AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552930 MtrunA17_Chr4g0038491 98.837 258 1 1 1 258 1 256 0.0 506
Msa0552930 MtrunA17_Chr3g0145491 75.299 251 57 3 1 248 1 249 5.42e-126 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552930 AT2G16595.1 56.897 232 92 3 19 248 17 242 4.41e-89 265
Msa0552930 AT2G21160.1 60.581 241 87 2 23 258 20 257 1.78e-84 253
Msa0552930 AT2G21160.2 59.412 170 61 2 23 187 20 186 1.15e-64 200

Find 83 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTATGGGAAGATATT+AGG 0.172676 4_1:-49705089 Msa0552930:three_prime_UTR
TGGCTTCCTTCAACTCCTTC+TGG 0.233654 4_1:-49708796 Msa0552930:CDS
AGTTGCCCTCCTTGTCCTCC+TGG 0.292164 4_1:-49706447 Msa0552930:CDS
ATTATATCAATGGCTGAAAA+TGG 0.302791 4_1:+49705007 None:intergenic
ACAGACTAGAAACCTATATT+AGG 0.330285 4_1:+49705132 None:intergenic
TCTGTCTTTCTTGTTACTCT+TGG 0.333410 4_1:-49706470 Msa0552930:CDS
ATCGCTTCACCGTTCCTTCA+AGG 0.338911 4_1:-49708749 Msa0552930:intron
TGCAGTCAGTAAATTCTTGC+AGG 0.339537 4_1:-49706730 Msa0552930:intron
CTCCTGGGGCTATGGATTCA+TGG 0.339701 4_1:-49706431 Msa0552930:CDS
ATATTTATGGGAAGATATTA+GGG 0.346402 4_1:-49705088 Msa0552930:three_prime_UTR
CTAGTTCCAACTTCAACTTT+AGG 0.354589 4_1:+49705676 None:intergenic
CTTGAATGTTGTTGCAATCA+AGG 0.356465 4_1:-49707439 Msa0552930:CDS
CCCAAGACTTTGATAGCATT+GGG 0.358768 4_1:-49707889 Msa0552930:CDS
ACACTTATTGTATCAATTCC+TGG 0.359626 4_1:+49707851 None:intergenic
TACCAAAGCACCTTCTTTAA+CGG 0.376523 4_1:-49706536 Msa0552930:CDS
GTTGCCCTCCTTGTCCTCCT+GGG 0.379518 4_1:-49706446 Msa0552930:CDS
TCCTTGTCCTCCTGGGGCTA+TGG 0.384359 4_1:-49706439 Msa0552930:CDS
TTCAATTAATATTATATCAA+TGG 0.392531 4_1:+49704997 None:intergenic
TAGATATTACTACCTTAGAT+AGG 0.392887 4_1:+49706396 None:intergenic
ACTGAAGAAGGAAGTGATAT+TGG 0.393457 4_1:-49707929 Msa0552930:CDS
TTGATATAATATTAATTGAA+TGG 0.401289 4_1:-49704994 Msa0552930:three_prime_UTR
TCAAATACAAAACCTATCTA+AGG 0.403503 4_1:-49706408 Msa0552930:intron
TTACTGACTGCAAATATGTA+TGG 0.407567 4_1:+49706741 None:intergenic
GAATGGTTTAGATCTATTGA+TGG 0.408893 4_1:-49704977 None:intergenic
TTCATCGTTGAAAATTCATT+CGG 0.410426 4_1:-49708843 Msa0552930:five_prime_UTR
GTTGAAGGAAGCCATGGTTA+TGG 0.412051 4_1:+49708805 None:intergenic
CGTGTGCGGATTCCTAATAT+AGG 0.413150 4_1:-49705144 Msa0552930:three_prime_UTR
CCCCAATGCTATCAAAGTCT+TGG 0.420198 4_1:+49707888 None:intergenic
GCCCAAGACTTTGATAGCAT+TGG 0.431971 4_1:-49707890 Msa0552930:CDS
AACTAACAGGGATCTGAGTT+AGG 0.444874 4_1:-49705258 Msa0552930:three_prime_UTR
TGTTCAAAATCTTACTGCTC+AGG 0.451766 4_1:-49707382 Msa0552930:intron
TGCCGTTAAAGAAGGTGCTT+TGG 0.453623 4_1:+49706534 None:intergenic
TGTAGAGAAGCAAACCTTGA+AGG 0.473427 4_1:+49708735 None:intergenic
ATTGTATCAATTCCTGGAGC+AGG 0.479754 4_1:+49707857 None:intergenic
GAAAATCCAGAAGGAGTTGA+AGG 0.482193 4_1:+49708790 None:intergenic
ACAAGCAGACGATGATCAAC+AGG 0.483999 4_1:+49707402 None:intergenic
CCCAATGCTATCAAAGTCTT+GGG 0.484284 4_1:+49707889 None:intergenic
TTAAAGAAGGTGCTTTGGTA+TGG 0.496640 4_1:+49706539 None:intergenic
TGAATACAATGCAGTGGTTA+CGG 0.500104 4_1:-49707720 Msa0552930:intron
AAAGTAGCTTGCGCTGAGGC+TGG 0.500206 4_1:+49706765 None:intergenic
TACAATGCAGTGGTTACGGC+TGG 0.500546 4_1:-49707716 Msa0552930:intron
GGAAGTGATATTGGCGTCGT+TGG 0.517650 4_1:-49707920 Msa0552930:CDS
TTCAACAGTGCCGTTAAAGA+AGG 0.525152 4_1:+49706526 None:intergenic
AGGGCTCCTAAAGTTGAAGT+TGG 0.526588 4_1:-49705682 Msa0552930:CDS
ACTTTAAACTACAACACAAA+AGG 0.527968 4_1:+49705326 None:intergenic
ACTGTTGAAGTTGTTGAAGC+TGG 0.536900 4_1:-49706512 Msa0552930:CDS
AAAAGCTCAACCTCATTGGA+AGG 0.541243 4_1:+49705291 None:intergenic
TCCATAGCCCCAGGAGGACA+AGG 0.542721 4_1:+49706438 None:intergenic
TTCAACAGACGAATGGCTAC+AGG 0.544409 4_1:-49705641 Msa0552930:intron
TACTGACTGCAAATATGTAT+GGG 0.546293 4_1:+49706742 None:intergenic
CTTTCTCAAACTAATTAACA+TGG 0.552074 4_1:+49705380 None:intergenic
TGAGAAAGCACAAGGAATTG+TGG 0.552335 4_1:-49705365 Msa0552930:three_prime_UTR
GCTAGGTGCCAGTCAGATGA+AGG 0.552570 4_1:-49707965 Msa0552930:CDS
GATTGCAACAACATTCAAGC+TGG 0.561649 4_1:+49707443 None:intergenic
GACCATGAATCCATAGCCCC+AGG 0.564710 4_1:+49706429 None:intergenic
TTGCCCTCCTTGTCCTCCTG+GGG 0.570226 4_1:-49706445 Msa0552930:CDS
AACAGGGATCTGAGTTAGGA+AGG 0.571431 4_1:-49705254 Msa0552930:three_prime_UTR
GTGGATACTACTACTGAAGA+AGG 0.575203 4_1:-49707941 Msa0552930:CDS
TGATATTGGCGTCGTTGGTG+AGG 0.582105 4_1:-49707915 Msa0552930:CDS
GAAGACACAGAGCTGCTTGT+GGG 0.585122 4_1:-49707692 Msa0552930:CDS
TATCCACACCTTCATCTGAC+TGG 0.588486 4_1:+49707957 None:intergenic
TAAACTACAACACAAAAGGC+AGG 0.598642 4_1:+49705330 None:intergenic
AGAAGCAAACCTTGAAGGAA+CGG 0.604617 4_1:+49708740 None:intergenic
AATTAGTTTGAGAAAGCACA+AGG 0.607761 4_1:-49705373 Msa0552930:three_prime_UTR
AAGGAAGCCATGGTTATGGT+TGG 0.614728 4_1:+49708809 None:intergenic
GAAGGAGTTGAAGGAAGCCA+TGG 0.615324 4_1:+49708799 None:intergenic
AGCGAGAGAGAAAATCCAGA+AGG 0.615896 4_1:+49708781 None:intergenic
AAAGCTCAACCTCATTGGAA+GGG 0.619858 4_1:+49705292 None:intergenic
TAACACACCAACCATAACCA+TGG 0.624873 4_1:-49708816 Msa0552930:exon
CCGACAAGATCAAAACTCCC+AGG 0.627060 4_1:+49706590 None:intergenic
CAGATGCTTCAACAGACGAA+TGG 0.628599 4_1:-49705648 Msa0552930:CDS
AGAAGACACAGAGCTGCTTG+TGG 0.639497 4_1:-49707693 Msa0552930:CDS
GTTACATCTCTAGTCATGTG+TGG 0.642453 4_1:+49705406 None:intergenic
TAGCCCCAGGAGGACAAGGA+GGG 0.644555 4_1:+49706442 None:intergenic
GTTGAAGTTGTTGAAGCTGG+TGG 0.646915 4_1:-49706509 Msa0552930:CDS
GTGCCAGTCAGATGAAGGTG+TGG 0.647403 4_1:-49707960 Msa0552930:CDS
TTTATGGGAAGATATTAGGG+TGG 0.658062 4_1:-49705085 Msa0552930:three_prime_UTR
GAAGGAACGGTGAAGCGATG+AGG 0.662056 4_1:+49708753 None:intergenic
CCAAGACTTTGATAGCATTG+GGG 0.668986 4_1:-49707888 Msa0552930:CDS
ATAGCCCCAGGAGGACAAGG+AGG 0.677509 4_1:+49706441 None:intergenic
GCAGACGATGATCAACAGGA+AGG 0.726473 4_1:+49707406 None:intergenic
CATGAATCCATAGCCCCAGG+AGG 0.732654 4_1:+49706432 None:intergenic
TGGGAAAGTAGCTTGCGCTG+AGG 0.756303 4_1:+49706761 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTGGTTTTTTATTT+TGG - chr4_1:49705272-49705291 Msa0552930:three_prime_UTR 10.0%
!!! AAAAATTGGTTTTTTATTTT+GGG - chr4_1:49705273-49705292 Msa0552930:three_prime_UTR 10.0%
!!! TTATTTTATTTTTTGATCAA+AGG - chr4_1:49705422-49705441 Msa0552930:three_prime_UTR 10.0%
!!! TATTTTATTTTTTGATCAAA+GGG - chr4_1:49705423-49705442 Msa0552930:three_prime_UTR 10.0%
!!! AGTTTTTTTTTTTTTTTTTG+AGG - chr4_1:49705475-49705494 Msa0552930:CDS 10.0%
!! TTCAATTAATATTATATCAA+TGG + chr4_1:49708845-49708864 None:intergenic 10.0%
!! TTGATATAATATTAATTGAA+TGG - chr4_1:49708845-49708864 Msa0552930:five_prime_UTR 10.0%
!!! AAAATTGGTTTTTTATTTTG+GGG - chr4_1:49705274-49705293 Msa0552930:three_prime_UTR 15.0%
!!! AAAGATCACATTTTTAATAT+TGG - chr4_1:49705392-49705411 Msa0552930:three_prime_UTR 15.0%
!!! AAGATCACATTTTTAATATT+GGG - chr4_1:49705393-49705412 Msa0552930:three_prime_UTR 15.0%
!!! TATTTTGATCTATTTTTGAA+AGG - chr4_1:49705501-49705520 Msa0552930:intron 15.0%
!!! CTTTTAATATAGATTTCAAA+TGG - chr4_1:49705556-49705575 Msa0552930:intron 15.0%
!!! TTACATTTTGCAAAATTTTT+TGG + chr4_1:49706018-49706037 None:intergenic 15.0%
!!! AAAAAATTTTGCAAAATGTA+AGG - chr4_1:49706017-49706036 Msa0552930:intron 15.0%
!! AAAGAAAGTAAAAAAAGAAA+AGG + chr4_1:49706290-49706309 None:intergenic 15.0%
!!! TTCTTTTTTTACTTTCTTTT+TGG - chr4_1:49706291-49706310 Msa0552930:intron 15.0%
!! GTATTCAATTTACAAAATTA+AGG - chr4_1:49707584-49707603 Msa0552930:intron 15.0%
!! AAAATAGAAAATATTTCACA+AGG + chr4_1:49707619-49707638 None:intergenic 15.0%
!! TATATTATCTCTATACTTAT+TGG - chr4_1:49708239-49708258 Msa0552930:intron 15.0%
!! AAAATAAAAAGGAAGCAATT+GGG + chr4_1:49705204-49705223 None:intergenic 20.0%
!! AAAAATAAAAAGGAAGCAAT+TGG + chr4_1:49705205-49705224 None:intergenic 20.0%
!! AATGCATGCAAAAAATAAAA+AGG + chr4_1:49705215-49705234 None:intergenic 20.0%
!!! TAAATCTGTATCTTTTTAGA+TGG - chr4_1:49705721-49705740 Msa0552930:intron 20.0%
!! ATGAACATCTAAATTAAACT+TGG - chr4_1:49706493-49706512 Msa0552930:CDS 20.0%
!! ATTAAAACTAAGTCTTTCAA+GGG + chr4_1:49706701-49706720 None:intergenic 20.0%
!! TCAAATAATAGCAAATTATC+TGG + chr4_1:49707484-49707503 None:intergenic 20.0%
!!! TTTGCTAATTTTTCTCATAA+TGG - chr4_1:49707522-49707541 Msa0552930:intron 20.0%
!!! TTTTTTTTTACACAGTAAAC+AGG - chr4_1:49707864-49707883 Msa0552930:CDS 20.0%
!!! TTTTTTTTACACAGTAAACA+GGG - chr4_1:49707865-49707884 Msa0552930:CDS 20.0%
!!! TATTTTATCAGAAAACAAAG+AGG - chr4_1:49708137-49708156 Msa0552930:intron 20.0%
!!! ATTTTATCAGAAAACAAAGA+GGG - chr4_1:49708138-49708157 Msa0552930:intron 20.0%
!!! TTTTCTAAGAAAAAACTAAC+AGG - chr4_1:49708568-49708587 Msa0552930:intron 20.0%
!!! TTTCTAAGAAAAAACTAACA+GGG - chr4_1:49708569-49708588 Msa0552930:intron 20.0%
!!! ATTCTCTGGTTTTATATTTA+TGG - chr4_1:49708738-49708757 Msa0552930:intron 20.0%
!!! TTCTCTGGTTTTATATTTAT+GGG - chr4_1:49708739-49708758 Msa0552930:intron 20.0%
!! TATATTTATGGGAAGATATT+AGG - chr4_1:49708750-49708769 Msa0552930:CDS 20.0%
!! ATATTTATGGGAAGATATTA+GGG - chr4_1:49708751-49708770 Msa0552930:CDS 20.0%
!!! ACAAAAACATACTTTTCAAA+GGG + chr4_1:49708811-49708830 None:intergenic 20.0%
!!! TACAAAAACATACTTTTCAA+AGG + chr4_1:49708812-49708831 None:intergenic 20.0%
! TTCATCGTTGAAAATTCATT+CGG - chr4_1:49704996-49705015 Msa0552930:three_prime_UTR 25.0%
! CAAATGGATCATAGATAAAA+CGG + chr4_1:49705144-49705163 None:intergenic 25.0%
! TAACTTCAAACTAGTAATGT+AGG + chr4_1:49705362-49705381 None:intergenic 25.0%
! AATGGAATTCCTAATTTAAG+TGG - chr4_1:49705574-49705593 Msa0552930:intron 25.0%
! TATTTGCAACCACTTAAATT+AGG + chr4_1:49705586-49705605 None:intergenic 25.0%
! TAACGGTAATTCAATCATAT+TGG - chr4_1:49706179-49706198 Msa0552930:intron 25.0%
! GATTAAAACTAAGTCTTTCA+AGG + chr4_1:49706702-49706721 None:intergenic 25.0%
! ATATATCCTAGCAAAATCTT+TGG + chr4_1:49706871-49706890 None:intergenic 25.0%
!!! TGATTTTGCATTTTTTGTGA+AGG - chr4_1:49706929-49706948 Msa0552930:intron 25.0%
!!! CATTTTTTGTGAAGGAAATA+CGG - chr4_1:49706937-49706956 Msa0552930:intron 25.0%
! TCAAATACAAAACCTATCTA+AGG - chr4_1:49707431-49707450 Msa0552930:CDS 25.0%
! TAGATATTACTACCTTAGAT+AGG + chr4_1:49707446-49707465 None:intergenic 25.0%
! TTAGCAAATTCAAAATGTGA+AGG + chr4_1:49707510-49707529 None:intergenic 25.0%
!!! TTTTCTCATAATGGTTTGTT+TGG - chr4_1:49707531-49707550 Msa0552930:intron 25.0%
! AATATTTCACAAGGTAAACA+GGG + chr4_1:49707610-49707629 None:intergenic 25.0%
! AAATATTTCACAAGGTAAAC+AGG + chr4_1:49707611-49707630 None:intergenic 25.0%
!!! GAACAAATATGTGCATTTTT+TGG - chr4_1:49707705-49707724 Msa0552930:CDS 25.0%
! GATGAAGGAAATATTAAAGA+CGG + chr4_1:49708086-49708105 None:intergenic 25.0%
! ATATGAAAAACTGAAGAACA+TGG + chr4_1:49708268-49708287 None:intergenic 25.0%
! CTTTCTCAAACTAATTAACA+TGG + chr4_1:49708462-49708481 None:intergenic 25.0%
! ACTTTAAACTACAACACAAA+AGG + chr4_1:49708516-49708535 None:intergenic 25.0%
!!! TTTTTTTTGTTTATCGTGTG+CGG - chr4_1:49708681-49708700 Msa0552930:intron 25.0%
!! CAAAAACATACTTTTCAAAG+GGG + chr4_1:49708810-49708829 None:intergenic 25.0%
! ATTATATCAATGGCTGAAAA+TGG + chr4_1:49708835-49708854 None:intergenic 25.0%
! TTTTTATGCTATGTGCATGA+TGG - chr4_1:49705819-49705838 Msa0552930:intron 30.0%
ACACTTATTGTATCAATTCC+TGG + chr4_1:49705991-49706010 None:intergenic 30.0%
TTTGTATGAATACAATGCAG+TGG - chr4_1:49706113-49706132 Msa0552930:intron 30.0%
CTTGTGGGTGTAAAAAATAA+CGG - chr4_1:49706162-49706181 Msa0552930:intron 30.0%
TTATTTCGTGTGCTAATAAC+AGG - chr4_1:49706368-49706387 Msa0552930:intron 30.0%
GAAGATTAAGATTGACTACA+AGG + chr4_1:49706583-49706602 None:intergenic 30.0%
TGAAAGCCATTTATACGAAA+CGG - chr4_1:49706618-49706637 Msa0552930:intron 30.0%
AAATTCCCGTTTCGTATAAA+TGG + chr4_1:49706627-49706646 None:intergenic 30.0%
! TGCAATCTAATGCTCATTTT+TGG + chr4_1:49706819-49706838 None:intergenic 30.0%
TTTGCTAGGATATATGATGT+CGG - chr4_1:49706876-49706895 Msa0552930:intron 30.0%
! TATTGTGTACTGTCATTTAC+TGG + chr4_1:49706998-49707017 None:intergenic 30.0%
!!! CTTTTTTTCTTTCTGATTGC+AGG - chr4_1:49707031-49707050 Msa0552930:intron 30.0%
! TACTGACTGCAAATATGTAT+GGG + chr4_1:49707100-49707119 None:intergenic 30.0%
! TTACTGACTGCAAATATGTA+TGG + chr4_1:49707101-49707120 None:intergenic 30.0%
GAGATCAATGAGTATATGTA+TGG + chr4_1:49707199-49707218 None:intergenic 30.0%
! AAACGTTTTCCAATACCAAA+AGG - chr4_1:49707981-49708000 Msa0552930:intron 30.0%
AATCAAACGTGAGAAGTTTA+GGG + chr4_1:49708007-49708026 None:intergenic 30.0%
AAATCAAACGTGAGAAGTTT+AGG + chr4_1:49708008-49708027 None:intergenic 30.0%
TAAACTTCTCACGTTTGATT+TGG - chr4_1:49708007-49708026 Msa0552930:intron 30.0%
!! TTTTCTTTAAAAGCACAAGC+TGG + chr4_1:49708047-49708066 None:intergenic 30.0%
! AATTAGTTTGAGAAAGCACA+AGG - chr4_1:49708466-49708485 Msa0552930:intron 30.0%
!! AGGATAGAACTTTTGAAAAG+TGG - chr4_1:49708605-49708624 Msa0552930:intron 30.0%
ACAGACTAGAAACCTATATT+AGG + chr4_1:49708710-49708729 None:intergenic 30.0%
GCTTCTCTACATTATAGATC+TGG - chr4_1:49705116-49705135 Msa0552930:three_prime_UTR 35.0%
TAAAAAGGAAGCAATTGGGT+CGG + chr4_1:49705200-49705219 None:intergenic 35.0%
CATGCATTGTGATCTTTGAT+CGG - chr4_1:49705227-49705246 Msa0552930:three_prime_UTR 35.0%
!!! TGGGGTATTTTGATCTTTGT+TGG - chr4_1:49705292-49705311 Msa0552930:three_prime_UTR 35.0%
GCATTGTTTAATCTAGTGCA+TGG - chr4_1:49705445-49705464 Msa0552930:exon 35.0%
TTAAGTGGTTGCAAATACTG+AGG - chr4_1:49705589-49705608 Msa0552930:intron 35.0%
ACTGAGGTAGAGTTATTTGA+AGG - chr4_1:49705605-49705624 Msa0552930:intron 35.0%
!!! TGTTATTTTACTTGCCCTGT+CGG - chr4_1:49705770-49705789 Msa0552930:intron 35.0%
! GTAATTTGCAAAATCCGACA+GGG + chr4_1:49705787-49705806 None:intergenic 35.0%
! AGTAATTTGCAAAATCCGAC+AGG + chr4_1:49705788-49705807 None:intergenic 35.0%
!! TGCATGATGGTTTTTGATTG+TGG - chr4_1:49705832-49705851 Msa0552930:intron 35.0%
!! TTTTCCATTTGCTAGTTGCT+AGG - chr4_1:49705857-49705876 Msa0552930:intron 35.0%
ACTGAAGAAGGAAGTGATAT+TGG - chr4_1:49705910-49705929 Msa0552930:intron 35.0%
TGAATACAATGCAGTGGTTA+CGG - chr4_1:49706119-49706138 Msa0552930:intron 35.0%
CTTGAATGTTGTTGCAATCA+AGG - chr4_1:49706400-49706419 Msa0552930:intron 35.0%
TGTTCAAAATCTTACTGCTC+AGG - chr4_1:49706457-49706476 Msa0552930:CDS 35.0%
GAAAGCCATTTATACGAAAC+GGG - chr4_1:49706619-49706638 Msa0552930:intron 35.0%
AATCTACACGTGACAAAGAT+TGG - chr4_1:49706718-49706737 Msa0552930:intron 35.0%
!!! TAATGCTCATTTTTGGCACA+GGG + chr4_1:49706812-49706831 None:intergenic 35.0%
! AAGTAGCCAAAGATTTTGCT+AGG - chr4_1:49706862-49706881 Msa0552930:intron 35.0%
ACATATAGAACTCCTTCAGA+TGG + chr4_1:49706902-49706921 None:intergenic 35.0%
! TGATTGCAGGTTTTCAACAA+TGG - chr4_1:49707044-49707063 Msa0552930:intron 35.0%
!! TTAAAGAAGGTGCTTTGGTA+TGG + chr4_1:49707303-49707322 None:intergenic 35.0%
! TACCAAAGCACCTTCTTTAA+CGG - chr4_1:49707303-49707322 Msa0552930:intron 35.0%
TCTGTCTTTCTTGTTACTCT+TGG - chr4_1:49707369-49707388 Msa0552930:intron 35.0%
GCAAATTCAAAATGTGAAGG+CGG + chr4_1:49707507-49707526 None:intergenic 35.0%
! GGTTTGTTTGGTTTATGAAG+AGG - chr4_1:49707543-49707562 Msa0552930:intron 35.0%
AGAAGATGAAATGCTAGCTA+GGG + chr4_1:49707750-49707769 None:intergenic 35.0%
GAAGGAAATATTAAAGACGG+AGG + chr4_1:49708083-49708102 None:intergenic 35.0%
CTAGTTCCAACTTCAACTTT+AGG + chr4_1:49708166-49708185 None:intergenic 35.0%
! AGATGTCTGGTTTATGCTAT+AGG + chr4_1:49708296-49708315 None:intergenic 35.0%
GATATTTCGTTTCAGATGTC+TGG + chr4_1:49708309-49708328 None:intergenic 35.0%
TAAACTACAACACAAAAGGC+AGG + chr4_1:49708512-49708531 None:intergenic 35.0%
! TTTTTCTTTCCCTTCCAATG+AGG - chr4_1:49708538-49708557 Msa0552930:intron 35.0%
TAGAAAAAGCTCAACCTCAT+TGG + chr4_1:49708555-49708574 None:intergenic 35.0%
! GTCTGTGTTTTATCATTCTC+TGG - chr4_1:49708724-49708743 Msa0552930:intron 35.0%
TTTATGGGAAGATATTAGGG+TGG - chr4_1:49708754-49708773 Msa0552930:CDS 35.0%
TAACACACCAACCATAACCA+TGG - chr4_1:49705023-49705042 Msa0552930:three_prime_UTR 40.0%
GAAAATCCAGAAGGAGTTGA+AGG + chr4_1:49705052-49705071 None:intergenic 40.0%
AGAAGCAAACCTTGAAGGAA+CGG + chr4_1:49705102-49705121 None:intergenic 40.0%
TGTAGAGAAGCAAACCTTGA+AGG + chr4_1:49705107-49705126 None:intergenic 40.0%
CATGCAGAAAACGAAGCAAA+TGG + chr4_1:49705160-49705179 None:intergenic 40.0%
CAAACTAGTAATGTAGGTGC+AGG + chr4_1:49705356-49705375 None:intergenic 40.0%
TGGAAGCTTGATTCAGCATT+TGG - chr4_1:49705741-49705760 Msa0552930:intron 40.0%
GTGGATACTACTACTGAAGA+AGG - chr4_1:49705898-49705917 Msa0552930:intron 40.0%
CCCAATGCTATCAAAGTCTT+GGG + chr4_1:49705953-49705972 None:intergenic 40.0%
! CCCAAGACTTTGATAGCATT+GGG - chr4_1:49705950-49705969 Msa0552930:intron 40.0%
! CCAAGACTTTGATAGCATTG+GGG - chr4_1:49705951-49705970 Msa0552930:intron 40.0%
ATTGTATCAATTCCTGGAGC+AGG + chr4_1:49705985-49706004 None:intergenic 40.0%
AATGTAAGGATCGTTCTGTC+TGG - chr4_1:49706031-49706050 Msa0552930:intron 40.0%
AAAGCTTGAAATCACAGTGC+TGG + chr4_1:49706218-49706237 None:intergenic 40.0%
GATTGCAACAACATTCAAGC+TGG + chr4_1:49706399-49706418 None:intergenic 40.0%
CTTACTGCTCAGGTAGTAAT+TGG - chr4_1:49706467-49706486 Msa0552930:CDS 40.0%
TTTCATATCCTCCTGGAAAG+AGG - chr4_1:49706644-49706663 Msa0552930:intron 40.0%
TTACTATCCAACCTCTTTCC+AGG + chr4_1:49706658-49706677 None:intergenic 40.0%
TAAAAGCCATCTCCTACAGA+TGG + chr4_1:49706752-49706771 None:intergenic 40.0%
!!! CTAATGCTCATTTTTGGCAC+AGG + chr4_1:49706813-49706832 None:intergenic 40.0%
GTCATTTACTGGATCAGAAC+AGG + chr4_1:49706987-49707006 None:intergenic 40.0%
TGCAGTCAGTAAATTCTTGC+AGG - chr4_1:49707109-49707128 Msa0552930:intron 40.0%
! AGGTATTGCCATTACCTTGA+AGG - chr4_1:49707129-49707148 Msa0552930:intron 40.0%
ACTAAAAGCAGTTGCCTTCA+AGG + chr4_1:49707146-49707165 None:intergenic 40.0%
! TTCAACAGTGCCGTTAAAGA+AGG + chr4_1:49707316-49707335 None:intergenic 40.0%
ACTGTTGAAGTTGTTGAAGC+TGG - chr4_1:49707327-49707346 Msa0552930:intron 40.0%
GAGAAGATGAAATGCTAGCT+AGG + chr4_1:49707751-49707770 None:intergenic 40.0%
TTCTCTTCTCTCGATCACAA+TGG - chr4_1:49707771-49707790 Msa0552930:intron 40.0%
!! AGTTTAGGGCCTTTTGGTAT+TGG + chr4_1:49707993-49708012 None:intergenic 40.0%
GCAAACACGAGAATATCAGA+GGG + chr4_1:49708108-49708127 None:intergenic 40.0%
AGCAAACACGAGAATATCAG+AGG + chr4_1:49708109-49708128 None:intergenic 40.0%
TTTGCCTTGTATTGTCATCC+AGG - chr4_1:49708333-49708352 Msa0552930:intron 40.0%
TTGCCTTGTATTGTCATCCA+GGG - chr4_1:49708334-49708353 Msa0552930:intron 40.0%
GTTACATCTCTAGTCATGTG+TGG + chr4_1:49708436-49708455 None:intergenic 40.0%
! TGAGAAAGCACAAGGAATTG+TGG - chr4_1:49708474-49708493 Msa0552930:intron 40.0%
AAAGCTCAACCTCATTGGAA+GGG + chr4_1:49708550-49708569 None:intergenic 40.0%
AAAAGCTCAACCTCATTGGA+AGG + chr4_1:49708551-49708570 None:intergenic 40.0%
AACTAACAGGGATCTGAGTT+AGG - chr4_1:49708581-49708600 Msa0552930:intron 40.0%
AAGGAAGCCATGGTTATGGT+TGG + chr4_1:49705033-49705052 None:intergenic 45.0%
GTTGAAGGAAGCCATGGTTA+TGG + chr4_1:49705037-49705056 None:intergenic 45.0%
AGCGAGAGAGAAAATCCAGA+AGG + chr4_1:49705061-49705080 None:intergenic 45.0%
TTGAAGGAACGACGACAACA+TGG - chr4_1:49705621-49705640 Msa0552930:intron 45.0%
TATCCACACCTTCATCTGAC+TGG + chr4_1:49705885-49705904 None:intergenic 45.0%
! GCCCAAGACTTTGATAGCAT+TGG - chr4_1:49705949-49705968 Msa0552930:intron 45.0%
CCCCAATGCTATCAAAGTCT+TGG + chr4_1:49705954-49705973 None:intergenic 45.0%
CGAAGCCAAGAGTCAAATCA+GGG - chr4_1:49706314-49706333 Msa0552930:intron 45.0%
! AGAGACCCTGATTTGACTCT+TGG + chr4_1:49706322-49706341 None:intergenic 45.0%
ACAAGCAGACGATGATCAAC+AGG + chr4_1:49706440-49706459 None:intergenic 45.0%
ACGGGAATTTCATATCCTCC+TGG - chr4_1:49706637-49706656 Msa0552930:intron 45.0%
ATATCCTCCTGGAAAGAGGT+TGG - chr4_1:49706648-49706667 Msa0552930:intron 45.0%
TTGGTCTACTTGCCATCTGT+AGG - chr4_1:49706737-49706756 Msa0552930:CDS 45.0%
TACTTGCCATCTGTAGGAGA+TGG - chr4_1:49706743-49706762 Msa0552930:CDS 45.0%
ATATGATGTCGGCCATCTGA+AGG - chr4_1:49706887-49706906 Msa0552930:intron 45.0%
AGCAGTTGCCTTCAAGGTAA+TGG + chr4_1:49707140-49707159 None:intergenic 45.0%
!! CCTGGGAGTTTTGATCTTGT+CGG - chr4_1:49707249-49707268 Msa0552930:intron 45.0%
!! TGCCGTTAAAGAAGGTGCTT+TGG + chr4_1:49707308-49707327 None:intergenic 45.0%
GTTGAAGTTGTTGAAGCTGG+TGG - chr4_1:49707330-49707349 Msa0552930:intron 45.0%
!! GTGAGAAGTTTAGGGCCTTT+TGG + chr4_1:49707999-49708018 None:intergenic 45.0%
!! TCTCACGTTTGATTTGGTCC+TGG - chr4_1:49708013-49708032 Msa0552930:intron 45.0%
CGAGAATATCAGAGGGATGA+AGG + chr4_1:49708101-49708120 None:intergenic 45.0%
AGGGCTCCTAAAGTTGAAGT+TGG - chr4_1:49708157-49708176 Msa0552930:intron 45.0%
CAGATGCTTCAACAGACGAA+TGG - chr4_1:49708191-49708210 Msa0552930:intron 45.0%
TTCAACAGACGAATGGCTAC+AGG - chr4_1:49708198-49708217 Msa0552930:intron 45.0%
GTTCCCTGGATGACAATACA+AGG + chr4_1:49708340-49708359 None:intergenic 45.0%
ACTGAGTATATGCAGTTCCC+TGG + chr4_1:49708354-49708373 None:intergenic 45.0%
AACAGGGATCTGAGTTAGGA+AGG - chr4_1:49708585-49708604 Msa0552930:intron 45.0%
CGTGTGCGGATTCCTAATAT+AGG - chr4_1:49708695-49708714 Msa0552930:intron 45.0%
!!! TTATAATTTGTATTAAAAAT+TGG - chr4_1:49705259-49705278 Msa0552930:three_prime_UTR 5.0%
GAAGGAGTTGAAGGAAGCCA+TGG + chr4_1:49705043-49705062 None:intergenic 50.0%
TGGCTTCCTTCAACTCCTTC+TGG - chr4_1:49705043-49705062 Msa0552930:three_prime_UTR 50.0%
ATCGCTTCACCGTTCCTTCA+AGG - chr4_1:49705090-49705109 Msa0552930:three_prime_UTR 50.0%
GGCACCTAGCAACTAGCAAA+TGG + chr4_1:49705864-49705883 None:intergenic 50.0%
GGAAGTGATATTGGCGTCGT+TGG - chr4_1:49705919-49705938 Msa0552930:intron 50.0%
TGATATTGGCGTCGTTGGTG+AGG - chr4_1:49705924-49705943 Msa0552930:intron 50.0%
TACAATGCAGTGGTTACGGC+TGG - chr4_1:49706123-49706142 Msa0552930:intron 50.0%
AGAAGACACAGAGCTGCTTG+TGG - chr4_1:49706146-49706165 Msa0552930:intron 50.0%
GAAGACACAGAGCTGCTTGT+GGG - chr4_1:49706147-49706166 Msa0552930:intron 50.0%
GCGAAGCCAAGAGTCAAATC+AGG - chr4_1:49706313-49706332 Msa0552930:intron 50.0%
GCAGACGATGATCAACAGGA+AGG + chr4_1:49706436-49706455 None:intergenic 50.0%
CTATCCAACCTCTTTCCAGG+AGG + chr4_1:49706655-49706674 None:intergenic 50.0%
TTTGGCACAGGGCAGTAACT+GGG + chr4_1:49706801-49706820 None:intergenic 50.0%
! TTTTGGCACAGGGCAGTAAC+TGG + chr4_1:49706802-49706821 None:intergenic 50.0%
! TGATTTTTCCGTGTGCAGCC+TGG - chr4_1:49707231-49707250 Msa0552930:intron 50.0%
! GATTTTTCCGTGTGCAGCCT+GGG - chr4_1:49707232-49707251 Msa0552930:intron 50.0%
CCGACAAGATCAAAACTCCC+AGG + chr4_1:49707252-49707271 None:intergenic 50.0%
CACAAGCTGGAGCAATAACC+AGG + chr4_1:49708034-49708053 None:intergenic 50.0%
CAGACGAATGGCTACAGGTA+TGG - chr4_1:49708203-49708222 Msa0552930:intron 50.0%
GAAGGAACGGTGAAGCGATG+AGG + chr4_1:49705089-49705108 None:intergenic 55.0%
GCTAGGTGCCAGTCAGATGA+AGG - chr4_1:49705874-49705893 Msa0552930:intron 55.0%
GTGCCAGTCAGATGAAGGTG+TGG - chr4_1:49705879-49705898 Msa0552930:intron 55.0%
! AAAGTAGCTTGCGCTGAGGC+TGG + chr4_1:49707077-49707096 None:intergenic 55.0%
! TGGGAAAGTAGCTTGCGCTG+AGG + chr4_1:49707081-49707100 None:intergenic 55.0%
CAAAACTCCCAGGCTGCACA+CGG + chr4_1:49707242-49707261 None:intergenic 55.0%
CATGAATCCATAGCCCCAGG+AGG + chr4_1:49707410-49707429 None:intergenic 55.0%
CTCCTGGGGCTATGGATTCA+TGG - chr4_1:49707408-49707427 Msa0552930:CDS 55.0%
GACCATGAATCCATAGCCCC+AGG + chr4_1:49707413-49707432 None:intergenic 55.0%
! GGGGACTTTTCTCCTGCTCC+AGG - chr4_1:49705970-49705989 Msa0552930:intron 60.0%
AGTTGCCCTCCTTGTCCTCC+TGG - chr4_1:49707392-49707411 Msa0552930:CDS 60.0%
GTTGCCCTCCTTGTCCTCCT+GGG - chr4_1:49707393-49707412 Msa0552930:CDS 60.0%
TTGCCCTCCTTGTCCTCCTG+GGG - chr4_1:49707394-49707413 Msa0552930:CDS 60.0%
TAGCCCCAGGAGGACAAGGA+GGG + chr4_1:49707400-49707419 None:intergenic 60.0%
ATAGCCCCAGGAGGACAAGG+AGG + chr4_1:49707401-49707420 None:intergenic 60.0%
TCCTTGTCCTCCTGGGGCTA+TGG - chr4_1:49707400-49707419 Msa0552930:CDS 60.0%
TCCATAGCCCCAGGAGGACA+AGG + chr4_1:49707404-49707423 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49704978 49708883 49704978 ID=Msa0552930;Name=Msa0552930
chr4_1 mRNA 49704978 49708883 49704978 ID=Msa0552930-mRNA-1;Parent=Msa0552930;Name=Msa0552930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|8|478|258
chr4_1 exon 49704978 49705506 49704978 ID=Msa0552930-mRNA-1:exon:14031;Parent=Msa0552930-mRNA-1
chr4_1 exon 49705642 49705713 49705642 ID=Msa0552930-mRNA-1:exon:14030;Parent=Msa0552930-mRNA-1
chr4_1 exon 49706409 49706612 49706409 ID=Msa0552930-mRNA-1:exon:14029;Parent=Msa0552930-mRNA-1
chr4_1 exon 49706731 49706808 49706731 ID=Msa0552930-mRNA-1:exon:14028;Parent=Msa0552930-mRNA-1
chr4_1 exon 49707383 49707471 49707383 ID=Msa0552930-mRNA-1:exon:14027;Parent=Msa0552930-mRNA-1
chr4_1 exon 49707678 49707728 49707678 ID=Msa0552930-mRNA-1:exon:14026;Parent=Msa0552930-mRNA-1
chr4_1 exon 49707828 49707989 49707828 ID=Msa0552930-mRNA-1:exon:14025;Parent=Msa0552930-mRNA-1
chr4_1 exon 49708750 49708883 49708750 ID=Msa0552930-mRNA-1:exon:14024;Parent=Msa0552930-mRNA-1
chr4_1 five_prime_UTR 49708820 49708883 49708820 ID=Msa0552930-mRNA-1:five_prime_utr;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49708750 49708819 49708750 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49707828 49707989 49707828 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49707678 49707728 49707678 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49707383 49707471 49707383 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49706731 49706808 49706731 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49706409 49706612 49706409 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49705642 49705713 49705642 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 CDS 49705456 49705506 49705456 ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1
chr4_1 three_prime_UTR 49704978 49705455 49704978 ID=Msa0552930-mRNA-1:three_prime_utr;Parent=Msa0552930-mRNA-1
Gene Sequence

>Msa0552930

ATGGCTTCCTTCAACTCCTTCTGGATTTTCTCTCTCGCTTTTTTCCTCATCGCTTCACCGTTCCTTCAAGTTGCTAGGTGCCAGTCAGATGAAGGTGTGGATACTACTACTGAAGAAGGAAGTGATATTGGCGTCGTTGGTGAGGAAGCCCAAGACTTTGATAGCATTGGGGACTTTTCTCCTGCTCCAGGAATTGATACAATAAGTGTATTTCCAAAAAATTTTGCAAAATTGGTTACGGCTGGAGAAGACACAGAGCTGCTTGTGGGTGTAAAAAATAACGGAGACTCCAGCTTGAATGTTGTTGCAATCAAGGCTAGTGTTCACCTTCCTGTTGATCATCGTCTGCTTGTTCAAAATCTTACTGCTCAGGTTTTCAACAATGGTTCTGTACCAGCCTCAGCGCAAGCTACTTTCCCATACATATTTGCAGTCAGTAAATTCTTGCAGCCTGGGAGTTTTGATCTTGTCGGCACTATTATTTATGAGATAGACGAGCAACCATACCAAAGCACCTTCTTTAACGGCACTGTTGAAGTTGTTGAAGCTGGTGGTATTCTTAGCATCGAATCTGTCTTTCTTGTTACTCTTGGAGTTGCCCTCCTTGTCCTCCTGGGGCTATGGATTCATGGTCAAATACAAAACCTATCTAAGAAAACAAAGAGGGCTCCTAAAGTTGAAGTTGGAACTAGATCTACAGATGCTTCAACAGACGAATGGCTACAGGGAACTGCATATACTCAGTCTCTGTCGAGCAAATCGAAGAAGAAGAAGTAG

Protein sequence

>Msa0552930

MASFNSFWIFSLAFFLIASPFLQVARCQSDEGVDTTTEEGSDIGVVGEEAQDFDSIGDFSPAPGIDTISVFPKNFAKLVTAGEDTELLVGVKNNGDSSLNVVAIKASVHLPVDHRLLVQNLTAQVFNNGSVPASAQATFPYIFAVSKFLQPGSFDLVGTIIYEIDEQPYQSTFFNGTVEVVEAGGILSIESVFLVTLGVALLVLLGLWIHGQIQNLSKKTKRAPKVEVGTRSTDASTDEWLQGTAYTQSLSSKSKKKK*