AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0243160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243160 MtrunA17_Chr2g0321131 83.113 379 52 3 163 530 17 394 0.0 631
Msa0243160 MtrunA17_Chr2g0321131 95.495 111 4 1 28 138 1 110 1.08e-66 221
Msa0243160 MtrunA17_Chr3g0095421 24.930 357 202 17 197 517 33 359 6.10e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243160 AT2G27680.1 77.364 349 67 3 192 529 36 383 0.0 570
Msa0243160 AT2G27680.1 76.923 65 15 0 74 138 36 100 7.27e-28 115
Msa0243160 AT1G06690.1 26.351 296 167 12 206 469 49 325 1.70e-14 75.9
Msa0243160 AT5G53580.1 23.019 265 162 10 229 467 63 311 2.10e-11 66.2

Find 124 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCAATTCTCCAATT+TGG 0.179335 2_2:-20009829 Msa0243160:CDS
CCAAATTGGAGAATTGAAAT+TGG 0.221854 2_2:+20009829 None:intergenic
TCCTTCTACTGAGACAAAAT+TGG 0.233783 2_2:+20005376 None:intergenic
GAAATATGTAGAGTTCTTAA+TGG 0.252504 2_2:-20009571 Msa0243160:CDS
GCAGAGCTTTGTCAGCTTAC+AGG 0.253188 2_2:-20006323 Msa0243160:CDS
CTTGTTGCAATTCCTCTTGT+TGG 0.278987 2_2:+20008059 None:intergenic
TAAAGACAAAAGAAACAAAA+AGG 0.317670 2_2:-20005314 Msa0243160:three_prime_UTR
GTGGATGCTTGGGGAGGATG+GGG 0.330296 2_2:-20005897 Msa0243160:CDS
ATTCTACCCCTCTTGTTGTT+TGG 0.340565 2_2:-20007034 Msa0243160:CDS
ATGGCAGATGGTGGATGCTT+GGG 0.345508 2_2:-20005907 Msa0243160:intron
TATGCGTCCCCAACAGAAAA+TGG 0.349887 2_2:-20006345 Msa0243160:CDS
GCGGATGGGGCAAAATTGAT+AGG 0.358296 2_2:-20007908 Msa0243160:CDS
AAGCTACTTGTCATCTTAAC+TGG 0.362897 2_2:+20007137 None:intergenic
GGTGGATGCTTGGGGAGGAT+GGG 0.363054 2_2:-20005898 Msa0243160:CDS
GTGGCAGACAAGTGGTGGTT+GGG 0.363851 2_2:-20009545 Msa0243160:CDS
GGGCCAGCTGAAGATCTATA+TGG 0.364721 2_2:-20007416 Msa0243160:CDS
AAGAGGATAACGAACCAAAT+TGG 0.367025 2_2:+20009815 None:intergenic
CCTCTTGTTGGTGTTCTGTT+CGG 0.368792 2_2:+20008071 None:intergenic
TGGTGGATGCTTGGGGAGGA+TGG 0.377292 2_2:-20005899 Msa0243160:CDS
AAGAAGATGTAAACAGCATA+AGG 0.390321 2_2:-20005564 Msa0243160:CDS
AAGGATCTTCTTAAAGTGAT+TGG 0.395916 2_2:-20005523 Msa0243160:CDS
CATCCCTCTCAAAATACAAA+AGG 0.396975 2_2:-20006085 Msa0243160:CDS
AGGGATGGAGTATTTATTGC+AGG 0.412390 2_2:+20006101 None:intergenic
CAGTAATGGGAAGGATTCAT+TGG 0.414164 2_2:-20007970 Msa0243160:CDS
CGGCGCATTGTGGTCAGTAA+TGG 0.422536 2_2:-20007984 Msa0243160:CDS
TTTATTGCAGGTCCAGCAAA+AGG 0.427415 2_2:+20006113 None:intergenic
CATGGCAGATGGTGGATGCT+TGG 0.430168 2_2:-20005908 Msa0243160:intron
CAATGCGCCGATTATCCTCC+TGG 0.430412 2_2:+20007997 None:intergenic
GAGAATGGACGTGGAATCCT+TGG 0.433488 2_2:-20007084 Msa0243160:CDS
GGTTCTCTGTGAGTGGGGAT+TGG 0.441664 2_2:+20009705 None:intergenic
GTTGTTGAAGCGAGTGAAAG+TGG 0.443100 2_2:+20009738 None:intergenic
ATGCTCCGGTATGCTGATTC+CGG 0.449274 2_2:-20009490 Msa0243160:CDS
TGACTACCCAGGAGGATAAT+CGG 0.450628 2_2:-20008004 Msa0243160:CDS
AAGAATAATTTGTAATCTCT+CGG 0.452147 2_2:+20006506 None:intergenic
TCGAATCAATCTTGCGCTGT+TGG 0.455461 2_2:+20009684 None:intergenic
GGCGCATTGTGGTCAGTAAT+GGG 0.456036 2_2:-20007983 Msa0243160:CDS
GGAGGATGGGGTTTGTTCCA+AGG 0.459555 2_2:-20005885 Msa0243160:CDS
TGCAGGTATGGGACAGTAAT+GGG 0.460926 2_2:-20006179 Msa0243160:intron
AACCTGCAGCCTGCTGTAGC+AGG 0.462590 2_2:-20005664 Msa0243160:intron
CCTTCTACTGAGACAAAATT+GGG 0.465236 2_2:+20005377 None:intergenic
CGCTGTTGGTTCTCTGTGAG+TGG 0.468927 2_2:+20009698 None:intergenic
TAAGAGTTCGAAGAAGTCCT+TGG 0.474989 2_2:+20005868 None:intergenic
TGGCAAACGAGTGGCGGATG+GGG 0.475308 2_2:-20007921 Msa0243160:CDS
ATGCTTAAATACGCTGATGC+TGG 0.478840 2_2:-20007867 Msa0243160:CDS
TGGATATGCTTCAGTTCCAC+TGG 0.481674 2_2:-20007064 Msa0243160:CDS
AGCGAGTGAAAGTGGAGAAT+AGG 0.486717 2_2:+20009746 None:intergenic
GATATAACTCGGGTTGTGAA+TGG 0.486800 2_2:-20007948 Msa0243160:CDS
TGTGGCAGACAAGTGGTGGT+TGG 0.493594 2_2:-20009546 Msa0243160:CDS
GCTGTTGGTTCTCTGTGAGT+GGG 0.496090 2_2:+20009699 None:intergenic
GTGGCAAACGAGTGGCGGAT+GGG 0.497300 2_2:-20007922 Msa0243160:CDS
TGTGGCAAACGAGTGGCGGA+TGG 0.498373 2_2:-20007923 Msa0243160:CDS
GATTCCCATTGTGAGCAATC+AGG 0.502650 2_2:-20006475 Msa0243160:intron
GAGTAACGGAAACGATTCAT+TGG 0.507063 2_2:-20009593 Msa0243160:CDS
TCTACCTGATTGCTCACAAT+GGG 0.509738 2_2:+20006471 None:intergenic
TGGCAGACAAGTGGTGGTTG+GGG 0.516858 2_2:-20009544 Msa0243160:CDS
ATCCCTCTCAAAATACAAAA+GGG 0.521470 2_2:-20006084 Msa0243160:intron
TATATCAGCCATATCAAAAG+TGG 0.522765 2_2:+20007839 None:intergenic
CTTAAAGTGATTGGTGATTG+TGG 0.523513 2_2:-20005514 Msa0243160:CDS
GGCCAGCTGAAGATCTATAT+GGG 0.529176 2_2:-20007415 Msa0243160:CDS
TAATGTGTCAAGGAAGAGAA+TGG 0.530921 2_2:-20007099 Msa0243160:CDS
TTTGATACAGTCTCACTAAG+TGG 0.532426 2_2:-20007169 Msa0243160:intron
ACCATTGATCCTGCTACAGC+AGG 0.539745 2_2:+20005655 None:intergenic
GGATGTTTATGTTGGTGTCA+AGG 0.543246 2_2:+20006135 None:intergenic
TTGATACAGTCTCACTAAGT+GGG 0.547124 2_2:-20007168 Msa0243160:intron
AGGATTCATTGGATATAACT+CGG 0.549335 2_2:-20007959 Msa0243160:CDS
AGAAGATGTAAACAGCATAA+GGG 0.550057 2_2:-20005563 Msa0243160:CDS
TGGCAGATGGTGGATGCTTG+GGG 0.552987 2_2:-20005906 Msa0243160:intron
AGCAAAAGGGATGTTTATGT+TGG 0.553357 2_2:+20006127 None:intergenic
TCAATGGTTGGTGTAAGACT+TGG 0.555070 2_2:-20005640 Msa0243160:CDS
GCCTGCTGTAGCAGGATCAA+TGG 0.555540 2_2:-20005656 Msa0243160:CDS
CATGTCGAAGGTAGATAAGC+CGG 0.559207 2_2:+20009471 None:intergenic
CGGCTTATCTACCTTCGACA+TGG 0.566100 2_2:-20009470 Msa0243160:CDS
ATCCCATATAGATCTTCAGC+TGG 0.568807 2_2:+20007413 None:intergenic
CTTGTCATCTTAACTGGCGG+TGG 0.574343 2_2:+20007143 None:intergenic
GGATTCATTGGATATAACTC+GGG 0.575840 2_2:-20007958 Msa0243160:CDS
GAGACAACATTAATGTGTCA+AGG 0.581488 2_2:-20007109 Msa0243160:CDS
AAACAAGTATCTACTAAGCA+TGG 0.581998 2_2:-20005846 Msa0243160:CDS
GCTGTAGCAGGATCAATGGT+TGG 0.583139 2_2:-20005652 Msa0243160:CDS
ATGCAGGTATGGGACAGTAA+TGG 0.585251 2_2:-20006180 Msa0243160:intron
AACAGCATAAGGGAAGCAGC+AGG 0.585347 2_2:-20005553 Msa0243160:CDS
AGCATACACCAAACAACAAG+AGG 0.587468 2_2:+20007026 None:intergenic
ATATACTTCACAGCAACAGT+TGG 0.588134 2_2:+20005813 None:intergenic
GTCAAGGAAGAGAATGGACG+TGG 0.589441 2_2:-20007093 Msa0243160:CDS
GGGCAAAATTGATAGGGATG+AGG 0.592842 2_2:-20007901 Msa0243160:CDS
ATACCGGAGCATAGCTTCAA+CGG 0.594485 2_2:+20009501 None:intergenic
ATAAGGGAAGCAGCAGGGAA+AGG 0.597100 2_2:-20005547 Msa0243160:CDS
GTCTACCTGATTGCTCACAA+TGG 0.599622 2_2:+20006470 None:intergenic
TTGATTCGAATTCGATGCAG+TGG 0.601417 2_2:-20009670 Msa0243160:CDS
TGAAAGTGGAGAATAGGTTG+TGG 0.603049 2_2:+20009752 None:intergenic
TTATTGCAGGTCCAGCAAAA+GGG 0.606364 2_2:+20006114 None:intergenic
ATAAGCCGGAATCAGCATAC+CGG 0.610129 2_2:+20009485 None:intergenic
CAGATGGTGGATGCTTGGGG+AGG 0.612252 2_2:-20005903 Msa0243160:CDS
GTAGAGTTCTTAATGGAATG+TGG 0.613884 2_2:-20009564 Msa0243160:CDS
CGGATGGGGCAAAATTGATA+GGG 0.614424 2_2:-20007907 Msa0243160:CDS
GTGATTGTGGAGATGAGTAC+AGG 0.615695 2_2:-20005501 Msa0243160:CDS
CCGAACAGAACACCAACAAG+AGG 0.615915 2_2:-20008071 Msa0243160:CDS
AATGCGCCGATTATCCTCCT+GGG 0.616469 2_2:+20007998 None:intergenic
CATTGTGGTCAGTAATGGGA+AGG 0.617606 2_2:-20007979 Msa0243160:CDS
GTATTTAAGCATAGAGTCAA+CGG 0.619191 2_2:+20007878 None:intergenic
GCATACACCAAACAACAAGA+GGG 0.619495 2_2:+20007027 None:intergenic
TGGGTAGTCACACACTGACA+TGG 0.621295 2_2:+20008017 None:intergenic
ACGCCGTTGAAGCTATGCTC+CGG 0.621896 2_2:-20009504 Msa0243160:CDS
GGAGGATAATCGGCGCATTG+TGG 0.623021 2_2:-20007994 Msa0243160:CDS
GCTTGAAGATACCACTGCCA+TGG 0.626100 2_2:+20009774 None:intergenic
CTGTTGGTTCTCTGTGAGTG+GGG 0.634903 2_2:+20009700 None:intergenic
TCAATCGAGTTCGTCGTGAG+CGG 0.637046 2_2:-20007385 Msa0243160:CDS
GGGTAGAATTTAAATACCAG+TGG 0.638181 2_2:+20007048 None:intergenic
GGAAGCAGCAGGGAAAGGCA+AGG 0.645795 2_2:-20005542 Msa0243160:CDS
GTGGAACTGAAGCATATCCA+AGG 0.649456 2_2:+20007067 None:intergenic
GGCAGACAAGTGGTGGTTGG+GGG 0.649705 2_2:-20009543 Msa0243160:CDS
ACAGCATAAGGGAAGCAGCA+GGG 0.652098 2_2:-20005552 Msa0243160:CDS
CAGCGAGTGAAACTGAGTAA+CGG 0.654769 2_2:-20009607 Msa0243160:CDS
GGAATGTGGCAAACGAGTGG+CGG 0.659714 2_2:-20007927 Msa0243160:CDS
TGTGAAGTATATACTAGACC+AGG 0.663396 2_2:-20005802 Msa0243160:intron
ATGTCAGTGTGTGACTACCC+AGG 0.665991 2_2:-20008015 Msa0243160:CDS
CTACTTGTCATCTTAACTGG+CGG 0.666369 2_2:+20007140 None:intergenic
ACAGTGATCAGCCATGTCGA+AGG 0.668855 2_2:+20009459 None:intergenic
CTCGGGTTGTGAATGGAATG+TGG 0.682270 2_2:-20007941 Msa0243160:CDS
GGAATGTGGCAGACAAGTGG+TGG 0.686815 2_2:-20009550 Msa0243160:CDS
AATGGAATGTGGCAAACGAG+TGG 0.701010 2_2:-20007930 Msa0243160:CDS
AATGGAATGTGGCAGACAAG+TGG 0.706632 2_2:-20009553 Msa0243160:CDS
CATACACCAAACAACAAGAG+GGG 0.726941 2_2:+20007028 None:intergenic
AGGTATGGGACAGTAATGGG+TGG 0.729235 2_2:-20006176 Msa0243160:CDS
TCAGTGTGTGACTACCCAGG+AGG 0.784654 2_2:-20008012 Msa0243160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTTAAAGAATAAAATA+TGG + chr2_2:20006585-20006604 None:intergenic 10.0%
!!! TATATTTCATTTTTTTTTTG+AGG - chr2_2:20006768-20006787 Msa0243160:intron 10.0%
!! TCATATATATTTCATATTTA+TGG - chr2_2:20006796-20006815 Msa0243160:intron 10.0%
!!! ATGAAATTATTTTTTAAATG+GGG + chr2_2:20008813-20008832 None:intergenic 10.0%
!!! GATGAAATTATTTTTTAAAT+GGG + chr2_2:20008814-20008833 None:intergenic 10.0%
!!! TGATGAAATTATTTTTTAAA+TGG + chr2_2:20008815-20008834 None:intergenic 10.0%
!!! AGTCAAATTCTTAAATTTTA+TGG - chr2_2:20006414-20006433 Msa0243160:intron 15.0%
!!! AGCAATTTGATTTTTATTTT+TGG - chr2_2:20006714-20006733 Msa0243160:intron 15.0%
!!! AACAAAGACAATTTTTTTAT+GGG + chr2_2:20007339-20007358 None:intergenic 15.0%
!!! AAACAAAGACAATTTTTTTA+TGG + chr2_2:20007340-20007359 None:intergenic 15.0%
!!! TGAAATTATTTTTTAAATGG+GGG + chr2_2:20008812-20008831 None:intergenic 15.0%
!! ATCTCATATTGATATTAAAT+TGG - chr2_2:20009360-20009379 Msa0243160:intron 15.0%
!!! TTTTTGCTTATAAATATGAC+TGG + chr2_2:20005801-20005820 None:intergenic 20.0%
!!! ACTTTTTTAGATACATTGAA+TGG + chr2_2:20005889-20005908 None:intergenic 20.0%
!!! AAACTTTTTTGTTTTTTGAG+AGG - chr2_2:20006163-20006182 Msa0243160:CDS 20.0%
!!! AACAATTGAATCCTAAATTT+TGG + chr2_2:20006198-20006217 None:intergenic 20.0%
!! ACTTATAAAACCAACATATA+GGG + chr2_2:20006229-20006248 None:intergenic 20.0%
!! AACTTATAAAACCAACATAT+AGG + chr2_2:20006230-20006249 None:intergenic 20.0%
!!! TGAATTTTGTTAAACTGTTT+GGG + chr2_2:20006325-20006344 None:intergenic 20.0%
!! TTAGCAAAACTAATTCAAAA+TGG + chr2_2:20006546-20006565 None:intergenic 20.0%
!!! ATTTTGAATTAGTTTTGCTA+AGG - chr2_2:20006545-20006564 Msa0243160:CDS 20.0%
!! ATGAAAAAATCAAAACAGAA+CGG + chr2_2:20006677-20006696 None:intergenic 20.0%
!! ATATTTATGGAAAATAAGAG+TGG - chr2_2:20006809-20006828 Msa0243160:intron 20.0%
!! AATGGATATCATTAACTAAA+TGG + chr2_2:20007477-20007496 None:intergenic 20.0%
!! ATTTAGTTAATGATATCCAT+TGG - chr2_2:20007476-20007495 Msa0243160:intron 20.0%
!!! TTTTAGTCTGCATAATAAAA+AGG - chr2_2:20007594-20007613 Msa0243160:intron 20.0%
!! ACAATCAAGAATTGTATTAT+CGG + chr2_2:20007849-20007868 None:intergenic 20.0%
!! ATTTATTTCAGTAACATACT+AGG + chr2_2:20008135-20008154 None:intergenic 20.0%
!!! TATGTAGTTGATTTACTTAT+TGG - chr2_2:20008172-20008191 Msa0243160:intron 20.0%
!!! AAGAATAATTTGTAATCTCT+CGG + chr2_2:20008585-20008604 None:intergenic 20.0%
!! ATTTCACTTTAATCTCATTT+CGG + chr2_2:20008850-20008869 None:intergenic 20.0%
!! TAACTTCAGAAAATTAATGA+TGG + chr2_2:20009043-20009062 None:intergenic 20.0%
!!! TATTTGTTTGATTTTGGTTA+TGG - chr2_2:20009398-20009417 Msa0243160:intron 20.0%
!! AAGATGAAAACATAAAAAGA+AGG - chr2_2:20009675-20009694 Msa0243160:CDS 20.0%
!! AGATGAAAACATAAAAAGAA+GGG - chr2_2:20009676-20009695 Msa0243160:CDS 20.0%
!!! TGTTTCTTTTGTCTTTAAAT+CGG + chr2_2:20009771-20009790 None:intergenic 20.0%
!! TAAAGACAAAAGAAACAAAA+AGG - chr2_2:20009774-20009793 Msa0243160:CDS 20.0%
!!! GAAATTGGAAATGTTTTAGT+TGG + chr2_2:20005247-20005266 None:intergenic 25.0%
! GAAATATGTAGAGTTCTTAA+TGG - chr2_2:20005517-20005536 Msa0243160:CDS 25.0%
! TCATCAAAGAGAAAAATCTA+AGG + chr2_2:20005731-20005750 None:intergenic 25.0%
! ACTATTCAATGTATCTACAA+AGG + chr2_2:20005828-20005847 None:intergenic 25.0%
! ATGTATACAGTCACATTTAT+AGG + chr2_2:20005863-20005882 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr2_2:20005911-20005930 Msa0243160:intron 25.0%
! TGATGACTGAAAATTCAATT+TGG - chr2_2:20005945-20005964 Msa0243160:intron 25.0%
!!! GGATTTTTTGTCCAAAATTT+AGG - chr2_2:20006184-20006203 Msa0243160:intron 25.0%
!! TTTTTGTATACCCTATATGT+TGG - chr2_2:20006216-20006235 Msa0243160:intron 25.0%
!! CTGAATTTTGTTAAACTGTT+TGG + chr2_2:20006326-20006345 None:intergenic 25.0%
! CAAACAGTTTAACAAAATTC+AGG - chr2_2:20006324-20006343 Msa0243160:CDS 25.0%
!!! CTTTAAAGTAAAGAGTCTAA+TGG + chr2_2:20006393-20006412 None:intergenic 25.0%
! ATTTGACAGCAAATATTATG+TGG - chr2_2:20006640-20006659 Msa0243160:intron 25.0%
! CCATATATTTATACTTTACG+TGG + chr2_2:20006837-20006856 None:intergenic 25.0%
! CCACGTAAAGTATAAATATA+TGG - chr2_2:20006834-20006853 Msa0243160:intron 25.0%
! CGTAAAGTATAAATATATGG+TGG - chr2_2:20006837-20006856 Msa0243160:intron 25.0%
!!! AAGACAATTTTTTTATGGGA+AGG + chr2_2:20007335-20007354 None:intergenic 25.0%
!!! ACATCTTTTTCAAGTAGAAA+AGG + chr2_2:20007792-20007811 None:intergenic 25.0%
! AAATTACCATAGAACATAGA+AGG - chr2_2:20007874-20007893 Msa0243160:CDS 25.0%
! GACTGTATCAAATAATACAA+TGG + chr2_2:20007911-20007930 None:intergenic 25.0%
! TTTCACAATTCTTCATAACA+TGG - chr2_2:20008090-20008109 Msa0243160:CDS 25.0%
!!! CCTAAATTTGTTACAGATAA+AGG + chr2_2:20008243-20008262 None:intergenic 25.0%
! CCTTTATCTGTAACAAATTT+AGG - chr2_2:20008240-20008259 Msa0243160:intron 25.0%
! TTATCTGTAACAAATTTAGG+TGG - chr2_2:20008243-20008262 Msa0243160:intron 25.0%
! TATCTGTAACAAATTTAGGT+GGG - chr2_2:20008244-20008263 Msa0243160:intron 25.0%
! GTTTGCTTAAATCAAGAAAT+GGG + chr2_2:20008504-20008523 None:intergenic 25.0%
!! AGTTTGCTTAAATCAAGAAA+TGG + chr2_2:20008505-20008524 None:intergenic 25.0%
! AGTTTATTTAAACTTACTGC+TGG - chr2_2:20008667-20008686 Msa0243160:intron 25.0%
! AATCAAACAAATATCCAACA+GGG + chr2_2:20009391-20009410 None:intergenic 25.0%
! AAATCAAACAAATATCCAAC+AGG + chr2_2:20009392-20009411 None:intergenic 25.0%
!!! GTTGGATATTTGTTTGATTT+TGG - chr2_2:20009392-20009411 Msa0243160:intron 25.0%
CCAAATTGGAGAATTGAAAT+TGG + chr2_2:20005262-20005281 None:intergenic 30.0%
CCAATTTCAATTCTCCAATT+TGG - chr2_2:20005259-20005278 Msa0243160:three_prime_UTR 30.0%
!! TTTTTGAGAAGAAGAAGAAG+AGG + chr2_2:20005293-20005312 None:intergenic 30.0%
TTCTTCTTCTCAAAAATCCA+TGG - chr2_2:20005297-20005316 Msa0243160:three_prime_UTR 30.0%
ATGAATACAGAGAAAATGAG+TGG + chr2_2:20005667-20005686 None:intergenic 30.0%
TGCTTATAAATATGACTGGA+GGG + chr2_2:20005797-20005816 None:intergenic 30.0%
TTGCTTATAAATATGACTGG+AGG + chr2_2:20005798-20005817 None:intergenic 30.0%
AATTTGGTCGTCACAAAAAT+GGG - chr2_2:20005961-20005980 Msa0243160:intron 30.0%
GGAAAAATAAATTCGCTAGA+AGG - chr2_2:20005988-20006007 Msa0243160:intron 30.0%
AAAATAAATTCGCTAGAAGG+AGG - chr2_2:20005991-20006010 Msa0243160:intron 30.0%
AAATAAATTCGCTAGAAGGA+GGG - chr2_2:20005992-20006011 Msa0243160:intron 30.0%
ATAACTAAAATCAGAGCAGT+TGG + chr2_2:20006126-20006145 None:intergenic 30.0%
AGGATTCATTGGATATAACT+CGG - chr2_2:20007129-20007148 Msa0243160:CDS 30.0%
GTATTTAAGCATAGAGTCAA+CGG + chr2_2:20007213-20007232 None:intergenic 30.0%
!! TGGATTAACCACTTTTGATA+TGG - chr2_2:20007241-20007260 Msa0243160:intron 30.0%
TATATCAGCCATATCAAAAG+TGG + chr2_2:20007252-20007271 None:intergenic 30.0%
TAGTTAATGATATCCATTGG+AGG - chr2_2:20007479-20007498 Msa0243160:intron 30.0%
!!! TCTCATTTGTTGTGTTCTTT+TGG - chr2_2:20007639-20007658 Msa0243160:intron 30.0%
!! AATTTTTGGAAAAGGTCAGA+GGG - chr2_2:20007733-20007752 Msa0243160:intron 30.0%
! TATTTCTGTTAACCTTGTAC+AGG - chr2_2:20008524-20008543 Msa0243160:intron 30.0%
!!! GTTTTGATTTTACCTGTACA+AGG + chr2_2:20008539-20008558 None:intergenic 30.0%
! GAAGAGAAATTAAAGCACTT+GGG + chr2_2:20008643-20008662 None:intergenic 30.0%
! AGAAGAGAAATTAAAGCACT+TGG + chr2_2:20008644-20008663 None:intergenic 30.0%
! TATAAAGTATCTTCACTGTC+AGG - chr2_2:20008701-20008720 Msa0243160:intron 30.0%
ATCCCTCTCAAAATACAAAA+GGG - chr2_2:20009004-20009023 Msa0243160:intron 30.0%
!! TACCCTTTTGTATTTTGAGA+GGG + chr2_2:20009009-20009028 None:intergenic 30.0%
!! TTACCCTTTTGTATTTTGAG+AGG + chr2_2:20009010-20009029 None:intergenic 30.0%
AAACAAGTATCTACTAAGCA+TGG - chr2_2:20009242-20009261 Msa0243160:intron 30.0%
AAGAAGATGTAAACAGCATA+AGG - chr2_2:20009524-20009543 Msa0243160:CDS 30.0%
AGAAGATGTAAACAGCATAA+GGG - chr2_2:20009525-20009544 Msa0243160:CDS 30.0%
AAGGATCTTCTTAAAGTGAT+TGG - chr2_2:20009565-20009584 Msa0243160:CDS 30.0%
! GTGATTGTTTTCACTTATAC+AGG - chr2_2:20009645-20009664 Msa0243160:CDS 30.0%
! TTTTCACTTATACAGGACAA+GGG - chr2_2:20009652-20009671 Msa0243160:CDS 30.0%
AAGAGGATAACGAACCAAAT+TGG + chr2_2:20005276-20005295 None:intergenic 35.0%
GTAGAGTTCTTAATGGAATG+TGG - chr2_2:20005524-20005543 Msa0243160:CDS 35.0%
!!! GATTTTTCTCTTTGATGACG+TGG - chr2_2:20005733-20005752 Msa0243160:intron 35.0%
CAATTTGGTCGTCACAAAAA+TGG - chr2_2:20005960-20005979 Msa0243160:intron 35.0%
ATTTGGTCGTCACAAAAATG+GGG - chr2_2:20005962-20005981 Msa0243160:intron 35.0%
AATAAATTCGCTAGAAGGAG+GGG - chr2_2:20005993-20006012 Msa0243160:intron 35.0%
CAACTTGAGAAGTTGCATAA+AGG - chr2_2:20006883-20006902 Msa0243160:intron 35.0%
GGATTCATTGGATATAACTC+GGG - chr2_2:20007130-20007149 Msa0243160:CDS 35.0%
!! TTTATGGGAAGGTGTTTACA+TGG + chr2_2:20007324-20007343 None:intergenic 35.0%
TGACACGAATCTAGTACTTT+AGG - chr2_2:20007391-20007410 Msa0243160:CDS 35.0%
ACGAATCTAGTACTTTAGGT+CGG - chr2_2:20007395-20007414 Msa0243160:CDS 35.0%
!!! AGGTTTTGTCGAGTTGATTT+AGG - chr2_2:20007425-20007444 Msa0243160:intron 35.0%
!!! GGCAGTCAAGTTTTAGAATT+TGG + chr2_2:20007456-20007475 None:intergenic 35.0%
AACATCCTGCATACTCAAAT+GGG + chr2_2:20007539-20007558 None:intergenic 35.0%
TAACATCCTGCATACTCAAA+TGG + chr2_2:20007540-20007559 None:intergenic 35.0%
TATGCAGGATGTTATAGATG+TGG - chr2_2:20007546-20007565 Msa0243160:intron 35.0%
! ACCTTTTCCAAAAATTCTGG+TGG + chr2_2:20007729-20007748 None:intergenic 35.0%
! CTGACCTTTTCCAAAAATTC+TGG + chr2_2:20007732-20007751 None:intergenic 35.0%
!! GAATTTTTGGAAAAGGTCAG+AGG - chr2_2:20007732-20007751 Msa0243160:intron 35.0%
! AGAGTACCTTCTATGTTCTA+TGG + chr2_2:20007883-20007902 None:intergenic 35.0%
TTTGATACAGTCTCACTAAG+TGG - chr2_2:20007919-20007938 Msa0243160:CDS 35.0%
TTGATACAGTCTCACTAAGT+GGG - chr2_2:20007920-20007939 Msa0243160:CDS 35.0%
AAGCTACTTGTCATCTTAAC+TGG + chr2_2:20007954-20007973 None:intergenic 35.0%
GAGACAACATTAATGTGTCA+AGG - chr2_2:20007979-20007998 Msa0243160:CDS 35.0%
TAATGTGTCAAGGAAGAGAA+TGG - chr2_2:20007989-20008008 Msa0243160:CDS 35.0%
GGGTAGAATTTAAATACCAG+TGG + chr2_2:20008043-20008062 None:intergenic 35.0%
AGGTGGGATTATTCAAATTC+AGG - chr2_2:20008260-20008279 Msa0243160:intron 35.0%
TTCCTGATTAAGCATGTGTT+TGG - chr2_2:20008337-20008356 Msa0243160:intron 35.0%
TTCCAAACACATGCTTAATC+AGG + chr2_2:20008342-20008361 None:intergenic 35.0%
! TAAGCATGTGTTTGGAATAC+CGG - chr2_2:20008345-20008364 Msa0243160:intron 35.0%
! AAGCCACAAAAACCATGTTT+TGG - chr2_2:20008372-20008391 Msa0243160:intron 35.0%
! TTGCCAAAACATGGTTTTTG+TGG + chr2_2:20008378-20008397 None:intergenic 35.0%
TTTCCAGCTTCACAAAATCA+CGG - chr2_2:20008407-20008426 Msa0243160:intron 35.0%
AATCACGGTGAAAATGACAT+TGG - chr2_2:20008422-20008441 Msa0243160:intron 35.0%
ATCACGGTGAAAATGACATT+GGG - chr2_2:20008423-20008442 Msa0243160:intron 35.0%
CAGATGAGTTATAGTGTGTT+TGG + chr2_2:20008477-20008496 None:intergenic 35.0%
AGCAAAAGGGATGTTTATGT+TGG + chr2_2:20008964-20008983 None:intergenic 35.0%
! AACATAAACATCCCTTTTGC+TGG - chr2_2:20008963-20008982 Msa0243160:intron 35.0%
!! CTTTTGTATTTTGAGAGGGA+TGG + chr2_2:20009005-20009024 None:intergenic 35.0%
CATCCCTCTCAAAATACAAA+AGG - chr2_2:20009003-20009022 Msa0243160:intron 35.0%
ATATACTTCACAGCAACAGT+TGG + chr2_2:20009278-20009297 None:intergenic 35.0%
TGTGAAGTATATACTAGACC+AGG - chr2_2:20009286-20009305 Msa0243160:intron 35.0%
!! AGTTGATTTGCTTTCAATGC+AGG - chr2_2:20009312-20009331 Msa0243160:intron 35.0%
! CTTAAAGTGATTGGTGATTG+TGG - chr2_2:20009574-20009593 Msa0243160:CDS 35.0%
! GTTTTCACTTATACAGGACA+AGG - chr2_2:20009651-20009670 Msa0243160:CDS 35.0%
CCTTCTACTGAGACAAAATT+GGG + chr2_2:20009714-20009733 None:intergenic 35.0%
TCCTTCTACTGAGACAAAAT+TGG + chr2_2:20009715-20009734 None:intergenic 35.0%
TTCTCAAAAATCCATGGCAG+TGG - chr2_2:20005303-20005322 Msa0243160:three_prime_UTR 40.0%
TGAAAGTGGAGAATAGGTTG+TGG + chr2_2:20005339-20005358 None:intergenic 40.0%
! TTGATTCGAATTCGATGCAG+TGG - chr2_2:20005418-20005437 Msa0243160:three_prime_UTR 40.0%
! GAGTAACGGAAACGATTCAT+TGG - chr2_2:20005495-20005514 Msa0243160:CDS 40.0%
! ACAGAGAAAATGAGTGGACT+AGG + chr2_2:20005661-20005680 None:intergenic 40.0%
! CATTCTGTTCTATGATGACG+TGG - chr2_2:20005694-20005713 Msa0243160:intron 40.0%
!!! TTTTCTCTTTGATGACGTGG+AGG - chr2_2:20005736-20005755 Msa0243160:intron 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr2_2:20005914-20005933 Msa0243160:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr2_2:20005915-20005934 Msa0243160:intron 40.0%
CCAAACTAAAGTGTACAAGC+TGG + chr2_2:20006073-20006092 None:intergenic 40.0%
CCAGCTTGTACACTTTAGTT+TGG - chr2_2:20006070-20006089 Msa0243160:intron 40.0%
ATCATGCGAACAAAACTCCA+GGG + chr2_2:20006454-20006473 None:intergenic 40.0%
CAACAGCAGAAACTCTTGAA+AGG + chr2_2:20006914-20006933 None:intergenic 40.0%
CTTGTTGCAATTCCTCTTGT+TGG + chr2_2:20007032-20007051 None:intergenic 40.0%
! CAGTAATGGGAAGGATTCAT+TGG - chr2_2:20007118-20007137 Msa0243160:CDS 40.0%
! GATATAACTCGGGTTGTGAA+TGG - chr2_2:20007140-20007159 Msa0243160:CDS 40.0%
ATGCTTAAATACGCTGATGC+TGG - chr2_2:20007221-20007240 Msa0243160:intron 40.0%
! TACTTTAGGTCGGCTTTATG+AGG - chr2_2:20007405-20007424 Msa0243160:CDS 40.0%
TCTACACTCTAATCCTCCAA+TGG + chr2_2:20007495-20007514 None:intergenic 40.0%
!!! TGTTCTTTTGGCTTTGCAGA+TGG - chr2_2:20007651-20007670 Msa0243160:intron 40.0%
!!! GTTCTTTTGGCTTTGCAGAT+GGG - chr2_2:20007652-20007671 Msa0243160:intron 40.0%
ATCCCATATAGATCTTCAGC+TGG + chr2_2:20007678-20007697 None:intergenic 40.0%
!! GCCACCAGAATTTTTGGAAA+AGG - chr2_2:20007725-20007744 Msa0243160:intron 40.0%
CTACTTGTCATCTTAACTGG+CGG + chr2_2:20007951-20007970 None:intergenic 40.0%
!! ATTCTACCCCTCTTGTTGTT+TGG - chr2_2:20008054-20008073 Msa0243160:CDS 40.0%
CATACACCAAACAACAAGAG+GGG + chr2_2:20008063-20008082 None:intergenic 40.0%
GCATACACCAAACAACAAGA+GGG + chr2_2:20008064-20008083 None:intergenic 40.0%
AGCATACACCAAACAACAAG+AGG + chr2_2:20008065-20008084 None:intergenic 40.0%
!!! TGAGGTGTTTTAGTGCATCA+AGG + chr2_2:20008289-20008308 None:intergenic 40.0%
AAACACCTCACAGACTTGAA+AGG - chr2_2:20008299-20008318 Msa0243160:intron 40.0%
!!! AACCATGTTTTGGCAAAAGC+TGG - chr2_2:20008382-20008401 Msa0243160:intron 40.0%
! TTCCAGCTTTTGCCAAAACA+TGG + chr2_2:20008387-20008406 None:intergenic 40.0%
TCTACCTGATTGCTCACAAT+GGG + chr2_2:20008620-20008639 None:intergenic 40.0%
!!! AAGCTCTGCCATTTTCTGTT+GGG + chr2_2:20008754-20008773 None:intergenic 40.0%
!!! AAAGCTCTGCCATTTTCTGT+TGG + chr2_2:20008755-20008774 None:intergenic 40.0%
ATACCTGCATCACAATTTGG+GGG + chr2_2:20008898-20008917 None:intergenic 40.0%
CATACCTGCATCACAATTTG+GGG + chr2_2:20008899-20008918 None:intergenic 40.0%
CCATACCTGCATCACAATTT+GGG + chr2_2:20008900-20008919 None:intergenic 40.0%
CCAAATTGTGATGCAGGTAT+GGG - chr2_2:20008898-20008917 Msa0243160:intron 40.0%
!! GGATGTTTATGTTGGTGTCA+AGG + chr2_2:20008956-20008975 None:intergenic 40.0%
TTATTGCAGGTCCAGCAAAA+GGG + chr2_2:20008977-20008996 None:intergenic 40.0%
TTTATTGCAGGTCCAGCAAA+AGG + chr2_2:20008978-20008997 None:intergenic 40.0%
! AGGGATGGAGTATTTATTGC+AGG + chr2_2:20008990-20009009 None:intergenic 40.0%
TAGTGTTCTTAAGCGGGTAA+AGG + chr2_2:20009086-20009105 None:intergenic 40.0%
TTTACCCGCTTAAGAACACT+AGG - chr2_2:20009085-20009104 Msa0243160:intron 40.0%
ATCCTCCTAGTGTTCTTAAG+CGG + chr2_2:20009093-20009112 None:intergenic 40.0%
TAAGAGTTCGAAGAAGTCCT+TGG + chr2_2:20009223-20009242 None:intergenic 40.0%
GAAAGCAAATCAACTTCACC+TGG + chr2_2:20009307-20009326 None:intergenic 40.0%
TTAAATTGGACAAGCCCTGT+TGG - chr2_2:20009374-20009393 Msa0243160:intron 40.0%
! TCAATGGTTGGTGTAAGACT+TGG - chr2_2:20009448-20009467 Msa0243160:intron 40.0%
! CCCAATTTTGTCTCAGTAGA+AGG - chr2_2:20009711-20009730 Msa0243160:CDS 40.0%
AGCGAGTGAAAGTGGAGAAT+AGG + chr2_2:20005345-20005364 None:intergenic 45.0%
GTTGTTGAAGCGAGTGAAAG+TGG + chr2_2:20005353-20005372 None:intergenic 45.0%
TCGAATCAATCTTGCGCTGT+TGG + chr2_2:20005407-20005426 None:intergenic 45.0%
CAGCGAGTGAAACTGAGTAA+CGG - chr2_2:20005481-20005500 Msa0243160:exon 45.0%
AATGGAATGTGGCAGACAAG+TGG - chr2_2:20005535-20005554 Msa0243160:CDS 45.0%
ATACCGGAGCATAGCTTCAA+CGG + chr2_2:20005590-20005609 None:intergenic 45.0%
ATAAGCCGGAATCAGCATAC+CGG + chr2_2:20005606-20005625 None:intergenic 45.0%
CATGTCGAAGGTAGATAAGC+CGG + chr2_2:20005620-20005639 None:intergenic 45.0%
! TCTGTTCTATGATGACGTGG+AGG - chr2_2:20005697-20005716 Msa0243160:intron 45.0%
AGTCATCAATCTACTCCCTC+CGG + chr2_2:20005933-20005952 None:intergenic 45.0%
GTCGTCACAAAAATGGGGAA+TGG - chr2_2:20005967-20005986 Msa0243160:intron 45.0%
ACAAGCTGGAATAGCTCAGT+TGG + chr2_2:20006059-20006078 None:intergenic 45.0%
GATCATGCGAACAAAACTCC+AGG + chr2_2:20006455-20006474 None:intergenic 45.0%
! CCTCTTGTTGGTGTTCTGTT+CGG + chr2_2:20007020-20007039 None:intergenic 45.0%
TGACTACCCAGGAGGATAAT+CGG - chr2_2:20007084-20007103 Msa0243160:CDS 45.0%
! CATTGTGGTCAGTAATGGGA+AGG - chr2_2:20007109-20007128 Msa0243160:CDS 45.0%
AATGGAATGTGGCAAACGAG+TGG - chr2_2:20007158-20007177 Msa0243160:CDS 45.0%
CGGATGGGGCAAAATTGATA+GGG - chr2_2:20007181-20007200 Msa0243160:intron 45.0%
GGGCAAAATTGATAGGGATG+AGG - chr2_2:20007187-20007206 Msa0243160:intron 45.0%
TCAAATGGGACCAGTCTCTT+GGG + chr2_2:20007525-20007544 None:intergenic 45.0%
GGCCAGCTGAAGATCTATAT+GGG - chr2_2:20007673-20007692 Msa0243160:intron 45.0%
GTGGAACTGAAGCATATCCA+AGG + chr2_2:20008024-20008043 None:intergenic 45.0%
TGGATATGCTTCAGTTCCAC+TGG - chr2_2:20008024-20008043 Msa0243160:CDS 45.0%
! CTTCTCCTTTCAAGTCTGTG+AGG + chr2_2:20008307-20008326 None:intergenic 45.0%
CTCACAGACTTGAAAGGAGA+AGG - chr2_2:20008305-20008324 Msa0243160:intron 45.0%
! TGGTTTTTGTGGCTTTCCAC+CGG + chr2_2:20008367-20008386 None:intergenic 45.0%
! TCACCGTGATTTTGTGAAGC+TGG + chr2_2:20008413-20008432 None:intergenic 45.0%
GATTCCCATTGTGAGCAATC+AGG - chr2_2:20008613-20008632 Msa0243160:intron 45.0%
GTCTACCTGATTGCTCACAA+TGG + chr2_2:20008621-20008640 None:intergenic 45.0%
TATGCGTCCCCAACAGAAAA+TGG - chr2_2:20008743-20008762 Msa0243160:intron 45.0%
!!! AGCTCTGCCATTTTCTGTTG+GGG + chr2_2:20008753-20008772 None:intergenic 45.0%
TTTCCCCCAAATTGTGATGC+AGG - chr2_2:20008892-20008911 Msa0243160:intron 45.0%
CCCAAATTGTGATGCAGGTA+TGG - chr2_2:20008897-20008916 Msa0243160:intron 45.0%
CCCATACCTGCATCACAATT+TGG + chr2_2:20008901-20008920 None:intergenic 45.0%
ATGCAGGTATGGGACAGTAA+TGG - chr2_2:20008908-20008927 Msa0243160:intron 45.0%
TGCAGGTATGGGACAGTAAT+GGG - chr2_2:20008909-20008928 Msa0243160:intron 45.0%
TCCTCCTAGTGTTCTTAAGC+GGG + chr2_2:20009092-20009111 None:intergenic 45.0%
TTGCTGTACTTCGCATCACA+TGG - chr2_2:20009162-20009181 Msa0243160:intron 45.0%
GTGATTGTGGAGATGAGTAC+AGG - chr2_2:20009587-20009606 Msa0243160:CDS 45.0%
!! ATAACATAAAATTAAATAAT+TGG + chr2_2:20006477-20006496 None:intergenic 5.0%
!!! AAAAAAATAACATTTTTTTA+GGG + chr2_2:20006513-20006532 None:intergenic 5.0%
!!! TAAAAAAATAACATTTTTTT+AGG + chr2_2:20006514-20006533 None:intergenic 5.0%
GCTTGAAGATACCACTGCCA+TGG + chr2_2:20005317-20005336 None:intergenic 50.0%
!! CTGTTGGTTCTCTGTGAGTG+GGG + chr2_2:20005391-20005410 None:intergenic 50.0%
!! GCTGTTGGTTCTCTGTGAGT+GGG + chr2_2:20005392-20005411 None:intergenic 50.0%
!! ATGCTCCGGTATGCTGATTC+CGG - chr2_2:20005598-20005617 Msa0243160:CDS 50.0%
CGGCTTATCTACCTTCGACA+TGG - chr2_2:20005618-20005637 Msa0243160:CDS 50.0%
ACAGTGATCAGCCATGTCGA+AGG + chr2_2:20005632-20005651 None:intergenic 50.0%
GTGGCTGTTAACCACAAGGT+CGG + chr2_2:20006027-20006046 None:intergenic 50.0%
! TCAAGTTGCCCTATCCTGTG+CGG + chr2_2:20006871-20006890 None:intergenic 50.0%
CCGAACAGAACACCAACAAG+AGG - chr2_2:20007017-20007036 Msa0243160:intron 50.0%
TGGGTAGTCACACACTGACA+TGG + chr2_2:20007074-20007093 None:intergenic 50.0%
ATGTCAGTGTGTGACTACCC+AGG - chr2_2:20007073-20007092 Msa0243160:CDS 50.0%
!! AATGCGCCGATTATCCTCCT+GGG + chr2_2:20007093-20007112 None:intergenic 50.0%
GGCGCATTGTGGTCAGTAAT+GGG - chr2_2:20007105-20007124 Msa0243160:CDS 50.0%
! CTCGGGTTGTGAATGGAATG+TGG - chr2_2:20007147-20007166 Msa0243160:CDS 50.0%
GCGGATGGGGCAAAATTGAT+AGG - chr2_2:20007180-20007199 Msa0243160:intron 50.0%
AGAGACAGTTCCCAAGAGAC+TGG - chr2_2:20007512-20007531 Msa0243160:intron 50.0%
CTCAAATGGGACCAGTCTCT+TGG + chr2_2:20007526-20007545 None:intergenic 50.0%
CTGGTCCCATTTGAGTATGC+AGG - chr2_2:20007531-20007550 Msa0243160:intron 50.0%
GGGCCAGCTGAAGATCTATA+TGG - chr2_2:20007672-20007691 Msa0243160:intron 50.0%
TCAATCGAGTTCGTCGTGAG+CGG - chr2_2:20007703-20007722 Msa0243160:intron 50.0%
! TGAGCGGCCACCAGAATTTT+TGG - chr2_2:20007719-20007738 Msa0243160:intron 50.0%
CTTGTCATCTTAACTGGCGG+TGG + chr2_2:20007948-20007967 None:intergenic 50.0%
GTCAAGGAAGAGAATGGACG+TGG - chr2_2:20007995-20008014 Msa0243160:CDS 50.0%
GAGAATGGACGTGGAATCCT+TGG - chr2_2:20008004-20008023 Msa0243160:CDS 50.0%
! GCATGTGTTTGGAATACCGG+TGG - chr2_2:20008348-20008367 Msa0243160:intron 50.0%
! GCAGAGCTTTGTCAGCTTAC+AGG - chr2_2:20008765-20008784 Msa0243160:intron 50.0%
! AGGTATGGGACAGTAATGGG+TGG - chr2_2:20008912-20008931 Msa0243160:intron 50.0%
ACCCGCTTAAGAACACTAGG+AGG - chr2_2:20009088-20009107 Msa0243160:intron 50.0%
ACTTCGCATCACATGGCAGA+TGG - chr2_2:20009169-20009188 Msa0243160:intron 50.0%
!! ATGGCAGATGGTGGATGCTT+GGG - chr2_2:20009181-20009200 Msa0243160:intron 50.0%
ACCATTGATCCTGCTACAGC+AGG + chr2_2:20009436-20009455 None:intergenic 50.0%
GCTGTAGCAGGATCAATGGT+TGG - chr2_2:20009436-20009455 Msa0243160:intron 50.0%
AACAGCATAAGGGAAGCAGC+AGG - chr2_2:20009535-20009554 Msa0243160:CDS 50.0%
ACAGCATAAGGGAAGCAGCA+GGG - chr2_2:20009536-20009555 Msa0243160:CDS 50.0%
ATAAGGGAAGCAGCAGGGAA+AGG - chr2_2:20009541-20009560 Msa0243160:CDS 50.0%
GGTTCTCTGTGAGTGGGGAT+TGG + chr2_2:20005386-20005405 None:intergenic 55.0%
!! CGCTGTTGGTTCTCTGTGAG+TGG + chr2_2:20005393-20005412 None:intergenic 55.0%
GGAATGTGGCAGACAAGTGG+TGG - chr2_2:20005538-20005557 Msa0243160:CDS 55.0%
TGTGGCAGACAAGTGGTGGT+TGG - chr2_2:20005542-20005561 Msa0243160:CDS 55.0%
GTGGCAGACAAGTGGTGGTT+GGG - chr2_2:20005543-20005562 Msa0243160:CDS 55.0%
TGGCAGACAAGTGGTGGTTG+GGG - chr2_2:20005544-20005563 Msa0243160:CDS 55.0%
ACGCCGTTGAAGCTATGCTC+CGG - chr2_2:20005584-20005603 Msa0243160:CDS 55.0%
GCTGTTAACCACAAGGTCGG+AGG + chr2_2:20006024-20006043 None:intergenic 55.0%
GCGTGTGGCTGTTAACCACA+AGG + chr2_2:20006031-20006050 None:intergenic 55.0%
GCTCAGTTGGTTAGAGCGTG+TGG + chr2_2:20006046-20006065 None:intergenic 55.0%
TGGTGAGCACTTCTGTACCC+TGG - chr2_2:20006434-20006453 Msa0243160:intron 55.0%
AGAGTAGCCCGCACAGGATA+GGG - chr2_2:20006860-20006879 Msa0243160:intron 55.0%
CAAGTTGCCCTATCCTGTGC+GGG + chr2_2:20006870-20006889 None:intergenic 55.0%
TCAGTGTGTGACTACCCAGG+AGG - chr2_2:20007076-20007095 Msa0243160:CDS 55.0%
!! CAATGCGCCGATTATCCTCC+TGG + chr2_2:20007094-20007113 None:intergenic 55.0%
GGAGGATAATCGGCGCATTG+TGG - chr2_2:20007094-20007113 Msa0243160:CDS 55.0%
CGGCGCATTGTGGTCAGTAA+TGG - chr2_2:20007104-20007123 Msa0243160:CDS 55.0%
GGAATGTGGCAAACGAGTGG+CGG - chr2_2:20007161-20007180 Msa0243160:CDS 55.0%
TCGCATCACATGGCAGATGG+TGG - chr2_2:20009172-20009191 Msa0243160:intron 55.0%
!! CATGGCAGATGGTGGATGCT+TGG - chr2_2:20009180-20009199 Msa0243160:intron 55.0%
!! TGGCAGATGGTGGATGCTTG+GGG - chr2_2:20009182-20009201 Msa0243160:intron 55.0%
! GGAGGATGGGGTTTGTTCCA+AGG - chr2_2:20009203-20009222 Msa0243160:intron 55.0%
GCCTGCTGTAGCAGGATCAA+TGG - chr2_2:20009432-20009451 Msa0243160:intron 55.0%
GGCAGACAAGTGGTGGTTGG+GGG - chr2_2:20005545-20005564 Msa0243160:CDS 60.0%
AGACAAGTGGTGGTTGGGGG+AGG - chr2_2:20005548-20005567 Msa0243160:CDS 60.0%
GGGTTGAACCTCCGACCTTG+TGG - chr2_2:20006013-20006032 Msa0243160:intron 60.0%
GAGAGTAGCCCGCACAGGAT+AGG - chr2_2:20006859-20006878 Msa0243160:intron 60.0%
! TGTGGCAAACGAGTGGCGGA+TGG - chr2_2:20007165-20007184 Msa0243160:intron 60.0%
!! GTGGCAAACGAGTGGCGGAT+GGG - chr2_2:20007166-20007185 Msa0243160:intron 60.0%
!! TGGCAAACGAGTGGCGGATG+GGG - chr2_2:20007167-20007186 Msa0243160:intron 60.0%
!! CAGATGGTGGATGCTTGGGG+AGG - chr2_2:20009185-20009204 Msa0243160:intron 60.0%
! TGGTGGATGCTTGGGGAGGA+TGG - chr2_2:20009189-20009208 Msa0243160:intron 60.0%
GGTGGATGCTTGGGGAGGAT+GGG - chr2_2:20009190-20009209 Msa0243160:intron 60.0%
GTGGATGCTTGGGGAGGATG+GGG - chr2_2:20009191-20009210 Msa0243160:intron 60.0%
AACCTGCAGCCTGCTGTAGC+AGG - chr2_2:20009424-20009443 Msa0243160:intron 60.0%
ATCCTGCTACAGCAGGCTGC+AGG + chr2_2:20009429-20009448 None:intergenic 60.0%
GGAAGCAGCAGGGAAAGGCA+AGG - chr2_2:20009546-20009565 Msa0243160:CDS 60.0%
TGGTGGAGAGTAGCCCGCAC+AGG - chr2_2:20006854-20006873 Msa0243160:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 20005235 20009875 20005235 ID=Msa0243160;Name=Msa0243160
chr2_2 mRNA 20005235 20009875 20005235 ID=Msa0243160-mRNA-1;Parent=Msa0243160;Name=Msa0243160-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.75|0.66|1|0.87|0.77|9|257|530
chr2_2 exon 20005235 20005677 20005235 ID=Msa0243160-mRNA-1:exon:8078;Parent=Msa0243160-mRNA-1
chr2_2 exon 20005803 20005922 20005803 ID=Msa0243160-mRNA-1:exon:8077;Parent=Msa0243160-mRNA-1
chr2_2 exon 20006085 20006196 20006085 ID=Msa0243160-mRNA-1:exon:8076;Parent=Msa0243160-mRNA-1
chr2_2 exon 20006308 20006387 20006308 ID=Msa0243160-mRNA-1:exon:8075;Parent=Msa0243160-mRNA-1
chr2_2 exon 20006476 20006564 20006476 ID=Msa0243160-mRNA-1:exon:8074;Parent=Msa0243160-mRNA-1
chr2_2 exon 20007033 20007181 20007033 ID=Msa0243160-mRNA-1:exon:8073;Parent=Msa0243160-mRNA-1
chr2_2 exon 20007356 20007440 20007356 ID=Msa0243160-mRNA-1:exon:8072;Parent=Msa0243160-mRNA-1
chr2_2 exon 20007838 20008190 20007838 ID=Msa0243160-mRNA-1:exon:8071;Parent=Msa0243160-mRNA-1
chr2_2 exon 20009457 20009875 20009457 ID=Msa0243160-mRNA-1:exon:8070;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20009457 20009875 20009457 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20007838 20008190 20007838 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20007356 20007440 20007356 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20007033 20007181 20007033 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20006476 20006564 20006476 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20006308 20006387 20006308 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20006085 20006196 20006085 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20005803 20005922 20005803 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 CDS 20005492 20005677 20005492 ID=Msa0243160-mRNA-1:cds;Parent=Msa0243160-mRNA-1
chr2_2 three_prime_UTR 20005235 20005491 20005235 ID=Msa0243160-mRNA-1:three_prime_utr;Parent=Msa0243160-mRNA-1
Gene Sequence

>Msa0243160

CTGAACAAACCAACTAAAACATTTCCAATTTCAATTCTCCAATTTGGTTCGTTATCCTCTTCTTCTTCTTCTCAAAAATCCATGGCAGTGGTATCTTCAAGCCACAACCTATTCTCCACTTTCACTCGCTTCAACAACTCATCAAGAACCAATCCCCACTCACAGAGAACCAACAGCGCAAGATTGATTCGAATTCGATGCAGTGGTGATTTGAGCACATGTGCTACAAACACAGTTGAGAATCAGCAGCGAGTGAAACTGAGTAACGGAAACGATTCATTGGAAATATGTAGAGTTCTTAATGGAATGTGGCAGACAAGTGGTGGTTGGGGGAGGATTGATAGAGACGACGCCGTTGAAGCTATGCTCCGGTATGCTGATTCCGGCTTATCTACCTTCGACATGGCTGATCACTGTATAGTTTCTGCTGTTGCTAAAGCTACTTTTCACACTTTGAGCAGTTTGAAAATGACTGAGTTATTACAGCATTCTTTGAGCAAATTCACTTATTACAGTCCGAACAGAACACCAACAAGAGGAATTGCAACAAGAGAATATAAGCATTTGAGACCATGTCAGTGTGTGACTACCCAGGAGGATAATCGGCGCATTGTGGTCAGTAATGGGAAGGATTCATTGGATATAACTCGGGTTGTGAATGGAATGTGGCAAACGAGTGGCGGATGGGGCAAAATTGATAGGGATGAGGCCGTTGACTCTATGCTTAAATACGCTGATGCTGGATTAACCACTTTTGATATGGCTGATATATATGGGCCAGCTGAAGATCTATATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGGCCACCAGAATTTTTGGAAAAGGTCAGAGGTCTCACTAAGTGGGTGCCACCGCCAGTTAAGATGACAAGTAGCTTTGTAAGAGACAACATTAATGTGTCAAGGAAGAGAATGGACGTGGAATCCTTGGATATGCTTCAGTTCCACTGGTATTTAAATTCTACCCCTCTTGTTGTTTGGTGTAAAATCAAAACTATAGCTCTAACAAATTTTGATACCGAGAGATTACAAATTATTCTTGAAAATGAGATTCCCATTGTGAGCAATCAGGTACAACATTCACTTGTTGATATGCGTCCCCAACAGAAAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAACTGATAACGTATGGGACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAAACATCCCTTTTGCTGGACCTGCAATAAATACTCCATCCCTCTCAAAATACAAAAGGATGGTGGATGCTTGGGGAGGATGGGGTTTGTTCCAAGGACTTCTTCGAACTCTTAAACAAGTATCTACTAAGCATGGCGTTTCAATTCCAACTGTTGCTGTGAAGTATATACTAGACCAGCCTGCTGTAGCAGGATCAATGGTTGGTGTAAGACTTGGCTTGTCAGAACATATTCAAGACTGCAATGCTATCTTTTCACTTGTTCTTGATGAAGAAGATGTAAACAGCATAAGGGAAGCAGCAGGGAAAGGCAAGGATCTTCTTAAAGTGATTGGTGATTGTGGAGATGAGTACAGGCGTGCATGA

Protein sequence

>Msa0243160

LNKPTKTFPISILQFGSLSSSSSSQKSMAVVSSSHNLFSTFTRFNNSSRTNPHSQRTNSARLIRIRCSGDLSTCATNTVENQQRVKLSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVEAMLRYADSGLSTFDMADHCIVSAVAKATFHTLSSLKMTELLQHSLSKFTYYSPNRTPTRGIATREYKHLRPCQCVTTQEDNRRIVVSNGKDSLDITRVVNGMWQTSGGWGKIDRDEAVDSMLKYADAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLEKVRGLTKWVPPPVKMTSSFVRDNINVSRKRMDVESLDMLQFHWYLNSTPLVVWCKIKTIALTNFDTERLQIILENEIPIVSNQVQHSLVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNINIPFAGPAINTPSLSKYKRMVDAWGGWGLFQGLLRTLKQVSTKHGVSIPTVAVKYILDQPAVAGSMVGVRLGLSEHIQDCNAIFSLVLDEEDVNSIREAAGKGKDLLKVIGDCGDEYRRA*