Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356460 | XP_013450693.1 | 91.118 | 304 | 14 | 4 | 1 | 294 | 1 | 301 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356460 | A0A072UG11 | 91.118 | 304 | 14 | 4 | 1 | 294 | 1 | 301 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008250 | Msa1356460 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0017420 | Msa1356460 | 0.812051 | 5.150771e-51 | -8.615850e-47 |
| Msa0030400 | Msa1356460 | 0.800303 | 1.535365e-48 | -8.615850e-47 |
| Msa0044320 | Msa1356460 | 0.806910 | 6.538534e-50 | -8.615850e-47 |
| Msa0045660 | Msa1356460 | 0.803814 | 2.912306e-49 | -8.615850e-47 |
| Msa0046360 | Msa1356460 | 0.858809 | 6.385630e-63 | -8.615850e-47 |
| Msa0051600 | Msa1356460 | 0.846730 | 1.807243e-59 | -8.615850e-47 |
| Msa0053960 | Msa1356460 | 0.806644 | 7.442073e-50 | -8.615850e-47 |
| Msa0090760 | Msa1356460 | 0.828371 | 9.329600e-55 | -8.615850e-47 |
| Msa0091340 | Msa1356460 | 0.808233 | 3.424269e-50 | -8.615850e-47 |
| Msa0101940 | Msa1356460 | 0.809196 | 2.132309e-50 | -8.615850e-47 |
| Msa0105600 | Msa1356460 | 0.819398 | 1.186258e-52 | -8.615850e-47 |
| Msa1353270 | Msa1356460 | 0.832659 | 8.333532e-56 | -8.615850e-47 |
| Msa1356410 | Msa1356460 | 0.830412 | 2.980688e-55 | -8.615850e-47 |
| Msa1356460 | Msa1371840 | 0.810996 | 8.731044e-51 | -8.615850e-47 |
| Msa0618260 | Msa1356460 | 0.816668 | 4.911296e-52 | -8.615850e-47 |
| Msa0622690 | Msa1356460 | 0.819158 | 1.344891e-52 | -8.615850e-47 |
| Msa0633720 | Msa1356460 | 0.813377 | 2.639999e-51 | -8.615850e-47 |
| Msa0637910 | Msa1356460 | 0.806190 | 9.278901e-50 | -8.615850e-47 |
| Msa0638500 | Msa1356460 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0645780 | Msa1356460 | 0.831621 | 1.504975e-55 | -8.615850e-47 |
| Msa0645820 | Msa1356460 | 0.812921 | 3.323521e-51 | -8.615850e-47 |
| Msa0646340 | Msa1356460 | 0.835523 | 1.597097e-56 | -8.615850e-47 |
| Msa0650360 | Msa1356460 | 0.825326 | 4.982739e-54 | -8.615850e-47 |
| Msa0650860 | Msa1356460 | 0.808174 | 3.525821e-50 | -8.615850e-47 |
| Msa0657820 | Msa1356460 | 0.810858 | 9.351921e-51 | -8.615850e-47 |
| Msa0668160 | Msa1356460 | 0.831303 | 1.801623e-55 | -8.615850e-47 |
| Msa0685880 | Msa1356460 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
| Msa0697180 | Msa1356460 | 0.801361 | 9.337086e-49 | -8.615850e-47 |
| Msa0726000 | Msa1356460 | 0.816133 | 6.471378e-52 | -8.615850e-47 |
| Msa0775580 | Msa1356460 | 0.824556 | 7.573553e-54 | -8.615850e-47 |
| Msa0789800 | Msa1356460 | 0.828129 | 1.066991e-54 | -8.615850e-47 |
| Msa0814780 | Msa1356460 | 0.801138 | 1.037132e-48 | -8.615850e-47 |
| Msa0824140 | Msa1356460 | 0.801637 | 8.198488e-49 | -8.615850e-47 |
| Msa0121080 | Msa1356460 | 0.801215 | 1.000389e-48 | -8.615850e-47 |
| Msa0130760 | Msa1356460 | 0.806295 | 8.815655e-50 | -8.615850e-47 |
| Msa0130800 | Msa1356460 | 0.810821 | 9.528400e-51 | -8.615850e-47 |
| Msa0131390 | Msa1356460 | 0.800157 | 1.643944e-48 | -8.615850e-47 |
| Msa0146110 | Msa1356460 | 0.829512 | 4.937816e-55 | -8.615850e-47 |
| Msa0164630 | Msa1356460 | 0.817609 | 3.017849e-52 | -8.615850e-47 |
| Msa0173850 | Msa1356460 | 0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0177490 | Msa1356460 | 0.804604 | 1.994349e-49 | -8.615850e-47 |
| Msa0178820 | Msa1356460 | -0.800573 | 1.353027e-48 | -8.615850e-47 |
| Msa0190400 | Msa1356460 | 0.804660 | 1.941880e-49 | -8.615850e-47 |
| Msa0204030 | Msa1356460 | 0.810275 | 1.250020e-50 | -8.615850e-47 |
| Msa0214730 | Msa1356460 | 0.832174 | 1.099064e-55 | -8.615850e-47 |
| Msa0216220 | Msa1356460 | 0.804659 | 1.942580e-49 | -8.615850e-47 |
| Msa1225820 | Msa1356460 | 0.802800 | 4.724759e-49 | -8.615850e-47 |
| Msa1233770 | Msa1356460 | 0.830929 | 2.226307e-55 | -8.615850e-47 |
| Msa1264560 | Msa1356460 | 0.833322 | 5.699543e-56 | -8.615850e-47 |
| Msa1267330 | Msa1356460 | 0.810371 | 1.191609e-50 | -8.615850e-47 |
| Msa1276080 | Msa1356460 | 0.820020 | 8.553074e-53 | -8.615850e-47 |
| Msa1296930 | Msa1356460 | 0.801108 | 1.052000e-48 | -8.615850e-47 |
| Msa0367310 | Msa1356460 | 0.800204 | 1.607990e-48 | -8.615850e-47 |
| Msa0416000 | Msa1356460 | 0.841730 | 3.980035e-58 | -8.615850e-47 |
| Msa0457380 | Msa1356460 | 0.836809 | 7.528759e-57 | -8.615850e-47 |
| Msa0459970 | Msa1356460 | 0.816517 | 5.308538e-52 | -8.615850e-47 |
| Msa0470030 | Msa1356460 | 0.811796 | 5.851424e-51 | -8.615850e-47 |
| Msa1014350 | Msa1356460 | 0.813445 | 2.549956e-51 | -8.615850e-47 |
| Msa1038820 | Msa1356460 | 0.801595 | 8.361218e-49 | -8.615850e-47 |
| Msa1061130 | Msa1356460 | 0.820167 | 7.914025e-53 | -8.615850e-47 |
| Msa1061520 | Msa1356460 | 0.830597 | 2.685271e-55 | -8.615850e-47 |
| Msa1070780 | Msa1356460 | 0.824397 | 8.250672e-54 | -8.615850e-47 |
| Msa1083850 | Msa1356460 | 0.816922 | 4.308231e-52 | -8.615850e-47 |
| Msa1096280 | Msa1356460 | 0.804458 | 2.139762e-49 | -8.615850e-47 |
| Msa1106830 | Msa1356460 | 0.807963 | 3.909640e-50 | -8.615850e-47 |
| Msa0243160 | Msa1356460 | 0.811670 | 6.234447e-51 | -8.615850e-47 |
| Msa0250170 | Msa1356460 | 0.821144 | 4.720944e-53 | -8.615850e-47 |
| Msa0252160 | Msa1356460 | 0.816509 | 5.331614e-52 | -8.615850e-47 |
| Msa0258380 | Msa1356460 | 0.844171 | 8.916811e-59 | -8.615850e-47 |
| Msa0258410 | Msa1356460 | 0.823097 | 1.664141e-53 | -8.615850e-47 |
| Msa0288220 | Msa1356460 | 0.811890 | 5.582730e-51 | -8.615850e-47 |
| Msa0309670 | Msa1356460 | 0.807587 | 4.700452e-50 | -8.615850e-47 |
| Msa0333900 | Msa1356460 | 0.803750 | 3.002679e-49 | -8.615850e-47 |
| Msa0334020 | Msa1356460 | 0.805688 | 1.183303e-49 | -8.615850e-47 |
| Msa0334980 | Msa1356460 | 0.805522 | 1.281578e-49 | -8.615850e-47 |
| Msa0335740 | Msa1356460 | 0.810419 | 1.163600e-50 | -8.615850e-47 |
| Msa0340440 | Msa1356460 | 0.811402 | 7.129456e-51 | -8.615850e-47 |
| Msa0350020 | Msa1356460 | 0.842268 | 2.868578e-58 | -8.615850e-47 |
| Msa0352200 | Msa1356460 | 0.851216 | 1.025492e-60 | -8.615850e-47 |
| Msa1108500 | Msa1356460 | 0.818099 | 2.338513e-52 | -8.615850e-47 |
| Msa1121290 | Msa1356460 | 0.805899 | 1.068333e-49 | -8.615850e-47 |
| Msa1122720 | Msa1356460 | 0.805655 | 1.202060e-49 | -8.615850e-47 |
| Msa1126170 | Msa1356460 | 0.808634 | 2.812473e-50 | -8.615850e-47 |
| Msa1130650 | Msa1356460 | 0.833573 | 4.935413e-56 | -8.615850e-47 |
| Msa1156210 | Msa1356460 | 0.805783 | 1.129803e-49 | -8.615850e-47 |
| Msa1156480 | Msa1356460 | 0.815165 | 1.063306e-51 | -8.615850e-47 |
| Msa1157030 | Msa1356460 | 0.826592 | 2.493204e-54 | -8.615850e-47 |
| Msa1165290 | Msa1356460 | 0.816952 | 4.241664e-52 | -8.615850e-47 |
| Msa1209800 | Msa1356460 | 0.811989 | 5.312274e-51 | -8.615850e-47 |
| Msa0487860 | Msa1356460 | 0.828465 | 8.857812e-55 | -8.615850e-47 |
| Msa0528740 | Msa1356460 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0528870 | Msa1356460 | 0.807012 | 6.220893e-50 | -8.615850e-47 |
| Msa0544600 | Msa1356460 | 0.822291 | 2.563010e-53 | -8.615850e-47 |
| Msa0551050 | Msa1356460 | 0.804044 | 2.609765e-49 | -8.615850e-47 |
| Msa0559890 | Msa1356460 | 0.807945 | 3.943654e-50 | -8.615850e-47 |
| Msa0573970 | Msa1356460 | 0.838318 | 3.087188e-57 | -8.615850e-47 |
| Msa0598260 | Msa1356460 | 0.800702 | 1.273064e-48 | -8.615850e-47 |
| Msa0853920 | Msa1356460 | 0.824961 | 6.078325e-54 | -8.615850e-47 |
| Msa0863250 | Msa1356460 | 0.804024 | 2.634732e-49 | -8.615850e-47 |
| Msa0868040 | Msa1356460 | 0.832554 | 8.847639e-56 | -8.615850e-47 |
| Msa0870010 | Msa1356460 | 0.824691 | 7.038585e-54 | -8.615850e-47 |
| Msa0931730 | Msa1356460 | 0.800096 | 1.691365e-48 | -8.615850e-47 |
| Msa0933220 | Msa1356460 | 0.818524 | 1.874505e-52 | -8.615850e-47 |
| Msa0968630 | Msa1356460 | 0.853834 | 1.838941e-61 | -8.615850e-47 |
| Msa0968780 | Msa1356460 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0970050 | Msa1356460 | 0.912387 | 2.064477e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356460 | MtrunA17_Chr6g0448911 | 91.118 | 304 | 14 | 4 | 1 | 294 | 1 | 301 | 0.0 | 541 |
| Msa1356460 | MtrunA17_Chr8g0355941 | 43.299 | 194 | 110 | 0 | 101 | 294 | 125 | 318 | 1.59e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356460 | AT5G08400.2 | 74.231 | 260 | 66 | 1 | 36 | 294 | 41 | 300 | 2.45e-151 | 426 |
| Msa1356460 | AT5G08400.1 | 65.870 | 293 | 66 | 2 | 36 | 294 | 41 | 333 | 3.24e-144 | 409 |
| Msa1356460 | AT4G29400.1 | 42.784 | 194 | 111 | 0 | 101 | 294 | 109 | 302 | 1.19e-59 | 192 |
Find 100 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCCTTCCACTCGATTT+TGG | 0.205892 | tig0015628:+69125 | Msa1356460:three_prime_UTR |
| ATGTTGAGTTCCAGGATAAT+TGG | 0.245524 | tig0015628:+67606 | Msa1356460:CDS |
| TTTCAAATCTGATATTAAAA+TGG | 0.254041 | tig0015628:+69386 | Msa1356460:three_prime_UTR |
| TAGTAATGTTTGTTATATTC+TGG | 0.255108 | tig0015628:+69492 | Msa1356460:three_prime_UTR |
| ATCCACTTGATTCATATATC+TGG | 0.260074 | tig0015628:+66160 | Msa1356460:CDS |
| ATTATCCTTCAAGTTGGATT+TGG | 0.271702 | tig0015628:-65482 | None:intergenic |
| GAAATTGATAAATCGATAAA+AGG | 0.289722 | tig0015628:+65511 | Msa1356460:CDS |
| GACTTTCGTCGCTCCAAAAC+TGG | 0.293871 | tig0015628:+65966 | Msa1356460:CDS |
| TATATCTGGTTTGAATTGTA+TGG | 0.296023 | tig0015628:+66174 | Msa1356460:CDS |
| ATTAAATTAGTTTGATGCTT+TGG | 0.321670 | tig0015628:+69435 | Msa1356460:three_prime_UTR |
| GTGGTCGGTCCATGGGTGAT+TGG | 0.323410 | tig0015628:+69033 | Msa1356460:CDS |
| CAGTTGAATCTCAAGGCTTC+TGG | 0.337515 | tig0015628:-69284 | None:intergenic |
| GATCGCGACGTTAATCTAAT+TGG | 0.338744 | tig0015628:+66207 | Msa1356460:CDS |
| GTTATCTTGTGGCCACAAAA+AGG | 0.341881 | tig0015628:+69525 | Msa1356460:three_prime_UTR |
| CTACAATTCTTCAAACTTGC+AGG | 0.343980 | tig0015628:+66360 | Msa1356460:CDS |
| CTGCAAGTTTGAAGAATTGT+AGG | 0.357092 | tig0015628:-66359 | None:intergenic |
| TCTCTGAATGGCAGATATCT+TGG | 0.380849 | tig0015628:+68990 | Msa1356460:intron |
| TGTTGAGTTCCAGGATAATT+GGG | 0.382704 | tig0015628:+67607 | Msa1356460:CDS |
| GGCAACAACAGATCCAGTTT+TGG | 0.385284 | tig0015628:-65979 | None:intergenic |
| TATCAGTGATGTTGAGTTCC+AGG | 0.390177 | tig0015628:+67598 | Msa1356460:CDS |
| AGGAGGCATATTGCAATTAT+CGG | 0.393039 | tig0015628:-69572 | None:intergenic |
| AAAATGGTGTATCAAAATAT+AGG | 0.400733 | tig0015628:+69402 | Msa1356460:three_prime_UTR |
| GCCTTCACAATTACCCTGCT+TGG | 0.401282 | tig0015628:+65605 | Msa1356460:CDS |
| CTCGTTCCTTCATGAGTTGA+GGG | 0.406081 | tig0015628:-65823 | None:intergenic |
| TTTAGTGATGAGAATAGAAT+AGG | 0.407194 | tig0015628:+69340 | Msa1356460:three_prime_UTR |
| AAGTACTTCAAGATATGAAC+AGG | 0.410954 | tig0015628:+69089 | Msa1356460:exon |
| TAAATCCAAATCCAACTTGA+AGG | 0.414755 | tig0015628:+65477 | Msa1356460:CDS |
| ACTCTGAGCTTAAATTAGTA+AGG | 0.421880 | tig0015628:-68854 | None:intergenic |
| TGGTCGGTCCATGGGTGATT+GGG | 0.440212 | tig0015628:+69034 | Msa1356460:CDS |
| CCTTCACAATTACCCTGCTT+GGG | 0.441292 | tig0015628:+65606 | Msa1356460:CDS |
| CCTCTCTATGACTCAGATAA+GGG | 0.452501 | tig0015628:+67545 | Msa1356460:CDS |
| TAACCCTCTTAAGTTGTGCT+TGG | 0.456619 | tig0015628:+69223 | Msa1356460:three_prime_UTR |
| GGGATGACAAACCATGAGTA+TGG | 0.459976 | tig0015628:+69062 | Msa1356460:CDS |
| AACACAGAACGAGTAGTAGA+AGG | 0.460648 | tig0015628:-65439 | None:intergenic |
| ATCATCATTATCCTTCAAGT+TGG | 0.460940 | tig0015628:-65488 | None:intergenic |
| ACTCAACATCACTGATATCA+TGG | 0.462409 | tig0015628:-67592 | None:intergenic |
| AAATTAGTTTGATGCTTTGG+TGG | 0.470940 | tig0015628:+69438 | Msa1356460:three_prime_UTR |
| GGTATGTCATGGGTCGACTT+GGG | 0.471237 | tig0015628:+66335 | Msa1356460:CDS |
| TCCTCTCTATGACTCAGATA+AGG | 0.474063 | tig0015628:+67544 | Msa1356460:CDS |
| ATACTCTCTAAAGGTGACTT+TGG | 0.475046 | tig0015628:-66003 | None:intergenic |
| TGGTATGTCATGGGTCGACT+TGG | 0.479500 | tig0015628:+66334 | Msa1356460:CDS |
| GCAACCAAGCACAACTTAAG+AGG | 0.484585 | tig0015628:-69227 | None:intergenic |
| GATAAATCGATAAAAGGATC+AGG | 0.491583 | tig0015628:+65517 | Msa1356460:CDS |
| TTGGTTGCCACTTGCCCGAT+AGG | 0.493315 | tig0015628:+69242 | Msa1356460:three_prime_UTR |
| GAATATGCCCTTGGATGAGA+TGG | 0.495831 | tig0015628:+69194 | Msa1356460:three_prime_UTR |
| AATACTTACTTAGCCCAAGC+AGG | 0.499987 | tig0015628:-65619 | None:intergenic |
| TTAAACCAAAATCGAGTGGA+AGG | 0.504826 | tig0015628:-69130 | None:intergenic |
| TCCATGGGTGATTGGGAAGA+GGG | 0.507364 | tig0015628:+69041 | Msa1356460:CDS |
| AGATTAACGTCGCGATCAGA+TGG | 0.511089 | tig0015628:-66201 | None:intergenic |
| GTCCATGGGTGATTGGGAAG+AGG | 0.512718 | tig0015628:+69040 | Msa1356460:CDS |
| TGATAATACATACTCTCTAA+AGG | 0.512928 | tig0015628:-66012 | None:intergenic |
| ACTGAACTACGTGCTGTACT+TGG | 0.518691 | tig0015628:+65785 | Msa1356460:CDS |
| TTCAAGATATGAACAGGGAC+TGG | 0.529542 | tig0015628:+69095 | Msa1356460:exon |
| CTCTCTAAAGGTGACTTTGG+AGG | 0.530558 | tig0015628:-66000 | None:intergenic |
| ACTCGTTCCTTCATGAGTTG+AGG | 0.531698 | tig0015628:-65824 | None:intergenic |
| GATTAAATTATGTTATCTTG+TGG | 0.535276 | tig0015628:+69514 | Msa1356460:three_prime_UTR |
| TTCTCTTACTAAAACAACAC+AGG | 0.537326 | tig0015628:-65277 | None:intergenic |
| TATTCAAGCATGGTATGTCA+TGG | 0.547139 | tig0015628:+66324 | Msa1356460:CDS |
| GCAGATGTCAAATTCGTCAA+TGG | 0.550855 | tig0015628:+67514 | Msa1356460:intron |
| TACGGTACGAAAATCCTATC+GGG | 0.551612 | tig0015628:-69256 | None:intergenic |
| AGTACTTGTAACCATACTCA+TGG | 0.562310 | tig0015628:-69073 | None:intergenic |
| CCCCTCTTCCCAATCACCCA+TGG | 0.562425 | tig0015628:-69042 | None:intergenic |
| ATGAAAATATTCACTTGAGG+AGG | 0.562833 | tig0015628:-69589 | None:intergenic |
| GTATGTCATGGGTCGACTTG+GGG | 0.564827 | tig0015628:+66336 | Msa1356460:CDS |
| TAAACCAAAATCGAGTGGAA+GGG | 0.565017 | tig0015628:-69129 | None:intergenic |
| AACCAGATATATGAATCAAG+TGG | 0.567513 | tig0015628:-66162 | None:intergenic |
| CATTGATAAGAATATGCCCT+TGG | 0.569700 | tig0015628:+69185 | Msa1356460:three_prime_UTR |
| TTATACAGGTTATTCAAGCA+TGG | 0.570039 | tig0015628:+66314 | Msa1356460:intron |
| CGAAAATCCTATCGGGCAAG+TGG | 0.573080 | tig0015628:-69249 | None:intergenic |
| ATACGGTACGAAAATCCTAT+CGG | 0.575607 | tig0015628:-69257 | None:intergenic |
| TAAACAAACCATCTCATCCA+AGG | 0.576487 | tig0015628:-69202 | None:intergenic |
| CCCAAGCAGGGTAATTGTGA+AGG | 0.584375 | tig0015628:-65606 | None:intergenic |
| TCAAGGCTTCTGGCTCCATA+CGG | 0.588364 | tig0015628:-69274 | None:intergenic |
| GGATCAGGAACCACTGCTAG+AGG | 0.592027 | tig0015628:+65532 | Msa1356460:CDS |
| GTTGAGTTCCAGGATAATTG+GGG | 0.594709 | tig0015628:+67608 | Msa1356460:CDS |
| GCACCGACTGTGATGACTGT+GGG | 0.594858 | tig0015628:-65405 | None:intergenic |
| ATTCAAGCATGGTATGTCAT+GGG | 0.596058 | tig0015628:+66325 | Msa1356460:CDS |
| TGGCAACCCTCAACTCATGA+AGG | 0.599388 | tig0015628:+65817 | Msa1356460:CDS |
| CTGATATCATGGAAAGATGA+CGG | 0.600764 | tig0015628:-67581 | None:intergenic |
| TGATGAGAATAGAATAGGAG+TGG | 0.604379 | tig0015628:+69345 | Msa1356460:three_prime_UTR |
| CCCTTATCTGAGTCATAGAG+AGG | 0.610008 | tig0015628:-67545 | None:intergenic |
| GCTGTACTTGGTGATAGTAT+TGG | 0.617009 | tig0015628:+65797 | Msa1356460:CDS |
| ATTATGAAAATATTCACTTG+AGG | 0.618545 | tig0015628:-69592 | None:intergenic |
| CGTACTTGCAGGGTGGACCT+CGG | 0.621915 | tig0015628:+68792 | Msa1356460:intron |
| AGCACCGACTGTGATGACTG+TGG | 0.630932 | tig0015628:-65406 | None:intergenic |
| CAACCAAGCACAACTTAAGA+GGG | 0.631505 | tig0015628:-69226 | None:intergenic |
| AGAAAGTGAGATGAGTAGCA+TGG | 0.631747 | tig0015628:+65348 | Msa1356460:exon |
| CCATGGGTGATTGGGAAGAG+GGG | 0.632965 | tig0015628:+69042 | Msa1356460:CDS |
| CAAAACGCAGTTGAATCTCA+AGG | 0.633472 | tig0015628:-69291 | None:intergenic |
| AAACAAACCATCTCATCCAA+GGG | 0.641221 | tig0015628:-69201 | None:intergenic |
| GTAGCATGGCGTGTGGATGT+TGG | 0.642842 | tig0015628:+65362 | Msa1356460:CDS |
| ATACTTACTTAGCCCAAGCA+GGG | 0.647476 | tig0015628:-65618 | None:intergenic |
| AGGTGCACCATACTAAAATG+TGG | 0.648399 | tig0015628:+69545 | Msa1356460:three_prime_UTR |
| TAATCTTCGACCTCTAGCAG+TGG | 0.651203 | tig0015628:-65542 | None:intergenic |
| CAAAATAATCAGCAGTACCG+AGG | 0.656761 | tig0015628:-68809 | None:intergenic |
| CACCGACTGTGATGACTGTG+GGG | 0.687610 | tig0015628:-65404 | None:intergenic |
| TTGAGTTCCAGGATAATTGG+GGG | 0.694550 | tig0015628:+67609 | Msa1356460:CDS |
| GAGATGAGTAGCATGGCGTG+TGG | 0.709846 | tig0015628:+65355 | Msa1356460:exon |
| AGTACTTCAAGATATGAACA+GGG | 0.718298 | tig0015628:+69090 | Msa1356460:exon |
| ACCGACTGTGATGACTGTGG+GGG | 0.776170 | tig0015628:-65403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | tig0015628:65697-65716 | Msa1356460:intron | 0.0% |
| !! | TTTAATTAGAATTGAAAATA+AGG | - | tig0015628:65888-65907 | None:intergenic | 10.0% |
| !!! | GTTTAATTAATTTTACTTTT+TGG | + | tig0015628:67377-67396 | Msa1356460:intron | 10.0% |
| !! | AAAAAAGATGTATATTTAAA+TGG | + | tig0015628:68437-68456 | Msa1356460:intron | 10.0% |
| !! | AAAAAGATGTATATTTAAAT+GGG | + | tig0015628:68438-68457 | Msa1356460:intron | 10.0% |
| !! | ATGTCAATTAATTATTATAC+AGG | + | tig0015628:66300-66319 | Msa1356460:intron | 15.0% |
| !! | TTTGAATTAAATACCAAAAT+TGG | - | tig0015628:66548-66567 | None:intergenic | 15.0% |
| !!! | AAAATTTCCTTACAAATTTT+AGG | + | tig0015628:67085-67104 | Msa1356460:intron | 15.0% |
| !! | GTTTAAAAAATGATATAAAG+AGG | + | tig0015628:69147-69166 | Msa1356460:three_prime_UTR | 15.0% |
| !!! | TTTTAATATCAGATTTGAAA+TGG | - | tig0015628:69386-69405 | None:intergenic | 15.0% |
| !! | TTTCAAATCTGATATTAAAA+TGG | + | tig0015628:69386-69405 | Msa1356460:three_prime_UTR | 15.0% |
| !! | ATATTATCCAAACAAAAATG+AGG | + | tig0015628:65312-65331 | Msa1356460:five_prime_UTR | 20.0% |
| !! | GAAATTGATAAATCGATAAA+AGG | + | tig0015628:65511-65530 | Msa1356460:CDS | 20.0% |
| !!! | AAATTTAGAATATGGTGATT+TGG | - | tig0015628:66083-66102 | None:intergenic | 20.0% |
| !! | ACTCTAATTATTATTTGTCA+TGG | + | tig0015628:66114-66133 | Msa1356460:intron | 20.0% |
| !! | CTCTAATTATTATTTGTCAT+GGG | + | tig0015628:66115-66134 | Msa1356460:intron | 20.0% |
| !!! | TAGATTTGATGATTTCATTA+AGG | - | tig0015628:66480-66499 | None:intergenic | 20.0% |
| !!! | TCATCAAATCTACTTTATTT+TGG | + | tig0015628:66488-66507 | Msa1356460:intron | 20.0% |
| !! | AAGAATTATAATATTCCAAG+AGG | - | tig0015628:66690-66709 | None:intergenic | 20.0% |
| !!! | CTTACTTGAACTAATTATTT+TGG | - | tig0015628:66793-66812 | None:intergenic | 20.0% |
| !!! | ATTCTTGTTTATTGATAACT+AGG | + | tig0015628:66841-66860 | Msa1356460:intron | 20.0% |
| !! | TATTAGTTGTTATACCTTAT+TGG | + | tig0015628:66923-66942 | Msa1356460:intron | 20.0% |
| !! | TTTAAGAAAAACATGCAAAT+AGG | - | tig0015628:67017-67036 | None:intergenic | 20.0% |
| !!! | TAAAGAGAACTTTTACATTA+TGG | + | tig0015628:67033-67052 | Msa1356460:intron | 20.0% |
| !!! | TATTTTGTAAACATTCTGAT+AGG | - | tig0015628:67324-67343 | None:intergenic | 20.0% |
| !! | ACTTCAATTCTTTGTTAAAA+GGG | - | tig0015628:67478-67497 | None:intergenic | 20.0% |
| !! | TACTTCAATTCTTTGTTAAA+AGG | - | tig0015628:67479-67498 | None:intergenic | 20.0% |
| !!! | TGAAGTATCTTTTTAATTGA+TGG | + | tig0015628:67492-67511 | Msa1356460:intron | 20.0% |
| !!! | TAAACTAGTAAAAAGGTTTT+AGG | - | tig0015628:67842-67861 | None:intergenic | 20.0% |
| !! | AAAGTCAATAAAAGCTATAA+AGG | - | tig0015628:68070-68089 | None:intergenic | 20.0% |
| !!! | ATATGACCAATAATTTTTCT+GGG | - | tig0015628:68413-68432 | None:intergenic | 20.0% |
| !! | AAAAATGATATAAAGAGGTT+CGG | + | tig0015628:69152-69171 | Msa1356460:three_prime_UTR | 20.0% |
| !! | AAAATGGTGTATCAAAATAT+AGG | + | tig0015628:69402-69421 | Msa1356460:three_prime_UTR | 20.0% |
| !!! | ATTAAATTAGTTTGATGCTT+TGG | + | tig0015628:69435-69454 | Msa1356460:three_prime_UTR | 20.0% |
| !!! | TAGTAATGTTTGTTATATTC+TGG | + | tig0015628:69492-69511 | Msa1356460:three_prime_UTR | 20.0% |
| !! | GATTAAATTATGTTATCTTG+TGG | + | tig0015628:69514-69533 | Msa1356460:three_prime_UTR | 20.0% |
| !! | ATTATGAAAATATTCACTTG+AGG | - | tig0015628:69595-69614 | None:intergenic | 20.0% |
| ! | GAAGATAGAATTCGAAAAAA+GGG | + | tig0015628:65939-65958 | Msa1356460:CDS | 25.0% |
| ! | TGATAATACATACTCTCTAA+AGG | - | tig0015628:66015-66034 | None:intergenic | 25.0% |
| !!! | TTTGGTCTATTTTGATGATA+TGG | - | tig0015628:66065-66084 | None:intergenic | 25.0% |
| !! | TATATCTGGTTTGAATTGTA+TGG | + | tig0015628:66174-66193 | Msa1356460:CDS | 25.0% |
| ! | TAAGCATGTAATGAATGAAT+GGG | - | tig0015628:66393-66412 | None:intergenic | 25.0% |
| !! | TTGATGATTTCATTAAGGTA+AGG | - | tig0015628:66475-66494 | None:intergenic | 25.0% |
| ! | ATAAAACTCATAAGCCAATT+GGG | - | tig0015628:66630-66649 | None:intergenic | 25.0% |
| ! | TATAAAACTCATAAGCCAAT+TGG | - | tig0015628:66631-66650 | None:intergenic | 25.0% |
| ! | TAACATAAAGACTACAAAAC+TGG | - | tig0015628:66714-66733 | None:intergenic | 25.0% |
| ! | TAGTAGATAGTAGTTTCAAT+TGG | + | tig0015628:66732-66751 | Msa1356460:intron | 25.0% |
| !!! | CTGTTAGTCTTTTTAATAAG+TGG | + | tig0015628:67657-67676 | Msa1356460:intron | 25.0% |
| ! | TATAGGCTAAACTAGTAAAA+AGG | - | tig0015628:67849-67868 | None:intergenic | 25.0% |
| ! | TCAATTATGAGTATACCATT+CGG | + | tig0015628:68090-68109 | Msa1356460:intron | 25.0% |
| ! | AAACCACAAGAGAAAAAATA+GGG | + | tig0015628:68259-68278 | Msa1356460:intron | 25.0% |
| !! | GATATGACCAATAATTTTTC+TGG | - | tig0015628:68414-68433 | None:intergenic | 25.0% |
| !!! | TAAATAGGTATTGAAAAGGA+GGG | + | tig0015628:68564-68583 | Msa1356460:intron | 25.0% |
| !! | TTTTCAATCAAAACTCATGT+TGG | + | tig0015628:68742-68761 | Msa1356460:intron | 25.0% |
| !!! | TTTTTTAAACCAAAATCGAG+TGG | - | tig0015628:69137-69156 | None:intergenic | 25.0% |
| ! | TTTAGTGATGAGAATAGAAT+AGG | + | tig0015628:69340-69359 | Msa1356460:three_prime_UTR | 25.0% |
| TTATCCAAACAAAAATGAGG+AGG | + | tig0015628:65315-65334 | Msa1356460:five_prime_UTR | 30.0% | |
| TAAATCCAAATCCAACTTGA+AGG | + | tig0015628:65477-65496 | Msa1356460:CDS | 30.0% | |
| !! | ATTATCCTTCAAGTTGGATT+TGG | - | tig0015628:65485-65504 | None:intergenic | 30.0% |
| ATCATCATTATCCTTCAAGT+TGG | - | tig0015628:65491-65510 | None:intergenic | 30.0% | |
| GATAAATCGATAAAAGGATC+AGG | + | tig0015628:65517-65536 | Msa1356460:CDS | 30.0% | |
| GGAAGATAGAATTCGAAAAA+AGG | + | tig0015628:65938-65957 | Msa1356460:CDS | 30.0% | |
| ! | GCGAGAACAAATTTAGAATA+TGG | - | tig0015628:66091-66110 | None:intergenic | 30.0% |
| ATCCACTTGATTCATATATC+TGG | + | tig0015628:66160-66179 | Msa1356460:CDS | 30.0% | |
| AACCAGATATATGAATCAAG+TGG | - | tig0015628:66165-66184 | None:intergenic | 30.0% | |
| TTATACAGGTTATTCAAGCA+TGG | + | tig0015628:66314-66333 | Msa1356460:intron | 30.0% | |
| AAGCATGTAATGAATGAATG+GGG | - | tig0015628:66392-66411 | None:intergenic | 30.0% | |
| GTAAGCATGTAATGAATGAA+TGG | - | tig0015628:66394-66413 | None:intergenic | 30.0% | |
| ! | TTTGAGGAATTTCAAGTCAA+CGG | - | tig0015628:66516-66535 | None:intergenic | 30.0% |
| CTTGAAATTCCTCAAAATTC+TGG | + | tig0015628:66520-66539 | Msa1356460:intron | 30.0% | |
| ACTAAATAGCAAATACCTCT+TGG | + | tig0015628:66672-66691 | Msa1356460:intron | 30.0% | |
| TTTCATGCTTCATATAGACA+GGG | + | tig0015628:66880-66899 | Msa1356460:intron | 30.0% | |
| ATAGCTACACTTCAAAAAGA+GGG | - | tig0015628:66968-66987 | None:intergenic | 30.0% | |
| TATAGCTACACTTCAAAAAG+AGG | - | tig0015628:66969-66988 | None:intergenic | 30.0% | |
| CTTCACTCCTAAAATTTGTA+AGG | - | tig0015628:67095-67114 | None:intergenic | 30.0% | |
| ! | CAACTAGCTCGAAAATATTT+TGG | + | tig0015628:67230-67249 | Msa1356460:intron | 30.0% |
| !!! | AGTGAAAAGGCATTTTATTG+TGG | - | tig0015628:67753-67772 | None:intergenic | 30.0% |
| ! | ATAAAATGCCTTTTCACTCT+AGG | + | tig0015628:67755-67774 | Msa1356460:intron | 30.0% |
| !!! | GTTTAGCCTATAGTTTTTTG+TGG | + | tig0015628:67857-67876 | Msa1356460:intron | 30.0% |
| ATGAGACCACAAAAAACTAT+AGG | - | tig0015628:67866-67885 | None:intergenic | 30.0% | |
| !! | CTCATTTTTCCTCTAACTAA+TGG | + | tig0015628:67881-67900 | Msa1356460:intron | 30.0% |
| GCTAAGAAGAGTAAATCAAA+TGG | - | tig0015628:67915-67934 | None:intergenic | 30.0% | |
| ! | TTTGACCATCTTTTCTGAAT+AGG | + | tig0015628:67992-68011 | Msa1356460:intron | 30.0% |
| ! | TTACTTTGAAGAGAAAGTTG+GGG | - | tig0015628:68024-68043 | None:intergenic | 30.0% |
| ! | GTTACTTTGAAGAGAAAGTT+GGG | - | tig0015628:68025-68044 | None:intergenic | 30.0% |
| AAAGGAGAAACTAAATGATC+AGG | - | tig0015628:68052-68071 | None:intergenic | 30.0% | |
| GAAACCACAAGAGAAAAAAT+AGG | + | tig0015628:68258-68277 | Msa1356460:intron | 30.0% | |
| ! | TTTAGCATCCTTTCTCTTTT+GGG | - | tig0015628:68290-68309 | None:intergenic | 30.0% |
| ATGGAGAATAGTTCAATTGT+AGG | + | tig0015628:68377-68396 | Msa1356460:intron | 30.0% | |
| AATAGTTCAATTGTAGGTAC+AGG | + | tig0015628:68383-68402 | Msa1356460:intron | 30.0% | |
| ATAGTTCAATTGTAGGTACA+GGG | + | tig0015628:68384-68403 | Msa1356460:intron | 30.0% | |
| ATATAATCAACTTCACCTAG+TGG | + | tig0015628:68509-68528 | Msa1356460:intron | 30.0% | |
| ! | CTTTTCAATACCTATTTAGC+TGG | - | tig0015628:68562-68581 | None:intergenic | 30.0% |
| !! | CAGCTAAATAGGTATTGAAA+AGG | + | tig0015628:68560-68579 | Msa1356460:intron | 30.0% |
| !! | CTAAATAGGTATTGAAAAGG+AGG | + | tig0015628:68563-68582 | Msa1356460:intron | 30.0% |
| TGCAGTAGAATATGAAAACA+CGG | + | tig0015628:68710-68729 | Msa1356460:intron | 30.0% | |
| TTTAAACAAATCGTACTTGC+AGG | + | tig0015628:68781-68800 | Msa1356460:intron | 30.0% | |
| TTAAACAAATCGTACTTGCA+GGG | + | tig0015628:68782-68801 | Msa1356460:intron | 30.0% | |
| ACTCTGAGCTTAAATTAGTA+AGG | - | tig0015628:68857-68876 | None:intergenic | 30.0% | |
| ! | GGTATCCAACAAATTGTTTT+TGG | + | tig0015628:69011-69030 | Msa1356460:CDS | 30.0% |
| !!! | ATCCAACAAATTGTTTTTGG+TGG | + | tig0015628:69014-69033 | Msa1356460:CDS | 30.0% |
| !!! | AACAAATTGTTTTTGGTGGT+CGG | + | tig0015628:69018-69037 | Msa1356460:CDS | 30.0% |
| AAGTACTTCAAGATATGAAC+AGG | + | tig0015628:69089-69108 | Msa1356460:exon | 30.0% | |
| AGTACTTCAAGATATGAACA+GGG | + | tig0015628:69090-69109 | Msa1356460:exon | 30.0% | |
| ! | AAATTAGTTTGATGCTTTGG+TGG | + | tig0015628:69438-69457 | Msa1356460:three_prime_UTR | 30.0% |
| ATGAAAATATTCACTTGAGG+AGG | - | tig0015628:69592-69611 | None:intergenic | 30.0% | |
| !! | CTTTCCTCCTCATTTTTGTT+TGG | - | tig0015628:65322-65341 | None:intergenic | 35.0% |
| CAAACAAAAATGAGGAGGAA+AGG | + | tig0015628:65320-65339 | Msa1356460:five_prime_UTR | 35.0% | |
| ! | ATACTCTCTAAAGGTGACTT+TGG | - | tig0015628:66006-66025 | None:intergenic | 35.0% |
| TATTCAAGCATGGTATGTCA+TGG | + | tig0015628:66324-66343 | Msa1356460:CDS | 35.0% | |
| ATTCAAGCATGGTATGTCAT+GGG | + | tig0015628:66325-66344 | Msa1356460:CDS | 35.0% | |
| CTGCAAGTTTGAAGAATTGT+AGG | - | tig0015628:66362-66381 | None:intergenic | 35.0% | |
| CTACAATTCTTCAAACTTGC+AGG | + | tig0015628:66360-66379 | Msa1356460:CDS | 35.0% | |
| AGTAGCAAATGAAAGTGAGT+GGG | - | tig0015628:66431-66450 | None:intergenic | 35.0% | |
| AAGTAGCAAATGAAAGTGAG+TGG | - | tig0015628:66432-66451 | None:intergenic | 35.0% | |
| ! | GCTACTTCTTCAGTTCTTTT+AGG | + | tig0015628:66445-66464 | Msa1356460:intron | 35.0% |
| !!! | AAATTGGTGCCAGAATTTTG+AGG | - | tig0015628:66532-66551 | None:intergenic | 35.0% |
| ! | CAAAATTCTGGCACCAATTT+TGG | + | tig0015628:66532-66551 | Msa1356460:intron | 35.0% |
| CTTTCATGCTTCATATAGAC+AGG | + | tig0015628:66879-66898 | Msa1356460:intron | 35.0% | |
| ATGAAAAGCTCAGTCCAATA+AGG | - | tig0015628:66940-66959 | None:intergenic | 35.0% | |
| AACTTGTATCAGAAGAGACA+TGG | - | tig0015628:67283-67302 | None:intergenic | 35.0% | |
| TCTCTTCTGATACAAGTTCT+AGG | + | tig0015628:67285-67304 | Msa1356460:intron | 35.0% | |
| AATAGCAAGAACAGCAACAA+TGG | + | tig0015628:67340-67359 | Msa1356460:intron | 35.0% | |
| TTTGGATTGTCTGATTGCTT+CGG | + | tig0015628:67395-67414 | Msa1356460:intron | 35.0% | |
| CTGATATCATGGAAAGATGA+CGG | - | tig0015628:67584-67603 | None:intergenic | 35.0% | |
| ACTCAACATCACTGATATCA+TGG | - | tig0015628:67595-67614 | None:intergenic | 35.0% | |
| ATGTTGAGTTCCAGGATAAT+TGG | + | tig0015628:67606-67625 | Msa1356460:CDS | 35.0% | |
| TGTTGAGTTCCAGGATAATT+GGG | + | tig0015628:67607-67626 | Msa1356460:CDS | 35.0% | |
| GAGAAAAGTCCATTAGTTAG+AGG | - | tig0015628:67893-67912 | None:intergenic | 35.0% | |
| TTGATTTACTCTTCTTAGCG+AGG | + | tig0015628:67916-67935 | Msa1356460:intron | 35.0% | |
| ATTTAGACATGTGTGTACTG+AGG | - | tig0015628:67958-67977 | None:intergenic | 35.0% | |
| CACACATGTCTAAATTACCT+AGG | + | tig0015628:67963-67982 | Msa1356460:intron | 35.0% | |
| ! | GGTTACTTTGAAGAGAAAGT+TGG | - | tig0015628:68026-68045 | None:intergenic | 35.0% |
| AGAAACTAAATGATCAGGAG+TGG | - | tig0015628:68047-68066 | None:intergenic | 35.0% | |
| TGAGTATACCATTCGGAAAA+AGG | + | tig0015628:68097-68116 | Msa1356460:intron | 35.0% | |
| !! | AGAGATGAGAGTATTACGAT+AGG | + | tig0015628:68188-68207 | Msa1356460:intron | 35.0% |
| !!! | CTACCCTATTTTTTCTCTTG+TGG | - | tig0015628:68265-68284 | None:intergenic | 35.0% |
| ! | CTTTAGCATCCTTTCTCTTT+TGG | - | tig0015628:68291-68310 | None:intergenic | 35.0% |
| GTCTTGTATTGTTTAGAGAG+CGG | + | tig0015628:68315-68334 | Msa1356460:intron | 35.0% | |
| TCTTGTATTGTTTAGAGAGC+GGG | + | tig0015628:68316-68335 | Msa1356460:intron | 35.0% | |
| CAATTGAACTATTCTCCATC+TGG | - | tig0015628:68376-68395 | None:intergenic | 35.0% | |
| GGGATATCATTAGACTTGAT+TGG | + | tig0015628:68458-68477 | Msa1356460:intron | 35.0% | |
| TGATTGGCAACAAAACATTG+TGG | + | tig0015628:68474-68493 | Msa1356460:intron | 35.0% | |
| TCACCTAGTGGAAAAAACAA+AGG | + | tig0015628:68521-68540 | Msa1356460:intron | 35.0% | |
| !!! | AAGCCTTTGTTTTTTCCACT+AGG | - | tig0015628:68527-68546 | None:intergenic | 35.0% |
| GTAGAATATGAAAACACGGT+AGG | + | tig0015628:68714-68733 | Msa1356460:intron | 35.0% | |
| AAAAACAATAAATGCGCGCT+TGG | - | tig0015628:68944-68963 | None:intergenic | 35.0% | |
| ATGATTGACCTTTCTCTGAA+TGG | + | tig0015628:68978-68997 | Msa1356460:intron | 35.0% | |
| GACCACCAAAAACAATTTGT+TGG | - | tig0015628:69019-69038 | None:intergenic | 35.0% | |
| AGTACTTGTAACCATACTCA+TGG | - | tig0015628:69076-69095 | None:intergenic | 35.0% | |
| TAAACCAAAATCGAGTGGAA+GGG | - | tig0015628:69132-69151 | None:intergenic | 35.0% | |
| TTAAACCAAAATCGAGTGGA+AGG | - | tig0015628:69133-69152 | None:intergenic | 35.0% | |
| CATTGATAAGAATATGCCCT+TGG | + | tig0015628:69185-69204 | Msa1356460:three_prime_UTR | 35.0% | |
| AAACAAACCATCTCATCCAA+GGG | - | tig0015628:69204-69223 | None:intergenic | 35.0% | |
| TAAACAAACCATCTCATCCA+AGG | - | tig0015628:69205-69224 | None:intergenic | 35.0% | |
| ATACGGTACGAAAATCCTAT+CGG | - | tig0015628:69260-69279 | None:intergenic | 35.0% | |
| TGATGAGAATAGAATAGGAG+TGG | + | tig0015628:69345-69364 | Msa1356460:three_prime_UTR | 35.0% | |
| ! | AGGAGGCATATTGCAATTAT+CGG | - | tig0015628:69575-69594 | None:intergenic | 35.0% |
| AGAAAGTGAGATGAGTAGCA+TGG | + | tig0015628:65348-65367 | Msa1356460:exon | 40.0% | |
| AACACAGAACGAGTAGTAGA+AGG | - | tig0015628:65442-65461 | None:intergenic | 40.0% | |
| ATACTTACTTAGCCCAAGCA+GGG | - | tig0015628:65621-65640 | None:intergenic | 40.0% | |
| AATACTTACTTAGCCCAAGC+AGG | - | tig0015628:65622-65641 | None:intergenic | 40.0% | |
| ! | CGTTTTTGCAAGCATCTTCA+AGG | - | tig0015628:65763-65782 | None:intergenic | 40.0% |
| ! | GCTGTACTTGGTGATAGTAT+TGG | + | tig0015628:65797-65816 | Msa1356460:CDS | 40.0% |
| AATTCTATCTTCCACCTGGA+AGG | - | tig0015628:65931-65950 | None:intergenic | 40.0% | |
| TTCGAATTCTATCTTCCACC+TGG | - | tig0015628:65935-65954 | None:intergenic | 40.0% | |
| GATCGCGACGTTAATCTAAT+TGG | + | tig0015628:66207-66226 | Msa1356460:CDS | 40.0% | |
| TCTCTACTACAATGCTTGCT+TGG | - | tig0015628:66587-66606 | None:intergenic | 40.0% | |
| ACTCATAAGCCAATTGGGTT+CGG | - | tig0015628:66625-66644 | None:intergenic | 40.0% | |
| TTGGTTGTCCAAGTTGTACT+AGG | + | tig0015628:66751-66770 | Msa1356460:intron | 40.0% | |
| TGTCCAAGTTGTACTAGGTA+CGG | + | tig0015628:66756-66775 | Msa1356460:intron | 40.0% | |
| GGAGTGAAGTTTATGTGTTG+AGG | + | tig0015628:67106-67125 | Msa1356460:intron | 40.0% | |
| ! | TGAGGTGACTTTTTGTGTGA+TGG | + | tig0015628:67124-67143 | Msa1356460:intron | 40.0% |
| GCAGATGTCAAATTCGTCAA+TGG | + | tig0015628:67514-67533 | Msa1356460:intron | 40.0% | |
| TCCTCTCTATGACTCAGATA+AGG | + | tig0015628:67544-67563 | Msa1356460:CDS | 40.0% | |
| CCTCTCTATGACTCAGATAA+GGG | + | tig0015628:67545-67564 | Msa1356460:CDS | 40.0% | |
| TATCAGTGATGTTGAGTTCC+AGG | + | tig0015628:67598-67617 | Msa1356460:CDS | 40.0% | |
| GTTGAGTTCCAGGATAATTG+GGG | + | tig0015628:67608-67627 | Msa1356460:CDS | 40.0% | |
| TTGAGTTCCAGGATAATTGG+GGG | + | tig0015628:67609-67628 | Msa1356460:CDS | 40.0% | |
| !!! | GTGGTTTTATGACCTTGCAA+TGG | + | tig0015628:67676-67695 | Msa1356460:intron | 40.0% |
| ! | AAATGCCTTTTCACTCTAGG+AGG | + | tig0015628:67758-67777 | Msa1356460:intron | 40.0% |
| AGATGGTCAAAACTAGTCCT+AGG | - | tig0015628:67983-68002 | None:intergenic | 40.0% | |
| ! | GACCATCTTTTCTGAATAGG+AGG | + | tig0015628:67995-68014 | Msa1356460:intron | 40.0% |
| AGCCTCCTATTCAGAAAAGA+TGG | - | tig0015628:68000-68019 | None:intergenic | 40.0% | |
| ! | CGATAATGCCTTTTTCCGAA+TGG | - | tig0015628:68108-68127 | None:intergenic | 40.0% |
| !! | TTCGGAAAAAGGCATTATCG+TGG | + | tig0015628:68108-68127 | Msa1356460:intron | 40.0% |
| ATTATCGTGGCATTGTCTCT+TGG | + | tig0015628:68121-68140 | Msa1356460:intron | 40.0% | |
| CTTGTATTGTTTAGAGAGCG+GGG | + | tig0015628:68317-68336 | Msa1356460:intron | 40.0% | |
| GGGAAAACTAGTTGAAACAC+CGG | + | tig0015628:68337-68356 | Msa1356460:intron | 40.0% | |
| TAGTTGAAACACCGGTATGA+AGG | + | tig0015628:68345-68364 | Msa1356460:intron | 40.0% | |
| ATCTGGTCTATCCTTCATAC+CGG | - | tig0015628:68359-68378 | None:intergenic | 40.0% | |
| GGGAGACCCAGAAAAATTAT+TGG | + | tig0015628:68404-68423 | Msa1356460:intron | 40.0% | |
| GGAAAAAACAAAGGCTTCGA+TGG | + | tig0015628:68530-68549 | Msa1356460:intron | 40.0% | |
| ATGGTTGTCACCAGCTAAAT+AGG | + | tig0015628:68549-68568 | Msa1356460:intron | 40.0% | |
| CAAAATAATCAGCAGTACCG+AGG | - | tig0015628:68812-68831 | None:intergenic | 40.0% | |
| GATATCTGCCATTCAGAGAA+AGG | - | tig0015628:68989-69008 | None:intergenic | 40.0% | |
| TCTCTGAATGGCAGATATCT+TGG | + | tig0015628:68990-69009 | Msa1356460:intron | 40.0% | |
| TTCAAGATATGAACAGGGAC+TGG | + | tig0015628:69095-69114 | Msa1356460:exon | 40.0% | |
| ! | TAACCCTCTTAAGTTGTGCT+TGG | + | tig0015628:69223-69242 | Msa1356460:three_prime_UTR | 40.0% |
| CAACCAAGCACAACTTAAGA+GGG | - | tig0015628:69229-69248 | None:intergenic | 40.0% | |
| TACGGTACGAAAATCCTATC+GGG | - | tig0015628:69259-69278 | None:intergenic | 40.0% | |
| ! | GATAGGATTTTCGTACCGTA+TGG | + | tig0015628:69259-69278 | Msa1356460:three_prime_UTR | 40.0% |
| CAAAACGCAGTTGAATCTCA+AGG | - | tig0015628:69294-69313 | None:intergenic | 40.0% | |
| GTTATCTTGTGGCCACAAAA+AGG | + | tig0015628:69525-69544 | Msa1356460:three_prime_UTR | 40.0% | |
| ! | TAGTATGGTGCACCTTTTTG+TGG | - | tig0015628:69540-69559 | None:intergenic | 40.0% |
| AGGTGCACCATACTAAAATG+TGG | + | tig0015628:69545-69564 | Msa1356460:three_prime_UTR | 40.0% | |
| !! | CGGTACACCACATTTTAGTA+TGG | - | tig0015628:69555-69574 | None:intergenic | 40.0% |
| TAATCTTCGACCTCTAGCAG+TGG | - | tig0015628:65545-65564 | None:intergenic | 45.0% | |
| CCTTCACAATTACCCTGCTT+GGG | + | tig0015628:65606-65625 | Msa1356460:CDS | 45.0% | |
| ACTGAACTACGTGCTGTACT+TGG | + | tig0015628:65785-65804 | Msa1356460:CDS | 45.0% | |
| ! | CTCGTTCCTTCATGAGTTGA+GGG | - | tig0015628:65826-65845 | None:intergenic | 45.0% |
| ACTCGTTCCTTCATGAGTTG+AGG | - | tig0015628:65827-65846 | None:intergenic | 45.0% | |
| GTGTTCCTTTCTTTCCTTCC+AGG | + | tig0015628:65914-65933 | Msa1356460:intron | 45.0% | |
| TTCCTTTCTTTCCTTCCAGG+TGG | + | tig0015628:65917-65936 | Msa1356460:intron | 45.0% | |
| TTCCACCTGGAAGGAAAGAA+AGG | - | tig0015628:65922-65941 | None:intergenic | 45.0% | |
| ! | GGCAACAACAGATCCAGTTT+TGG | - | tig0015628:65982-66001 | None:intergenic | 45.0% |
| ! | CTCTCTAAAGGTGACTTTGG+AGG | - | tig0015628:66003-66022 | None:intergenic | 45.0% |
| GGATTGAAGCTGCTAGCAAA+AGG | - | tig0015628:66144-66163 | None:intergenic | 45.0% | |
| AGATTAACGTCGCGATCAGA+TGG | - | tig0015628:66204-66223 | None:intergenic | 45.0% | |
| AGCAAATGAAAGTGAGTGGG+AGG | - | tig0015628:66428-66447 | None:intergenic | 45.0% | |
| CTCATAAGCCAATTGGGTTC+GGG | - | tig0015628:66624-66643 | None:intergenic | 45.0% | |
| GAACCGTACCTAGTACAACT+TGG | - | tig0015628:66762-66781 | None:intergenic | 45.0% | |
| TGTAAGCATGTGCTGTCAGA+TGG | - | tig0015628:67195-67214 | None:intergenic | 45.0% | |
| CCCTTATCTGAGTCATAGAG+AGG | - | tig0015628:67548-67567 | None:intergenic | 45.0% | |
| TATGACCTTGCAATGGACAG+AGG | + | tig0015628:67683-67702 | Msa1356460:intron | 45.0% | |
| TTCAACCTCTGTCCATTGCA+AGG | - | tig0015628:67691-67710 | None:intergenic | 45.0% | |
| CAGTTCCTCCTAGAGTGAAA+AGG | - | tig0015628:67766-67785 | None:intergenic | 45.0% | |
| TCTAGGAGGAACTGACAACA+TGG | + | tig0015628:67772-67791 | Msa1356460:intron | 45.0% | |
| GTCTCTTGGATATGTTTCGC+AGG | + | tig0015628:68135-68154 | Msa1356460:intron | 45.0% | |
| GGTATGAAGGATAGACCAGA+TGG | + | tig0015628:68358-68377 | Msa1356460:intron | 45.0% | |
| AACAAATCGTACTTGCAGGG+TGG | + | tig0015628:68785-68804 | Msa1356460:intron | 45.0% | |
| GGGATGACAAACCATGAGTA+TGG | + | tig0015628:69062-69081 | Msa1356460:CDS | 45.0% | |
| ! | TCATCCCTTCCACTCGATTT+TGG | + | tig0015628:69125-69144 | Msa1356460:three_prime_UTR | 45.0% |
| GAATATGCCCTTGGATGAGA+TGG | + | tig0015628:69194-69213 | Msa1356460:three_prime_UTR | 45.0% | |
| GCAACCAAGCACAACTTAAG+AGG | - | tig0015628:69230-69249 | None:intergenic | 45.0% | |
| CAGTTGAATCTCAAGGCTTC+TGG | - | tig0015628:69287-69306 | None:intergenic | 45.0% | |
| !! | TATTTAATTCAAATTTATAA+TGG | + | tig0015628:66555-66574 | Msa1356460:intron | 5.0% |
| GCCTTCACAATTACCCTGCT+TGG | + | tig0015628:65605-65624 | Msa1356460:CDS | 50.0% | |
| CCCAAGCAGGGTAATTGTGA+AGG | - | tig0015628:65609-65628 | None:intergenic | 50.0% | |
| TGGCAACCCTCAACTCATGA+AGG | + | tig0015628:65817-65836 | Msa1356460:CDS | 50.0% | |
| GACTTTCGTCGCTCCAAAAC+TGG | + | tig0015628:65966-65985 | Msa1356460:CDS | 50.0% | |
| TGGTATGTCATGGGTCGACT+TGG | + | tig0015628:66334-66353 | Msa1356460:CDS | 50.0% | |
| ! | GGTATGTCATGGGTCGACTT+GGG | + | tig0015628:66335-66354 | Msa1356460:CDS | 50.0% |
| !! | GTATGTCATGGGTCGACTTG+GGG | + | tig0015628:66336-66355 | Msa1356460:CDS | 50.0% |
| AAAAGGGAGCAGCTACACAC+AGG | - | tig0015628:67462-67481 | None:intergenic | 50.0% | |
| AAACACGCCCCCAATTATCC+TGG | - | tig0015628:67619-67638 | None:intergenic | 50.0% | |
| ! | AGGATAATTGGGGGCGTGTT+TGG | + | tig0015628:67618-67637 | Msa1356460:CDS | 50.0% |
| CATCTCTGCAACACTGAGCT+TGG | - | tig0015628:68175-68194 | None:intergenic | 50.0% | |
| GGGTAGCTCCCAAAAGAGAA+AGG | + | tig0015628:68279-68298 | Msa1356460:intron | 50.0% | |
| !!! | TGTTTTTGGTGGTCGGTCCA+TGG | + | tig0015628:69025-69044 | Msa1356460:CDS | 50.0% |
| !!! | GTTTTTGGTGGTCGGTCCAT+GGG | + | tig0015628:69026-69045 | Msa1356460:CDS | 50.0% |
| TCCATGGGTGATTGGGAAGA+GGG | + | tig0015628:69041-69060 | Msa1356460:CDS | 50.0% | |
| CGAAAATCCTATCGGGCAAG+TGG | - | tig0015628:69252-69271 | None:intergenic | 50.0% | |
| !! | TCAAGGCTTCTGGCTCCATA+CGG | - | tig0015628:69277-69296 | None:intergenic | 50.0% |
| GAGATGAGTAGCATGGCGTG+TGG | + | tig0015628:65355-65374 | Msa1356460:exon | 55.0% | |
| GTAGCATGGCGTGTGGATGT+TGG | + | tig0015628:65362-65381 | Msa1356460:CDS | 55.0% | |
| TCCCCCACAGTCATCACAGT+CGG | + | tig0015628:65402-65421 | Msa1356460:CDS | 55.0% | |
| ACCGACTGTGATGACTGTGG+GGG | - | tig0015628:65406-65425 | None:intergenic | 55.0% | |
| ! | CACCGACTGTGATGACTGTG+GGG | - | tig0015628:65407-65426 | None:intergenic | 55.0% |
| !! | GCACCGACTGTGATGACTGT+GGG | - | tig0015628:65408-65427 | None:intergenic | 55.0% |
| !! | AGCACCGACTGTGATGACTG+TGG | - | tig0015628:65409-65428 | None:intergenic | 55.0% |
| GGATCAGGAACCACTGCTAG+AGG | + | tig0015628:65532-65551 | Msa1356460:CDS | 55.0% | |
| TTGAGACGCCCGAACCCAAT+TGG | + | tig0015628:66613-66632 | Msa1356460:intron | 55.0% | |
| TGGTCGGTCCATGGGTGATT+GGG | + | tig0015628:69034-69053 | Msa1356460:CDS | 55.0% | |
| GTCCATGGGTGATTGGGAAG+AGG | + | tig0015628:69040-69059 | Msa1356460:CDS | 55.0% | |
| CCATGGGTGATTGGGAAGAG+GGG | + | tig0015628:69042-69061 | Msa1356460:CDS | 55.0% | |
| ! | TTGGTTGCCACTTGCCCGAT+AGG | + | tig0015628:69242-69261 | Msa1356460:three_prime_UTR | 55.0% |
| GGGAGCAGCTACACACAGGT+TGG | - | tig0015628:67458-67477 | None:intergenic | 60.0% | |
| CGTACTTGCAGGGTGGACCT+CGG | + | tig0015628:68792-68811 | Msa1356460:intron | 60.0% | |
| GTGGTCGGTCCATGGGTGAT+TGG | + | tig0015628:69033-69052 | Msa1356460:CDS | 60.0% | |
| CCCCTCTTCCCAATCACCCA+TGG | - | tig0015628:69045-69064 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015628 | gene | 65278 | 69621 | 65278 | ID=Msa1356460;Name=Msa1356460 |
| tig0015628 | mRNA | 65278 | 69621 | 65278 | ID=Msa1356460-mRNA-1;Parent=Msa1356460;Name=Msa1356460-mRNA-1;_AED=0.12;_eAED=0.12;_QI=80|1|1|1|1|1|8|515|294 |
| tig0015628 | exon | 65278 | 65632 | 65278 | ID=Msa1356460-mRNA-1:exon:9885;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 65757 | 65844 | 65757 | ID=Msa1356460-mRNA-1:exon:9886;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 65936 | 66021 | 65936 | ID=Msa1356460-mRNA-1:exon:9887;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 66155 | 66233 | 66155 | ID=Msa1356460-mRNA-1:exon:9888;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 66322 | 66381 | 66322 | ID=Msa1356460-mRNA-1:exon:9889;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 67518 | 67639 | 67518 | ID=Msa1356460-mRNA-1:exon:9890;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 68803 | 68874 | 68803 | ID=Msa1356460-mRNA-1:exon:9891;Parent=Msa1356460-mRNA-1 |
| tig0015628 | exon | 69004 | 69621 | 69004 | ID=Msa1356460-mRNA-1:exon:9892;Parent=Msa1356460-mRNA-1 |
| tig0015628 | five_prime_UTR | 65278 | 65357 | 65278 | ID=Msa1356460-mRNA-1:five_prime_utr;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 65358 | 65632 | 65358 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 65757 | 65844 | 65757 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 65936 | 66021 | 65936 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 66155 | 66233 | 66155 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 66322 | 66381 | 66322 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 67518 | 67639 | 67518 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 68803 | 68874 | 68803 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | CDS | 69004 | 69106 | 69004 | ID=Msa1356460-mRNA-1:cds;Parent=Msa1356460-mRNA-1 |
| tig0015628 | three_prime_UTR | 69107 | 69621 | 69107 | ID=Msa1356460-mRNA-1:three_prime_utr;Parent=Msa1356460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
