Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0243160 | Msa0551050 | 0.813943 | 1.981144e-51 | -8.615850e-47 |
| Msa0551050 | Msa1356460 | 0.804044 | 2.609765e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTCCATTTAGTCTAATA+AGG | 0.407308 | 4_1:+46733167 | None:intergenic |
| TGTAAGGATATCAGTACTTA+CGG | 0.500279 | 4_1:-46733252 | Msa0551050:intron |
| AACTAACTTCGAATACAGCT+TGG | 0.544300 | 4_1:+46734565 | None:intergenic |
| TCAGTACTTACGGAATTGAA+TGG | 0.549336 | 4_1:-46733242 | Msa0551050:CDS |
| TAGTCTAATAAGGCTACAGC+AGG | 0.555361 | 4_1:+46733177 | None:intergenic |
| TGTGGTATTTGACAGAGATA+AGG | 0.575882 | 4_1:-46733215 | Msa0551050:CDS |
| TGTTAGTGGAATCTCTGCCA+AGG | 0.576612 | 4_1:-46734541 | Msa0551050:CDS |
| TCTAATAAGGCTACAGCAGG+TGG | 0.576927 | 4_1:+46733180 | None:intergenic |
| AATAAGGCTACAGCAGGTGG+TGG | 0.585251 | 4_1:+46733183 | None:intergenic |
| ACGGAATTGAATGGCTAATG+TGG | 0.603375 | 4_1:-46733233 | Msa0551050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTGTTAAAGACATT+AGG | + | chr4_1:46733323-46733342 | None:intergenic | 15.0% |
| !! | AAATCAAAGAAACAAATTAA+TGG | - | chr4_1:46733339-46733358 | Msa0551050:intron | 15.0% |
| !!! | TTCACAAATGTAATTTTTTT+TGG | - | chr4_1:46733461-46733480 | Msa0551050:intron | 15.0% |
| !! | GACTATATATTTAGAAAATT+GGG | + | chr4_1:46733530-46733549 | None:intergenic | 15.0% |
| !! | TGACTATATATTTAGAAAAT+TGG | + | chr4_1:46733531-46733550 | None:intergenic | 15.0% |
| !!! | ACTTTTGCATAAAAATAAAA+GGG | - | chr4_1:46734427-46734446 | Msa0551050:intron | 15.0% |
| !!! | ATTTTATTGTTAAAGACATT+AGG | + | chr4_1:46733323-46733342 | None:intergenic | 15.0% |
| !! | AAATCAAAGAAACAAATTAA+TGG | - | chr4_1:46733339-46733358 | Msa0551050:intron | 15.0% |
| !!! | TTCACAAATGTAATTTTTTT+TGG | - | chr4_1:46733461-46733480 | Msa0551050:intron | 15.0% |
| !! | GACTATATATTTAGAAAATT+GGG | + | chr4_1:46733530-46733549 | None:intergenic | 15.0% |
| !! | TGACTATATATTTAGAAAAT+TGG | + | chr4_1:46733531-46733550 | None:intergenic | 15.0% |
| !!! | ACTTTTGCATAAAAATAAAA+GGG | - | chr4_1:46734427-46734446 | Msa0551050:intron | 15.0% |
| !!! | TAATTGCCCTTTTTATTATA+AGG | - | chr4_1:46733436-46733455 | Msa0551050:intron | 20.0% |
| !!! | TGAAAGCCTTATAATAAAAA+GGG | + | chr4_1:46733445-46733464 | None:intergenic | 20.0% |
| !! | TATATATTTAGAAAATTGGG+AGG | + | chr4_1:46733527-46733546 | None:intergenic | 20.0% |
| !!! | CTTTTATTTTTATGCAAAAG+TGG | + | chr4_1:46734428-46734447 | None:intergenic | 20.0% |
| !!! | CACTTTTGCATAAAAATAAA+AGG | - | chr4_1:46734426-46734445 | Msa0551050:intron | 20.0% |
| !!! | CTTTTGCATAAAAATAAAAG+GGG | - | chr4_1:46734428-46734447 | Msa0551050:intron | 20.0% |
| !! | CATATATAAATACACATCAT+TGG | + | chr4_1:46734865-46734884 | None:intergenic | 20.0% |
| !!! | TAATTGCCCTTTTTATTATA+AGG | - | chr4_1:46733436-46733455 | Msa0551050:intron | 20.0% |
| !!! | TGAAAGCCTTATAATAAAAA+GGG | + | chr4_1:46733445-46733464 | None:intergenic | 20.0% |
| !! | TATATATTTAGAAAATTGGG+AGG | + | chr4_1:46733527-46733546 | None:intergenic | 20.0% |
| !!! | CTTTTATTTTTATGCAAAAG+TGG | + | chr4_1:46734428-46734447 | None:intergenic | 20.0% |
| !!! | CACTTTTGCATAAAAATAAA+AGG | - | chr4_1:46734426-46734445 | Msa0551050:intron | 20.0% |
| !!! | CTTTTGCATAAAAATAAAAG+GGG | - | chr4_1:46734428-46734447 | Msa0551050:intron | 20.0% |
| !! | CATATATAAATACACATCAT+TGG | + | chr4_1:46734865-46734884 | None:intergenic | 20.0% |
| !!! | GTTTTTATTTCCATCAAGAA+GGG | + | chr4_1:46733253-46733272 | None:intergenic | 25.0% |
| !!! | TGTTTTTATTTCCATCAAGA+AGG | + | chr4_1:46733254-46733273 | None:intergenic | 25.0% |
| ! | TGATGGAAATAAAAACAAAC+AGG | - | chr4_1:46733257-46733276 | Msa0551050:intron | 25.0% |
| ! | TTGTTAAAGACATTAGGAAA+TGG | + | chr4_1:46733317-46733336 | None:intergenic | 25.0% |
| !! | GTGAAAGCCTTATAATAAAA+AGG | + | chr4_1:46733446-46733465 | None:intergenic | 25.0% |
| !! | TCTATCTTTCATATTTTCCT+TGG | + | chr4_1:46733624-46733643 | None:intergenic | 25.0% |
| !!! | GATTTTAAATGGTTTTGAAG+CGG | + | chr4_1:46733892-46733911 | None:intergenic | 25.0% |
| !! | TGAAATTTCTGCATATTTTG+TGG | + | chr4_1:46734356-46734375 | None:intergenic | 25.0% |
| ! | TATATATGTACATGCATGTA+AGG | - | chr4_1:46734877-46734896 | Msa0551050:intron | 25.0% |
| !!! | GTTTTTATTTCCATCAAGAA+GGG | + | chr4_1:46733253-46733272 | None:intergenic | 25.0% |
| !!! | TGTTTTTATTTCCATCAAGA+AGG | + | chr4_1:46733254-46733273 | None:intergenic | 25.0% |
| ! | TGATGGAAATAAAAACAAAC+AGG | - | chr4_1:46733257-46733276 | Msa0551050:intron | 25.0% |
| ! | TTGTTAAAGACATTAGGAAA+TGG | + | chr4_1:46733317-46733336 | None:intergenic | 25.0% |
| !! | GTGAAAGCCTTATAATAAAA+AGG | + | chr4_1:46733446-46733465 | None:intergenic | 25.0% |
| !! | TCTATCTTTCATATTTTCCT+TGG | + | chr4_1:46733624-46733643 | None:intergenic | 25.0% |
| !!! | GATTTTAAATGGTTTTGAAG+CGG | + | chr4_1:46733892-46733911 | None:intergenic | 25.0% |
| !! | TGAAATTTCTGCATATTTTG+TGG | + | chr4_1:46734356-46734375 | None:intergenic | 25.0% |
| ! | TATATATGTACATGCATGTA+AGG | - | chr4_1:46734877-46734896 | Msa0551050:intron | 25.0% |
| !!! | TCTGCTATTGGTTTAAGTTT+TGG | + | chr4_1:46733222-46733241 | None:intergenic | 30.0% |
| GAAATAGATAAATGAAGCAG+AGG | + | chr4_1:46733291-46733310 | None:intergenic | 30.0% | |
| TAAAGACATTAGGAAATGGT+AGG | + | chr4_1:46733313-46733332 | None:intergenic | 30.0% | |
| ! | TATGTTTTACTCCAAAACCA+GGG | + | chr4_1:46733418-46733437 | None:intergenic | 30.0% |
| ! | TTATGTTTTACTCCAAAACC+AGG | + | chr4_1:46733419-46733438 | None:intergenic | 30.0% |
| !!! | TTCGAAGTTAGTTTTGTTAG+TGG | - | chr4_1:46733590-46733609 | Msa0551050:intron | 30.0% |
| !! | GATTTTTCAGTTACTGAAGT+AGG | + | chr4_1:46733665-46733684 | None:intergenic | 30.0% |
| !!! | TGACATGATTTTTTAGCATC+AGG | + | chr4_1:46733692-46733711 | None:intergenic | 30.0% |
| AGCTTCATCTCGTTAAAAAT+CGG | + | chr4_1:46733787-46733806 | None:intergenic | 30.0% | |
| ! | AGAGTTCAGGTGATTTTAAA+TGG | + | chr4_1:46733903-46733922 | None:intergenic | 30.0% |
| !!! | ATGCATTTTTAGTAGAGTTC+AGG | + | chr4_1:46733916-46733935 | None:intergenic | 30.0% |
| !! | GAGAGCTTTATATTTGGTTT+TGG | - | chr4_1:46734001-46734020 | Msa0551050:intron | 30.0% |
| AATGTTAGTCATGTGAGTAT+GGG | + | chr4_1:46734178-46734197 | None:intergenic | 30.0% | |
| AAATGTTAGTCATGTGAGTA+TGG | + | chr4_1:46734179-46734198 | None:intergenic | 30.0% | |
| TACTCACATGACTAACATTT+AGG | - | chr4_1:46734179-46734198 | Msa0551050:intron | 30.0% | |
| TGCAAAAGTGGAAAATGTAA+GGG | + | chr4_1:46734416-46734435 | None:intergenic | 30.0% | |
| ATGCAAAAGTGGAAAATGTA+AGG | + | chr4_1:46734417-46734436 | None:intergenic | 30.0% | |
| AAAAAAGAATCTTCAGTGCA+AGG | - | chr4_1:46734533-46734552 | Msa0551050:CDS | 30.0% | |
| ATGTTGGAGAAAATATGAAG+CGG | + | chr4_1:46734664-46734683 | None:intergenic | 30.0% | |
| !!! | AGTATGGGTTTTGGTTTATT+TGG | + | chr4_1:46734734-46734753 | None:intergenic | 30.0% |
| TGTAAGGATATCAGTACTTA+CGG | - | chr4_1:46734893-46734912 | Msa0551050:intron | 30.0% | |
| !!! | TCTGCTATTGGTTTAAGTTT+TGG | + | chr4_1:46733222-46733241 | None:intergenic | 30.0% |
| GAAATAGATAAATGAAGCAG+AGG | + | chr4_1:46733291-46733310 | None:intergenic | 30.0% | |
| TAAAGACATTAGGAAATGGT+AGG | + | chr4_1:46733313-46733332 | None:intergenic | 30.0% | |
| ! | TATGTTTTACTCCAAAACCA+GGG | + | chr4_1:46733418-46733437 | None:intergenic | 30.0% |
| ! | TTATGTTTTACTCCAAAACC+AGG | + | chr4_1:46733419-46733438 | None:intergenic | 30.0% |
| !!! | TTCGAAGTTAGTTTTGTTAG+TGG | - | chr4_1:46733590-46733609 | Msa0551050:intron | 30.0% |
| !! | GATTTTTCAGTTACTGAAGT+AGG | + | chr4_1:46733665-46733684 | None:intergenic | 30.0% |
| !!! | TGACATGATTTTTTAGCATC+AGG | + | chr4_1:46733692-46733711 | None:intergenic | 30.0% |
| AGCTTCATCTCGTTAAAAAT+CGG | + | chr4_1:46733787-46733806 | None:intergenic | 30.0% | |
| ! | AGAGTTCAGGTGATTTTAAA+TGG | + | chr4_1:46733903-46733922 | None:intergenic | 30.0% |
| !!! | ATGCATTTTTAGTAGAGTTC+AGG | + | chr4_1:46733916-46733935 | None:intergenic | 30.0% |
| !! | GAGAGCTTTATATTTGGTTT+TGG | - | chr4_1:46734001-46734020 | Msa0551050:intron | 30.0% |
| AATGTTAGTCATGTGAGTAT+GGG | + | chr4_1:46734178-46734197 | None:intergenic | 30.0% | |
| AAATGTTAGTCATGTGAGTA+TGG | + | chr4_1:46734179-46734198 | None:intergenic | 30.0% | |
| TACTCACATGACTAACATTT+AGG | - | chr4_1:46734179-46734198 | Msa0551050:intron | 30.0% | |
| TGCAAAAGTGGAAAATGTAA+GGG | + | chr4_1:46734416-46734435 | None:intergenic | 30.0% | |
| ATGCAAAAGTGGAAAATGTA+AGG | + | chr4_1:46734417-46734436 | None:intergenic | 30.0% | |
| AAAAAAGAATCTTCAGTGCA+AGG | - | chr4_1:46734533-46734552 | Msa0551050:CDS | 30.0% | |
| ATGTTGGAGAAAATATGAAG+CGG | + | chr4_1:46734664-46734683 | None:intergenic | 30.0% | |
| !!! | AGTATGGGTTTTGGTTTATT+TGG | + | chr4_1:46734734-46734753 | None:intergenic | 30.0% |
| TGTAAGGATATCAGTACTTA+CGG | - | chr4_1:46734893-46734912 | Msa0551050:intron | 30.0% | |
| GGAAATTATTGAACCAGTGA+GGG | + | chr4_1:46733201-46733220 | None:intergenic | 35.0% | |
| TGGAAATTATTGAACCAGTG+AGG | + | chr4_1:46733202-46733221 | None:intergenic | 35.0% | |
| AGGGAAATATCTTCTGCTAT+TGG | + | chr4_1:46733234-46733253 | None:intergenic | 35.0% | |
| GAAGATATTTCCCTTCTTGA+TGG | - | chr4_1:46733240-46733259 | Msa0551050:CDS | 35.0% | |
| GATAAATGAAGCAGAGGATT+AGG | + | chr4_1:46733285-46733304 | None:intergenic | 35.0% | |
| ! | AGTCAATTTTGTAGACGTGT+TGG | - | chr4_1:46733546-46733565 | Msa0551050:intron | 35.0% |
| AACTAACTTCGAATACAGCT+TGG | + | chr4_1:46733583-46733602 | None:intergenic | 35.0% | |
| ! | CGTCTCGAAGAATTTTGAAT+TGG | + | chr4_1:46733727-46733746 | None:intergenic | 35.0% |
| GCTTCATCTCGTTAAAAATC+GGG | + | chr4_1:46733786-46733805 | None:intergenic | 35.0% | |
| ! | GAGATGAAGCTCTTCAATTT+TGG | - | chr4_1:46733796-46733815 | Msa0551050:intron | 35.0% |
| TTTGGTTAAACATCGTGTCA+CGG | - | chr4_1:46733814-46733833 | Msa0551050:intron | 35.0% | |
| ! | GATGACGAGAGCTTTATATT+TGG | - | chr4_1:46733995-46734014 | Msa0551050:intron | 35.0% |
| CTGTACTAGAAACTGATCTT+TGG | - | chr4_1:46734044-46734063 | Msa0551050:intron | 35.0% | |
| TACACGAATTGAAGATTGCT+TGG | - | chr4_1:46734073-46734092 | Msa0551050:intron | 35.0% | |
| TCACATGACTAACATTTAGG+AGG | - | chr4_1:46734182-46734201 | Msa0551050:intron | 35.0% | |
| ACTAACATTTAGGAGGAATC+AGG | - | chr4_1:46734189-46734208 | Msa0551050:intron | 35.0% | |
| GCTTTCCTGTAAACATACAT+GGG | + | chr4_1:46734229-46734248 | None:intergenic | 35.0% | |
| GAGACAATCTGCAACTTAAT+TGG | + | chr4_1:46734251-46734270 | None:intergenic | 35.0% | |
| ! | TGTGTTATTCGTCCCATATT+TGG | + | chr4_1:46734275-46734294 | None:intergenic | 35.0% |
| TTTGGATACCATCATCCAAT+GGG | + | chr4_1:46734572-46734591 | None:intergenic | 35.0% | |
| ATTTGGATACCATCATCCAA+TGG | + | chr4_1:46734573-46734592 | None:intergenic | 35.0% | |
| !! | ATTTCAAGACTTGCTAAGCA+AGG | + | chr4_1:46734606-46734625 | None:intergenic | 35.0% |
| CTTAGCAAGTCTTGAAATGA+AGG | - | chr4_1:46734608-46734627 | Msa0551050:intron | 35.0% | |
| !! | GGTTTATTTGGTGTGAAAAG+AGG | + | chr4_1:46734722-46734741 | None:intergenic | 35.0% |
| !! | TGTAAGAGAAGTATGGGTTT+TGG | + | chr4_1:46734743-46734762 | None:intergenic | 35.0% |
| ! | GTGTTGTGTAAGAGAAGTAT+GGG | + | chr4_1:46734749-46734768 | None:intergenic | 35.0% |
| TGTGTTGTGTAAGAGAAGTA+TGG | + | chr4_1:46734750-46734769 | None:intergenic | 35.0% | |
| TCAGTACTTACGGAATTGAA+TGG | - | chr4_1:46734903-46734922 | Msa0551050:intron | 35.0% | |
| TGTGGTATTTGACAGAGATA+AGG | - | chr4_1:46734930-46734949 | Msa0551050:intron | 35.0% | |
| GGAAATTATTGAACCAGTGA+GGG | + | chr4_1:46733201-46733220 | None:intergenic | 35.0% | |
| TGGAAATTATTGAACCAGTG+AGG | + | chr4_1:46733202-46733221 | None:intergenic | 35.0% | |
| AGGGAAATATCTTCTGCTAT+TGG | + | chr4_1:46733234-46733253 | None:intergenic | 35.0% | |
| GAAGATATTTCCCTTCTTGA+TGG | - | chr4_1:46733240-46733259 | Msa0551050:CDS | 35.0% | |
| GATAAATGAAGCAGAGGATT+AGG | + | chr4_1:46733285-46733304 | None:intergenic | 35.0% | |
| ! | AGTCAATTTTGTAGACGTGT+TGG | - | chr4_1:46733546-46733565 | Msa0551050:intron | 35.0% |
| AACTAACTTCGAATACAGCT+TGG | + | chr4_1:46733583-46733602 | None:intergenic | 35.0% | |
| ! | CGTCTCGAAGAATTTTGAAT+TGG | + | chr4_1:46733727-46733746 | None:intergenic | 35.0% |
| GCTTCATCTCGTTAAAAATC+GGG | + | chr4_1:46733786-46733805 | None:intergenic | 35.0% | |
| ! | GAGATGAAGCTCTTCAATTT+TGG | - | chr4_1:46733796-46733815 | Msa0551050:intron | 35.0% |
| TTTGGTTAAACATCGTGTCA+CGG | - | chr4_1:46733814-46733833 | Msa0551050:intron | 35.0% | |
| ! | GATGACGAGAGCTTTATATT+TGG | - | chr4_1:46733995-46734014 | Msa0551050:intron | 35.0% |
| CTGTACTAGAAACTGATCTT+TGG | - | chr4_1:46734044-46734063 | Msa0551050:intron | 35.0% | |
| TACACGAATTGAAGATTGCT+TGG | - | chr4_1:46734073-46734092 | Msa0551050:intron | 35.0% | |
| TCACATGACTAACATTTAGG+AGG | - | chr4_1:46734182-46734201 | Msa0551050:intron | 35.0% | |
| ACTAACATTTAGGAGGAATC+AGG | - | chr4_1:46734189-46734208 | Msa0551050:intron | 35.0% | |
| GCTTTCCTGTAAACATACAT+GGG | + | chr4_1:46734229-46734248 | None:intergenic | 35.0% | |
| GAGACAATCTGCAACTTAAT+TGG | + | chr4_1:46734251-46734270 | None:intergenic | 35.0% | |
| ! | TGTGTTATTCGTCCCATATT+TGG | + | chr4_1:46734275-46734294 | None:intergenic | 35.0% |
| TTTGGATACCATCATCCAAT+GGG | + | chr4_1:46734572-46734591 | None:intergenic | 35.0% | |
| ATTTGGATACCATCATCCAA+TGG | + | chr4_1:46734573-46734592 | None:intergenic | 35.0% | |
| !! | ATTTCAAGACTTGCTAAGCA+AGG | + | chr4_1:46734606-46734625 | None:intergenic | 35.0% |
| CTTAGCAAGTCTTGAAATGA+AGG | - | chr4_1:46734608-46734627 | Msa0551050:intron | 35.0% | |
| !! | GGTTTATTTGGTGTGAAAAG+AGG | + | chr4_1:46734722-46734741 | None:intergenic | 35.0% |
| !! | TGTAAGAGAAGTATGGGTTT+TGG | + | chr4_1:46734743-46734762 | None:intergenic | 35.0% |
| ! | GTGTTGTGTAAGAGAAGTAT+GGG | + | chr4_1:46734749-46734768 | None:intergenic | 35.0% |
| TGTGTTGTGTAAGAGAAGTA+TGG | + | chr4_1:46734750-46734769 | None:intergenic | 35.0% | |
| TCAGTACTTACGGAATTGAA+TGG | - | chr4_1:46734903-46734922 | Msa0551050:intron | 35.0% | |
| TGTGGTATTTGACAGAGATA+AGG | - | chr4_1:46734930-46734949 | Msa0551050:intron | 35.0% | |
| !!! | CAGGGAGACTATACTGATTT+TGG | + | chr4_1:46733400-46733419 | None:intergenic | 40.0% |
| CAAAATCAGTATAGTCTCCC+TGG | - | chr4_1:46733398-46733417 | Msa0551050:intron | 40.0% | |
| GCCACGATTTCTATAAATCG+GGG | + | chr4_1:46733764-46733783 | None:intergenic | 40.0% | |
| GGCCACGATTTCTATAAATC+GGG | + | chr4_1:46733765-46733784 | None:intergenic | 40.0% | |
| GGGCCACGATTTCTATAAAT+CGG | + | chr4_1:46733766-46733785 | None:intergenic | 40.0% | |
| TTGAAGATTGCTTGGAGTAG+AGG | - | chr4_1:46734081-46734100 | Msa0551050:intron | 40.0% | |
| ! | TTGCTTGGAGTAGAGGTTTT+AGG | - | chr4_1:46734088-46734107 | Msa0551050:intron | 40.0% |
| TAAACATACATGGGTCTAGC+TGG | + | chr4_1:46734220-46734239 | None:intergenic | 40.0% | |
| CTAGACCCATGTATGTTTAC+AGG | - | chr4_1:46734221-46734240 | Msa0551050:intron | 40.0% | |
| GGCTTTCCTGTAAACATACA+TGG | + | chr4_1:46734230-46734249 | None:intergenic | 40.0% | |
| CAGATTGTCTCGCCAAATAT+GGG | - | chr4_1:46734260-46734279 | Msa0551050:intron | 40.0% | |
| AGAATCTTCAGTGCAAGGAA+TGG | - | chr4_1:46734538-46734557 | Msa0551050:CDS | 40.0% | |
| ! | GGTTGATTCAAGCATCCAAT+AGG | - | chr4_1:46734629-46734648 | Msa0551050:intron | 40.0% |
| ! | TATACTGCAACACACCCTTT+TGG | - | chr4_1:46734683-46734702 | Msa0551050:intron | 40.0% |
| GTAAAGAGGTAGTGCCAAAA+GGG | + | chr4_1:46734700-46734719 | None:intergenic | 40.0% | |
| TGGTGTGAAAAGAGGTAAAG+AGG | + | chr4_1:46734714-46734733 | None:intergenic | 40.0% | |
| ACGGAATTGAATGGCTAATG+TGG | - | chr4_1:46734912-46734931 | Msa0551050:intron | 40.0% | |
| TAGTCTAATAAGGCTACAGC+AGG | + | chr4_1:46734971-46734990 | None:intergenic | 40.0% | |
| !!! | CAGGGAGACTATACTGATTT+TGG | + | chr4_1:46733400-46733419 | None:intergenic | 40.0% |
| CAAAATCAGTATAGTCTCCC+TGG | - | chr4_1:46733398-46733417 | Msa0551050:intron | 40.0% | |
| GCCACGATTTCTATAAATCG+GGG | + | chr4_1:46733764-46733783 | None:intergenic | 40.0% | |
| GGCCACGATTTCTATAAATC+GGG | + | chr4_1:46733765-46733784 | None:intergenic | 40.0% | |
| GGGCCACGATTTCTATAAAT+CGG | + | chr4_1:46733766-46733785 | None:intergenic | 40.0% | |
| TTGAAGATTGCTTGGAGTAG+AGG | - | chr4_1:46734081-46734100 | Msa0551050:intron | 40.0% | |
| ! | TTGCTTGGAGTAGAGGTTTT+AGG | - | chr4_1:46734088-46734107 | Msa0551050:intron | 40.0% |
| TAAACATACATGGGTCTAGC+TGG | + | chr4_1:46734220-46734239 | None:intergenic | 40.0% | |
| CTAGACCCATGTATGTTTAC+AGG | - | chr4_1:46734221-46734240 | Msa0551050:intron | 40.0% | |
| GGCTTTCCTGTAAACATACA+TGG | + | chr4_1:46734230-46734249 | None:intergenic | 40.0% | |
| CAGATTGTCTCGCCAAATAT+GGG | - | chr4_1:46734260-46734279 | Msa0551050:intron | 40.0% | |
| AGAATCTTCAGTGCAAGGAA+TGG | - | chr4_1:46734538-46734557 | Msa0551050:CDS | 40.0% | |
| ! | GGTTGATTCAAGCATCCAAT+AGG | - | chr4_1:46734629-46734648 | Msa0551050:intron | 40.0% |
| ! | TATACTGCAACACACCCTTT+TGG | - | chr4_1:46734683-46734702 | Msa0551050:intron | 40.0% |
| GTAAAGAGGTAGTGCCAAAA+GGG | + | chr4_1:46734700-46734719 | None:intergenic | 40.0% | |
| TGGTGTGAAAAGAGGTAAAG+AGG | + | chr4_1:46734714-46734733 | None:intergenic | 40.0% | |
| ACGGAATTGAATGGCTAATG+TGG | - | chr4_1:46734912-46734931 | Msa0551050:intron | 40.0% | |
| TAGTCTAATAAGGCTACAGC+AGG | + | chr4_1:46734971-46734990 | None:intergenic | 40.0% | |
| ! | CAGTATAGTCTCCCTGGTTT+TGG | - | chr4_1:46733404-46733423 | Msa0551050:intron | 45.0% |
| TGTTAGTGGAATCTCTGCCA+AGG | - | chr4_1:46733604-46733623 | Msa0551050:intron | 45.0% | |
| ATAAATCGGGGCACGATTTG+AGG | + | chr4_1:46733752-46733771 | None:intergenic | 45.0% | |
| GCCCCGATTTATAGAAATCG+TGG | - | chr4_1:46733760-46733779 | Msa0551050:intron | 45.0% | |
| GGACAGAAAAGGAGGAAACA+AGG | + | chr4_1:46733871-46733890 | None:intergenic | 45.0% | |
| ! | TTTGAAGCGGACAGAAAAGG+AGG | + | chr4_1:46733879-46733898 | None:intergenic | 45.0% |
| !!! | GGTTTTGAAGCGGACAGAAA+AGG | + | chr4_1:46733882-46733901 | None:intergenic | 45.0% |
| AGGATGTCACTGAGGACATT+AGG | + | chr4_1:46733968-46733987 | None:intergenic | 45.0% | |
| GCAGATTGTCTCGCCAAATA+TGG | - | chr4_1:46734259-46734278 | Msa0551050:intron | 45.0% | |
| TTAGTCCACCCATTGGATGA+TGG | - | chr4_1:46734561-46734580 | Msa0551050:CDS | 45.0% | |
| AGCAAGGCAGAGGAAGAATT+TGG | + | chr4_1:46734590-46734609 | None:intergenic | 45.0% | |
| AAGCGGTTCGTGATTCCTAT+TGG | + | chr4_1:46734647-46734666 | None:intergenic | 45.0% | |
| GGGTGTGTTGCAGTATATGT+TGG | + | chr4_1:46734680-46734699 | None:intergenic | 45.0% | |
| GGTAAAGAGGTAGTGCCAAA+AGG | + | chr4_1:46734701-46734720 | None:intergenic | 45.0% | |
| TCTAATAAGGCTACAGCAGG+TGG | + | chr4_1:46734968-46734987 | None:intergenic | 45.0% | |
| ! | CAGTATAGTCTCCCTGGTTT+TGG | - | chr4_1:46733404-46733423 | Msa0551050:intron | 45.0% |
| TGTTAGTGGAATCTCTGCCA+AGG | - | chr4_1:46733604-46733623 | Msa0551050:intron | 45.0% | |
| ATAAATCGGGGCACGATTTG+AGG | + | chr4_1:46733752-46733771 | None:intergenic | 45.0% | |
| GCCCCGATTTATAGAAATCG+TGG | - | chr4_1:46733760-46733779 | Msa0551050:intron | 45.0% | |
| GGACAGAAAAGGAGGAAACA+AGG | + | chr4_1:46733871-46733890 | None:intergenic | 45.0% | |
| ! | TTTGAAGCGGACAGAAAAGG+AGG | + | chr4_1:46733879-46733898 | None:intergenic | 45.0% |
| !!! | GGTTTTGAAGCGGACAGAAA+AGG | + | chr4_1:46733882-46733901 | None:intergenic | 45.0% |
| AGGATGTCACTGAGGACATT+AGG | + | chr4_1:46733968-46733987 | None:intergenic | 45.0% | |
| GCAGATTGTCTCGCCAAATA+TGG | - | chr4_1:46734259-46734278 | Msa0551050:intron | 45.0% | |
| TTAGTCCACCCATTGGATGA+TGG | - | chr4_1:46734561-46734580 | Msa0551050:CDS | 45.0% | |
| AGCAAGGCAGAGGAAGAATT+TGG | + | chr4_1:46734590-46734609 | None:intergenic | 45.0% | |
| AAGCGGTTCGTGATTCCTAT+TGG | + | chr4_1:46734647-46734666 | None:intergenic | 45.0% | |
| GGGTGTGTTGCAGTATATGT+TGG | + | chr4_1:46734680-46734699 | None:intergenic | 45.0% | |
| GGTAAAGAGGTAGTGCCAAA+AGG | + | chr4_1:46734701-46734720 | None:intergenic | 45.0% | |
| TCTAATAAGGCTACAGCAGG+TGG | + | chr4_1:46734968-46734987 | None:intergenic | 45.0% | |
| AGAGATGACATGTCCCTCAC+TGG | - | chr4_1:46733185-46733204 | Msa0551050:CDS | 50.0% | |
| CATCTCGAAGGATGTCACTG+AGG | + | chr4_1:46733976-46733995 | None:intergenic | 50.0% | |
| AGCTCTCGTCATCATCTCGA+AGG | + | chr4_1:46733988-46734007 | None:intergenic | 50.0% | |
| ACATACATGGGTCTAGCTGG+TGG | + | chr4_1:46734217-46734236 | None:intergenic | 50.0% | |
| ! | GGAATGGTTAGTCCACCCAT+TGG | - | chr4_1:46734554-46734573 | Msa0551050:CDS | 50.0% |
| GGATACCATCATCCAATGGG+TGG | + | chr4_1:46734569-46734588 | None:intergenic | 50.0% | |
| !! | AGACTTGCTAAGCAAGGCAG+AGG | + | chr4_1:46734600-46734619 | None:intergenic | 50.0% |
| AATAAGGCTACAGCAGGTGG+TGG | + | chr4_1:46734965-46734984 | None:intergenic | 50.0% | |
| AGAGATGACATGTCCCTCAC+TGG | - | chr4_1:46733185-46733204 | Msa0551050:CDS | 50.0% | |
| CATCTCGAAGGATGTCACTG+AGG | + | chr4_1:46733976-46733995 | None:intergenic | 50.0% | |
| AGCTCTCGTCATCATCTCGA+AGG | + | chr4_1:46733988-46734007 | None:intergenic | 50.0% | |
| ACATACATGGGTCTAGCTGG+TGG | + | chr4_1:46734217-46734236 | None:intergenic | 50.0% | |
| ! | GGAATGGTTAGTCCACCCAT+TGG | - | chr4_1:46734554-46734573 | Msa0551050:CDS | 50.0% |
| GGATACCATCATCCAATGGG+TGG | + | chr4_1:46734569-46734588 | None:intergenic | 50.0% | |
| !! | AGACTTGCTAAGCAAGGCAG+AGG | + | chr4_1:46734600-46734619 | None:intergenic | 50.0% |
| AATAAGGCTACAGCAGGTGG+TGG | + | chr4_1:46734965-46734984 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 46733176 | 46734991 | 46733176 | ID=Msa0551050;Name=Msa0551050 |
| chr4_1 | mRNA | 46733176 | 46734991 | 46733176 | ID=Msa0551050-mRNA-1;Parent=Msa0551050;Name=Msa0551050-mRNA-1;_AED=0.72;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|69 |
| chr4_1 | exon | 46734986 | 46734991 | 46734986 | ID=Msa0551050-mRNA-1:exon:12639;Parent=Msa0551050-mRNA-1 |
| chr4_1 | exon | 46734497 | 46734607 | 46734497 | ID=Msa0551050-mRNA-1:exon:12638;Parent=Msa0551050-mRNA-1 |
| chr4_1 | exon | 46733176 | 46733268 | 46733176 | ID=Msa0551050-mRNA-1:exon:12637;Parent=Msa0551050-mRNA-1 |
| chr4_1 | CDS | 46734986 | 46734991 | 46734986 | ID=Msa0551050-mRNA-1:cds;Parent=Msa0551050-mRNA-1 |
| chr4_1 | CDS | 46734497 | 46734607 | 46734497 | ID=Msa0551050-mRNA-1:cds;Parent=Msa0551050-mRNA-1 |
| chr4_1 | CDS | 46733176 | 46733268 | 46733176 | ID=Msa0551050-mRNA-1:cds;Parent=Msa0551050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
