.1 | 39.252 | 321 | 172 | 9 | 2 | 309 | 9 | 319 | 4.40e-70 | 221 |
| Msa1191640 | AT2G37760.4 | 42.014 | 288 | 148 | 4 | 11 | 289 | 10 | 287 | 1.64e-69 | 218 |
| Msa1191640 | AT2G37760.3 | 42.014 | 288 | 148 | 4 | 11 | 289 | 10 | 287 | 1.64e-69 | 218 |
| Msa1191640 | AT2G37760.5 | 42.308 | 286 | 146 | 4 | 11 | 287 | 10 | 285 | 2.14e-69 | 218 |
| Msa1191640 | AT3G53880.2 | 41.781 | 292 | 155 | 5 | 3 | 285 | 2 | 287 | 1.98e-65 | 208 |
| Msa1191640 | AT5G01670.2 | 36.207 | 348 | 172 | 10 | 2 | 309 | 9 | 346 | 3.54e-64 | 206 |
| Msa1191640 | AT2G21260.1 | 37.037 | 297 | 162 | 7 | 8 | 285 | 2 | 292 | 1.62e-63 | 203 |
| Msa1191640 | AT2G21250.1 | 37.037 | 297 | 162 | 7 | 8 | 285 | 2 | 292 | 3.79e-63 | 202 |
| Msa1191640 | AT2G37760.6 | 42.692 | 260 | 136 | 4 | 62 | 311 | 8 | 264 | 2.85e-61 | 196 |
| Msa1191640 | AT2G37760.7 | 42.692 | 260 | 136 | 4 | 62 | 311 | 8 | 264 | 2.85e-61 | 196 |
| Msa1191640 | AT2G37770.1 | 48.259 | 201 | 89 | 5 | 11 | 202 | 10 | 204 | 5.02e-52 | 173 |
| Msa1191640 | AT2G21250.2 | 38.235 | 238 | 122 | 7 | 8 | 226 | 2 | 233 | 6.88e-47 | 158 |
| Msa1191640 | AT2G21260.2 | 33.790 | 219 | 124 | 5 | 86 | 285 | 8 | 224 | 8.58e-39 | 137 |
| Msa1191640 | AT1G06690.1 | 25.175 | 286 | 153 | 8 | 42 | 283 | 94 | 362 | 1.77e-14 | 73.6 |
| Msa1191640 | AT5G53580.1 | 23.381 | 278 | 155 | 8 | 42 | 276 | 80 | 342 | 4.56e-13 | 69.3 |
Find 63 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 8_1:+36351332 | Msa1191640:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 8_1:-36351874 | None:intergenic |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 8_1:+36351282 | Msa1191640:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 8_1:+36352302 | Msa1191640:CDS |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 8_1:-36352683 | None:intergenic |
| TTGGTTGATGCTATTGAAAC+AGG | 0.349605 | 8_1:+36351351 | Msa1191640:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 8_1:+36352736 | Msa1191640:CDS |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 8_1:+36351878 | Msa1191640:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 8_1:+36352822 | Msa1191640:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 8_1:+36351819 | Msa1191640:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 8_1:+36351255 | Msa1191640:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 8_1:+36352737 | Msa1191640:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 8_1:+36351785 | Msa1191640:CDS |
| AGTTAAATTTCAATTGCATA+AGG | 0.410609 | 8_1:-36352958 | None:intergenic |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 8_1:-36351288 | None:intergenic |
| TGTTCGTCACTTCCAAGTTA+TGG | 0.427026 | 8_1:+36351478 | Msa1191640:CDS |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 8_1:+36351786 | Msa1191640:CDS |
| ATTGTACAGAAAACTGAAGT+TGG | 0.437712 | 8_1:+36351647 | Msa1191640:intron |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 8_1:+36351804 | Msa1191640:CDS |
| ACATCTTGTTTCAACCTCAC+TGG | 0.444084 | 8_1:-36351699 | None:intergenic |
| TTATATATTTGATGTGATCA+TGG | 0.457646 | 8_1:+36352900 | Msa1191640:three_prime_UTR |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 8_1:+36352797 | Msa1191640:CDS |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 8_1:-36351255 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 8_1:+36351767 | Msa1191640:CDS |
| AATAGCATCAACCAAAATTG+AGG | 0.486174 | 8_1:-36351343 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 8_1:-36351856 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 8_1:-36352856 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 8_1:+36351432 | Msa1191640:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 8_1:+36352655 | Msa1191640:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 8_1:+36352839 | Msa1191640:CDS |
| AGCATCAGTACACCATAACT+TGG | 0.527137 | 8_1:-36351490 | None:intergenic |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 8_1:+36351256 | Msa1191640:CDS |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 8_1:-36352329 | None:intergenic |
| AAAACTGAAGTTGGACTATG+TGG | 0.535532 | 8_1:+36351656 | Msa1191640:CDS |
| AGGACTTCATGTGGTGGAGA+GGG | 0.552325 | 8_1:-36351318 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 8_1:+36352706 | Msa1191640:CDS |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 8_1:-36352798 | None:intergenic |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 8_1:+36352251 | Msa1191640:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 8_1:-36351885 | None:intergenic |
| ATTTGATTCACTTTCCAGTG+AGG | 0.573209 | 8_1:+36351685 | Msa1191640:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 8_1:+36352851 | Msa1191640:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 8_1:+36352670 | Msa1191640:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 8_1:+36352373 | Msa1191640:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 8_1:+36352281 | Msa1191640:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 8_1:+36352270 | Msa1191640:CDS |
| GAAATATGCTTGCTTGAGGG+TGG | 0.585318 | 8_1:-36351544 | None:intergenic |
| GAGGACTTCATGTGGTGGAG+AGG | 0.593214 | 8_1:-36351319 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 8_1:+36351402 | Msa1191640:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 8_1:-36351417 | None:intergenic |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 8_1:+36351239 | Msa1191640:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 8_1:+36352855 | Msa1191640:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 8_1:+36352850 | Msa1191640:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 8_1:+36352701 | Msa1191640:CDS |
| GAGCTGGGAGTACAAGGTCA+TGG | 0.624397 | 8_1:-36351515 | None:intergenic |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 8_1:-36352296 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 8_1:+36351705 | Msa1191640:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 8_1:+36351725 | Msa1191640:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.663706 | 8_1:-36351338 | None:intergenic |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 8_1:+36352669 | Msa1191640:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 8_1:+36352284 | Msa1191640:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 8_1:+36352671 | Msa1191640:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 8_1:-36351324 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 8_1:-36351327 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | chr8_1:36352472-36352491 | None:intergenic | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | chr8_1:36352557-36352576 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr8_1:36352736-36352755 | Msa1191640:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr8_1:36352737-36352756 | Msa1191640:CDS | 15.0% |
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | chr8_1:36352472-36352491 | None:intergenic | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | chr8_1:36352557-36352576 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr8_1:36352736-36352755 | Msa1191640:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr8_1:36352737-36352756 | Msa1191640:CDS | 15.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | chr8_1:36351750-36351769 | Msa1191640:CDS | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr8_1:36351758-36351777 | Msa1191640:CDS | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | chr8_1:36352033-36352052 | None:intergenic | 20.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | chr8_1:36352034-36352053 | None:intergenic | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | chr8_1:36352186-36352205 | Msa1191640:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | chr8_1:36352424-36352443 | None:intergenic | 20.0% |
| !! | TTAGCCAATTAAAAATTTAG+TGG | + | chr8_1:36352428-36352447 | Msa1191640:intron | 20.0% |
| !!! | AACTCCACTAAATTTTTAAT+TGG | - | chr8_1:36352435-36352454 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCTTTCTCAA+TGG | + | chr8_1:36352484-36352503 | Msa1191640:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | - | chr8_1:36352770-36352789 | None:intergenic | 20.0% |
| !!! | ATAAACAAAAATTTGCTCAA+GGG | - | chr8_1:36352884-36352903 | None:intergenic | 20.0% |
| !!! | TATAAACAAAAATTTGCTCA+AGG | - | chr8_1:36352885-36352904 | None:intergenic | 20.0% |
| !! | TTATATATTTGATGTGATCA+TGG | + | chr8_1:36352900-36352919 | Msa1191640:three_prime_UTR | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | chr8_1:36351750-36351769 | Msa1191640:CDS | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr8_1:36351758-36351777 | Msa1191640:CDS | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | chr8_1:36352033-36352052 | None:intergenic | 20.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | chr8_1:36352034-36352053 | None:intergenic | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | chr8_1:36352186-36352205 | Msa1191640:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | chr8_1:36352424-36352443 | None:intergenic | 20.0% |
| !! | TTAGCCAATTAAAAATTTAG+TGG | + | chr8_1:36352428-36352447 | Msa1191640:intron | 20.0% |
| !!! | AACTCCACTAAATTTTTAAT+TGG | - | chr8_1:36352435-36352454 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCTTTCTCAA+TGG | + | chr8_1:36352484-36352503 | Msa1191640:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | - | chr8_1:36352770-36352789 | None:intergenic | 20.0% |
| !!! | ATAAACAAAAATTTGCTCAA+GGG | - | chr8_1:36352884-36352903 | None:intergenic | 20.0% |
| !!! | TATAAACAAAAATTTGCTCA+AGG | - | chr8_1:36352885-36352904 | None:intergenic | 20.0% |
| !! | TTATATATTTGATGTGATCA+TGG | + | chr8_1:36352900-36352919 | Msa1191640:three_prime_UTR | 20.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr8_1:36351759-36351778 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr8_1:36351757-36351776 | Msa1191640:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr8_1:36351785-36351804 | Msa1191640:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr8_1:36351786-36351805 | Msa1191640:CDS | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | chr8_1:36351938-36351957 | Msa1191640:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | chr8_1:36351967-36351986 | None:intergenic | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | + | chr8_1:36352061-36352080 | Msa1191640:intron | 25.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | chr8_1:36352193-36352212 | Msa1191640:intron | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | - | chr8_1:36352611-36352630 | None:intergenic | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | chr8_1:36352625-36352644 | Msa1191640:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr8_1:36352822-36352841 | Msa1191640:CDS | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr8_1:36351759-36351778 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr8_1:36351757-36351776 | Msa1191640:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | chr8_1:36351785-36351804 | Msa1191640:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | chr8_1:36351786-36351805 | Msa1191640:CDS | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | chr8_1:36351938-36351957 | Msa1191640:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | chr8_1:36351967-36351986 | None:intergenic | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | + | chr8_1:36352061-36352080 | Msa1191640:intron | 25.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | chr8_1:36352193-36352212 | Msa1191640:intron | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | - | chr8_1:36352611-36352630 | None:intergenic | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | chr8_1:36352625-36352644 | Msa1191640:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr8_1:36352822-36352841 | Msa1191640:CDS | 25.0% |
| AATAGCATCAACCAAAATTG+AGG | - | chr8_1:36351346-36351365 | None:intergenic | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | + | chr8_1:36351402-36351421 | Msa1191640:CDS | 30.0% | |
| AATCACAAACGTAAAAGAAG+CGG | - | chr8_1:36351593-36351612 | None:intergenic | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | chr8_1:36351647-36351666 | Msa1191640:intron | 30.0% | |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | chr8_1:36351961-36351980 | Msa1191640:intron | 30.0% |
| CAGATATTTCCCTTTACATA+TGG | + | chr8_1:36352021-36352040 | Msa1191640:intron | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | chr8_1:36352105-36352124 | Msa1191640:intron | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | chr8_1:36352196-36352215 | Msa1191640:intron | 30.0% | |
| AAAATAAATGATCTGCACCT+GGG | - | chr8_1:36352393-36352412 | None:intergenic | 30.0% | |
| TAAAATAAATGATCTGCACC+TGG | - | chr8_1:36352394-36352413 | None:intergenic | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr8_1:36352702-36352721 | None:intergenic | 30.0% |
| AATAGCATCAACCAAAATTG+AGG | - | chr8_1:36351346-36351365 | None:intergenic | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | + | chr8_1:36351402-36351421 | Msa1191640:CDS | 30.0% | |
| AATCACAAACGTAAAAGAAG+CGG | - | chr8_1:36351593-36351612 | None:intergenic | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | chr8_1:36351647-36351666 | Msa1191640:intron | 30.0% | |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | chr8_1:36351961-36351980 | Msa1191640:intron | 30.0% |
| CAGATATTTCCCTTTACATA+TGG | + | chr8_1:36352021-36352040 | Msa1191640:intron | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | chr8_1:36352105-36352124 | Msa1191640:intron | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | chr8_1:36352196-36352215 | Msa1191640:intron | 30.0% | |
| AAAATAAATGATCTGCACCT+GGG | - | chr8_1:36352393-36352412 | None:intergenic | 30.0% | |
| TAAAATAAATGATCTGCACC+TGG | - | chr8_1:36352394-36352413 | None:intergenic | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr8_1:36352702-36352721 | None:intergenic | 30.0% |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | chr8_1:36351282-36351301 | Msa1191640:CDS | 35.0% |
| GATGTTCCAAAACCTATCAT+TGG | - | chr8_1:36351291-36351310 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCTATTGAAAC+AGG | + | chr8_1:36351351-36351370 | Msa1191640:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | chr8_1:36351428-36351447 | None:intergenic | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | chr8_1:36351432-36351451 | Msa1191640:CDS | 35.0% |
| AGAGAAATATGCTTGCTTGA+GGG | - | chr8_1:36351550-36351569 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | chr8_1:36351551-36351570 | None:intergenic | 35.0% | |
| AAAACTGAAGTTGGACTATG+TGG | + | chr8_1:36351656-36351675 | Msa1191640:CDS | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | chr8_1:36351685-36351704 | Msa1191640:CDS | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | chr8_1:36351705-36351724 | Msa1191640:CDS | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | chr8_1:36351725-36351744 | Msa1191640:CDS | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr8_1:36351819-36351838 | Msa1191640:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | chr8_1:36351877-36351896 | None:intergenic | 35.0% |
| TATCTGACGTCTATGAGTAT+CGG | - | chr8_1:36352007-36352026 | None:intergenic | 35.0% | |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | chr8_1:36352302-36352321 | Msa1191640:CDS | 35.0% |
| CAATGGTCAAACTTTAGACT+TGG | + | chr8_1:36352501-36352520 | Msa1191640:intron | 35.0% | |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | chr8_1:36352513-36352532 | Msa1191640:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | chr8_1:36352545-36352564 | None:intergenic | 35.0% |
| TTATGCAGATAGCACTAAGA+TGG | + | chr8_1:36352655-36352674 | Msa1191640:intron | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | chr8_1:36352670-36352689 | Msa1191640:CDS | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr8_1:36352703-36352722 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr8_1:36352701-36352720 | Msa1191640:CDS | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | chr8_1:36352706-36352725 | Msa1191640:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr8_1:36352839-36352858 | Msa1191640:CDS | 35.0% |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | chr8_1:36351282-36351301 | Msa1191640:CDS | 35.0% |
| GATGTTCCAAAACCTATCAT+TGG | - | chr8_1:36351291-36351310 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCTATTGAAAC+AGG | + | chr8_1:36351351-36351370 | Msa1191640:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | chr8_1:36351428-36351447 | None:intergenic | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | chr8_1:36351432-36351451 | Msa1191640:CDS | 35.0% |
| AGAGAAATATGCTTGCTTGA+GGG | - | chr8_1:36351550-36351569 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | chr8_1:36351551-36351570 | None:intergenic | 35.0% | |
| AAAACTGAAGTTGGACTATG+TGG | + | chr8_1:36351656-36351675 | Msa1191640:CDS | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | chr8_1:36351685-36351704 | Msa1191640:CDS | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | chr8_1:36351705-36351724 | Msa1191640:CDS | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | chr8_1:36351725-36351744 | Msa1191640:CDS | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr8_1:36351819-36351838 | Msa1191640:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | chr8_1:36351877-36351896 | None:intergenic | 35.0% |
| TATCTGACGTCTATGAGTAT+CGG | - | chr8_1:36352007-36352026 | None:intergenic | 35.0% | |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | chr8_1:36352302-36352321 | Msa1191640:CDS | 35.0% |
| CAATGGTCAAACTTTAGACT+TGG | + | chr8_1:36352501-36352520 | Msa1191640:intron | 35.0% | |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | chr8_1:36352513-36352532 | Msa1191640:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | chr8_1:36352545-36352564 | None:intergenic | 35.0% |
| TTATGCAGATAGCACTAAGA+TGG | + | chr8_1:36352655-36352674 | Msa1191640:intron | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | chr8_1:36352670-36352689 | Msa1191640:CDS | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr8_1:36352703-36352722 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr8_1:36352701-36352720 | Msa1191640:CDS | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | chr8_1:36352706-36352725 | Msa1191640:CDS | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr8_1:36352839-36352858 | Msa1191640:CDS | 35.0% |
| CAGAGGTGATGCTAAATTCA+GGG | + | chr8_1:36351256-36351275 | Msa1191640:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr8_1:36351276-36351295 | Msa1191640:CDS | 40.0% | |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | chr8_1:36351332-36351351 | Msa1191640:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr8_1:36351341-36351360 | None:intergenic | 40.0% | |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | chr8_1:36351458-36351477 | None:intergenic | 40.0% |
| TGTTCGTCACTTCCAAGTTA+TGG | + | chr8_1:36351478-36351497 | Msa1191640:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | chr8_1:36351493-36351512 | None:intergenic | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | chr8_1:36351702-36351721 | None:intergenic | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr8_1:36351767-36351786 | Msa1191640:CDS | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | + | chr8_1:36351804-36351823 | Msa1191640:CDS | 40.0% | |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | chr8_1:36351859-36351878 | None:intergenic | 40.0% |
| AATCTCTCCTGCAGTTAATC+AGG | + | chr8_1:36351878-36351897 | Msa1191640:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | chr8_1:36351888-36351907 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | chr8_1:36352213-36352232 | Msa1191640:intron | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | chr8_1:36352220-36352239 | Msa1191640:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | chr8_1:36352221-36352240 | Msa1191640:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr8_1:36352251-36352270 | Msa1191640:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | chr8_1:36352270-36352289 | Msa1191640:CDS | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr8_1:36352299-36352318 | None:intergenic | 40.0% |
| ATTGAATTCTCCATCACTGC+AGG | - | chr8_1:36352332-36352351 | None:intergenic | 40.0% | |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | + | chr8_1:36352373-36352392 | Msa1191640:CDS | 40.0% |
| CTAAGATGGATATACCAGCA+AGG | + | chr8_1:36352669-36352688 | Msa1191640:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | chr8_1:36352671-36352690 | Msa1191640:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | + | chr8_1:36352797-36352816 | Msa1191640:CDS | 40.0% | |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | - | chr8_1:36352801-36352820 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | chr8_1:36352849-36352868 | None:intergenic | 40.0% |
| CAGAGGTGATGCTAAATTCA+GGG | + | chr8_1:36351256-36351275 | Msa1191640:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr8_1:36351276-36351295 | Msa1191640:CDS | 40.0% | |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | chr8_1:36351332-36351351 | Msa1191640:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr8_1:36351341-36351360 | None:intergenic | 40.0% | |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | chr8_1:36351458-36351477 | None:intergenic | 40.0% |
| TGTTCGTCACTTCCAAGTTA+TGG | + | chr8_1:36351478-36351497 | Msa1191640:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | chr8_1:36351493-36351512 | None:intergenic | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | chr8_1:36351702-36351721 | None:intergenic | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr8_1:36351767-36351786 | Msa1191640:CDS | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | + | chr8_1:36351804-36351823 | Msa1191640:CDS | 40.0% | |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | chr8_1:36351859-36351878 | None:intergenic | 40.0% |
| AATCTCTCCTGCAGTTAATC+AGG | + | chr8_1:36351878-36351897 | Msa1191640:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | chr8_1:36351888-36351907 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | chr8_1:36352213-36352232 | Msa1191640:intron | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | chr8_1:36352220-36352239 | Msa1191640:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | chr8_1:36352221-36352240 | Msa1191640:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr8_1:36352251-36352270 | Msa1191640:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | chr8_1:36352270-36352289 | Msa1191640:CDS | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr8_1:36352299-36352318 | None:intergenic | 40.0% |
| ATTGAATTCTCCATCACTGC+AGG | - | chr8_1:36352332-36352351 | None:intergenic | 40.0% | |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | + | chr8_1:36352373-36352392 | Msa1191640:CDS | 40.0% |
| CTAAGATGGATATACCAGCA+AGG | + | chr8_1:36352669-36352688 | Msa1191640:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | chr8_1:36352671-36352690 | Msa1191640:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | + | chr8_1:36352797-36352816 | Msa1191640:CDS | 40.0% | |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | - | chr8_1:36352801-36352820 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | chr8_1:36352849-36352868 | None:intergenic | 40.0% |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr8_1:36351239-36351258 | Msa1191640:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | chr8_1:36351258-36351277 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | chr8_1:36351255-36351274 | Msa1191640:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | - | chr8_1:36351330-36351349 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | - | chr8_1:36351524-36351543 | None:intergenic | 45.0% |
| GAAATATGCTTGCTTGAGGG+TGG | - | chr8_1:36351547-36351566 | None:intergenic | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | chr8_1:36352222-36352241 | Msa1191640:intron | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | chr8_1:36352850-36352869 | Msa1191640:CDS | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | chr8_1:36352851-36352870 | Msa1191640:CDS | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr8_1:36351239-36351258 | Msa1191640:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | chr8_1:36351258-36351277 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | chr8_1:36351255-36351274 | Msa1191640:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | - | chr8_1:36351330-36351349 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | - | chr8_1:36351524-36351543 | None:intergenic | 45.0% |
| GAAATATGCTTGCTTGAGGG+TGG | - | chr8_1:36351547-36351566 | None:intergenic | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | chr8_1:36352222-36352241 | Msa1191640:intron | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | chr8_1:36352850-36352869 | Msa1191640:CDS | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | chr8_1:36352851-36352870 | Msa1191640:CDS | 45.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | chr8_1:36351321-36351340 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr8_1:36351420-36351439 | None:intergenic | 50.0% | |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | chr8_1:36351533-36351552 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | chr8_1:36351534-36351553 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | + | chr8_1:36352319-36352338 | Msa1191640:CDS | 50.0% |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | chr8_1:36351321-36351340 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr8_1:36351420-36351439 | None:intergenic | 50.0% | |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | chr8_1:36351533-36351552 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | chr8_1:36351534-36351553 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | + | chr8_1:36352319-36352338 | Msa1191640:CDS | 50.0% |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | chr8_1:36351322-36351341 | None:intergenic | 55.0% |
| GAGGTGAGGACTTCATGTGG+TGG | - | chr8_1:36351327-36351346 | None:intergenic | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | - | chr8_1:36351518-36351537 | None:intergenic | 55.0% |
| GTGAGTGCATGGTCACCACT+AGG | + | chr8_1:36352281-36352300 | Msa1191640:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr8_1:36352284-36352303 | Msa1191640:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | - | chr8_1:36352686-36352705 | None:intergenic | 55.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | chr8_1:36352855-36352874 | Msa1191640:CDS | 55.0% | |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | chr8_1:36351322-36351341 | None:intergenic | 55.0% |
| GAGGTGAGGACTTCATGTGG+TGG | - | chr8_1:36351327-36351346 | None:intergenic | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | - | chr8_1:36351518-36351537 | None:intergenic | 55.0% |
| GTGAGTGCATGGTCACCACT+AGG | + | chr8_1:36352281-36352300 | Msa1191640:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr8_1:36352284-36352303 | Msa1191640:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | - | chr8_1:36352686-36352705 | None:intergenic | 55.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | chr8_1:36352855-36352874 | Msa1191640:CDS | 55.0% | |
| GCCGTCCCACAGCTCTTCCA+AGG | - | chr8_1:36352859-36352878 | None:intergenic | 65.0% | |
| GCCGTCCCACAGCTCTTCCA+AGG | - | chr8_1:36352859-36352878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 36351237 | 36352967 | 36351237 | ID=Msa1191640;Name=Msa1191640 |
| chr8_1 | mRNA | 36351237 | 36352967 | 36351237 | ID=Msa1191640-mRNA-1;Parent=Msa1191640;Name=Msa1191640-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.33|0.25|1|1|1|4|80|312 |
| chr8_1 | exon | 36351237 | 36351553 | 36351237 | ID=Msa1191640-mRNA-1:exon:11983;Parent=Msa1191640-mRNA-1 |
| chr8_1 | exon | 36351656 | 36351899 | 36351656 | ID=Msa1191640-mRNA-1:exon:11984;Parent=Msa1191640-mRNA-1 |
| chr8_1 | exon | 36352242 | 36352394 | 36352242 | ID=Msa1191640-mRNA-1:exon:11985;Parent=Msa1191640-mRNA-1 |
| chr8_1 | exon | 36352663 | 36352967 | 36352663 | ID=Msa1191640-mRNA-1:exon:11986;Parent=Msa1191640-mRNA-1 |
| chr8_1 | CDS | 36351237 | 36351553 | 36351237 | ID=Msa1191640-mRNA-1:cds;Parent=Msa1191640-mRNA-1 |
| chr8_1 | CDS | 36351656 | 36351899 | 36351656 | ID=Msa1191640-mRNA-1:cds;Parent=Msa1191640-mRNA-1 |
| chr8_1 | CDS | 36352242 | 36352394 | 36352242 | ID=Msa1191640-mRNA-1:cds;Parent=Msa1191640-mRNA-1 |
| chr8_1 | CDS | 36352663 | 36352887 | 36352663 | ID=Msa1191640-mRNA-1:cds;Parent=Msa1191640-mRNA-1 |
| chr8_1 | three_prime_UTR | 36352888 | 36352967 | 36352888 | ID=Msa1191640-mRNA-1:three_prime_utr;Parent=Msa1191640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
