AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552490 MtrunA17_Chr4g0037701 98.750 320 4 0 1 320 1 320 0.0 580
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552490 AT1G50300.1 72.930 314 72 5 10 320 5 308 4.95e-138 399
Msa0552490 AT1G50300.2 69.298 228 57 5 96 320 1 218 1.50e-76 239

Find 163 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTAAATCCTTAAAT+TGG 0.134015 4_1:+49183965 Msa0552490:three_prime_UTR
GGAAAATTTGCTCCTTCTAA+TGG 0.205983 4_1:+49178804 Msa0552490:CDS
GGCCGTGGCAGGGGACGTTC+TGG 0.214033 4_1:+49179661 Msa0552490:CDS
GTCACGCGCTTCTTCGATTC+TGG 0.214137 4_1:+49178100 Msa0552490:five_prime_UTR
AATATGTTGGCTGAATATTT+TGG 0.237030 4_1:+49178867 Msa0552490:CDS
GCTGGTGCTTCTGGCGTTGC+AGG 0.246144 4_1:+49179631 Msa0552490:CDS
GCACGCCCTGCTGGTGCTTC+TGG 0.253618 4_1:+49179622 Msa0552490:CDS
CTCTTGTTGCCATGGTTTGC+TGG 0.262191 4_1:-49179417 None:intergenic
GGATATCAATCCCCAATTTA+AGG 0.271618 4_1:-49183977 None:intergenic
CAGGAGGAGGTGGCCGTGGC+AGG 0.278126 4_1:+49179650 Msa0552490:CDS
GCACGAGTGCTTCCTGGTTC+CGG 0.280399 4_1:+49182717 Msa0552490:CDS
TTGAATTAAATCCTTAAATT+GGG 0.283171 4_1:+49183966 Msa0552490:three_prime_UTR
GGTGCAACTGCAGGGCTATT+TGG 0.284772 4_1:+49179715 Msa0552490:CDS
CACGAGTGCTTCCTGGTTCC+GGG 0.286661 4_1:+49182718 Msa0552490:CDS
TGGTTCCGGGCGTGCTGGTT+GGG 0.293950 4_1:+49182731 Msa0552490:CDS
AGAGATTGAGACAGGGATTA+TGG 0.296280 4_1:+49183833 Msa0552490:CDS
TGGTTACAGAGGCATAATTT+TGG 0.303753 4_1:+49177883 Msa0552490:five_prime_UTR
GATTCCATGGCAAGCATTCC+TGG 0.304742 4_1:+49178783 Msa0552490:exon
TTTAAGAAATGATTAAATAA+TGG 0.305688 4_1:+49177827 Msa0552490:five_prime_UTR
ATGTCTGCAACTTGCCTTAT+GGG 0.313152 4_1:+49178835 Msa0552490:CDS
TGGAACCATTGGAGTTATAA+AGG 0.318896 4_1:+49178887 Msa0552490:CDS
GGTGAGCTGTATGATGAATT+TGG 0.319502 4_1:+49182648 Msa0552490:CDS
TATGTCTGCAACTTGCCTTA+TGG 0.328564 4_1:+49178834 Msa0552490:CDS
AGTGATGTCGATGGTGTTAA+TGG 0.330703 4_1:+49179368 Msa0552490:CDS
CTGGTTCCGGGCGTGCTGGT+TGG 0.338426 4_1:+49182730 Msa0552490:CDS
TGTAACAACACAAATATCTT+AGG 0.340119 4_1:-49184034 None:intergenic
GAAAATTTGCTCCTTCTAAT+GGG 0.344168 4_1:+49178805 Msa0552490:CDS
TGTGGAAGTGCACGCCCTGC+TGG 0.347172 4_1:+49179613 Msa0552490:CDS
TAAACGGTATGCTAAGAAAA+TGG 0.352458 4_1:+49184191 Msa0552490:three_prime_UTR
CGTCCAGCTGGTGCAACTGC+AGG 0.354707 4_1:+49179706 Msa0552490:CDS
AGTTTCAGATTGCTGTGTTT+TGG 0.356059 4_1:-49182694 None:intergenic
GTACAGGGAAACCTAAAATA+TGG 0.363199 4_1:+49179120 Msa0552490:CDS
TGTAACCATTGCCCTGCTCC+AGG 0.363402 4_1:-49177868 None:intergenic
CTGCTATTGCAGTATATGTT+TGG 0.371572 4_1:-49179301 None:intergenic
CCATGCATTCATCGCATTGC+AGG 0.374970 4_1:-49183998 None:intergenic
GCATTCTGATGTCTTGACTA+TGG 0.375960 4_1:+49183906 Msa0552490:exon
GAAACTGCACGAGTGCTTCC+TGG 0.382916 4_1:+49182711 Msa0552490:CDS
GGCTATTTGGTCCCAATGAC+TGG 0.387107 4_1:+49179728 Msa0552490:CDS
GGACGTTCTGGGCAAGATGC+AGG 0.393484 4_1:+49179673 Msa0552490:CDS
GGAGGAGGTGGCCGTGGCAG+GGG 0.394233 4_1:+49179652 Msa0552490:CDS
TTAACCAGTGCCCCTGGAGC+AGG 0.412858 4_1:+49177856 Msa0552490:five_prime_UTR
TGGCACGGAATTTCTTCTTA+AGG 0.415207 4_1:-49182674 None:intergenic
ATAGGTGTGGCAATATCAAT+TGG 0.418424 4_1:+49180805 Msa0552490:intron
GTCGAAATAGAGAGAGGGAC+AGG 0.428254 4_1:+49183807 Msa0552490:CDS
GGTTGGGAGGTTGAGGATCT+AGG 0.428724 4_1:+49182747 Msa0552490:CDS
ACGTCAGTACCAGCAACAAC+CGG 0.429856 4_1:-49179326 None:intergenic
CTTCCTGGTTCCGGGCGTGC+TGG 0.431568 4_1:+49182726 Msa0552490:CDS
TTGCCCTGCTCCAGGGGCAC+TGG 0.431857 4_1:-49177860 None:intergenic
GCCGTGGCAGGGGACGTTCT+GGG 0.436637 4_1:+49179662 Msa0552490:CDS
CAACCAGCACGCCCGGAACC+AGG 0.437128 4_1:-49182729 None:intergenic
AACCTCCCAACCAGCACGCC+CGG 0.437554 4_1:-49182736 None:intergenic
CATATCACAGACCTTGTATT+CGG 0.440223 4_1:-49179455 None:intergenic
AGGAGGAGGTGGCCGTGGCA+GGG 0.441158 4_1:+49179651 Msa0552490:CDS
ATAGCAGACCCGGTTGTTGC+TGG 0.443186 4_1:+49179317 Msa0552490:CDS
CAATCGCCCTCTTGTTGCCA+TGG 0.443269 4_1:-49179425 None:intergenic
ACGTTCTGGGCAAGATGCAG+GGG 0.444833 4_1:+49179675 Msa0552490:CDS
GCGTGCTGGTTGGGAGGTTG+AGG 0.447379 4_1:+49182740 Msa0552490:CDS
ACATCACTTTCAGTTTCCTC+TGG 0.451741 4_1:-49179353 None:intergenic
GCAACGCCAGAAGCACCAGC+AGG 0.461187 4_1:-49179628 None:intergenic
GCTTCTGGCGTTGCAGGAGG+AGG 0.468468 4_1:+49179637 Msa0552490:CDS
ACTGAACTTAGTTTGTTGTC+TGG 0.468595 4_1:+49184106 Msa0552490:three_prime_UTR
AGCCCTGCAGTTGCACCAGC+TGG 0.469244 4_1:-49179709 None:intergenic
GACAAAAGACCACAGGTAAA+CGG 0.469516 4_1:+49184175 Msa0552490:three_prime_UTR
GTAACCATTGCCCTGCTCCA+GGG 0.472090 4_1:-49177867 None:intergenic
TTTAATATCGGTGTCTACTT+CGG 0.473694 4_1:-49183868 None:intergenic
GTTGCAGGAGGAGGTGGCCG+TGG 0.474248 4_1:+49179646 Msa0552490:CDS
AGAAGAAATTAGCGAGGAGG+GGG 0.474469 4_1:+49177987 Msa0552490:five_prime_UTR
GTCACAGTAGCATCTCCCTT+TGG 0.480691 4_1:-49179170 None:intergenic
TCTGGCGTTGCAGGAGGAGG+TGG 0.481544 4_1:+49179640 Msa0552490:CDS
CATGGCAACAAGAGGGCGAT+TGG 0.484158 4_1:+49179426 Msa0552490:CDS
GACGTTCTGGGCAAGATGCA+GGG 0.484264 4_1:+49179674 Msa0552490:CDS
CATTGGACAAGGCCAGTCAT+TGG 0.485145 4_1:-49179740 None:intergenic
CTCGTACAGTCTCACAATAT+TGG 0.485907 4_1:+49177720 Msa0552490:five_prime_UTR
TTGCAGAAAGATAAACGTAC+AGG 0.490948 4_1:+49179104 Msa0552490:intron
ACACCACCCTCGTTGTGCCC+AGG 0.493132 4_1:-49180867 None:intergenic
TCAATTAAAATAAAATGAAA+AGG 0.494113 4_1:+49177941 Msa0552490:five_prime_UTR
ATTGGACAAGGCCAGTCATT+GGG 0.494257 4_1:-49179739 None:intergenic
TTCATGATATTGAGATTCCA+TGG 0.494827 4_1:+49178770 Msa0552490:exon
ATTTGCAATACAAACAAGCC+TGG 0.495239 4_1:+49180849 Msa0552490:CDS
CAGGGATTATGGACAGGAAC+GGG 0.495790 4_1:+49183844 Msa0552490:CDS
AGAGGCAGAGGTCAAATTGA+TGG 0.499095 4_1:+49179392 Msa0552490:CDS
GAGTCAAGGGACCGTTATGA+TGG 0.500996 4_1:+49183743 Msa0552490:CDS
AGACAGAGGAAGAGAGTCAA+GGG 0.502977 4_1:+49183730 Msa0552490:CDS
TTAAACAGAGGAGGGCGAGC+TGG 0.505797 4_1:+49182481 Msa0552490:intron
ATTGGATGTGTCCGAATACA+AGG 0.508039 4_1:+49179444 Msa0552490:CDS
ACATAGATAGACCCATTAGA+AGG 0.508080 4_1:-49178816 None:intergenic
GCCCAGAACGTCCCCTGCCA+CGG 0.511393 4_1:-49179663 None:intergenic
AAGAAGAAATTAGCGAGGAG+GGG 0.514944 4_1:+49177986 Msa0552490:five_prime_UTR
ATCTTTACAAATACCACACC+TGG 0.516662 4_1:-49184222 None:intergenic
GTGCCCCTGGAGCAGGGCAA+TGG 0.517779 4_1:+49177863 Msa0552490:five_prime_UTR
ACAGGGGAAGAGATTGAGAC+AGG 0.517987 4_1:+49183825 Msa0552490:CDS
TAACCATTGCCCTGCTCCAG+GGG 0.518883 4_1:-49177866 None:intergenic
ATATTATCATCGGTCCCATA+AGG 0.519106 4_1:-49178849 None:intergenic
GTCCAGCTGGTGCAACTGCA+GGG 0.522936 4_1:+49179707 Msa0552490:CDS
AGATGCTACTGTGACATATG+AGG 0.528491 4_1:+49179178 Msa0552490:CDS
GGCACAACGAGGGTGGTGTA+AGG 0.528607 4_1:+49180871 Msa0552490:CDS
TCGAAATAGAGAGAGGGACA+GGG 0.538004 4_1:+49183808 Msa0552490:CDS
TGAATTAAATCCTTAAATTG+GGG 0.539199 4_1:+49183967 Msa0552490:three_prime_UTR
GTGTTGTTACAGTATTTCCA+TGG 0.541230 4_1:+49184046 Msa0552490:three_prime_UTR
CTCAAATAGAAATTTGTCCA+TGG 0.541510 4_1:-49184063 None:intergenic
GTGATTTATCGCTCCGTCTG+CGG 0.545831 4_1:-49178013 None:intergenic
TTCCGGGCGTGCTGGTTGGG+AGG 0.546175 4_1:+49182734 Msa0552490:CDS
TTACAAAGAGCTTGATGAAG+AGG 0.552917 4_1:+49182507 Msa0552490:CDS
TAGGTGTGGCAATATCAATT+GGG 0.553457 4_1:+49180806 Msa0552490:intron
GTCGATGGTGTTAATGGAAG+AGG 0.554855 4_1:+49179374 Msa0552490:CDS
CCATACCTTTATAACTCCAA+TGG 0.555137 4_1:-49178892 None:intergenic
AATATCTTAGGTTATACAAA+CGG 0.557271 4_1:-49184022 None:intergenic
GGTGCTTCTGGCGTTGCAGG+AGG 0.557530 4_1:+49179634 Msa0552490:CDS
TTCTCTGCTCTCCATCATAA+CGG 0.558553 4_1:-49183754 None:intergenic
AAAGAGACGAATGAACCAAA+GGG 0.558771 4_1:+49179155 Msa0552490:CDS
CTGCAGTTGCACCAGCTGGA+CGG 0.561682 4_1:-49179705 None:intergenic
AAAATGTTAACCAGTGCCCC+TGG 0.562473 4_1:+49177850 Msa0552490:five_prime_UTR
GGTGTTAATGGAAGAGGCAG+AGG 0.562740 4_1:+49179380 Msa0552490:CDS
TTGAGACAGGGATTATGGAC+AGG 0.565122 4_1:+49183838 Msa0552490:CDS
AGATCTATCTATCTATTCAT+CGG 0.570434 4_1:+49178036 Msa0552490:five_prime_UTR
TTCAGCCAACATATTATCAT+CGG 0.570648 4_1:-49178859 None:intergenic
CTGCCGTGGCTGCTGTTGAG+TGG 0.571241 4_1:+49179210 Msa0552490:CDS
AAAGAAGAAATTAGCGAGGA+GGG 0.577000 4_1:+49177985 Msa0552490:five_prime_UTR
CGAAATAGAGAGAGGGACAG+GGG 0.581694 4_1:+49183809 Msa0552490:CDS
GAGACAGAGGAAGAGAGTCA+AGG 0.587406 4_1:+49183729 Msa0552490:CDS
TCGAAGAAACTAAACGTCGC+AGG 0.593458 4_1:+49182533 Msa0552490:CDS
AACAGAGGAGGGCGAGCTGG+AGG 0.593908 4_1:+49182484 Msa0552490:intron
CCTGCAATGCGATGAATGCA+TGG 0.594187 4_1:+49183998 Msa0552490:three_prime_UTR
AAACCACTCAACAGCAGCCA+CGG 0.598977 4_1:-49179213 None:intergenic
CAAAGAGACGAATGAACCAA+AGG 0.600702 4_1:+49179154 Msa0552490:CDS
TAACCAGTGCCCCTGGAGCA+GGG 0.603001 4_1:+49177857 Msa0552490:five_prime_UTR
AAGCCTGGGCACAACGAGGG+TGG 0.605160 4_1:+49180864 Msa0552490:CDS
TTTGCAATACAAACAAGCCT+GGG 0.606882 4_1:+49180850 Msa0552490:CDS
CTTAGCATACCGTTTACCTG+TGG 0.608590 4_1:-49184184 None:intergenic
ACAGGGATTATGGACAGGAA+CGG 0.612302 4_1:+49183843 Msa0552490:CDS
CAACGCCAGAAGCACCAGCA+GGG 0.613406 4_1:-49179627 None:intergenic
CGTCAGTACCAGCAACAACC+GGG 0.613629 4_1:-49179325 None:intergenic
CAGCAAACCATGGCAACAAG+AGG 0.614626 4_1:+49179418 Msa0552490:CDS
ACAGAGAGCATAACGAGGAG+AGG 0.615331 4_1:+49183777 Msa0552490:CDS
CAGGGGAAGAGATTGAGACA+GGG 0.616342 4_1:+49183826 Msa0552490:CDS
TGGGACCGATGATAATATGT+TGG 0.630026 4_1:+49178854 Msa0552490:CDS
CGGGGTGCGTGTAATCGCTG+TGG 0.632515 4_1:+49179595 Msa0552490:CDS
ACAGCAGCCACGGCAGCATG+TGG 0.634443 4_1:-49179203 None:intergenic
GTTGTTGCTGGTACTGACGT+CGG 0.634611 4_1:+49179329 Msa0552490:CDS
AGCAAACCATGGCAACAAGA+GGG 0.635048 4_1:+49179419 Msa0552490:CDS
TTTCTGAAATAATAATAACC+CGG 0.635704 4_1:+49184145 Msa0552490:three_prime_UTR
TGAGGATCCACATGCTGCCG+TGG 0.639570 4_1:+49179196 Msa0552490:CDS
TGGTACTGACGTCGGACCAG+AGG 0.639768 4_1:+49179337 Msa0552490:CDS
AAAGCAGTCGAAATAGAGAG+AGG 0.640490 4_1:+49183801 Msa0552490:CDS
TGCAGAAAGATAAACGTACA+GGG 0.643687 4_1:+49179105 Msa0552490:intron
AAGCAGTCGAAATAGAGAGA+GGG 0.643715 4_1:+49183802 Msa0552490:CDS
TGGAATTGACAAAAGACCAC+AGG 0.645001 4_1:+49184168 Msa0552490:three_prime_UTR
TACAATTGGAGTTTATATAG+CGG 0.645043 4_1:+49179259 Msa0552490:CDS
AACAAGCCTGGGCACAACGA+GGG 0.649708 4_1:+49180861 Msa0552490:CDS
CGTTCTGGGCAAGATGCAGG+GGG 0.650964 4_1:+49179676 Msa0552490:CDS
ATATACTGCAATAGCAGACC+CGG 0.656715 4_1:+49179307 Msa0552490:CDS
ACGGTATGCTAAGAAAATGG+TGG 0.659732 4_1:+49184194 Msa0552490:three_prime_UTR
TTGATGGTTCCAGCAAACCA+TGG 0.662097 4_1:+49179408 Msa0552490:CDS
AAAAGAAGAAATTAGCGAGG+AGG 0.662730 4_1:+49177984 Msa0552490:five_prime_UTR
GAGAAACAGAGAGCATAACG+AGG 0.665827 4_1:+49183772 Msa0552490:CDS
ACAAAATCGTACATTGGACA+AGG 0.668648 4_1:-49179751 None:intergenic
GAGCAGGGCAATGGTTACAG+AGG 0.670308 4_1:+49177872 Msa0552490:five_prime_UTR
CTGAAATAATAATAACCCGG+TGG 0.672948 4_1:+49184148 Msa0552490:three_prime_UTR
CTGAAAAGAAGAAATTAGCG+AGG 0.677265 4_1:+49177981 Msa0552490:five_prime_UTR
AAGAAACTAAACGTCGCAGG+CGG 0.683518 4_1:+49182536 Msa0552490:CDS
GCAATATCAATTGGGCAAAG+CGG 0.687100 4_1:+49180814 Msa0552490:CDS
AAACAAGCCTGGGCACAACG+AGG 0.703032 4_1:+49180860 Msa0552490:CDS
GAAACTGAAAGTGATGTCGA+TGG 0.721373 4_1:+49179359 Msa0552490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTACTAAATTTTTTTTA+GGG - chr4_1:49177667-49177686 None:intergenic 10.0%
!!! TTAGTTACTAAATTTTTTTT+AGG - chr4_1:49177668-49177687 None:intergenic 10.0%
!! TTTAAGAAATGATTAAATAA+TGG + chr4_1:49177827-49177846 Msa0552490:five_prime_UTR 10.0%
!! TCAATTAAAATAAAATGAAA+AGG + chr4_1:49177941-49177960 Msa0552490:five_prime_UTR 10.0%
!! TAAAAAATAAATCAAAACTA+AGG - chr4_1:49181064-49181083 None:intergenic 10.0%
!!! GTTTTGATTTATTTTTTAAT+TGG + chr4_1:49181066-49181085 Msa0552490:intron 10.0%
!! ATTTATTAAAAAAATGTGAA+TGG - chr4_1:49182420-49182439 None:intergenic 10.0%
!! AATACATGTTATATATAAAT+TGG + chr4_1:49182587-49182606 Msa0552490:intron 10.0%
!! AAAAATAACAAAAAGATAAT+AGG - chr4_1:49182983-49183002 None:intergenic 10.0%
!!! TTATCTTTTTGTTATTTTTT+AGG + chr4_1:49182984-49183003 Msa0552490:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG - chr4_1:49183224-49183243 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr4_1:49183224-49183243 Msa0552490:intron 10.0%
!!! ATTGAGTTTTTATTTTACTT+AGG - chr4_1:49177926-49177945 None:intergenic 15.0%
!! AGATAATGAAATTATAGATT+GGG - chr4_1:49180238-49180257 None:intergenic 15.0%
!! TAGATAATGAAATTATAGAT+TGG - chr4_1:49180239-49180258 None:intergenic 15.0%
!! TTAAAAATAAATGAAAACCA+AGG + chr4_1:49180997-49181016 Msa0552490:intron 15.0%
!!! TTGAAAAGAAAATATTTTGA+TGG + chr4_1:49181220-49181239 Msa0552490:intron 15.0%
!! AATCATAGTAATAAGTAATA+TGG + chr4_1:49181688-49181707 Msa0552490:intron 15.0%
!!! TATATTTTAGTATTTCTCTT+TGG - chr4_1:49181753-49181772 None:intergenic 15.0%
!! ATGTATTTATGTAAAATGAA+GGG - chr4_1:49182383-49182402 None:intergenic 15.0%
!! TATGTATTTATGTAAAATGA+AGG - chr4_1:49182384-49182403 None:intergenic 15.0%
!! TTTACATAAATACATACATA+CGG + chr4_1:49182388-49182407 Msa0552490:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr4_1:49183225-49183244 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr4_1:49183223-49183242 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr4_1:49183223-49183242 Msa0552490:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr4_1:49183225-49183244 Msa0552490:intron 15.0%
!! TTTGAATTAAATCCTTAAAT+TGG + chr4_1:49183965-49183984 Msa0552490:three_prime_UTR 15.0%
!! TTGAATTAAATCCTTAAATT+GGG + chr4_1:49183966-49183985 Msa0552490:three_prime_UTR 15.0%
!!! TTTAGGGTTAATTATGTTTT+TGG - chr4_1:49177651-49177670 None:intergenic 20.0%
!! TCAATTATTATACAGGAAAA+TGG - chr4_1:49178159-49178178 None:intergenic 20.0%
!! ATAATATGTGATTACTTGAA+TGG + chr4_1:49178934-49178953 Msa0552490:intron 20.0%
!!! TCATGATATAACCATATTTT+AGG - chr4_1:49179134-49179153 None:intergenic 20.0%
!!! TTTAACAACAAAGATTTTCA+TGG + chr4_1:49179233-49179252 Msa0552490:CDS 20.0%
!! AGTATAAATAAATCAGACAA+CGG - chr4_1:49179798-49179817 None:intergenic 20.0%
!! TATCATATTCAATTTACTTG+TGG - chr4_1:49179996-49180015 None:intergenic 20.0%
!! AATTAATACTCAATGCAAAA+GGG - chr4_1:49180209-49180228 None:intergenic 20.0%
!! AAATTAATACTCAATGCAAA+AGG - chr4_1:49180210-49180229 None:intergenic 20.0%
!!! TAGTTCTCTATGAATTTTAA+AGG + chr4_1:49180265-49180284 Msa0552490:intron 20.0%
!!! TCTCTATTTATTTAGGATTA+GGG - chr4_1:49181656-49181675 None:intergenic 20.0%
!!! TTCTCTATTTATTTAGGATT+AGG - chr4_1:49181657-49181676 None:intergenic 20.0%
!!! CCTTATTTCTCTATTTATTT+AGG - chr4_1:49181663-49181682 None:intergenic 20.0%
!! CCTAAATAAATAGAGAAATA+AGG + chr4_1:49181660-49181679 Msa0552490:intron 20.0%
!!! TCAATAACTGAAAAAGTATA+TGG - chr4_1:49182304-49182323 None:intergenic 20.0%
!! TTACATAAATACATACATAC+GGG + chr4_1:49182389-49182408 Msa0552490:intron 20.0%
!!! ATGATTTTTTTCTTACTGTT+AGG + chr4_1:49182620-49182639 Msa0552490:intron 20.0%
!!! ACAATTTTGAGTTATCATTA+TGG + chr4_1:49182918-49182937 Msa0552490:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr4_1:49183226-49183245 None:intergenic 20.0%
!! AAAATAAAAAAAATGACACG+TGG - chr4_1:49183152-49183171 None:intergenic 20.0%
!!! TTTTTATTTTTTTTTGGCCT+TGG + chr4_1:49183162-49183181 Msa0552490:intron 20.0%
!!! TTTTATTTTTTTTTGGCCTT+GGG + chr4_1:49183163-49183182 Msa0552490:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr4_1:49183226-49183245 Msa0552490:intron 20.0%
!! AGGAACAACTAATAAAAAAT+AGG - chr4_1:49183300-49183319 None:intergenic 20.0%
!!! TTTTATTAGTTGTTCCTTTT+CGG + chr4_1:49183303-49183322 Msa0552490:intron 20.0%
!! TTTGTAAATTGGATATTTAC+AGG - chr4_1:49183574-49183593 None:intergenic 20.0%
!!! TTCTGTAACATTTTGTAAAT+TGG - chr4_1:49183585-49183604 None:intergenic 20.0%
!!! TCTACTGCTATTTTTAATAT+CGG - chr4_1:49183883-49183902 None:intergenic 20.0%
!! TGAATTAAATCCTTAAATTG+GGG + chr4_1:49183967-49183986 Msa0552490:three_prime_UTR 20.0%
!! AATATCTTAGGTTATACAAA+CGG - chr4_1:49184025-49184044 None:intergenic 20.0%
!!! TTTCTGAAATAATAATAACC+CGG + chr4_1:49184145-49184164 Msa0552490:three_prime_UTR 20.0%
! AGATCTATCTATCTATTCAT+CGG + chr4_1:49178036-49178055 Msa0552490:five_prime_UTR 25.0%
! TTATTATACAGGAAAATGGA+AGG - chr4_1:49178155-49178174 None:intergenic 25.0%
! TTGAAAGAGAACAAAATTTC+TGG - chr4_1:49178185-49178204 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_1:49178329-49178348 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_1:49178329-49178348 None:intergenic 25.0%
!! ATTAGGTTAGCATTTTCAAA+TGG + chr4_1:49178463-49178482 Msa0552490:intron 25.0%
! TACTACAAAATGTCAAATAG+TGG + chr4_1:49178568-49178587 Msa0552490:intron 25.0%
!!! AATATGTTGGCTGAATATTT+TGG + chr4_1:49178867-49178886 Msa0552490:CDS 25.0%
! AAGTAATCACATATTATCGT+AGG - chr4_1:49178931-49178950 None:intergenic 25.0%
! ATAAACAGAACCACATAAAT+GGG - chr4_1:49179029-49179048 None:intergenic 25.0%
! TACAATTGGAGTTTATATAG+CGG + chr4_1:49179259-49179278 Msa0552490:CDS 25.0%
!! CTTGTTGTGTTATATTATGT+TGG + chr4_1:49179946-49179965 Msa0552490:intron 25.0%
! AGGTATCAATTAAAGAAAAC+AGG - chr4_1:49180103-49180122 None:intergenic 25.0%
! ATTAATACTCAATGCAAAAG+GGG - chr4_1:49180208-49180227 None:intergenic 25.0%
! AATGAAATTATAGATTGGGT+CGG - chr4_1:49180234-49180253 None:intergenic 25.0%
! TTTAATGTCAGGTATAAGTA+CGG - chr4_1:49180686-49180705 None:intergenic 25.0%
!!! GTGAAACTACATTTTTTCAT+TGG + chr4_1:49180956-49180975 Msa0552490:intron 25.0%
!! TATCTTTTACTACCATAAAC+GGG - chr4_1:49181258-49181277 None:intergenic 25.0%
!! GTATCTTTTACTACCATAAA+CGG - chr4_1:49181259-49181278 None:intergenic 25.0%
!! GTAATACTTTTAATCCTTAG+AGG - chr4_1:49181423-49181442 None:intergenic 25.0%
! TACATTATGTTGATCTCAAA+TGG + chr4_1:49181440-49181459 Msa0552490:intron 25.0%
! ATCTCAATATTTGATATGTG+TGG + chr4_1:49181493-49181512 Msa0552490:intron 25.0%
! AGAAGATTTAATGTATGACA+TGG + chr4_1:49181521-49181540 Msa0552490:intron 25.0%
! ATTTAATGTATGACATGGTT+TGG + chr4_1:49181526-49181545 Msa0552490:intron 25.0%
!! CTCTATTTATTTAGGATTAG+GGG - chr4_1:49181655-49181674 None:intergenic 25.0%
! TAGATGATTTAGGTATATTG+TGG - chr4_1:49181861-49181880 None:intergenic 25.0%
!! GTTTAGTCTTTAGATGATTT+AGG - chr4_1:49181871-49181890 None:intergenic 25.0%
!! TCCTTCAACTTTTTATGTAA+TGG + chr4_1:49181918-49181937 Msa0552490:intron 25.0%
! ACCATTACATAAAAAGTTGA+AGG - chr4_1:49181922-49181941 None:intergenic 25.0%
! ATCGACCTTAATTTATTGTT+GGG + chr4_1:49182008-49182027 Msa0552490:intron 25.0%
! AAAACCCCAACAATAAATTA+AGG - chr4_1:49182016-49182035 None:intergenic 25.0%
! TTGAAATTACTTTGCTAACT+TGG + chr4_1:49182446-49182465 Msa0552490:intron 25.0%
! TGAAATTACTTTGCTAACTT+GGG + chr4_1:49182447-49182466 Msa0552490:intron 25.0%
!! GTTACTTTCTTATTAAACAG+AGG + chr4_1:49182469-49182488 Msa0552490:intron 25.0%
!! TGTTATATATAAATTGGCTC+TGG + chr4_1:49182593-49182612 Msa0552490:intron 25.0%
! ATTGTAATCTAACAATGCTA+GGG - chr4_1:49182903-49182922 None:intergenic 25.0%
! AATTGTAATCTAACAATGCT+AGG - chr4_1:49182904-49182923 None:intergenic 25.0%
!! ACCATTTTCAAATACTTTCA+TGG + chr4_1:49182954-49182973 Msa0552490:intron 25.0%
!!! ACCATGAAAGTATTTGAAAA+TGG - chr4_1:49182958-49182977 None:intergenic 25.0%
!!! TTTATTTTTTTTTGGCCTTG+GGG + chr4_1:49183164-49183183 Msa0552490:intron 25.0%
! TGCCAAAGATTCAAAATTTA+GGG + chr4_1:49183196-49183215 Msa0552490:intron 25.0%
!!! TATGTTTTGAAATAGTATGC+AGG - chr4_1:49183373-49183392 None:intergenic 25.0%
! AGTATAATTTAGATTTGTGC+AGG - chr4_1:49183459-49183478 None:intergenic 25.0%
! TGCACAAATCTAAATTATAC+TGG + chr4_1:49183458-49183477 Msa0552490:intron 25.0%
! TCATGAAATTATGAATCAGT+TGG + chr4_1:49183633-49183652 Msa0552490:intron 25.0%
! TGTAACAACACAAATATCTT+AGG - chr4_1:49184037-49184056 None:intergenic 25.0%
CTGGAACTCAATTATTATAC+AGG - chr4_1:49178166-49178185 None:intergenic 30.0%
TGCAAATTATGCAATCGAAA+AGG - chr4_1:49178241-49178260 None:intergenic 30.0%
! TTCTTATGATTTGCATCCAT+AGG + chr4_1:49178432-49178451 Msa0552490:intron 30.0%
ATCCATAGGCTTATTCAATT+AGG + chr4_1:49178446-49178465 Msa0552490:intron 30.0%
AACCTAATTGAATAAGCCTA+TGG - chr4_1:49178451-49178470 None:intergenic 30.0%
TTCATGATATTGAGATTCCA+TGG + chr4_1:49178770-49178789 Msa0552490:exon 30.0%
! GAAAATTTGCTCCTTCTAAT+GGG + chr4_1:49178805-49178824 Msa0552490:CDS 30.0%
TTCAGCCAACATATTATCAT+CGG - chr4_1:49178862-49178881 None:intergenic 30.0%
TTGCAAAGTGAGGTTTATTT+GGG + chr4_1:49178973-49178992 Msa0552490:intron 30.0%
!! CTTTTTGTTTCCCATTTATG+TGG + chr4_1:49179016-49179035 Msa0552490:intron 30.0%
GATAAACAGAACCACATAAA+TGG - chr4_1:49179030-49179049 None:intergenic 30.0%
! GATTTTCATGGCAATACAAT+TGG + chr4_1:49179245-49179264 Msa0552490:CDS 30.0%
AATGTGACAAAATCGTACAT+TGG - chr4_1:49179760-49179779 None:intergenic 30.0%
!! GAGATTTGTTAACTTTGCTA+AGG + chr4_1:49180155-49180174 Msa0552490:intron 30.0%
ATGAAATTATAGATTGGGTC+GGG - chr4_1:49180233-49180252 None:intergenic 30.0%
TGACCTTATGTAAATTGGAA+AGG - chr4_1:49180335-49180354 None:intergenic 30.0%
TCAGTTGACCTTATGTAAAT+TGG - chr4_1:49180340-49180359 None:intergenic 30.0%
GTTACAATTTACAGCCAATA+AGG + chr4_1:49180364-49180383 Msa0552490:intron 30.0%
GTCAAAGATTTGTACCTTAT+TGG - chr4_1:49180381-49180400 None:intergenic 30.0%
CTTATACCTGACATTAAACT+TGG + chr4_1:49180688-49180707 Msa0552490:intron 30.0%
TCAATTCCAAGTTTAATGTC+AGG - chr4_1:49180697-49180716 None:intergenic 30.0%
!!! CTTGTCTTCTTTTTTGACAT+AGG + chr4_1:49180787-49180806 Msa0552490:intron 30.0%
ACTAATAGTATGTACTTGGA+AGG - chr4_1:49180920-49180939 None:intergenic 30.0%
TGTCACTAATAGTATGTACT+TGG - chr4_1:49180924-49180943 None:intergenic 30.0%
!!! CAAAATTCAGTTTTGTTAGC+CGG + chr4_1:49181089-49181108 Msa0552490:intron 30.0%
!!! AAAATTCAGTTTTGTTAGCC+GGG + chr4_1:49181090-49181109 Msa0552490:intron 30.0%
!!! GAAAATATTTTGATGGCAAG+TGG + chr4_1:49181227-49181246 Msa0552490:intron 30.0%
!! TTGTACTTTTTGTTCCTCTA+AGG + chr4_1:49181406-49181425 Msa0552490:intron 30.0%
AGTTCAATTCTTAAAGGTAG+AGG - chr4_1:49181799-49181818 None:intergenic 30.0%
GAGGATAGTTCAATTCTTAA+AGG - chr4_1:49181805-49181824 None:intergenic 30.0%
TCTACCATTTGTTCTATCAT+TGG + chr4_1:49181891-49181910 Msa0552490:intron 30.0%
CATCGACCTTAATTTATTGT+TGG + chr4_1:49182007-49182026 Msa0552490:intron 30.0%
TCGACCTTAATTTATTGTTG+GGG + chr4_1:49182009-49182028 Msa0552490:intron 30.0%
TCATACAAGATAGATGCAAT+GGG - chr4_1:49182055-49182074 None:intergenic 30.0%
ATCATACAAGATAGATGCAA+TGG - chr4_1:49182056-49182075 None:intergenic 30.0%
TTAGAGGTGAAAATAGGATA+TGG - chr4_1:49182168-49182187 None:intergenic 30.0%
AGGAATGAAAGACAAGTATA+TGG - chr4_1:49182226-49182245 None:intergenic 30.0%
TGGAAACATGATTTGAAAAC+AGG - chr4_1:49182246-49182265 None:intergenic 30.0%
! CTGAAAAAGTATATGGAAAC+AGG - chr4_1:49182297-49182316 None:intergenic 30.0%
AAATTCCAACATTTCGGATT+TGG - chr4_1:49182344-49182363 None:intergenic 30.0%
ACCTACAAATTCCAACATTT+CGG - chr4_1:49182350-49182369 None:intergenic 30.0%
ACTTTCTTATTAAACAGAGG+AGG + chr4_1:49182472-49182491 Msa0552490:intron 30.0%
CTTTCTTATTAAACAGAGGA+GGG + chr4_1:49182473-49182492 Msa0552490:intron 30.0%
! TTTTCTTACTGTTAGGATGA+TGG + chr4_1:49182627-49182646 Msa0552490:intron 30.0%
AGTTATCATTATGGCTATAG+CGG + chr4_1:49182927-49182946 Msa0552490:intron 30.0%
! TTTAGGCTTAATTGCACTTT+TGG + chr4_1:49183001-49183020 Msa0552490:intron 30.0%
TGCCAAAGATTCAATACTTA+GGG - chr4_1:49183088-49183107 None:intergenic 30.0%
! TATTGAATCTTTGGCAGTTT+TGG + chr4_1:49183092-49183111 Msa0552490:intron 30.0%
!!! TTATTTTTTTTTGGCCTTGG+GGG + chr4_1:49183165-49183184 Msa0552490:intron 30.0%
! TTTTGAATCTTTGGCAGTTT+TGG - chr4_1:49183192-49183211 None:intergenic 30.0%
CTGCCAAAGATTCAAAATTT+AGG + chr4_1:49183195-49183214 Msa0552490:intron 30.0%
GCCAAAGATTCAAAATTTAG+GGG + chr4_1:49183197-49183216 Msa0552490:intron 30.0%
CCAAAGATTCAAAATTTAGG+GGG + chr4_1:49183198-49183217 Msa0552490:intron 30.0%
! AATAGGCTTAATTGCACTTT+TGG - chr4_1:49183283-49183302 None:intergenic 30.0%
! ATCTAAATTATACTGGCTGT+TGG + chr4_1:49183465-49183484 Msa0552490:intron 30.0%
ATCCTTACATGAGCAAATTA+TGG - chr4_1:49183524-49183543 None:intergenic 30.0%
TAAGGATATGTAGAGATTCT+AGG + chr4_1:49183537-49183556 Msa0552490:intron 30.0%
CGGTATTATAAACAGTAAGT+TGG - chr4_1:49183672-49183691 None:intergenic 30.0%
CTTACTGTTTATAATACCGA+TGG + chr4_1:49183673-49183692 Msa0552490:intron 30.0%
! TTTAATATCGGTGTCTACTT+CGG - chr4_1:49183871-49183890 None:intergenic 30.0%
ATTGAAATCCTTCGCAAAAA+AGG - chr4_1:49183942-49183961 None:intergenic 30.0%
CTCAAATAGAAATTTGTCCA+TGG - chr4_1:49184066-49184085 None:intergenic 30.0%
TAAACGGTATGCTAAGAAAA+TGG + chr4_1:49184191-49184210 Msa0552490:three_prime_UTR 30.0%
!! TGGTTACAGAGGCATAATTT+TGG + chr4_1:49177883-49177902 Msa0552490:five_prime_UTR 35.0%
CTGAAAAGAAGAAATTAGCG+AGG + chr4_1:49177981-49178000 Msa0552490:five_prime_UTR 35.0%
AAAAGAAGAAATTAGCGAGG+AGG + chr4_1:49177984-49178003 Msa0552490:five_prime_UTR 35.0%
AAAGAAGAAATTAGCGAGGA+GGG + chr4_1:49177985-49178004 Msa0552490:five_prime_UTR 35.0%
GAAGCTGGAGATAATATCAT+AGG - chr4_1:49178307-49178326 None:intergenic 35.0%
AAATTGAATAATGCGGAAGC+TGG - chr4_1:49178322-49178341 None:intergenic 35.0%
ATCATAAGAAAAACGACACG+TGG - chr4_1:49178422-49178441 None:intergenic 35.0%
GTCAAATAGTGGTTATAGAG+TGG + chr4_1:49178579-49178598 Msa0552490:intron 35.0%
GTATTGTCAATTGCAGATCA+CGG - chr4_1:49178627-49178646 None:intergenic 35.0%
! TTAGAAGGAGCAAATTTTCC+AGG - chr4_1:49178804-49178823 None:intergenic 35.0%
! GGAAAATTTGCTCCTTCTAA+TGG + chr4_1:49178804-49178823 Msa0552490:CDS 35.0%
ACATAGATAGACCCATTAGA+AGG - chr4_1:49178819-49178838 None:intergenic 35.0%
ATATTATCATCGGTCCCATA+AGG - chr4_1:49178852-49178871 None:intergenic 35.0%
!!! GCTGAATATTTTGGAACCAT+TGG + chr4_1:49178876-49178895 Msa0552490:CDS 35.0%
TGGAACCATTGGAGTTATAA+AGG + chr4_1:49178887-49178906 Msa0552490:CDS 35.0%
CCATACCTTTATAACTCCAA+TGG - chr4_1:49178895-49178914 None:intergenic 35.0%
CCATTGGAGTTATAAAGGTA+TGG + chr4_1:49178892-49178911 Msa0552490:intron 35.0%
CAAATAAACCTCACTTTGCA+AGG - chr4_1:49178974-49178993 None:intergenic 35.0%
CTTGCAAAGTGAGGTTTATT+TGG + chr4_1:49178972-49178991 Msa0552490:intron 35.0%
GTGAAAAATGAGTGATAGTC+TGG - chr4_1:49179070-49179089 None:intergenic 35.0%
TTGCAGAAAGATAAACGTAC+AGG + chr4_1:49179104-49179123 Msa0552490:intron 35.0%
TGCAGAAAGATAAACGTACA+GGG + chr4_1:49179105-49179124 Msa0552490:intron 35.0%
GTACAGGGAAACCTAAAATA+TGG + chr4_1:49179120-49179139 Msa0552490:CDS 35.0%
AAAGAGACGAATGAACCAAA+GGG + chr4_1:49179155-49179174 Msa0552490:CDS 35.0%
! TATAGCGGAGTCAAAAAACA+AGG + chr4_1:49179274-49179293 Msa0552490:CDS 35.0%
CTGCTATTGCAGTATATGTT+TGG - chr4_1:49179304-49179323 None:intergenic 35.0%
CATATCACAGACCTTGTATT+CGG - chr4_1:49179458-49179477 None:intergenic 35.0%
!! CGAATGTGAACTTTGCTTTT+CGG + chr4_1:49179575-49179594 Msa0552490:CDS 35.0%
!! GAATGTGAACTTTGCTTTTC+GGG + chr4_1:49179576-49179595 Msa0552490:CDS 35.0%
!! AATGTGAACTTTGCTTTTCG+GGG + chr4_1:49179577-49179596 Msa0552490:CDS 35.0%
ACAAAATCGTACATTGGACA+AGG - chr4_1:49179754-49179773 None:intergenic 35.0%
GTAACCCAATTGATGAAACT+GGG - chr4_1:49179920-49179939 None:intergenic 35.0%
AGTAACCCAATTGATGAAAC+TGG - chr4_1:49179921-49179940 None:intergenic 35.0%
CATACTCTTGTGAATGAACA+TGG + chr4_1:49180056-49180075 Msa0552490:intron 35.0%
TGGCCTTTCCAATTTACATA+AGG + chr4_1:49180329-49180348 Msa0552490:intron 35.0%
AAAGAGAAGTTCAGTAGATG+AGG - chr4_1:49180440-49180459 None:intergenic 35.0%
!! CCTAAATTTGCTACAACAAC+TGG - chr4_1:49180515-49180534 None:intergenic 35.0%
CCAGTTGTTGTAGCAAATTT+AGG + chr4_1:49180512-49180531 Msa0552490:intron 35.0%
! TGCAAGTTGGCTATATGATA+TGG + chr4_1:49180571-49180590 Msa0552490:intron 35.0%
! GCAAGTTGGCTATATGATAT+GGG + chr4_1:49180572-49180591 Msa0552490:intron 35.0%
! CAAGTTGGCTATATGATATG+GGG + chr4_1:49180573-49180592 Msa0552490:intron 35.0%
GCTCTGCTTAACTAAACATT+AGG + chr4_1:49180646-49180665 Msa0552490:intron 35.0%
!!! CTTCTTTTTTGACATAGGTG+TGG + chr4_1:49180792-49180811 Msa0552490:intron 35.0%
ATAGGTGTGGCAATATCAAT+TGG + chr4_1:49180805-49180824 Msa0552490:intron 35.0%
TAGGTGTGGCAATATCAATT+GGG + chr4_1:49180806-49180825 Msa0552490:intron 35.0%
ATTTGCAATACAAACAAGCC+TGG + chr4_1:49180849-49180868 Msa0552490:CDS 35.0%
TTTGCAATACAAACAAGCCT+GGG + chr4_1:49180850-49180869 Msa0552490:CDS 35.0%
ACAAATTACAGCATTCACCT+TGG - chr4_1:49181017-49181036 None:intergenic 35.0%
AGTATCCTAGATATGCAATG+TGG + chr4_1:49181115-49181134 Msa0552490:intron 35.0%
ACAATCCACATTGCATATCT+AGG - chr4_1:49181123-49181142 None:intergenic 35.0%
AGAAGTTCAAAATAGCCACT+TGG - chr4_1:49181162-49181181 None:intergenic 35.0%
ATATGATGATCATTGTGAGC+AGG - chr4_1:49181320-49181339 None:intergenic 35.0%
ACAGAAACCAAGACAAAGAT+AGG - chr4_1:49181552-49181571 None:intergenic 35.0%
! TCATCTTTTATCCAAACCAC+AGG - chr4_1:49181581-49181600 None:intergenic 35.0%
CAATTCTTAAAGGTAGAGGA+TGG - chr4_1:49181795-49181814 None:intergenic 35.0%
AGCTCCAATGATAGAACAAA+TGG - chr4_1:49181898-49181917 None:intergenic 35.0%
CGATGTCATAAAGATGACAA+TGG - chr4_1:49181992-49182011 None:intergenic 35.0%
CATACAAGATAGATGCAATG+GGG - chr4_1:49182054-49182073 None:intergenic 35.0%
TCTATCTTGTATGATGAACC+TGG + chr4_1:49182061-49182080 Msa0552490:intron 35.0%
CTATCTTGTATGATGAACCT+GGG + chr4_1:49182062-49182081 Msa0552490:intron 35.0%
TATCTTGTATGATGAACCTG+GGG + chr4_1:49182063-49182082 Msa0552490:intron 35.0%
TCAATGATGAGATAGAGACA+TGG - chr4_1:49182266-49182285 None:intergenic 35.0%
TCCGAAATGTTGGAATTTGT+AGG + chr4_1:49182346-49182365 Msa0552490:intron 35.0%
TTACAAAGAGCTTGATGAAG+AGG + chr4_1:49182507-49182526 Msa0552490:CDS 35.0%
! AGTTTCAGATTGCTGTGTTT+TGG - chr4_1:49182697-49182716 None:intergenic 35.0%
GTTATCATTATGGCTATAGC+GGG + chr4_1:49182928-49182947 Msa0552490:intron 35.0%
!! TCCCCTAAGTATTGAATCTT+TGG + chr4_1:49183083-49183102 Msa0552490:intron 35.0%
GCCAAAGATTCAATACTTAG+GGG - chr4_1:49183087-49183106 None:intergenic 35.0%
CTGCCAAAGATTCAATACTT+AGG - chr4_1:49183089-49183108 None:intergenic 35.0%
!!! TATTTTTTTTTGGCCTTGGG+GGG + chr4_1:49183166-49183185 Msa0552490:intron 35.0%
! CCCCCTAAATTTTGAATCTT+TGG - chr4_1:49183201-49183220 None:intergenic 35.0%
TTGCAAAAAGAATGCCGAAA+AGG - chr4_1:49183320-49183339 None:intergenic 35.0%
! TATATTTGCTAGTTGCTTGC+CGG + chr4_1:49183417-49183436 Msa0552490:intron 35.0%
ATGAGCAAATTATGGCAACA+TGG - chr4_1:49183516-49183535 None:intergenic 35.0%
!! TGCCATAATTTGCTCATGTA+AGG + chr4_1:49183519-49183538 Msa0552490:intron 35.0%
ATGATGATCACATATCAGAG+TGG - chr4_1:49183617-49183636 None:intergenic 35.0%
TGTTTATAATACCGATGGCA+GGG + chr4_1:49183678-49183697 Msa0552490:intron 35.0%
!!! ATGTGTAACCTTTTTTGCGA+AGG + chr4_1:49183931-49183950 Msa0552490:three_prime_UTR 35.0%
GGATATCAATCCCCAATTTA+AGG - chr4_1:49183980-49183999 None:intergenic 35.0%
! GTGTTGTTACAGTATTTCCA+TGG + chr4_1:49184046-49184065 Msa0552490:three_prime_UTR 35.0%
!! ACTGAACTTAGTTTGTTGTC+TGG + chr4_1:49184106-49184125 Msa0552490:three_prime_UTR 35.0%
CTGAAATAATAATAACCCGG+TGG + chr4_1:49184148-49184167 Msa0552490:three_prime_UTR 35.0%
CTCGTACAGTCTCACAATAT+TGG + chr4_1:49177720-49177739 Msa0552490:five_prime_UTR 40.0%
AAGAAGAAATTAGCGAGGAG+GGG + chr4_1:49177986-49178005 Msa0552490:five_prime_UTR 40.0%
AATGGAAGGAAGAAACGAAG+AGG - chr4_1:49178141-49178160 None:intergenic 40.0%
GCGAACACTACATAACTGTT+TGG - chr4_1:49178540-49178559 None:intergenic 40.0%
CAATTGCAGATCACGGAAAA+TGG - chr4_1:49178620-49178639 None:intergenic 40.0%
AGAAGCAAGACACTTGACAT+CGG - chr4_1:49178649-49178668 None:intergenic 40.0%
TATGTCTGCAACTTGCCTTA+TGG + chr4_1:49178834-49178853 Msa0552490:CDS 40.0%
ATGTCTGCAACTTGCCTTAT+GGG + chr4_1:49178835-49178854 Msa0552490:CDS 40.0%
TGGGACCGATGATAATATGT+TGG + chr4_1:49178854-49178873 Msa0552490:CDS 40.0%
! TTTTCTGTCCTTGCAAAGTG+AGG + chr4_1:49178963-49178982 Msa0552490:intron 40.0%
CAAAGAGACGAATGAACCAA+AGG + chr4_1:49179154-49179173 Msa0552490:CDS 40.0%
AGATGCTACTGTGACATATG+AGG + chr4_1:49179178-49179197 Msa0552490:CDS 40.0%
ATATACTGCAATAGCAGACC+CGG + chr4_1:49179307-49179326 Msa0552490:CDS 40.0%
ACATCACTTTCAGTTTCCTC+TGG - chr4_1:49179356-49179375 None:intergenic 40.0%
GAAACTGAAAGTGATGTCGA+TGG + chr4_1:49179359-49179378 Msa0552490:CDS 40.0%
! AGTGATGTCGATGGTGTTAA+TGG + chr4_1:49179368-49179387 Msa0552490:CDS 40.0%
ATTGGATGTGTCCGAATACA+AGG + chr4_1:49179444-49179463 Msa0552490:CDS 40.0%
CAAGGTCTGTGATATGAGAT+TGG + chr4_1:49179462-49179481 Msa0552490:intron 40.0%
TCAGACAACGGAAAGAATGT+GGG - chr4_1:49179786-49179805 None:intergenic 40.0%
ATCAGACAACGGAAAGAATG+TGG - chr4_1:49179787-49179806 None:intergenic 40.0%
GTTGCCCAGTTTCATCAATT+GGG + chr4_1:49179913-49179932 Msa0552490:intron 40.0%
TATTATGTTGGACGTAGTGC+TGG + chr4_1:49179958-49179977 Msa0552490:intron 40.0%
TTGCAAAGTGCAAAATCAGG+AGG - chr4_1:49180123-49180142 None:intergenic 40.0%
ACGTTGCAAAGTGCAAAATC+AGG - chr4_1:49180126-49180145 None:intergenic 40.0%
! GATTTTGCACTTTGCAACGT+TGG + chr4_1:49180126-49180145 Msa0552490:intron 40.0%
TTGCTTGAGTGCAAATCTAG+TGG + chr4_1:49180309-49180328 Msa0552490:intron 40.0%
AAGTTCAGTAGATGAGGACA+AGG - chr4_1:49180434-49180453 None:intergenic 40.0%
! TCTGTCTCTTTTGTCCTTGT+GGG + chr4_1:49180462-49180481 Msa0552490:intron 40.0%
!! GTGGCAGTTGATTTTGCATT+TGG + chr4_1:49180487-49180506 Msa0552490:intron 40.0%
GCTATATGATATGGGGCTTA+TGG + chr4_1:49180580-49180599 Msa0552490:intron 40.0%
CTTAACTAAACATTAGGCCG+AGG + chr4_1:49180652-49180671 Msa0552490:intron 40.0%
TAAGTACGGTATAACAGCCT+CGG - chr4_1:49180672-49180691 None:intergenic 40.0%
TGGAATTGATCTGCATGATG+TGG + chr4_1:49180708-49180727 Msa0552490:intron 40.0%
GCAATATCAATTGGGCAAAG+CGG + chr4_1:49180814-49180833 Msa0552490:CDS 40.0%
! TATGCAATGTGGATTGTCAG+CGG + chr4_1:49181126-49181145 Msa0552490:intron 40.0%
TGCCGCAAAATCACATACAT+CGG - chr4_1:49181386-49181405 None:intergenic 40.0%
!! AGCATTGATAAAGAGAGTGG+AGG - chr4_1:49181824-49181843 None:intergenic 40.0%
!! TGGAGCATTGATAAAGAGAG+TGG - chr4_1:49181827-49181846 None:intergenic 40.0%
CTCTTTATCAATGCTCCAAC+AGG + chr4_1:49181829-49181848 Msa0552490:intron 40.0%
ATATTGTGGAGAAGACCTGT+TGG - chr4_1:49181847-49181866 None:intergenic 40.0%
CCTAGCTTAGAGGTGAAAAT+AGG - chr4_1:49182174-49182193 None:intergenic 40.0%
! CCTATTTTCACCTCTAAGCT+AGG + chr4_1:49182171-49182190 Msa0552490:intron 40.0%
TTCCTCCAAATCCGAAATGT+TGG + chr4_1:49182336-49182355 Msa0552490:intron 40.0%
TTCCAACATTTCGGATTTGG+AGG - chr4_1:49182341-49182360 None:intergenic 40.0%
GGTGAGCTGTATGATGAATT+TGG + chr4_1:49182648-49182667 Msa0552490:CDS 40.0%
TGGCACGGAATTTCTTCTTA+AGG - chr4_1:49182677-49182696 None:intergenic 40.0%
AGTGTGATAGACAATGGGAA+GGG - chr4_1:49182867-49182886 None:intergenic 40.0%
AAGTGTGATAGACAATGGGA+AGG - chr4_1:49182868-49182887 None:intergenic 40.0%
! GGGAAAGTGTGATAGACAAT+GGG - chr4_1:49182872-49182891 None:intergenic 40.0%
AACAATGCTAGGGAACATGT+GGG - chr4_1:49182893-49182912 None:intergenic 40.0%
TAACAATGCTAGGGAACATG+TGG - chr4_1:49182894-49182913 None:intergenic 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG - chr4_1:49183256-49183275 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG - chr4_1:49183255-49183274 None:intergenic 40.0%
CCCTATCTTTCCAAAACTTG+CGG + chr4_1:49183026-49183045 Msa0552490:intron 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG - chr4_1:49183254-49183273 None:intergenic 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr4_1:49183254-49183273 Msa0552490:intron 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr4_1:49183026-49183045 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr4_1:49183255-49183274 Msa0552490:intron 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr4_1:49183256-49183275 Msa0552490:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr4_1:49183257-49183276 Msa0552490:intron 40.0%
! TTCGGCATTCTTTTTGCAAC+TGG + chr4_1:49183321-49183340 Msa0552490:intron 40.0%
CTGTTTATAATACCGATGGC+AGG + chr4_1:49183677-49183696 Msa0552490:intron 40.0%
ACAGAAAAAAGCAGAGACAG+AGG + chr4_1:49183716-49183735 Msa0552490:CDS 40.0%
TTCTCTGCTCTCCATCATAA+CGG - chr4_1:49183757-49183776 None:intergenic 40.0%
AAAGCAGTCGAAATAGAGAG+AGG + chr4_1:49183801-49183820 Msa0552490:CDS 40.0%
AAGCAGTCGAAATAGAGAGA+GGG + chr4_1:49183802-49183821 Msa0552490:CDS 40.0%
AGAGATTGAGACAGGGATTA+TGG + chr4_1:49183833-49183852 Msa0552490:CDS 40.0%
GCATTCTGATGTCTTGACTA+TGG + chr4_1:49183906-49183925 Msa0552490:exon 40.0%
! TGGTCTTTTGTCAATTCCAC+CGG - chr4_1:49184167-49184186 None:intergenic 40.0%
TGGAATTGACAAAAGACCAC+AGG + chr4_1:49184168-49184187 Msa0552490:three_prime_UTR 40.0%
GACAAAAGACCACAGGTAAA+CGG + chr4_1:49184175-49184194 Msa0552490:three_prime_UTR 40.0%
ACGGTATGCTAAGAAAATGG+TGG + chr4_1:49184194-49184213 Msa0552490:three_prime_UTR 40.0%
! AAGAAAATGGTGGCTTTTCC+AGG + chr4_1:49184204-49184223 Msa0552490:three_prime_UTR 40.0%
AAAATGTTAACCAGTGCCCC+TGG + chr4_1:49177850-49177869 Msa0552490:five_prime_UTR 45.0%
AGAAGAAATTAGCGAGGAGG+GGG + chr4_1:49177987-49178006 Msa0552490:five_prime_UTR 45.0%
!!! GAGCTCTGTGCTGGTTTTAA+CGG + chr4_1:49178739-49178758 Msa0552490:intron 45.0%
! TTTTCCAGGAATGCTTGCCA+TGG - chr4_1:49178790-49178809 None:intergenic 45.0%
! GTCGATGGTGTTAATGGAAG+AGG + chr4_1:49179374-49179393 Msa0552490:CDS 45.0%
AGAGGCAGAGGTCAAATTGA+TGG + chr4_1:49179392-49179411 Msa0552490:CDS 45.0%
! TTGATGGTTCCAGCAAACCA+TGG + chr4_1:49179408-49179427 Msa0552490:CDS 45.0%
AGCAAACCATGGCAACAAGA+GGG + chr4_1:49179419-49179438 Msa0552490:CDS 45.0%
ATTGGACAAGGCCAGTCATT+GGG - chr4_1:49179742-49179761 None:intergenic 45.0%
CAGACAACGGAAAGAATGTG+GGG - chr4_1:49179785-49179804 None:intergenic 45.0%
CGTTGCCCAGTTTCATCAAT+TGG + chr4_1:49179912-49179931 Msa0552490:intron 45.0%
ATGCAAAAGGGGACGCAATT+TGG - chr4_1:49180197-49180216 None:intergenic 45.0%
GGAAGCAATCATCATGTGAG+AGG + chr4_1:49180286-49180305 Msa0552490:intron 45.0%
!! CTTTGTTGTTAACCTCTCCC+CGG + chr4_1:49180400-49180419 Msa0552490:intron 45.0%
!! TTTGTTGTTAACCTCTCCCC+GGG + chr4_1:49180401-49180420 Msa0552490:intron 45.0%
CACAAGGACAAAAGAGACAG+AGG - chr4_1:49180463-49180482 None:intergenic 45.0%
! CTCTGTCTCTTTTGTCCTTG+TGG + chr4_1:49180461-49180480 Msa0552490:intron 45.0%
!! TCTTTTGTCCTTGTGGGTTG+TGG + chr4_1:49180468-49180487 Msa0552490:intron 45.0%
ATTGTGCACCGTTGGAACTT+GGG + chr4_1:49180541-49180560 Msa0552490:intron 45.0%
ACTACACTCCCAAGTTCCAA+CGG - chr4_1:49180552-49180571 None:intergenic 45.0%
ATTAGTGACACCTCTGATGC+AGG + chr4_1:49180934-49180953 Msa0552490:intron 45.0%
TGTAGTTTCACCTGCATCAG+AGG - chr4_1:49180947-49180966 None:intergenic 45.0%
! GCATATCTAGGATACTGACC+CGG - chr4_1:49181111-49181130 None:intergenic 45.0%
! CGCCGATGTATGTGATTTTG+CGG + chr4_1:49181381-49181400 Msa0552490:intron 45.0%
GGTTTGGCCTATCTTTGTCT+TGG + chr4_1:49181542-49181561 Msa0552490:intron 45.0%
TGGTTTCTGTTGAAGTCCTG+TGG + chr4_1:49181562-49181581 Msa0552490:intron 45.0%
TCTGTTGAAGTCCTGTGGTT+TGG + chr4_1:49181567-49181586 Msa0552490:intron 45.0%
GATGCAATGGGGATGAATAC+AGG - chr4_1:49182043-49182062 None:intergenic 45.0%
CCTAGCTTAGAGGTGAAAAC+AGG - chr4_1:49182116-49182135 None:intergenic 45.0%
! CCTGTTTTCACCTCTAAGCT+AGG + chr4_1:49182113-49182132 Msa0552490:intron 45.0%
TCGAAGAAACTAAACGTCGC+AGG + chr4_1:49182533-49182552 Msa0552490:CDS 45.0%
AAGAAACTAAACGTCGCAGG+CGG + chr4_1:49182536-49182555 Msa0552490:CDS 45.0%
!!! CAGATTGCTGTGTTTTGGCA+CGG - chr4_1:49182692-49182711 None:intergenic 45.0%
AGCTAATGCTGCAACTTTGC+AGG + chr4_1:49182821-49182840 Msa0552490:intron 45.0%
TGTGATAGACAATGGGAAGG+GGG - chr4_1:49182865-49182884 None:intergenic 45.0%
GTGTGATAGACAATGGGAAG+GGG - chr4_1:49182866-49182885 None:intergenic 45.0%
! GGGGAAAGTGTGATAGACAA+TGG - chr4_1:49182873-49182892 None:intergenic 45.0%
ACAATGCTAGGGAACATGTG+GGG - chr4_1:49182892-49182911 None:intergenic 45.0%
AGACAGAGGAAGAGAGTCAA+GGG + chr4_1:49183730-49183749 Msa0552490:CDS 45.0%
! GAGAAACAGAGAGCATAACG+AGG + chr4_1:49183772-49183791 Msa0552490:CDS 45.0%
TCGAAATAGAGAGAGGGACA+GGG + chr4_1:49183808-49183827 Msa0552490:CDS 45.0%
TTGAGACAGGGATTATGGAC+AGG + chr4_1:49183838-49183857 Msa0552490:CDS 45.0%
ACAGGGATTATGGACAGGAA+CGG + chr4_1:49183843-49183862 Msa0552490:CDS 45.0%
! GGTCTTTTGTCAATTCCACC+GGG - chr4_1:49184166-49184185 None:intergenic 45.0%
CTTAGCATACCGTTTACCTG+TGG - chr4_1:49184187-49184206 None:intergenic 45.0%
!!! TCATTTTTTTTATTTTTTTT+TGG + chr4_1:49183156-49183175 Msa0552490:intron 5.0%
GTGATTTATCGCTCCGTCTG+CGG - chr4_1:49178016-49178035 None:intergenic 50.0%
! GTTTTCTCAGAGCTCTGTGC+TGG + chr4_1:49178730-49178749 Msa0552490:intron 50.0%
GATTCCATGGCAAGCATTCC+TGG + chr4_1:49178783-49178802 Msa0552490:exon 50.0%
GTCACAGTAGCATCTCCCTT+TGG - chr4_1:49179173-49179192 None:intergenic 50.0%
AAACCACTCAACAGCAGCCA+CGG - chr4_1:49179216-49179235 None:intergenic 50.0%
ACGTCAGTACCAGCAACAAC+CGG - chr4_1:49179329-49179348 None:intergenic 50.0%
!! GTTGTTGCTGGTACTGACGT+CGG + chr4_1:49179329-49179348 Msa0552490:CDS 50.0%
GGTGTTAATGGAAGAGGCAG+AGG + chr4_1:49179380-49179399 Msa0552490:CDS 50.0%
! CTCTTGTTGCCATGGTTTGC+TGG - chr4_1:49179420-49179439 None:intergenic 50.0%
CAGCAAACCATGGCAACAAG+AGG + chr4_1:49179418-49179437 Msa0552490:CDS 50.0%
GGCTATTTGGTCCCAATGAC+TGG + chr4_1:49179728-49179747 Msa0552490:CDS 50.0%
CATTGGACAAGGCCAGTCAT+TGG - chr4_1:49179743-49179762 None:intergenic 50.0%
ATCAACTGCCACAACCCACA+AGG - chr4_1:49180479-49180498 None:intergenic 50.0%
GTTCCAACGGTGCACAATCT+TGG - chr4_1:49180539-49180558 None:intergenic 50.0%
GATTGTGCACCGTTGGAACT+TGG + chr4_1:49180540-49180559 Msa0552490:intron 50.0%
! CTTGGGAGTGTAGTGCAAGT+TGG + chr4_1:49180558-49180577 Msa0552490:intron 50.0%
! CAATGTGGATTGTCAGCGGT+AGG + chr4_1:49181130-49181149 Msa0552490:intron 50.0%
TGGATTGTCAGCGGTAGGAT+AGG + chr4_1:49181135-49181154 Msa0552490:intron 50.0%
CAAGTGGAGAGTCCCGTTTA+TGG + chr4_1:49181243-49181262 Msa0552490:intron 50.0%
AACCTGGGGTGCATAAACTC+TGG + chr4_1:49182077-49182096 Msa0552490:intron 50.0%
TACCAGAGTTTATGCACCCC+AGG - chr4_1:49182082-49182101 None:intergenic 50.0%
GCGCACAAAACCTAGCTTAG+AGG - chr4_1:49182126-49182145 None:intergenic 50.0%
GCGCACAAAACCTAGCTTAG+AGG - chr4_1:49182126-49182145 None:intergenic 50.0%
GACACGTGGCACCTCATTTA+GGG - chr4_1:49183138-49183157 None:intergenic 50.0%
TGACACGTGGCACCTCATTT+AGG - chr4_1:49183139-49183158 None:intergenic 50.0%
AGGACCATCAAACTCGAGTC+CGG - chr4_1:49183439-49183458 None:intergenic 50.0%
TCTCTGTCAATCCCTGCCAT+CGG - chr4_1:49183692-49183711 None:intergenic 50.0%
GAGACAGAGGAAGAGAGTCA+AGG + chr4_1:49183729-49183748 Msa0552490:CDS 50.0%
GAGTCAAGGGACCGTTATGA+TGG + chr4_1:49183743-49183762 Msa0552490:CDS 50.0%
! ACAGAGAGCATAACGAGGAG+AGG + chr4_1:49183777-49183796 Msa0552490:CDS 50.0%
GTCGAAATAGAGAGAGGGAC+AGG + chr4_1:49183807-49183826 Msa0552490:CDS 50.0%
CGAAATAGAGAGAGGGACAG+GGG + chr4_1:49183809-49183828 Msa0552490:CDS 50.0%
ACAGGGGAAGAGATTGAGAC+AGG + chr4_1:49183825-49183844 Msa0552490:CDS 50.0%
CAGGGGAAGAGATTGAGACA+GGG + chr4_1:49183826-49183845 Msa0552490:CDS 50.0%
CAGGGATTATGGACAGGAAC+GGG + chr4_1:49183844-49183863 Msa0552490:CDS 50.0%
CCATGCATTCATCGCATTGC+AGG - chr4_1:49184001-49184020 None:intergenic 50.0%
CCTGCAATGCGATGAATGCA+TGG + chr4_1:49183998-49184017 Msa0552490:three_prime_UTR 50.0%
! AATGGTGGCTTTTCCAGGTG+TGG + chr4_1:49184209-49184228 Msa0552490:three_prime_UTR 50.0%
TAACCATTGCCCTGCTCCAG+GGG - chr4_1:49177869-49177888 None:intergenic 55.0%
GTAACCATTGCCCTGCTCCA+GGG - chr4_1:49177870-49177889 None:intergenic 55.0%
TGTAACCATTGCCCTGCTCC+AGG - chr4_1:49177871-49177890 None:intergenic 55.0%
GAGCAGGGCAATGGTTACAG+AGG + chr4_1:49177872-49177891 Msa0552490:five_prime_UTR 55.0%
GTCACGCGCTTCTTCGATTC+TGG + chr4_1:49178100-49178119 Msa0552490:five_prime_UTR 55.0%
ATAGCAGACCCGGTTGTTGC+TGG + chr4_1:49179317-49179336 Msa0552490:CDS 55.0%
CGTCAGTACCAGCAACAACC+GGG - chr4_1:49179328-49179347 None:intergenic 55.0%
CAATCGCCCTCTTGTTGCCA+TGG - chr4_1:49179428-49179447 None:intergenic 55.0%
CATGGCAACAAGAGGGCGAT+TGG + chr4_1:49179426-49179445 Msa0552490:CDS 55.0%
! GACGTTCTGGGCAAGATGCA+GGG + chr4_1:49179674-49179693 Msa0552490:CDS 55.0%
! ACGTTCTGGGCAAGATGCAG+GGG + chr4_1:49179675-49179694 Msa0552490:CDS 55.0%
GGTGCAACTGCAGGGCTATT+TGG + chr4_1:49179715-49179734 Msa0552490:CDS 55.0%
TGAGGACAAGGACCAGAACC+CGG - chr4_1:49180422-49180441 None:intergenic 55.0%
GGACCAAGATTGTGCACCGT+TGG + chr4_1:49180533-49180552 Msa0552490:intron 55.0%
AAACAAGCCTGGGCACAACG+AGG + chr4_1:49180860-49180879 Msa0552490:CDS 55.0%
AACAAGCCTGGGCACAACGA+GGG + chr4_1:49180861-49180880 Msa0552490:CDS 55.0%
AGCGGTAGGATAGGACCAAG+TGG + chr4_1:49181144-49181163 Msa0552490:intron 55.0%
TTAAACAGAGGAGGGCGAGC+TGG + chr4_1:49182481-49182500 Msa0552490:intron 55.0%
GAAACTGCACGAGTGCTTCC+TGG + chr4_1:49182711-49182730 Msa0552490:CDS 55.0%
GGTTGGGAGGTTGAGGATCT+AGG + chr4_1:49182747-49182766 Msa0552490:CDS 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG - chr4_1:49183245-49183264 None:intergenic 55.0%
CTGACGTGGCACCCTAAATG+AGG + chr4_1:49183124-49183143 Msa0552490:intron 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr4_1:49183245-49183264 Msa0552490:intron 55.0%
CTTGCCGGACTCGAGTTTGA+TGG + chr4_1:49183432-49183451 Msa0552490:intron 55.0%
TTAACCAGTGCCCCTGGAGC+AGG + chr4_1:49177856-49177875 Msa0552490:five_prime_UTR 60.0%
TAACCAGTGCCCCTGGAGCA+GGG + chr4_1:49177857-49177876 Msa0552490:five_prime_UTR 60.0%
TGAGGATCCACATGCTGCCG+TGG + chr4_1:49179196-49179215 Msa0552490:CDS 60.0%
!! TGGTACTGACGTCGGACCAG+AGG + chr4_1:49179337-49179356 Msa0552490:CDS 60.0%
!! CAACGCCAGAAGCACCAGCA+GGG - chr4_1:49179630-49179649 None:intergenic 60.0%
! GGACGTTCTGGGCAAGATGC+AGG + chr4_1:49179673-49179692 Msa0552490:CDS 60.0%
! CGTTCTGGGCAAGATGCAGG+GGG + chr4_1:49179676-49179695 Msa0552490:CDS 60.0%
! GGGCAAGATGCAGGGGGTAT+TGG + chr4_1:49179682-49179701 Msa0552490:CDS 60.0%
CTGCAGTTGCACCAGCTGGA+CGG - chr4_1:49179708-49179727 None:intergenic 60.0%
GTCCAGCTGGTGCAACTGCA+GGG + chr4_1:49179707-49179726 Msa0552490:CDS 60.0%
GTTAACCTCTCCCCGGGTTC+TGG + chr4_1:49180407-49180426 Msa0552490:intron 60.0%
AGGACAAGGACCAGAACCCG+GGG - chr4_1:49180420-49180439 None:intergenic 60.0%
GAGGACAAGGACCAGAACCC+GGG - chr4_1:49180421-49180440 None:intergenic 60.0%
GGCACAACGAGGGTGGTGTA+AGG + chr4_1:49180871-49180890 Msa0552490:CDS 60.0%
GCACGAGTGCTTCCTGGTTC+CGG + chr4_1:49182717-49182736 Msa0552490:CDS 60.0%
CACGAGTGCTTCCTGGTTCC+GGG + chr4_1:49182718-49182737 Msa0552490:CDS 60.0%
! TAGGGTGCCACGTCAGCGTT+GGG - chr4_1:49183120-49183139 None:intergenic 60.0%
! TTAGGGTGCCACGTCAGCGT+TGG - chr4_1:49183121-49183140 None:intergenic 60.0%
!! TTGGCAGTTTTGGCCCCCCA+AGG - chr4_1:49183182-49183201 None:intergenic 60.0%
GAGGAGGGGGATACCGCAGA+CGG + chr4_1:49178000-49178019 Msa0552490:five_prime_UTR 65.0%
ACAGCAGCCACGGCAGCATG+TGG - chr4_1:49179206-49179225 None:intergenic 65.0%
CTGCCGTGGCTGCTGTTGAG+TGG + chr4_1:49179210-49179229 Msa0552490:CDS 65.0%
CGGGGTGCGTGTAATCGCTG+TGG + chr4_1:49179595-49179614 Msa0552490:CDS 65.0%
! TGTGGAAGTGCACGCCCTGC+TGG + chr4_1:49179613-49179632 Msa0552490:CDS 65.0%
!! GCAACGCCAGAAGCACCAGC+AGG - chr4_1:49179631-49179650 None:intergenic 65.0%
GCTGGTGCTTCTGGCGTTGC+AGG + chr4_1:49179631-49179650 Msa0552490:CDS 65.0%
GGTGCTTCTGGCGTTGCAGG+AGG + chr4_1:49179634-49179653 Msa0552490:CDS 65.0%
GCTTCTGGCGTTGCAGGAGG+AGG + chr4_1:49179637-49179656 Msa0552490:CDS 65.0%
TCTGGCGTTGCAGGAGGAGG+TGG + chr4_1:49179640-49179659 Msa0552490:CDS 65.0%
CGTCCAGCTGGTGCAACTGC+AGG + chr4_1:49179706-49179725 Msa0552490:CDS 65.0%
AGCCCTGCAGTTGCACCAGC+TGG - chr4_1:49179712-49179731 None:intergenic 65.0%
AAGGACCAGAACCCGGGGAG+AGG - chr4_1:49180415-49180434 None:intergenic 65.0%
AAGCCTGGGCACAACGAGGG+TGG + chr4_1:49180864-49180883 Msa0552490:CDS 65.0%
ACACCACCCTCGTTGTGCCC+AGG - chr4_1:49180870-49180889 None:intergenic 65.0%
AACAGAGGAGGGCGAGCTGG+AGG + chr4_1:49182484-49182503 Msa0552490:intron 65.0%
!! TGGTTCCGGGCGTGCTGGTT+GGG + chr4_1:49182731-49182750 Msa0552490:CDS 65.0%
AACCTCCCAACCAGCACGCC+CGG - chr4_1:49182739-49182758 None:intergenic 65.0%
!! GCGTGCTGGTTGGGAGGTTG+AGG + chr4_1:49182740-49182759 Msa0552490:CDS 65.0%
TTTGGCCCCCAACGCTGACG+TGG + chr4_1:49183110-49183129 Msa0552490:intron 65.0%
! AGGGTGCCACGTCAGCGTTG+GGG - chr4_1:49183119-49183138 None:intergenic 65.0%
! TTGCCCTGCTCCAGGGGCAC+TGG - chr4_1:49177863-49177882 None:intergenic 70.0%
GTGCCCCTGGAGCAGGGCAA+TGG + chr4_1:49177863-49177882 Msa0552490:five_prime_UTR 70.0%
GCACGCCCTGCTGGTGCTTC+TGG + chr4_1:49179622-49179641 Msa0552490:CDS 70.0%
GTTGCAGGAGGAGGTGGCCG+TGG + chr4_1:49179646-49179665 Msa0552490:CDS 70.0%
AGGAGGAGGTGGCCGTGGCA+GGG + chr4_1:49179651-49179670 Msa0552490:CDS 70.0%
GCCGTGGCAGGGGACGTTCT+GGG + chr4_1:49179662-49179681 Msa0552490:CDS 70.0%
GCCCAGAACGTCCCCTGCCA+CGG - chr4_1:49179666-49179685 None:intergenic 70.0%
!! GGGGGTATTGGCCGTCCAGC+TGG + chr4_1:49179694-49179713 Msa0552490:CDS 70.0%
CTTCCTGGTTCCGGGCGTGC+TGG + chr4_1:49182726-49182745 Msa0552490:CDS 70.0%
CAACCAGCACGCCCGGAACC+AGG - chr4_1:49182732-49182751 None:intergenic 70.0%
! CTGGTTCCGGGCGTGCTGGT+TGG + chr4_1:49182730-49182749 Msa0552490:CDS 70.0%
!! TTCCGGGCGTGCTGGTTGGG+AGG + chr4_1:49182734-49182753 Msa0552490:CDS 70.0%
! GGGTGCCACGTCAGCGTTGG+GGG - chr4_1:49183118-49183137 None:intergenic 70.0%
CAGGAGGAGGTGGCCGTGGC+AGG + chr4_1:49179650-49179669 Msa0552490:CDS 75.0%
GGAGGAGGTGGCCGTGGCAG+GGG + chr4_1:49179652-49179671 Msa0552490:CDS 75.0%
GGCCGTGGCAGGGGACGTTC+TGG + chr4_1:49179661-49179680 Msa0552490:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49177633 49184239 49177633 ID=Msa0552490;Name=Msa0552490
chr4_1 mRNA 49177633 49184239 49177633 ID=Msa0552490-mRNA-1;Parent=Msa0552490;Name=Msa0552490-mRNA-1;_AED=0.23;_eAED=0.23;_QI=538|0.85|0.87|1|0.71|0.62|8|325|392
chr4_1 exon 49177633 49178121 49177633 ID=Msa0552490-mRNA-1:exon:13627;Parent=Msa0552490-mRNA-1
chr4_1 exon 49178740 49178908 49178740 ID=Msa0552490-mRNA-1:exon:13628;Parent=Msa0552490-mRNA-1
chr4_1 exon 49179110 49179465 49179110 ID=Msa0552490-mRNA-1:exon:13629;Parent=Msa0552490-mRNA-1
chr4_1 exon 49179570 49179761 49179570 ID=Msa0552490-mRNA-1:exon:13630;Parent=Msa0552490-mRNA-1
chr4_1 exon 49180809 49180892 49180809 ID=Msa0552490-mRNA-1:exon:13631;Parent=Msa0552490-mRNA-1
chr4_1 exon 49182489 49182567 49182489 ID=Msa0552490-mRNA-1:exon:13632;Parent=Msa0552490-mRNA-1
chr4_1 exon 49182642 49182773 49182642 ID=Msa0552490-mRNA-1:exon:13633;Parent=Msa0552490-mRNA-1
chr4_1 exon 49183699 49184239 49183699 ID=Msa0552490-mRNA-1:exon:13634;Parent=Msa0552490-mRNA-1
chr4_1 five_prime_UTR 49177633 49178121 49177633 ID=Msa0552490-mRNA-1:five_prime_utr;Parent=Msa0552490-mRNA-1
chr4_1 five_prime_UTR 49178740 49178788 49178740 ID=Msa0552490-mRNA-1:five_prime_utr;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49178789 49178908 49178789 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49179110 49179465 49179110 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49179570 49179761 49179570 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49180809 49180892 49180809 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49182489 49182567 49182489 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49182642 49182773 49182642 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 CDS 49183699 49183914 49183699 ID=Msa0552490-mRNA-1:cds;Parent=Msa0552490-mRNA-1
chr4_1 three_prime_UTR 49183915 49184239 49183915 ID=Msa0552490-mRNA-1:three_prime_utr;Parent=Msa0552490-mRNA-1
Gene Sequence

>Msa0552490

ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTCTGCAACTTGCCTTATGGGACCGATGATAATATGTTGGCTGAATATTTTGGAACCATTGGAGTTATAAAGAAAGATAAACGTACAGGGAAACCTAAAATATGGTTATATCATGACAAAGAGACGAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGACCCGGTTGTTGCTGGTACTGACGTCGGACCAGAGGAAACTGAAAGTGATGTCGATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGGTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCGAATGTGAACTTTGCTTTTCGGGGTGCGTGTAATCGCTGTGGAAGTGCACGCCCTGCTGGTGCTTCTGGCGTTGCAGGAGGAGGTGGCCGTGGCAGGGGACGTTCTGGGCAAGATGCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGGCTATTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGTTAAAATGCAATATTTGCAATACAAACAAGCCTGGGCACAACGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATCGAAGAAACTAAACGTCGCAGGCGGCAAGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAACTGCACGAGTGCTTCCTGGTTCCGGGCGTGCTGGTTGGGAGGTTGAGGATCTAGGTAATGGATTGACAGAGATGCTACAGAAAAAAGCAGAGACAGAGGAAGAGAGTCAAGGGACCGTTATGATGGAGAGCAGAGAAACAGAGAGCATAACGAGGAGAGGCAAAGCAGTCGAAATAGAGAGAGGGACAGGGGAAGAGATTGAGACAGGGATTATGGACAGGAACGGGACCGAAGTAGACACCGATATTAAAAATAGCAGTAGAAGTGCATTCTGA
Protein sequence

>Msa0552490

MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGKPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIADPVVAGTDVGPEETESDVDGVNGRGRGQIDGSSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDAGGIGRPAGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSETARVLPGSGRAGWEVEDLGNGLTEMLQKKAETEEESQGTVMMESRETESITRRGKAVEIERGTGEEIETGIMDRNGTEVDTDIKNSSRSAF*