AlfalfaGEDB | Msa0552490

M. sativa cultivar zhongmu-4 / Msa0552490

KEGG: K14651
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0552490	KEH30554.1	98.750	320	4	0	1	320	1	320	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0552490	sp\|Q9AST1\|TAF15_ARATH	72.930	314	72	5	10	320	5	308	4.87e-137	399

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0552490	A0A072ULB1	98.750	320	4	0	1	320	1	320	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0551720	Msa0552490	0.805436	1.335968e-49	-8.615850e-47
Msa0552270	Msa0552490	0.879798	9.282269e-70	-8.615850e-47
Msa0552310	Msa0552490	0.936497	1.580126e-97	-8.615850e-47
Msa0552350	Msa0552490	0.936751	1.051346e-97	-8.615850e-47
Msa0552400	Msa0552490	0.937048	6.520589e-98	-8.615850e-47
Msa0552450	Msa0552490	0.935348	9.767476e-97	-8.615850e-47
Msa0552490	Msa0876200	0.809720	1.645811e-50	-8.615850e-47
Msa0552490	Msa0902750	0.811765	5.944911e-51	-8.615850e-47
Msa0552490	Msa1259240	0.801763	7.723140e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0552490	MtrunA17_Chr4g0037701	98.750	320	4	0	1	320	1	320	0.0	580

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0552490	AT1G50300.1	72.930	314	72	5	10	320	5	308	4.95e-138	399
Msa0552490	AT1G50300.2	69.298	228	57	5	96	320	1	218	1.50e-76	239

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Find 163 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAAATTAGCGAGG+AGG	0.662730	4_1:+49177984	Msa0552490:five_prime_UTR
AAAATGTTAACCAGTGCCCC+TGG	0.562473	4_1:+49177850	Msa0552490:five_prime_UTR
AAACAAGCCTGGGCACAACG+AGG	0.703032	4_1:+49180860	Msa0552490:CDS
AAACCACTCAACAGCAGCCA+CGG	0.598977	4_1:-49179213	None:intergenic
AAAGAAGAAATTAGCGAGGA+GGG	0.577000	4_1:+49177985	Msa0552490:five_prime_UTR
AAAGAGACGAATGAACCAAA+GGG	0.558771	4_1:+49179155	Msa0552490:CDS
AAAGCAGTCGAAATAGAGAG+AGG	0.640490	4_1:+49183801	Msa0552490:CDS
AACAAGCCTGGGCACAACGA+GGG	0.649708	4_1:+49180861	Msa0552490:CDS
AACAGAGGAGGGCGAGCTGG+AGG	0.593908	4_1:+49182484	Msa0552490:intron
AACCTCCCAACCAGCACGCC+CGG	0.437554	4_1:-49182736	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGGAACTCAATTATTATAC+AGG	-	chr4_1:49178166-49178185	None:intergenic	30.0%
TGCAAATTATGCAATCGAAA+AGG	-	chr4_1:49178241-49178260	None:intergenic	30.0%
ATCCATAGGCTTATTCAATT+AGG	+	chr4_1:49178446-49178465	Msa0552490:intron	30.0%
AACCTAATTGAATAAGCCTA+TGG	-	chr4_1:49178451-49178470	None:intergenic	30.0%
TTCATGATATTGAGATTCCA+TGG	+	chr4_1:49178770-49178789	Msa0552490:exon	30.0%
TTCAGCCAACATATTATCAT+CGG	-	chr4_1:49178862-49178881	None:intergenic	30.0%
TTGCAAAGTGAGGTTTATTT+GGG	+	chr4_1:49178973-49178992	Msa0552490:intron	30.0%
GATAAACAGAACCACATAAA+TGG	-	chr4_1:49179030-49179049	None:intergenic	30.0%
AATGTGACAAAATCGTACAT+TGG	-	chr4_1:49179760-49179779	None:intergenic	30.0%
ATGAAATTATAGATTGGGTC+GGG	-	chr4_1:49180233-49180252	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	49177633	49184239	49177633	ID=Msa0552490;Name=Msa0552490
chr4_1	mRNA	49177633	49184239	49177633	ID=Msa0552490-mRNA-1;Parent=Msa0552490;Name=Msa0552490-mRNA-1;_AED=0.23;_eAED=0.23;_QI=538\|0.85\|0.87\|1\|0.71\|0.62\|8\|325\|392
chr4_1	exon	49177633	49178121	49177633	ID=Msa0552490-mRNA-1:exon:13627;Parent=Msa0552490-mRNA-1
chr4_1	exon	49178740	49178908	49178740	ID=Msa0552490-mRNA-1:exon:13628;Parent=Msa0552490-mRNA-1
chr4_1	exon	49179110	49179465	49179110	ID=Msa0552490-mRNA-1:exon:13629;Parent=Msa0552490-mRNA-1
chr4_1	exon	49179570	49179761	49179570	ID=Msa0552490-mRNA-1:exon:13630;Parent=Msa0552490-mRNA-1
chr4_1	exon	49180809	49180892	49180809	ID=Msa0552490-mRNA-1:exon:13631;Parent=Msa0552490-mRNA-1
chr4_1	exon	49182489	49182567	49182489	ID=Msa0552490-mRNA-1:exon:13632;Parent=Msa0552490-mRNA-1
chr4_1	exon	49182642	49182773	49182642	ID=Msa0552490-mRNA-1:exon:13633;Parent=Msa0552490-mRNA-1
chr4_1	exon	49183699	49184239	49183699	ID=Msa0552490-mRNA-1:exon:13634;Parent=Msa0552490-mRNA-1
chr4_1	five_prime_UTR	49177633	49178121	49177633	ID=Msa0552490-mRNA-1:five_prime_utr;Parent=Msa0552490-mRNA-1
chr4_1	five_prime_UTR	49178740	49178788	49178740	ID=Msa0552490-mRNA-1:five_prime_utr;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49178789	49178908	49178789	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49179110	49179465	49179110	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49179570	49179761	49179570	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49180809	49180892	49180809	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49182489	49182567	49182489	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49182642	49182773	49182642	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	CDS	49183699	49183914	49183699	ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1	three_prime_UTR	49183915	49184239	49183915	ID=Msa0552490-mRNA-1:three_prime_utr;Parent=Msa0552490-mRNA-1

Gene Sequence

>Msa0552490

ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTCTGCAACTTGCCTTATGGGACCGATGATAATATGTTGGCTGAATATTTTGGAACCATTGGAGTTATAAAGAAAGATAAACGTACAGGGAAACCTAAAATATGGTTATATCATGACAAAGAGACGAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGACCCGGTTGTTGCTGGTACTGACGTCGGACCAGAGGAAACTGAAAGTGATGTCGATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGGTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCGAATGTGAACTTTGCTTTTCGGGGTGCGTGTAATCGCTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGACGTTCTGGGCAAGATGCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGGCTATTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAACAAGCCTGGGCACAACGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATCGAAGAAACTAAACGTCGCAGGCGGCAAGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAACTGCACGAGTGCTTCCTGGTTCCGGGCGTGCTGGTTGGGAGGTTGAGGATCTAGGTAATGGATTGACAGAGATGCTACAGAAAAAAGCAGAGACAGAGGAAGAGAGTCAAGGGACCGTTATGATGGAGAGCAGAGAAACAGAGAGCATAACGAGGAGAGGCAAAGCAGTCGAAATAGAGAGAGGGACAGGGGAAGAGATTGAGACAGGGATTATGGACAGGAACGGGACCGAAGTAGACACCGATATTAAAAATAGCAGTAGAAGTGCATTCTGA

Protein sequence

>Msa0552490

MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGKPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIADPVVAGTDVGPEETESDVDGVNGRGRGQIDGSSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDAGGIGRPAGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSETARVLPGSGRAGWEVEDLGNGLTEMLQKKAETEEESQGTVMMESRETESITRRGKAVEIERGTGEEIETGIMDRNGTEVDTDIKNSSRSAF*