AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552270 MtrunA17_Chr4g0037701 98.101 158 3 0 1 158 1 158 3.00e-114 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552270 AT1G50300.1 69.799 149 36 2 10 158 5 144 5.33e-63 198

Find 194 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAAAGATTTGTACCTTAT+TGG 0.130304 4_1:-48743394 None:intergenic
TCAGTTGACCTTATGTAAAT+TGG 0.185736 4_1:-48743353 None:intergenic
GAAACTGCACGAGTGCTTTC+AGG 0.188974 4_1:+48745717 Msa0552270:three_prime_UTR
GGAAAATTTGCTCCTTCTAA+TGG 0.205983 4_1:+48741820 Msa0552270:CDS
GGCCGTGGCAGGGGACGTTC+TGG 0.214033 4_1:+48742677 Msa0552270:three_prime_UTR
GTCACGCGCTTCTTCGATTC+TGG 0.214137 4_1:+48741116 Msa0552270:five_prime_UTR
AATATGTTGGCTGAATATTT+TGG 0.237030 4_1:+48741883 Msa0552270:CDS
ATATAATGTTACTTGGAAAT+TGG 0.239183 4_1:+48746515 Msa0552270:three_prime_UTR
GCTGGTGCTTCTGGCGTTGC+AGG 0.246144 4_1:+48742647 Msa0552270:three_prime_UTR
ATGCAAAAGGGGACGCAATT+TGG 0.252761 4_1:-48743210 None:intergenic
GCACGCCCTGCTGGTGCTTC+TGG 0.253618 4_1:+48742638 Msa0552270:three_prime_UTR
TTATTGATGAATCAGGTTAT+TGG 0.256786 4_1:-48746563 None:intergenic
CCAGTTGTTGTAGCAAATTT+AGG 0.257837 4_1:+48743528 Msa0552270:three_prime_UTR
CTCTTGTTGCCATGGTTTGC+TGG 0.262191 4_1:-48742433 None:intergenic
CAGGAGGAGGTGGCCGTGGC+AGG 0.278126 4_1:+48742666 Msa0552270:three_prime_UTR
GGTGCAACTGCAGGGCTATT+TGG 0.284772 4_1:+48742731 Msa0552270:three_prime_UTR
TGCAAGTTGGCTATATGATA+TGG 0.287704 4_1:+48743581 Msa0552270:three_prime_UTR
TGGTTACGGAGGCATAATTT+TGG 0.292568 4_1:+48740899 Msa0552270:five_prime_UTR
CGTTGCCCAGTTTCATCAAT+TGG 0.299725 4_1:+48742928 Msa0552270:three_prime_UTR
GATTCCATGGCAAGCATTCC+TGG 0.304742 4_1:+48741799 Msa0552270:exon
TTTAAGAAATGATTAAATAA+TGG 0.305688 4_1:+48740843 Msa0552270:five_prime_UTR
CCTAAATTTGCTACAACAAC+TGG 0.307018 4_1:-48743528 None:intergenic
GTTACAATTTACAGCCAATA+AGG 0.309628 4_1:+48743380 Msa0552270:three_prime_UTR
GTTAACCTCTCCCCGGGTTC+TGG 0.309957 4_1:+48743423 Msa0552270:three_prime_UTR
ATGTCTGCAACTTGCCTTAT+GGG 0.313152 4_1:+48741851 Msa0552270:CDS
TGGAACCATTGGAGTTATAA+AGG 0.318896 4_1:+48741903 Msa0552270:CDS
GGTGAGCTGTATGATGAATT+TGG 0.319502 4_1:+48745657 Msa0552270:three_prime_UTR
TGCTTTCAGGGCGTGCTGGT+TGG 0.320529 4_1:+48745730 Msa0552270:three_prime_UTR
AGTAACCCAATTGATGAAAC+TGG 0.324820 4_1:-48742934 None:intergenic
GCTTTCAGGGCGTGCTGGTT+GGG 0.324986 4_1:+48745731 Msa0552270:three_prime_UTR
GCTATATGATATGGGGCTTA+TGG 0.325758 4_1:+48743590 Msa0552270:three_prime_UTR
TATGTCTGCAACTTGCCTTA+TGG 0.328564 4_1:+48741850 Msa0552270:CDS
AGTGATGTCGATGGTGTTAA+TGG 0.330703 4_1:+48742384 Msa0552270:CDS
TTCTCATTTCGTTGGAAAAC+GGG 0.335712 4_1:+48746724 Msa0552270:three_prime_UTR
GAAAATTTGCTCCTTCTAAT+GGG 0.344168 4_1:+48741821 Msa0552270:CDS
TGTGGAAGTGCACGCCCTGC+TGG 0.347172 4_1:+48742629 Msa0552270:three_prime_UTR
CGTCCAGCTGGTGCAACTGC+AGG 0.354707 4_1:+48742722 Msa0552270:three_prime_UTR
AGTTTCAGATTGCTGTGTTT+TGG 0.356059 4_1:-48745700 None:intergenic
GTACAGGGAAACCTAAAATA+TGG 0.363199 4_1:+48742136 Msa0552270:CDS
CTGCTATTGCAGTATATGTT+TGG 0.371572 4_1:-48742317 None:intergenic
GGCTATTTGGTCCCAATGAC+TGG 0.387107 4_1:+48742744 Msa0552270:three_prime_UTR
CGTAACCATTGCCCTGCTCC+AGG 0.389492 4_1:-48740884 None:intergenic
GGACGTTCTGGGCAAGATGC+AGG 0.393484 4_1:+48742689 Msa0552270:three_prime_UTR
GGAGGAGGTGGCCGTGGCAG+GGG 0.394233 4_1:+48742668 Msa0552270:three_prime_UTR
TTAACCAGTGCCCCTGGAGC+AGG 0.412858 4_1:+48740872 Msa0552270:five_prime_UTR
AAATTAATACCCAATGCAAA+AGG 0.414497 4_1:-48743223 None:intergenic
GTTCCAACGGTGCACAATCT+TGG 0.416029 4_1:-48743552 None:intergenic
ATAGGTGTGGCAATATCAAT+TGG 0.418424 4_1:+48743814 Msa0552270:intron
AGGTATCAATTAAAGAAAAC+AGG 0.421248 4_1:-48743116 None:intergenic
TTTCTCATTTCGTTGGAAAA+CGG 0.426128 4_1:+48746723 Msa0552270:three_prime_UTR
GGTTGGGAGGTTGAGGATCT+AGG 0.428724 4_1:+48745747 Msa0552270:three_prime_UTR
GATTGTGCACCGTTGGAACT+TGG 0.429835 4_1:+48743556 Msa0552270:three_prime_UTR
ACGTCAGTACCAGCAACAAC+CGG 0.429856 4_1:-48742342 None:intergenic
GTTCTGATTATTGATGAATC+AGG 0.430624 4_1:-48746570 None:intergenic
TTGCCCTGCTCCAGGGGCAC+TGG 0.431857 4_1:-48740876 None:intergenic
TGGCCTTTCCAATTTACATA+AGG 0.432689 4_1:+48743345 Msa0552270:three_prime_UTR
CTGGAGCAGGGCAATGGTTA+CGG 0.435644 4_1:+48740885 Msa0552270:five_prime_UTR
GCCGTGGCAGGGGACGTTCT+GGG 0.436637 4_1:+48742678 Msa0552270:three_prime_UTR
CATATCACAGACCTTGTATT+CGG 0.440223 4_1:-48742471 None:intergenic
AGGAGGAGGTGGCCGTGGCA+GGG 0.441158 4_1:+48742667 Msa0552270:three_prime_UTR
GCGTGCTGGTTGGGAGGTTG+AGG 0.442475 4_1:+48745740 Msa0552270:three_prime_UTR
ATAGCAGACCCGGTTGTTGC+TGG 0.443186 4_1:+48742333 Msa0552270:CDS
CAATCGCCCTCTTGTTGCCA+TGG 0.443269 4_1:-48742441 None:intergenic
ACGTTCTGGGCAAGATGCAG+GGG 0.444833 4_1:+48742691 Msa0552270:three_prime_UTR
TAGATGATGAAATTATAGAT+TGG 0.449179 4_1:-48743252 None:intergenic
GCAAGTTGGCTATATGATAT+GGG 0.449715 4_1:+48743582 Msa0552270:three_prime_UTR
ACATCACTTTCAGTTTCCTC+TGG 0.451741 4_1:-48742369 None:intergenic
TATTATGTTGGACGTAGTGC+TGG 0.453266 4_1:+48742974 Msa0552270:three_prime_UTR
CTTTGTTGTTAACCTCTCCC+CGG 0.455729 4_1:+48743416 Msa0552270:three_prime_UTR
GCAACGCCAGAAGCACCAGC+AGG 0.461187 4_1:-48742644 None:intergenic
AAACTGCACGAGTGCTTTCA+GGG 0.463175 4_1:+48745718 Msa0552270:three_prime_UTR
GTTGCCCAGTTTCATCAATT+GGG 0.464874 4_1:+48742929 Msa0552270:three_prime_UTR
GCTTCTGGCGTTGCAGGAGG+AGG 0.468468 4_1:+48742653 Msa0552270:three_prime_UTR
AGCCCTGCAGTTGCACCAGC+TGG 0.469244 4_1:-48742725 None:intergenic
GTTGCAGGAGGAGGTGGCCG+TGG 0.474248 4_1:+48742662 Msa0552270:three_prime_UTR
AGAAGAAATTAGCGAGGAGG+GGG 0.474469 4_1:+48741003 Msa0552270:five_prime_UTR
GAGCAACATATAATGTTACT+TGG 0.474540 4_1:+48746508 Msa0552270:three_prime_UTR
ACGTTGCAAAGTGCAAAATC+AGG 0.479095 4_1:-48743139 None:intergenic
GTCACAGTAGCATCTCCCTT+TGG 0.480691 4_1:-48742186 None:intergenic
GAGGACAAGGACCAGAACCC+GGG 0.480710 4_1:-48743434 None:intergenic
CGAGTGCTTTCAGGGCGTGC+TGG 0.480801 4_1:+48745726 Msa0552270:three_prime_UTR
TCTGGCGTTGCAGGAGGAGG+TGG 0.481544 4_1:+48742656 Msa0552270:three_prime_UTR
TGACAAGAATATAAGAATGT+AGG 0.483634 4_1:-48746811 None:intergenic
CATGGCAACAAGAGGGCGAT+TGG 0.484158 4_1:+48742442 Msa0552270:CDS
GACGTTCTGGGCAAGATGCA+GGG 0.484264 4_1:+48742690 Msa0552270:three_prime_UTR
CATTGGACAAGGCCAGTCAT+TGG 0.485145 4_1:-48742756 None:intergenic
CTCGTACAGTCTCACAATAT+TGG 0.485907 4_1:+48740736 Msa0552270:five_prime_UTR
AGATGATGAAATTATAGATT+GGG 0.487422 4_1:-48743251 None:intergenic
TTGCAGAAAGATAAACGTAC+AGG 0.490948 4_1:+48742120 Msa0552270:intron
ACACCACCCTCGTTGTGCCC+AGG 0.493132 4_1:-48743876 None:intergenic
TCAATTAAAATAAAATGAAA+AGG 0.494113 4_1:+48740957 Msa0552270:five_prime_UTR
ATTGGACAAGGCCAGTCATT+GGG 0.494257 4_1:-48742755 None:intergenic
GTAACCATTGCCCTGCTCCA+GGG 0.494352 4_1:-48740883 None:intergenic
TTCATGATATTGAGATTCCA+TGG 0.494827 4_1:+48741786 Msa0552270:exon
ATTTGCAATACAAACAAGCC+TGG 0.495239 4_1:+48743858 Msa0552270:three_prime_UTR
AGAGGCAGAGGTCAAATTGA+TGG 0.499095 4_1:+48742408 Msa0552270:CDS
AATTAATACCCAATGCAAAA+GGG 0.499286 4_1:-48743222 None:intergenic
GAGTCAAGGGACCGTTATGA+TGG 0.500996 4_1:+48746443 Msa0552270:three_prime_UTR
GAGATTTGTTAACTTTGCTA+AGG 0.502048 4_1:+48743171 Msa0552270:three_prime_UTR
CTTGTTGTGTTATATTATGT+TGG 0.502684 4_1:+48742962 Msa0552270:three_prime_UTR
AGACAGAGGAAGAGAGTCAA+GGG 0.502977 4_1:+48746430 Msa0552270:three_prime_UTR
ATGAAATTATAGATTGGGTC+GGG 0.503423 4_1:-48743246 None:intergenic
TTAAACAGAGGAGGGCGAGC+TGG 0.505797 4_1:+48745490 Msa0552270:intron
ATTGGATGTGTCCGAATACA+AGG 0.508039 4_1:+48742460 Msa0552270:CDS
ACATAGATAGACCCATTAGA+AGG 0.508080 4_1:-48741832 None:intergenic
AAAACACATAGGATCTGCTT+GGG 0.509864 4_1:+48746635 Msa0552270:three_prime_UTR
GCCCAGAACGTCCCCTGCCA+CGG 0.511393 4_1:-48742679 None:intergenic
AAGAAGAAATTAGCGAGGAG+GGG 0.514944 4_1:+48741002 Msa0552270:five_prime_UTR
GTGCCCCTGGAGCAGGGCAA+TGG 0.517779 4_1:+48740879 Msa0552270:five_prime_UTR
ATATTATCATCGGTCCCATA+AGG 0.519106 4_1:-48741865 None:intergenic
GGACCAAGATTGTGCACCGT+TGG 0.519352 4_1:+48743549 Msa0552270:three_prime_UTR
TATCATATTCAATTTACTTG+TGG 0.520555 4_1:-48743009 None:intergenic
GTCCAGCTGGTGCAACTGCA+GGG 0.522936 4_1:+48742723 Msa0552270:three_prime_UTR
AGATGCTACTGTGACATATG+AGG 0.528491 4_1:+48742194 Msa0552270:CDS
GGCACAACGAGGGTGGTGTA+AGG 0.528607 4_1:+48743880 Msa0552270:three_prime_UTR
TGACCTTATGTAAATTGGAA+AGG 0.531504 4_1:-48743348 None:intergenic
TTCAGGGCGTGCTGGTTGGG+AGG 0.536345 4_1:+48745734 Msa0552270:three_prime_UTR
ATCAGACAACGGAAAGAATG+TGG 0.537258 4_1:-48742800 None:intergenic
GTGATTTATCGCTCCGTCTG+CGG 0.545831 4_1:-48741029 None:intergenic
TTTGTTGTTAACCTCTCCCC+GGG 0.546008 4_1:+48743417 Msa0552270:three_prime_UTR
TTACAAAGAGCTTGATGAAG+AGG 0.552917 4_1:+48745516 Msa0552270:three_prime_UTR
TAACCATTGCCCTGCTCCAG+GGG 0.553140 4_1:-48740882 None:intergenic
TAGGTGTGGCAATATCAATT+GGG 0.553457 4_1:+48743815 Msa0552270:intron
AAAGAGAAGTTCAGTAGATG+AGG 0.554170 4_1:-48743453 None:intergenic
TTGGAAATTGGCAGACATAG+TGG 0.554640 4_1:+48746527 Msa0552270:three_prime_UTR
GTCGATGGTGTTAATGGAAG+AGG 0.554855 4_1:+48742390 Msa0552270:CDS
CCATACCTTTATAACTCCAA+TGG 0.555137 4_1:-48741908 None:intergenic
GGTGCTTCTGGCGTTGCAGG+AGG 0.557530 4_1:+48742650 Msa0552270:three_prime_UTR
CAAGGTCTGTGATATGAGAT+TGG 0.557604 4_1:+48742478 Msa0552270:exon
TTCTCTGCTCTCCATCATAA+CGG 0.558553 4_1:-48746454 None:intergenic
AAAGAGACGAATGAACCAAA+GGG 0.558771 4_1:+48742171 Msa0552270:CDS
AAGGACCAGAACCCGGGGAG+AGG 0.560784 4_1:-48743428 None:intergenic
CTGCAGTTGCACCAGCTGGA+CGG 0.561682 4_1:-48742721 None:intergenic
AAAATGTTAACCAGTGCCCC+TGG 0.562473 4_1:+48740866 Msa0552270:five_prime_UTR
GGTGTTAATGGAAGAGGCAG+AGG 0.562740 4_1:+48742396 Msa0552270:CDS
AGATCTATCTATCTATTCAT+CGG 0.570434 4_1:+48741052 Msa0552270:five_prime_UTR
TTCAGCCAACATATTATCAT+CGG 0.570648 4_1:-48741875 None:intergenic
CTGCCGTGGCTGCTGTTGAG+TGG 0.571241 4_1:+48742226 Msa0552270:CDS
TTGGAACTTGGAGTGCAAGT+TGG 0.571736 4_1:+48743568 Msa0552270:three_prime_UTR
TGAGGACAAGGACCAGAACC+CGG 0.573254 4_1:-48743435 None:intergenic
AAAGAAGAAATTAGCGAGGA+GGG 0.577000 4_1:+48741001 Msa0552270:five_prime_UTR
TCAGACAACGGAAAGAATGT+GGG 0.578344 4_1:-48742799 None:intergenic
CATACTCTTGTGAATGAACA+TGG 0.578448 4_1:+48743072 Msa0552270:three_prime_UTR
AAGTTCAGTAGATGAGGACA+AGG 0.585904 4_1:-48743447 None:intergenic
GAGACAGAGGAAGAGAGTCA+AGG 0.587406 4_1:+48746429 Msa0552270:three_prime_UTR
GATGAAATTATAGATTGGGT+CGG 0.590550 4_1:-48743247 None:intergenic
TCGAAGAAACTAAACGTCGC+AGG 0.593458 4_1:+48745542 Msa0552270:three_prime_UTR
AATGTGACAAAATCGTACAT+TGG 0.593575 4_1:-48742773 None:intergenic
AACAGAGGAGGGCGAGCTGG+AGG 0.593908 4_1:+48745493 Msa0552270:intron
AAACCACTCAACAGCAGCCA+CGG 0.598977 4_1:-48742229 None:intergenic
CAAAGAGACGAATGAACCAA+AGG 0.600702 4_1:+48742170 Msa0552270:CDS
TAACCAGTGCCCCTGGAGCA+GGG 0.603001 4_1:+48740873 Msa0552270:five_prime_UTR
AAGCCTGGGCACAACGAGGG+TGG 0.605160 4_1:+48743873 Msa0552270:three_prime_UTR
TTTGCAATACAAACAAGCCT+GGG 0.606882 4_1:+48743859 Msa0552270:three_prime_UTR
ATTAATACCCAATGCAAAAG+GGG 0.606970 4_1:-48743221 None:intergenic
CAACGCCAGAAGCACCAGCA+GGG 0.613406 4_1:-48742643 None:intergenic
CGTCAGTACCAGCAACAACC+GGG 0.613629 4_1:-48742341 None:intergenic
CAGCAAACCATGGCAACAAG+AGG 0.614626 4_1:+48742434 Msa0552270:CDS
GAGAAACAGAGAGCATAACG+AGG 0.624195 4_1:+48746472 Msa0552270:three_prime_UTR
CACAAGGACAAAAGAGACAG+AGG 0.624390 4_1:-48743476 None:intergenic
GTAACCCAATTGATGAAACT+GGG 0.626079 4_1:-48742933 None:intergenic
TTGCTTGAGTGCAAATCTAG+TGG 0.627162 4_1:+48743325 Msa0552270:three_prime_UTR
GGAAGCAATCATCATGTGAG+AGG 0.629938 4_1:+48743302 Msa0552270:three_prime_UTR
TGGGACCGATGATAATATGT+TGG 0.630026 4_1:+48741870 Msa0552270:CDS
CGGGGTGCGTGTAATCGCTG+TGG 0.632515 4_1:+48742611 Msa0552270:three_prime_UTR
ACAGAGAGCATAACGAGGGG+AGG 0.633897 4_1:+48746477 Msa0552270:three_prime_UTR
ACAGCAGCCACGGCAGCATG+TGG 0.634443 4_1:-48742219 None:intergenic
GTTGTTGCTGGTACTGACGT+CGG 0.634611 4_1:+48742345 Msa0552270:CDS
CAAGTTGGCTATATGATATG+GGG 0.634808 4_1:+48743583 Msa0552270:three_prime_UTR
AGCAAACCATGGCAACAAGA+GGG 0.635048 4_1:+48742435 Msa0552270:CDS
ATCAACTGCCACAACCCACA+AGG 0.638214 4_1:-48743492 None:intergenic
AGAAACAGAGAGCATAACGA+GGG 0.639525 4_1:+48746473 Msa0552270:three_prime_UTR
TGAGGATCCACATGCTGCCG+TGG 0.639570 4_1:+48742212 Msa0552270:CDS
TGGTACTGACGTCGGACCAG+AGG 0.639768 4_1:+48742353 Msa0552270:CDS
TGCAGAAAGATAAACGTACA+GGG 0.643687 4_1:+48742121 Msa0552270:intron
TACAATTGGAGTTTATATAG+CGG 0.645043 4_1:+48742275 Msa0552270:CDS
AACAAGCCTGGGCACAACGA+GGG 0.649708 4_1:+48743870 Msa0552270:three_prime_UTR
CGTTCTGGGCAAGATGCAGG+GGG 0.650964 4_1:+48742692 Msa0552270:three_prime_UTR
ATATACTGCAATAGCAGACC+CGG 0.656715 4_1:+48742323 Msa0552270:CDS
AGGACAAGGACCAGAACCCG+GGG 0.657044 4_1:-48743433 None:intergenic
ACTTGCACTCCAAGTTCCAA+CGG 0.658100 4_1:-48743565 None:intergenic
TTGATGGTTCCAGCAAACCA+TGG 0.662097 4_1:+48742424 Msa0552270:CDS
AAAAGAAGAAATTAGCGAGG+AGG 0.662730 4_1:+48741000 Msa0552270:five_prime_UTR
GAAACAGAGAGCATAACGAG+GGG 0.664372 4_1:+48746474 Msa0552270:three_prime_UTR
ACAAAATCGTACATTGGACA+AGG 0.668648 4_1:-48742767 None:intergenic
CAGACAACGGAAAGAATGTG+GGG 0.668869 4_1:-48742798 None:intergenic
AGTATAAATAAATCAGACAA+CGG 0.673430 4_1:-48742811 None:intergenic
CTGAAAAGAAGAAATTAGCG+AGG 0.677265 4_1:+48740997 Msa0552270:five_prime_UTR
TTGCAAAGTGCAAAATCAGG+AGG 0.679026 4_1:-48743136 None:intergenic
AAGAAACTAAACGTCGCAGG+CGG 0.683518 4_1:+48745545 Msa0552270:three_prime_UTR
GCAATATCAATTGGGCAAAG+CGG 0.687100 4_1:+48743823 Msa0552270:three_prime_UTR
GAGCAGGGCAATGGTTACGG+AGG 0.693398 4_1:+48740888 Msa0552270:five_prime_UTR
AAACAAGCCTGGGCACAACG+AGG 0.703032 4_1:+48743869 Msa0552270:three_prime_UTR
GAAACTGAAAGTGATGTCGA+TGG 0.721373 4_1:+48742375 Msa0552270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTACTAAATTTTTTTTA+GGG - chr4_1:48740683-48740702 None:intergenic 10.0%
!!! TTAGTTACTAAATTTTTTTT+AGG - chr4_1:48740684-48740703 None:intergenic 10.0%
!! TTTAAGAAATGATTAAATAA+TGG + chr4_1:48740843-48740862 Msa0552270:five_prime_UTR 10.0%
!! TCAATTAAAATAAAATGAAA+AGG + chr4_1:48740957-48740976 Msa0552270:five_prime_UTR 10.0%
!! ATTTATTAAAAAAATGTGAA+TGG - chr4_1:48745429-48745448 None:intergenic 10.0%
!! AATACATGTTATATATAAAT+TGG + chr4_1:48745596-48745615 Msa0552270:intron 10.0%
!! AAAAATAACAAAAAGATAAT+AGG - chr4_1:48745983-48746002 None:intergenic 10.0%
!!! ATTGAGTTTTTATTTTACTT+AGG - chr4_1:48740942-48740961 None:intergenic 15.0%
!! TTAAAAATAAATGAAAACCA+AGG + chr4_1:48744005-48744024 Msa0552270:intron 15.0%
!! AATCATAGTAATAAGTAATA+TGG + chr4_1:48744696-48744715 Msa0552270:intron 15.0%
!!! TATATTTTAGTATTTCTCTT+TGG - chr4_1:48744761-48744780 None:intergenic 15.0%
!! ATGTATTTATGTAAAATGAA+GGG - chr4_1:48745392-48745411 None:intergenic 15.0%
!! TATGTATTTATGTAAAATGA+AGG - chr4_1:48745393-48745412 None:intergenic 15.0%
!! TTTACATAAATACATACATA+CGG + chr4_1:48745397-48745416 Msa0552270:intron 15.0%
!! TTTGTAAATAAAAAACACAT+AGG + chr4_1:48746624-48746643 Msa0552270:three_prime_UTR 15.0%
!!! TTTAGGGTTAATTATGTTTT+TGG - chr4_1:48740667-48740686 None:intergenic 20.0%
!! TCAATTATTATACAGGAAAA+TGG - chr4_1:48741175-48741194 None:intergenic 20.0%
!! ATAATATGTGATTACTTGAA+TGG + chr4_1:48741950-48741969 Msa0552270:intron 20.0%
!!! TCATGATATAACCATATTTT+AGG - chr4_1:48742150-48742169 None:intergenic 20.0%
!!! TTTAACAACAAAGATTTTCA+TGG + chr4_1:48742249-48742268 Msa0552270:CDS 20.0%
!! AGTATAAATAAATCAGACAA+CGG - chr4_1:48742814-48742833 None:intergenic 20.0%
!! TATCATATTCAATTTACTTG+TGG - chr4_1:48743012-48743031 None:intergenic 20.0%
!! AGATGATGAAATTATAGATT+GGG - chr4_1:48743254-48743273 None:intergenic 20.0%
!! TAGATGATGAAATTATAGAT+TGG - chr4_1:48743255-48743274 None:intergenic 20.0%
!!! TAGTTCTCTATGAATTTTAA+AGG + chr4_1:48743281-48743300 Msa0552270:three_prime_UTR 20.0%
!!! TATCTTTTACTACCATAAAT+GGG - chr4_1:48744266-48744285 None:intergenic 20.0%
!!! TCTCTATTTATTTAGGATTA+GGG - chr4_1:48744664-48744683 None:intergenic 20.0%
!!! TTCTCTATTTATTTAGGATT+AGG - chr4_1:48744665-48744684 None:intergenic 20.0%
!!! CCTTATTTCTCTATTTATTT+AGG - chr4_1:48744671-48744690 None:intergenic 20.0%
!! CCTAAATAAATAGAGAAATA+AGG + chr4_1:48744668-48744687 Msa0552270:intron 20.0%
!!! TCAATAACTGAAAAAGTATA+TGG - chr4_1:48745312-48745331 None:intergenic 20.0%
!! TTACATAAATACATACATAC+GGG + chr4_1:48745398-48745417 Msa0552270:intron 20.0%
!!! ACAATTTTGAGTTATCATTA+TGG + chr4_1:48745918-48745937 Msa0552270:intron 20.0%
!!! TTTTATTAGTTGTTCCTTTT+CGG + chr4_1:48746000-48746019 Msa0552270:intron 20.0%
!! TTTGTAAATTGGATATTTAC+AGG - chr4_1:48746271-48746290 None:intergenic 20.0%
!!! TTCTGTAACATTTTGTAAAT+TGG - chr4_1:48746282-48746301 None:intergenic 20.0%
!!! ATATAATGTTACTTGGAAAT+TGG + chr4_1:48746515-48746534 Msa0552270:three_prime_UTR 20.0%
!!! TTTTTTTTTTCTCATTTCGT+TGG + chr4_1:48746716-48746735 Msa0552270:three_prime_UTR 20.0%
!!! TTGAGACATTTTTTACATTT+AGG - chr4_1:48746772-48746791 None:intergenic 20.0%
! AGATCTATCTATCTATTCAT+CGG + chr4_1:48741052-48741071 Msa0552270:five_prime_UTR 25.0%
! TTATTATACAGGAAAATGGA+AGG - chr4_1:48741171-48741190 None:intergenic 25.0%
! TTGAAAGAGAACAAAATTTC+TGG - chr4_1:48741201-48741220 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_1:48741345-48741364 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_1:48741345-48741364 None:intergenic 25.0%
!! ATTAGGTTAGCATTTTCAAA+TGG + chr4_1:48741479-48741498 Msa0552270:intron 25.0%
! TACTACAAAATGTCAAATAG+TGG + chr4_1:48741584-48741603 Msa0552270:intron 25.0%
!!! AATATGTTGGCTGAATATTT+TGG + chr4_1:48741883-48741902 Msa0552270:CDS 25.0%
! AAGTAATCACATATTATCGT+AGG - chr4_1:48741947-48741966 None:intergenic 25.0%
! ATAAACAGAACCACATAAAT+GGG - chr4_1:48742045-48742064 None:intergenic 25.0%
! TACAATTGGAGTTTATATAG+CGG + chr4_1:48742275-48742294 Msa0552270:CDS 25.0%
!! CTTGTTGTGTTATATTATGT+TGG + chr4_1:48742962-48742981 Msa0552270:three_prime_UTR 25.0%
! AGGTATCAATTAAAGAAAAC+AGG - chr4_1:48743119-48743138 None:intergenic 25.0%
! AATTAATACCCAATGCAAAA+GGG - chr4_1:48743225-48743244 None:intergenic 25.0%
! AAATTAATACCCAATGCAAA+AGG - chr4_1:48743226-48743245 None:intergenic 25.0%
! TTTAATGTCAGGTATAAGTA+CGG - chr4_1:48743696-48743715 None:intergenic 25.0%
!! GTATCTTTTACTACCATAAA+TGG - chr4_1:48744267-48744286 None:intergenic 25.0%
!! GTAATACTTTTAATCCTTAG+AGG - chr4_1:48744431-48744450 None:intergenic 25.0%
! TACATTATGTTGATCTCAAA+TGG + chr4_1:48744448-48744467 Msa0552270:intron 25.0%
! ATCTCAATATTTGATATGTG+TGG + chr4_1:48744501-48744520 Msa0552270:intron 25.0%
! AGAAGATTTAATGTATGACA+TGG + chr4_1:48744529-48744548 Msa0552270:intron 25.0%
! ATTTAATGTATGACATGGTT+TGG + chr4_1:48744534-48744553 Msa0552270:intron 25.0%
!! CTCTATTTATTTAGGATTAG+GGG - chr4_1:48744663-48744682 None:intergenic 25.0%
! TAGATGATTTAGGTATATTG+TGG - chr4_1:48744869-48744888 None:intergenic 25.0%
!! GTTTAGTCTTTAGATGATTT+AGG - chr4_1:48744879-48744898 None:intergenic 25.0%
!! TCCTTCAACTTTTTATGTAA+TGG + chr4_1:48744926-48744945 Msa0552270:intron 25.0%
! ACCATTACATAAAAAGTTGA+AGG - chr4_1:48744930-48744949 None:intergenic 25.0%
! ATCGACCTTAATTTATTGTT+GGG + chr4_1:48745016-48745035 Msa0552270:intron 25.0%
! AAAACCCCAACAATAAATTA+AGG - chr4_1:48745024-48745043 None:intergenic 25.0%
! TTGAAATTACTTTGCTAACT+TGG + chr4_1:48745455-48745474 Msa0552270:intron 25.0%
! TGAAATTACTTTGCTAACTT+GGG + chr4_1:48745456-48745475 Msa0552270:intron 25.0%
!! GTTACTTTCTTATTAAACAG+AGG + chr4_1:48745478-48745497 Msa0552270:intron 25.0%
!! TGTTATATATAAATTGGCTC+TGG + chr4_1:48745602-48745621 Msa0552270:intron 25.0%
!!! ATGATTTTTTTCTTACTGTC+AGG + chr4_1:48745629-48745648 Msa0552270:intron 25.0%
! ATTGTAATCTAACAATGCTA+GGG - chr4_1:48745903-48745922 None:intergenic 25.0%
! AATTGTAATCTAACAATGCT+AGG - chr4_1:48745904-48745923 None:intergenic 25.0%
!! ACCATTTTCAAATACTTTCA+TGG + chr4_1:48745954-48745973 Msa0552270:intron 25.0%
!!! ACCATGAAAGTATTTGAAAA+TGG - chr4_1:48745958-48745977 None:intergenic 25.0%
!!! TATGTTTTGAAATAGTATGC+AGG - chr4_1:48746070-48746089 None:intergenic 25.0%
! AGTATAATTTAGATTTGTGC+AGG - chr4_1:48746156-48746175 None:intergenic 25.0%
! TGCACAAATCTAAATTATAC+TGG + chr4_1:48746155-48746174 Msa0552270:intron 25.0%
! ACATGAAATTATGAATCAGT+TGG + chr4_1:48746333-48746352 Msa0552270:intron 25.0%
! TTATTGATGAATCAGGTTAT+TGG - chr4_1:48746566-48746585 None:intergenic 25.0%
CTGGAACTCAATTATTATAC+AGG - chr4_1:48741182-48741201 None:intergenic 30.0%
TGCAAATTATGCAATCGAAA+AGG - chr4_1:48741257-48741276 None:intergenic 30.0%
! TTCTTATGATTTGCATCCAT+AGG + chr4_1:48741448-48741467 Msa0552270:intron 30.0%
ATCCATAGGCTTATTCAATT+AGG + chr4_1:48741462-48741481 Msa0552270:intron 30.0%
AACCTAATTGAATAAGCCTA+TGG - chr4_1:48741467-48741486 None:intergenic 30.0%
TTCATGATATTGAGATTCCA+TGG + chr4_1:48741786-48741805 Msa0552270:exon 30.0%
! GAAAATTTGCTCCTTCTAAT+GGG + chr4_1:48741821-48741840 Msa0552270:CDS 30.0%
TTCAGCCAACATATTATCAT+CGG - chr4_1:48741878-48741897 None:intergenic 30.0%
TTGCAAAGTGAGGTTTATTT+GGG + chr4_1:48741989-48742008 Msa0552270:intron 30.0%
!! CTTTTTGTTTCCCATTTATG+TGG + chr4_1:48742032-48742051 Msa0552270:intron 30.0%
GATAAACAGAACCACATAAA+TGG - chr4_1:48742046-48742065 None:intergenic 30.0%
! GATTTTCATGGCAATACAAT+TGG + chr4_1:48742261-48742280 Msa0552270:CDS 30.0%
AATGTGACAAAATCGTACAT+TGG - chr4_1:48742776-48742795 None:intergenic 30.0%
!! GAGATTTGTTAACTTTGCTA+AGG + chr4_1:48743171-48743190 Msa0552270:three_prime_UTR 30.0%
ATTAATACCCAATGCAAAAG+GGG - chr4_1:48743224-48743243 None:intergenic 30.0%
ATGAAATTATAGATTGGGTC+GGG - chr4_1:48743249-48743268 None:intergenic 30.0%
GATGAAATTATAGATTGGGT+CGG - chr4_1:48743250-48743269 None:intergenic 30.0%
TGACCTTATGTAAATTGGAA+AGG - chr4_1:48743351-48743370 None:intergenic 30.0%
TCAGTTGACCTTATGTAAAT+TGG - chr4_1:48743356-48743375 None:intergenic 30.0%
GTTACAATTTACAGCCAATA+AGG + chr4_1:48743380-48743399 Msa0552270:three_prime_UTR 30.0%
GTCAAAGATTTGTACCTTAT+TGG - chr4_1:48743397-48743416 None:intergenic 30.0%
CTTATACCTGACATTAAACT+TGG + chr4_1:48743698-48743717 Msa0552270:intron 30.0%
TCAATTCCAAGTTTAATGTC+AGG - chr4_1:48743707-48743726 None:intergenic 30.0%
!!! CTTGTCTTCTTTTTTGACAT+AGG + chr4_1:48743796-48743815 Msa0552270:intron 30.0%
CACTAATAGTATGTACTTGA+AGG - chr4_1:48743929-48743948 None:intergenic 30.0%
! GTGAAACTACATCTTTTCAT+TGG + chr4_1:48743964-48743983 Msa0552270:intron 30.0%
!!! CAAAATTCAGTTTTGTTAGC+CGG + chr4_1:48744097-48744116 Msa0552270:intron 30.0%
!!! AAAATTCAGTTTTGTTAGCC+GGG + chr4_1:48744098-48744117 Msa0552270:intron 30.0%
!!! GAAAATATTTTGATGCCAAG+TGG + chr4_1:48744235-48744254 Msa0552270:intron 30.0%
TTAATCCTTAGAGGAACAAA+AGG - chr4_1:48744422-48744441 None:intergenic 30.0%
AGTTCAATTCTTAAAGGTAG+AGG - chr4_1:48744807-48744826 None:intergenic 30.0%
GAGGATAGTTCAATTCTTAA+AGG - chr4_1:48744813-48744832 None:intergenic 30.0%
TCTACCATTTGTTCTATCAT+TGG + chr4_1:48744899-48744918 Msa0552270:intron 30.0%
CATCGACCTTAATTTATTGT+TGG + chr4_1:48745015-48745034 Msa0552270:intron 30.0%
TCGACCTTAATTTATTGTTG+GGG + chr4_1:48745017-48745036 Msa0552270:intron 30.0%
TCATACAAGATAGATGCAAT+GGG - chr4_1:48745063-48745082 None:intergenic 30.0%
ATCATACAAGATAGATGCAA+TGG - chr4_1:48745064-48745083 None:intergenic 30.0%
TTAGAGGTGAAAATAGGATA+TGG - chr4_1:48745118-48745137 None:intergenic 30.0%
AGGAATGAAAGACAAGTATA+TGG - chr4_1:48745234-48745253 None:intergenic 30.0%
TGGAAACATGATTTGAAAAC+AGG - chr4_1:48745254-48745273 None:intergenic 30.0%
! CTGAAAAAGTATATGGAAAC+AGG - chr4_1:48745305-48745324 None:intergenic 30.0%
AAATTCCAACATTTCGGATT+TGG - chr4_1:48745353-48745372 None:intergenic 30.0%
ACCTAGAAATTCCAACATTT+CGG - chr4_1:48745359-48745378 None:intergenic 30.0%
ACTTTCTTATTAAACAGAGG+AGG + chr4_1:48745481-48745500 Msa0552270:intron 30.0%
CTTTCTTATTAAACAGAGGA+GGG + chr4_1:48745482-48745501 Msa0552270:intron 30.0%
AGTTATCATTATGGCTATAG+CGG + chr4_1:48745927-48745946 Msa0552270:intron 30.0%
! ATCTAAATTATACTGGCTGT+TGG + chr4_1:48746162-48746181 Msa0552270:intron 30.0%
ATCCTTACATGAGCAAATTA+TGG - chr4_1:48746221-48746240 None:intergenic 30.0%
TAAGGATATGTAGAGATTCT+AGG + chr4_1:48746234-48746253 Msa0552270:intron 30.0%
CGGTATTATAAACAGTAAGT+TGG - chr4_1:48746372-48746391 None:intergenic 30.0%
CTTACTGTTTATAATACCGA+TGG + chr4_1:48746373-48746392 Msa0552270:intron 30.0%
GAGCAACATATAATGTTACT+TGG + chr4_1:48746508-48746527 Msa0552270:three_prime_UTR 30.0%
GTTCTGATTATTGATGAATC+AGG - chr4_1:48746573-48746592 None:intergenic 30.0%
TTTCTCATTTCGTTGGAAAA+CGG + chr4_1:48746723-48746742 Msa0552270:three_prime_UTR 30.0%
CTGAAAAGAAGAAATTAGCG+AGG + chr4_1:48740997-48741016 Msa0552270:five_prime_UTR 35.0%
AAAAGAAGAAATTAGCGAGG+AGG + chr4_1:48741000-48741019 Msa0552270:five_prime_UTR 35.0%
AAAGAAGAAATTAGCGAGGA+GGG + chr4_1:48741001-48741020 Msa0552270:five_prime_UTR 35.0%
GAAGCTGGAGATAATATCAT+AGG - chr4_1:48741323-48741342 None:intergenic 35.0%
AAATTGAATAATGCGGAAGC+TGG - chr4_1:48741338-48741357 None:intergenic 35.0%
ATCATAAGAAAAACGACACG+TGG - chr4_1:48741438-48741457 None:intergenic 35.0%
GTCAAATAGTGGTTATAGAG+TGG + chr4_1:48741595-48741614 Msa0552270:intron 35.0%
GTATTGTCAATTGCAGATCA+CGG - chr4_1:48741643-48741662 None:intergenic 35.0%
! TTAGAAGGAGCAAATTTTCC+AGG - chr4_1:48741820-48741839 None:intergenic 35.0%
! GGAAAATTTGCTCCTTCTAA+TGG + chr4_1:48741820-48741839 Msa0552270:CDS 35.0%
ACATAGATAGACCCATTAGA+AGG - chr4_1:48741835-48741854 None:intergenic 35.0%
ATATTATCATCGGTCCCATA+AGG - chr4_1:48741868-48741887 None:intergenic 35.0%
!!! GCTGAATATTTTGGAACCAT+TGG + chr4_1:48741892-48741911 Msa0552270:CDS 35.0%
TGGAACCATTGGAGTTATAA+AGG + chr4_1:48741903-48741922 Msa0552270:CDS 35.0%
CCATACCTTTATAACTCCAA+TGG - chr4_1:48741911-48741930 None:intergenic 35.0%
CCATTGGAGTTATAAAGGTA+TGG + chr4_1:48741908-48741927 Msa0552270:intron 35.0%
CAAATAAACCTCACTTTGCA+AGG - chr4_1:48741990-48742009 None:intergenic 35.0%
CTTGCAAAGTGAGGTTTATT+TGG + chr4_1:48741988-48742007 Msa0552270:intron 35.0%
GTGAAAAATGAGTGATAGTC+TGG - chr4_1:48742086-48742105 None:intergenic 35.0%
TTGCAGAAAGATAAACGTAC+AGG + chr4_1:48742120-48742139 Msa0552270:intron 35.0%
TGCAGAAAGATAAACGTACA+GGG + chr4_1:48742121-48742140 Msa0552270:intron 35.0%
GTACAGGGAAACCTAAAATA+TGG + chr4_1:48742136-48742155 Msa0552270:CDS 35.0%
AAAGAGACGAATGAACCAAA+GGG + chr4_1:48742171-48742190 Msa0552270:CDS 35.0%
! TATAGCGGAGTCAAAAAACA+AGG + chr4_1:48742290-48742309 Msa0552270:CDS 35.0%
CTGCTATTGCAGTATATGTT+TGG - chr4_1:48742320-48742339 None:intergenic 35.0%
CATATCACAGACCTTGTATT+CGG - chr4_1:48742474-48742493 None:intergenic 35.0%
!! CGAATGTGAACTTTGCTTTT+CGG + chr4_1:48742591-48742610 Msa0552270:three_prime_UTR 35.0%
!! GAATGTGAACTTTGCTTTTC+GGG + chr4_1:48742592-48742611 Msa0552270:three_prime_UTR 35.0%
!! AATGTGAACTTTGCTTTTCG+GGG + chr4_1:48742593-48742612 Msa0552270:three_prime_UTR 35.0%
ACAAAATCGTACATTGGACA+AGG - chr4_1:48742770-48742789 None:intergenic 35.0%
GTAACCCAATTGATGAAACT+GGG - chr4_1:48742936-48742955 None:intergenic 35.0%
AGTAACCCAATTGATGAAAC+TGG - chr4_1:48742937-48742956 None:intergenic 35.0%
CATACTCTTGTGAATGAACA+TGG + chr4_1:48743072-48743091 Msa0552270:three_prime_UTR 35.0%
TGGCCTTTCCAATTTACATA+AGG + chr4_1:48743345-48743364 Msa0552270:three_prime_UTR 35.0%
AAAGAGAAGTTCAGTAGATG+AGG - chr4_1:48743456-48743475 None:intergenic 35.0%
!! CCTAAATTTGCTACAACAAC+TGG - chr4_1:48743531-48743550 None:intergenic 35.0%
CCAGTTGTTGTAGCAAATTT+AGG + chr4_1:48743528-48743547 Msa0552270:three_prime_UTR 35.0%
! TGCAAGTTGGCTATATGATA+TGG + chr4_1:48743581-48743600 Msa0552270:three_prime_UTR 35.0%
! GCAAGTTGGCTATATGATAT+GGG + chr4_1:48743582-48743601 Msa0552270:three_prime_UTR 35.0%
! CAAGTTGGCTATATGATATG+GGG + chr4_1:48743583-48743602 Msa0552270:three_prime_UTR 35.0%
GCTCTGCTTAACTAAACATT+AGG + chr4_1:48743656-48743675 Msa0552270:intron 35.0%
!!! CTTCTTTTTTGACATAGGTG+TGG + chr4_1:48743801-48743820 Msa0552270:intron 35.0%
ATAGGTGTGGCAATATCAAT+TGG + chr4_1:48743814-48743833 Msa0552270:intron 35.0%
TAGGTGTGGCAATATCAATT+GGG + chr4_1:48743815-48743834 Msa0552270:intron 35.0%
ATTTGCAATACAAACAAGCC+TGG + chr4_1:48743858-48743877 Msa0552270:three_prime_UTR 35.0%
TTTGCAATACAAACAAGCCT+GGG + chr4_1:48743859-48743878 Msa0552270:three_prime_UTR 35.0%
AGTATCCTAGATATGGAATG+TGG + chr4_1:48744123-48744142 Msa0552270:intron 35.0%
ACAATCCACATTCCATATCT+AGG - chr4_1:48744131-48744150 None:intergenic 35.0%
AGAAGTTCAAAATAGCCACT+TGG - chr4_1:48744170-48744189 None:intergenic 35.0%
ATATGATGATCATTGTGAGC+AGG - chr4_1:48744328-48744347 None:intergenic 35.0%
! TTGTACCTTTTGTTCCTCTA+AGG + chr4_1:48744414-48744433 Msa0552270:intron 35.0%
ACAGAAACCAAGACAAAGAT+AGG - chr4_1:48744560-48744579 None:intergenic 35.0%
! TCATCTTTTATCCAAACCAC+AGG - chr4_1:48744589-48744608 None:intergenic 35.0%
CAATTCTTAAAGGTAGAGGA+CGG - chr4_1:48744803-48744822 None:intergenic 35.0%
AGCTCCAATGATAGAACAAA+TGG - chr4_1:48744906-48744925 None:intergenic 35.0%
CGATGTCATAAAGATGACAA+TGG - chr4_1:48745000-48745019 None:intergenic 35.0%
CATACAAGATAGATGCAATG+GGG - chr4_1:48745062-48745081 None:intergenic 35.0%
TCTATCTTGTATGATGAACC+TGG + chr4_1:48745069-48745088 Msa0552270:intron 35.0%
CTATCTTGTATGATGAACCT+GGG + chr4_1:48745070-48745089 Msa0552270:intron 35.0%
TATCTTGTATGATGAACCTG+GGG + chr4_1:48745071-48745090 Msa0552270:intron 35.0%
TCAATGATGAGATAGAGACA+TGG - chr4_1:48745274-48745293 None:intergenic 35.0%
TCCGAAATGTTGGAATTTCT+AGG + chr4_1:48745355-48745374 Msa0552270:intron 35.0%
TTACAAAGAGCTTGATGAAG+AGG + chr4_1:48745516-48745535 Msa0552270:three_prime_UTR 35.0%
! TTTTCTTACTGTCAGGATGA+TGG + chr4_1:48745636-48745655 Msa0552270:intron 35.0%
! TTTTGGCACGGAATTTCTTA+AGG - chr4_1:48745686-48745705 None:intergenic 35.0%
! AGTTTCAGATTGCTGTGTTT+TGG - chr4_1:48745703-48745722 None:intergenic 35.0%
GTTATCATTATGGCTATAGC+GGG + chr4_1:48745928-48745947 Msa0552270:intron 35.0%
TTGCAAAAAGAATGCCGAAA+AGG - chr4_1:48746017-48746036 None:intergenic 35.0%
! TATATTTGCTAGTTGCTTGC+CGG + chr4_1:48746114-48746133 Msa0552270:intron 35.0%
ATGAGCAAATTATGGCAACA+TGG - chr4_1:48746213-48746232 None:intergenic 35.0%
!! TGCCATAATTTGCTCATGTA+AGG + chr4_1:48746216-48746235 Msa0552270:intron 35.0%
! TTGATGATCACATATCAGAG+TGG - chr4_1:48746314-48746333 None:intergenic 35.0%
TGTTTATAATACCGATGGCA+GGG + chr4_1:48746378-48746397 Msa0552270:intron 35.0%
AAAAACACATAGGATCTGCT+TGG + chr4_1:48746634-48746653 Msa0552270:three_prime_UTR 35.0%
AAAACACATAGGATCTGCTT+GGG + chr4_1:48746635-48746654 Msa0552270:three_prime_UTR 35.0%
TTCTCATTTCGTTGGAAAAC+GGG + chr4_1:48746724-48746743 Msa0552270:three_prime_UTR 35.0%
CTCGTACAGTCTCACAATAT+TGG + chr4_1:48740736-48740755 Msa0552270:five_prime_UTR 40.0%
!! TGGTTACGGAGGCATAATTT+TGG + chr4_1:48740899-48740918 Msa0552270:five_prime_UTR 40.0%
AAGAAGAAATTAGCGAGGAG+GGG + chr4_1:48741002-48741021 Msa0552270:five_prime_UTR 40.0%
AATGGAAGGAAGAAACGAAG+AGG - chr4_1:48741157-48741176 None:intergenic 40.0%
GCGAACACTACATAACTGTT+TGG - chr4_1:48741556-48741575 None:intergenic 40.0%
CAATTGCAGATCACGGAAAA+TGG - chr4_1:48741636-48741655 None:intergenic 40.0%
AGAAGCAAGACACTTGACAT+CGG - chr4_1:48741665-48741684 None:intergenic 40.0%
TATGTCTGCAACTTGCCTTA+TGG + chr4_1:48741850-48741869 Msa0552270:CDS 40.0%
ATGTCTGCAACTTGCCTTAT+GGG + chr4_1:48741851-48741870 Msa0552270:CDS 40.0%
TGGGACCGATGATAATATGT+TGG + chr4_1:48741870-48741889 Msa0552270:CDS 40.0%
! TTTTCTGTCCTTGCAAAGTG+AGG + chr4_1:48741979-48741998 Msa0552270:intron 40.0%
CAAAGAGACGAATGAACCAA+AGG + chr4_1:48742170-48742189 Msa0552270:CDS 40.0%
AGATGCTACTGTGACATATG+AGG + chr4_1:48742194-48742213 Msa0552270:CDS 40.0%
ATATACTGCAATAGCAGACC+CGG + chr4_1:48742323-48742342 Msa0552270:CDS 40.0%
ACATCACTTTCAGTTTCCTC+TGG - chr4_1:48742372-48742391 None:intergenic 40.0%
GAAACTGAAAGTGATGTCGA+TGG + chr4_1:48742375-48742394 Msa0552270:CDS 40.0%
! AGTGATGTCGATGGTGTTAA+TGG + chr4_1:48742384-48742403 Msa0552270:CDS 40.0%
ATTGGATGTGTCCGAATACA+AGG + chr4_1:48742460-48742479 Msa0552270:CDS 40.0%
CAAGGTCTGTGATATGAGAT+TGG + chr4_1:48742478-48742497 Msa0552270:exon 40.0%
TCAGACAACGGAAAGAATGT+GGG - chr4_1:48742802-48742821 None:intergenic 40.0%
ATCAGACAACGGAAAGAATG+TGG - chr4_1:48742803-48742822 None:intergenic 40.0%
GTTGCCCAGTTTCATCAATT+GGG + chr4_1:48742929-48742948 Msa0552270:three_prime_UTR 40.0%
TATTATGTTGGACGTAGTGC+TGG + chr4_1:48742974-48742993 Msa0552270:three_prime_UTR 40.0%
TTGCAAAGTGCAAAATCAGG+AGG - chr4_1:48743139-48743158 None:intergenic 40.0%
ACGTTGCAAAGTGCAAAATC+AGG - chr4_1:48743142-48743161 None:intergenic 40.0%
! GATTTTGCACTTTGCAACGT+TGG + chr4_1:48743142-48743161 Msa0552270:three_prime_UTR 40.0%
TTGCTTGAGTGCAAATCTAG+TGG + chr4_1:48743325-48743344 Msa0552270:three_prime_UTR 40.0%
AAGTTCAGTAGATGAGGACA+AGG - chr4_1:48743450-48743469 None:intergenic 40.0%
! TCTGTCTCTTTTGTCCTTGT+GGG + chr4_1:48743478-48743497 Msa0552270:three_prime_UTR 40.0%
!! GTGGCAGTTGATTTTGCATT+TGG + chr4_1:48743503-48743522 Msa0552270:three_prime_UTR 40.0%
GCTATATGATATGGGGCTTA+TGG + chr4_1:48743590-48743609 Msa0552270:three_prime_UTR 40.0%
CTTAACTAAACATTAGGCCG+AGG + chr4_1:48743662-48743681 Msa0552270:intron 40.0%
TAAGTACGGTATAACAGCCT+CGG - chr4_1:48743682-48743701 None:intergenic 40.0%
TGGAATTGATCTGCATGATG+TGG + chr4_1:48743718-48743737 Msa0552270:intron 40.0%
GCAATATCAATTGGGCAAAG+CGG + chr4_1:48743823-48743842 Msa0552270:three_prime_UTR 40.0%
ACAAATTACAGCATTCGCCT+TGG - chr4_1:48744025-48744044 None:intergenic 40.0%
! TATGGAATGTGGATTGTCAG+CGG + chr4_1:48744134-48744153 Msa0552270:intron 40.0%
TGCCGCAAAATCACATACAT+CGG - chr4_1:48744394-48744413 None:intergenic 40.0%
!! AGCATTGATAAAGAGAGTGG+AGG - chr4_1:48744832-48744851 None:intergenic 40.0%
!! TGGAGCATTGATAAAGAGAG+TGG - chr4_1:48744835-48744854 None:intergenic 40.0%
CTCTTTATCAATGCTCCAAC+AGG + chr4_1:48744837-48744856 Msa0552270:intron 40.0%
ATATTGTGGAGAAGACCTGT+TGG - chr4_1:48744855-48744874 None:intergenic 40.0%
CCTAGCTTAGAGGTGAAAAT+AGG - chr4_1:48745124-48745143 None:intergenic 40.0%
! CCTATTTTCACCTCTAAGCT+AGG + chr4_1:48745121-48745140 Msa0552270:intron 40.0%
CCTAGCTTAGAGGTGAAAAT+AGG - chr4_1:48745124-48745143 None:intergenic 40.0%
! CCTATTTTCACCTCTAAGCT+AGG + chr4_1:48745121-48745140 Msa0552270:intron 40.0%
TTCCTCCAAATCCGAAATGT+TGG + chr4_1:48745345-48745364 Msa0552270:intron 40.0%
TTCCAACATTTCGGATTTGG+AGG - chr4_1:48745350-48745369 None:intergenic 40.0%
GGTGAGCTGTATGATGAATT+TGG + chr4_1:48745657-48745676 Msa0552270:three_prime_UTR 40.0%
AGTGTGATAGACAATGGGAA+GGG - chr4_1:48745867-48745886 None:intergenic 40.0%
AAGTGTGATAGACAATGGGA+AGG - chr4_1:48745868-48745887 None:intergenic 40.0%
! GGGAAAGTGTGATAGACAAT+GGG - chr4_1:48745872-48745891 None:intergenic 40.0%
AACAATGCTAGGGAACATGT+GGG - chr4_1:48745893-48745912 None:intergenic 40.0%
TAACAATGCTAGGGAACATG+TGG - chr4_1:48745894-48745913 None:intergenic 40.0%
! TTCGGCATTCTTTTTGCAAC+TGG + chr4_1:48746018-48746037 Msa0552270:intron 40.0%
CTGTTTATAATACCGATGGC+AGG + chr4_1:48746377-48746396 Msa0552270:intron 40.0%
ACAGAAAAAAGCAGAGACAG+AGG + chr4_1:48746416-48746435 Msa0552270:three_prime_UTR 40.0%
TTCTCTGCTCTCCATCATAA+CGG - chr4_1:48746457-48746476 None:intergenic 40.0%
! AGAAACAGAGAGCATAACGA+GGG + chr4_1:48746473-48746492 Msa0552270:three_prime_UTR 40.0%
TTGGAAATTGGCAGACATAG+TGG + chr4_1:48746527-48746546 Msa0552270:three_prime_UTR 40.0%
AAAATGTTAACCAGTGCCCC+TGG + chr4_1:48740866-48740885 Msa0552270:five_prime_UTR 45.0%
AGAAGAAATTAGCGAGGAGG+GGG + chr4_1:48741003-48741022 Msa0552270:five_prime_UTR 45.0%
!!! GAGCTCTGTGCTGGTTTTAA+CGG + chr4_1:48741755-48741774 Msa0552270:intron 45.0%
! TTTTCCAGGAATGCTTGCCA+TGG - chr4_1:48741806-48741825 None:intergenic 45.0%
! GTCGATGGTGTTAATGGAAG+AGG + chr4_1:48742390-48742409 Msa0552270:CDS 45.0%
AGAGGCAGAGGTCAAATTGA+TGG + chr4_1:48742408-48742427 Msa0552270:CDS 45.0%
! TTGATGGTTCCAGCAAACCA+TGG + chr4_1:48742424-48742443 Msa0552270:CDS 45.0%
AGCAAACCATGGCAACAAGA+GGG + chr4_1:48742435-48742454 Msa0552270:CDS 45.0%
ATTGGACAAGGCCAGTCATT+GGG - chr4_1:48742758-48742777 None:intergenic 45.0%
CAGACAACGGAAAGAATGTG+GGG - chr4_1:48742801-48742820 None:intergenic 45.0%
CGTTGCCCAGTTTCATCAAT+TGG + chr4_1:48742928-48742947 Msa0552270:three_prime_UTR 45.0%
ATGCAAAAGGGGACGCAATT+TGG - chr4_1:48743213-48743232 None:intergenic 45.0%
! AATTGCGTCCCCTTTTGCAT+TGG + chr4_1:48743213-48743232 Msa0552270:three_prime_UTR 45.0%
! ATTGCGTCCCCTTTTGCATT+GGG + chr4_1:48743214-48743233 Msa0552270:three_prime_UTR 45.0%
GGAAGCAATCATCATGTGAG+AGG + chr4_1:48743302-48743321 Msa0552270:three_prime_UTR 45.0%
!! CTTTGTTGTTAACCTCTCCC+CGG + chr4_1:48743416-48743435 Msa0552270:three_prime_UTR 45.0%
!! TTTGTTGTTAACCTCTCCCC+GGG + chr4_1:48743417-48743436 Msa0552270:three_prime_UTR 45.0%
CACAAGGACAAAAGAGACAG+AGG - chr4_1:48743479-48743498 None:intergenic 45.0%
! CTCTGTCTCTTTTGTCCTTG+TGG + chr4_1:48743477-48743496 Msa0552270:three_prime_UTR 45.0%
!! TCTTTTGTCCTTGTGGGTTG+TGG + chr4_1:48743484-48743503 Msa0552270:three_prime_UTR 45.0%
ACTTGCACTCCAAGTTCCAA+CGG - chr4_1:48743568-48743587 None:intergenic 45.0%
TTGGAACTTGGAGTGCAAGT+TGG + chr4_1:48743568-48743587 Msa0552270:three_prime_UTR 45.0%
ATTAGTGACACCTCTGATGC+AGG + chr4_1:48743942-48743961 Msa0552270:intron 45.0%
TGTAGTTTCACCTGCATCAG+AGG - chr4_1:48743955-48743974 None:intergenic 45.0%
! CCATATCTAGGATACTGACC+CGG - chr4_1:48744119-48744138 None:intergenic 45.0%
CATAAATGGGACTCTCCACT+TGG - chr4_1:48744253-48744272 None:intergenic 45.0%
CAAGTGGAGAGTCCCATTTA+TGG + chr4_1:48744251-48744270 Msa0552270:intron 45.0%
! CGCCGATGTATGTGATTTTG+CGG + chr4_1:48744389-48744408 Msa0552270:intron 45.0%
GGTTTGGCCTATCTTTGTCT+TGG + chr4_1:48744550-48744569 Msa0552270:intron 45.0%
TGGTTTCTGTTGAAGTCCTG+TGG + chr4_1:48744570-48744589 Msa0552270:intron 45.0%
TCTGTTGAAGTCCTGTGGTT+TGG + chr4_1:48744575-48744594 Msa0552270:intron 45.0%
GATGCAATGGGGATGAATAC+AGG - chr4_1:48745051-48745070 None:intergenic 45.0%
TCGAAGAAACTAAACGTCGC+AGG + chr4_1:48745542-48745561 Msa0552270:three_prime_UTR 45.0%
AAGAAACTAAACGTCGCAGG+CGG + chr4_1:48745545-48745564 Msa0552270:three_prime_UTR 45.0%
!!! CAGATTGCTGTGTTTTGGCA+CGG - chr4_1:48745698-48745717 None:intergenic 45.0%
AAACTGCACGAGTGCTTTCA+GGG + chr4_1:48745718-48745737 Msa0552270:three_prime_UTR 45.0%
AGCTAATGCTGCAACTTTGC+AGG + chr4_1:48745821-48745840 Msa0552270:intron 45.0%
TGTGATAGACAATGGGAAGG+GGG - chr4_1:48745865-48745884 None:intergenic 45.0%
GTGTGATAGACAATGGGAAG+GGG - chr4_1:48745866-48745885 None:intergenic 45.0%
! GGGGAAAGTGTGATAGACAA+TGG - chr4_1:48745873-48745892 None:intergenic 45.0%
ACAATGCTAGGGAACATGTG+GGG - chr4_1:48745892-48745911 None:intergenic 45.0%
AGACAGAGGAAGAGAGTCAA+GGG + chr4_1:48746430-48746449 Msa0552270:three_prime_UTR 45.0%
! GAGAAACAGAGAGCATAACG+AGG + chr4_1:48746472-48746491 Msa0552270:three_prime_UTR 45.0%
! GAAACAGAGAGCATAACGAG+GGG + chr4_1:48746474-48746493 Msa0552270:three_prime_UTR 45.0%
!! TAAAAAATAAATCAAAATTA+AGG - chr4_1:48744072-48744091 None:intergenic 5.0%
!!! ATTTTGATTTATTTTTTAAT+TGG + chr4_1:48744074-48744093 Msa0552270:intron 5.0%
GTGATTTATCGCTCCGTCTG+CGG - chr4_1:48741032-48741051 None:intergenic 50.0%
! GTTTTCTCAGAGCTCTGTGC+TGG + chr4_1:48741746-48741765 Msa0552270:intron 50.0%
GATTCCATGGCAAGCATTCC+TGG + chr4_1:48741799-48741818 Msa0552270:exon 50.0%
GTCACAGTAGCATCTCCCTT+TGG - chr4_1:48742189-48742208 None:intergenic 50.0%
AAACCACTCAACAGCAGCCA+CGG - chr4_1:48742232-48742251 None:intergenic 50.0%
ACGTCAGTACCAGCAACAAC+CGG - chr4_1:48742345-48742364 None:intergenic 50.0%
!! GTTGTTGCTGGTACTGACGT+CGG + chr4_1:48742345-48742364 Msa0552270:CDS 50.0%
GGTGTTAATGGAAGAGGCAG+AGG + chr4_1:48742396-48742415 Msa0552270:CDS 50.0%
! CTCTTGTTGCCATGGTTTGC+TGG - chr4_1:48742436-48742455 None:intergenic 50.0%
CAGCAAACCATGGCAACAAG+AGG + chr4_1:48742434-48742453 Msa0552270:CDS 50.0%
GGCTATTTGGTCCCAATGAC+TGG + chr4_1:48742744-48742763 Msa0552270:three_prime_UTR 50.0%
CATTGGACAAGGCCAGTCAT+TGG - chr4_1:48742759-48742778 None:intergenic 50.0%
ATCAACTGCCACAACCCACA+AGG - chr4_1:48743495-48743514 None:intergenic 50.0%
GTTCCAACGGTGCACAATCT+TGG - chr4_1:48743555-48743574 None:intergenic 50.0%
GATTGTGCACCGTTGGAACT+TGG + chr4_1:48743556-48743575 Msa0552270:three_prime_UTR 50.0%
CCGGGTCAGTATCCTAGATA+TGG + chr4_1:48744116-48744135 Msa0552270:intron 50.0%
! GAATGTGGATTGTCAGCGGT+AGG + chr4_1:48744138-48744157 Msa0552270:intron 50.0%
TGGATTGTCAGCGGTAGGAT+AGG + chr4_1:48744143-48744162 Msa0552270:intron 50.0%
AACCTGGGGTGCATAAACTC+TGG + chr4_1:48745085-48745104 Msa0552270:intron 50.0%
TACCAGAGTTTATGCACCCC+AGG - chr4_1:48745090-48745109 None:intergenic 50.0%
GCGCACAAAACCTAGCTTAG+AGG - chr4_1:48745134-48745153 None:intergenic 50.0%
GCGCACAAAACCTAGCTTAG+AGG - chr4_1:48745134-48745153 None:intergenic 50.0%
GAAACTGCACGAGTGCTTTC+AGG + chr4_1:48745717-48745736 Msa0552270:three_prime_UTR 50.0%
AGGACCATCAAACTCGAGTC+CGG - chr4_1:48746136-48746155 None:intergenic 50.0%
TCTCTGTCAATCCCTGCCAT+CGG - chr4_1:48746392-48746411 None:intergenic 50.0%
GAGACAGAGGAAGAGAGTCA+AGG + chr4_1:48746429-48746448 Msa0552270:three_prime_UTR 50.0%
GAGTCAAGGGACCGTTATGA+TGG + chr4_1:48746443-48746462 Msa0552270:three_prime_UTR 50.0%
TAACCATTGCCCTGCTCCAG+GGG - chr4_1:48740885-48740904 None:intergenic 55.0%
GTAACCATTGCCCTGCTCCA+GGG - chr4_1:48740886-48740905 None:intergenic 55.0%
CTGGAGCAGGGCAATGGTTA+CGG + chr4_1:48740885-48740904 Msa0552270:five_prime_UTR 55.0%
GTCACGCGCTTCTTCGATTC+TGG + chr4_1:48741116-48741135 Msa0552270:five_prime_UTR 55.0%
ATAGCAGACCCGGTTGTTGC+TGG + chr4_1:48742333-48742352 Msa0552270:CDS 55.0%
CGTCAGTACCAGCAACAACC+GGG - chr4_1:48742344-48742363 None:intergenic 55.0%
CAATCGCCCTCTTGTTGCCA+TGG - chr4_1:48742444-48742463 None:intergenic 55.0%
CATGGCAACAAGAGGGCGAT+TGG + chr4_1:48742442-48742461 Msa0552270:CDS 55.0%
! GACGTTCTGGGCAAGATGCA+GGG + chr4_1:48742690-48742709 Msa0552270:three_prime_UTR 55.0%
! ACGTTCTGGGCAAGATGCAG+GGG + chr4_1:48742691-48742710 Msa0552270:three_prime_UTR 55.0%
GGTGCAACTGCAGGGCTATT+TGG + chr4_1:48742731-48742750 Msa0552270:three_prime_UTR 55.0%
TGAGGACAAGGACCAGAACC+CGG - chr4_1:48743438-48743457 None:intergenic 55.0%
GGACCAAGATTGTGCACCGT+TGG + chr4_1:48743549-48743568 Msa0552270:three_prime_UTR 55.0%
AAACAAGCCTGGGCACAACG+AGG + chr4_1:48743869-48743888 Msa0552270:three_prime_UTR 55.0%
AACAAGCCTGGGCACAACGA+GGG + chr4_1:48743870-48743889 Msa0552270:three_prime_UTR 55.0%
AGCGGTAGGATAGGACCAAG+TGG + chr4_1:48744152-48744171 Msa0552270:intron 55.0%
TTAAACAGAGGAGGGCGAGC+TGG + chr4_1:48745490-48745509 Msa0552270:intron 55.0%
GGTTGGGAGGTTGAGGATCT+AGG + chr4_1:48745747-48745766 Msa0552270:three_prime_UTR 55.0%
CTTGCCGGACTCGAGTTTGA+TGG + chr4_1:48746129-48746148 Msa0552270:intron 55.0%
! ACAGAGAGCATAACGAGGGG+AGG + chr4_1:48746477-48746496 Msa0552270:three_prime_UTR 55.0%
TTAACCAGTGCCCCTGGAGC+AGG + chr4_1:48740872-48740891 Msa0552270:five_prime_UTR 60.0%
TAACCAGTGCCCCTGGAGCA+GGG + chr4_1:48740873-48740892 Msa0552270:five_prime_UTR 60.0%
CGTAACCATTGCCCTGCTCC+AGG - chr4_1:48740887-48740906 None:intergenic 60.0%
GAGCAGGGCAATGGTTACGG+AGG + chr4_1:48740888-48740907 Msa0552270:five_prime_UTR 60.0%
TGAGGATCCACATGCTGCCG+TGG + chr4_1:48742212-48742231 Msa0552270:CDS 60.0%
!! TGGTACTGACGTCGGACCAG+AGG + chr4_1:48742353-48742372 Msa0552270:CDS 60.0%
!! CAACGCCAGAAGCACCAGCA+GGG - chr4_1:48742646-48742665 None:intergenic 60.0%
! GGACGTTCTGGGCAAGATGC+AGG + chr4_1:48742689-48742708 Msa0552270:three_prime_UTR 60.0%
! CGTTCTGGGCAAGATGCAGG+GGG + chr4_1:48742692-48742711 Msa0552270:three_prime_UTR 60.0%
! GGGCAAGATGCAGGGGGTAT+TGG + chr4_1:48742698-48742717 Msa0552270:three_prime_UTR 60.0%
CTGCAGTTGCACCAGCTGGA+CGG - chr4_1:48742724-48742743 None:intergenic 60.0%
GTCCAGCTGGTGCAACTGCA+GGG + chr4_1:48742723-48742742 Msa0552270:three_prime_UTR 60.0%
GTTAACCTCTCCCCGGGTTC+TGG + chr4_1:48743423-48743442 Msa0552270:three_prime_UTR 60.0%
AGGACAAGGACCAGAACCCG+GGG - chr4_1:48743436-48743455 None:intergenic 60.0%
GAGGACAAGGACCAGAACCC+GGG - chr4_1:48743437-48743456 None:intergenic 60.0%
GGCACAACGAGGGTGGTGTA+AGG + chr4_1:48743880-48743899 Msa0552270:three_prime_UTR 60.0%
! TGCTTTCAGGGCGTGCTGGT+TGG + chr4_1:48745730-48745749 Msa0552270:three_prime_UTR 60.0%
!! GCTTTCAGGGCGTGCTGGTT+GGG + chr4_1:48745731-48745750 Msa0552270:three_prime_UTR 60.0%
GAGGAGGGGGATACCGCAGA+CGG + chr4_1:48741016-48741035 Msa0552270:five_prime_UTR 65.0%
ACAGCAGCCACGGCAGCATG+TGG - chr4_1:48742222-48742241 None:intergenic 65.0%
CTGCCGTGGCTGCTGTTGAG+TGG + chr4_1:48742226-48742245 Msa0552270:CDS 65.0%
CGGGGTGCGTGTAATCGCTG+TGG + chr4_1:48742611-48742630 Msa0552270:three_prime_UTR 65.0%
! TGTGGAAGTGCACGCCCTGC+TGG + chr4_1:48742629-48742648 Msa0552270:three_prime_UTR 65.0%
!! GCAACGCCAGAAGCACCAGC+AGG - chr4_1:48742647-48742666 None:intergenic 65.0%
GCTGGTGCTTCTGGCGTTGC+AGG + chr4_1:48742647-48742666 Msa0552270:three_prime_UTR 65.0%
GGTGCTTCTGGCGTTGCAGG+AGG + chr4_1:48742650-48742669 Msa0552270:three_prime_UTR 65.0%
GCTTCTGGCGTTGCAGGAGG+AGG + chr4_1:48742653-48742672 Msa0552270:three_prime_UTR 65.0%
TCTGGCGTTGCAGGAGGAGG+TGG + chr4_1:48742656-48742675 Msa0552270:three_prime_UTR 65.0%
CGTCCAGCTGGTGCAACTGC+AGG + chr4_1:48742722-48742741 Msa0552270:three_prime_UTR 65.0%
AGCCCTGCAGTTGCACCAGC+TGG - chr4_1:48742728-48742747 None:intergenic 65.0%
AAGGACCAGAACCCGGGGAG+AGG - chr4_1:48743431-48743450 None:intergenic 65.0%
AAGCCTGGGCACAACGAGGG+TGG + chr4_1:48743873-48743892 Msa0552270:three_prime_UTR 65.0%
ACACCACCCTCGTTGTGCCC+AGG - chr4_1:48743879-48743898 None:intergenic 65.0%
AACAGAGGAGGGCGAGCTGG+AGG + chr4_1:48745493-48745512 Msa0552270:intron 65.0%
CGAGTGCTTTCAGGGCGTGC+TGG + chr4_1:48745726-48745745 Msa0552270:three_prime_UTR 65.0%
!! TTCAGGGCGTGCTGGTTGGG+AGG + chr4_1:48745734-48745753 Msa0552270:three_prime_UTR 65.0%
!! GCGTGCTGGTTGGGAGGTTG+AGG + chr4_1:48745740-48745759 Msa0552270:three_prime_UTR 65.0%
! TTGCCCTGCTCCAGGGGCAC+TGG - chr4_1:48740879-48740898 None:intergenic 70.0%
GTGCCCCTGGAGCAGGGCAA+TGG + chr4_1:48740879-48740898 Msa0552270:five_prime_UTR 70.0%
GCACGCCCTGCTGGTGCTTC+TGG + chr4_1:48742638-48742657 Msa0552270:three_prime_UTR 70.0%
GTTGCAGGAGGAGGTGGCCG+TGG + chr4_1:48742662-48742681 Msa0552270:three_prime_UTR 70.0%
AGGAGGAGGTGGCCGTGGCA+GGG + chr4_1:48742667-48742686 Msa0552270:three_prime_UTR 70.0%
GCCGTGGCAGGGGACGTTCT+GGG + chr4_1:48742678-48742697 Msa0552270:three_prime_UTR 70.0%
GCCCAGAACGTCCCCTGCCA+CGG - chr4_1:48742682-48742701 None:intergenic 70.0%
!! GGGGGTATTGGCCGTCCAGC+TGG + chr4_1:48742710-48742729 Msa0552270:three_prime_UTR 70.0%
CAGGAGGAGGTGGCCGTGGC+AGG + chr4_1:48742666-48742685 Msa0552270:three_prime_UTR 75.0%
GGAGGAGGTGGCCGTGGCAG+GGG + chr4_1:48742668-48742687 Msa0552270:three_prime_UTR 75.0%
GGCCGTGGCAGGGGACGTTC+TGG + chr4_1:48742677-48742696 Msa0552270:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 48740649 48746830 48740649 ID=Msa0552270;Name=Msa0552270
chr4_1 mRNA 48740649 48746830 48740649 ID=Msa0552270-mRNA-1;Parent=Msa0552270;Name=Msa0552270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=538|1|1|1|0.57|0.5|8|1744|162
chr4_1 exon 48740649 48741137 48740649 ID=Msa0552270-mRNA-1:exon:13405;Parent=Msa0552270-mRNA-1
chr4_1 exon 48741756 48741924 48741756 ID=Msa0552270-mRNA-1:exon:13406;Parent=Msa0552270-mRNA-1
chr4_1 exon 48742126 48742499 48742126 ID=Msa0552270-mRNA-1:exon:13407;Parent=Msa0552270-mRNA-1
chr4_1 exon 48742586 48743611 48742586 ID=Msa0552270-mRNA-1:exon:13408;Parent=Msa0552270-mRNA-1
chr4_1 exon 48743818 48743901 48743818 ID=Msa0552270-mRNA-1:exon:13409;Parent=Msa0552270-mRNA-1
chr4_1 exon 48745498 48745576 48745498 ID=Msa0552270-mRNA-1:exon:13410;Parent=Msa0552270-mRNA-1
chr4_1 exon 48745651 48745768 48745651 ID=Msa0552270-mRNA-1:exon:13411;Parent=Msa0552270-mRNA-1
chr4_1 exon 48746399 48746830 48746399 ID=Msa0552270-mRNA-1:exon:13412;Parent=Msa0552270-mRNA-1
chr4_1 five_prime_UTR 48740649 48741137 48740649 ID=Msa0552270-mRNA-1:five_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 five_prime_UTR 48741756 48741804 48741756 ID=Msa0552270-mRNA-1:five_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 CDS 48741805 48741924 48741805 ID=Msa0552270-mRNA-1:cds;Parent=Msa0552270-mRNA-1
chr4_1 CDS 48742126 48742494 48742126 ID=Msa0552270-mRNA-1:cds;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48742495 48742499 48742495 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48742586 48743611 48742586 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48743818 48743901 48743818 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48745498 48745576 48745498 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48745651 48745768 48745651 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
chr4_1 three_prime_UTR 48746399 48746830 48746399 ID=Msa0552270-mRNA-1:three_prime_utr;Parent=Msa0552270-mRNA-1
Gene Sequence

>Msa0552270

ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTCTGCAACTTGCCTTATGGGACCGATGATAATATGTTGGCTGAATATTTTGGAACCATTGGAGTTATAAAGAAAGATAAACGTACAGGGAAACCTAAAATATGGTTATATCATGACAAAGAGACGAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGACCCGGTTGTTGCTGGTACTGACGTCGGACCAGAGGAAACTGAAAGTGATGTCGATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGGTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGGTCTGTGATATGA
Protein sequence

>Msa0552270

MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGKPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIADPVVAGTDVGPEETESDVDGVNGRGRGQIDGSSKPWQQEGDWMCPNTRSVI*