Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0552930 | XP_003607276.1 | 98.837 | 258 | 1 | 1 | 1 | 258 | 1 | 256 | 1.64e-180 | 506 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0552930 | sp|P45434|SSRA_ARATH | 60.581 | 241 | 87 | 2 | 23 | 258 | 20 | 257 | 1.75e-83 | 253 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0552930 | G7JPK6 | 98.837 | 258 | 1 | 1 | 1 | 258 | 1 | 256 | 0.0 | 506 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0173250 | Msa0552930 | 0.822928 | 1.821962e-53 | -8.615850e-47 |
Msa0552930 | Msa1402010 | 0.830893 | 2.272489e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0552930 | MtrunA17_Chr4g0038491 | 98.837 | 258 | 1 | 1 | 1 | 258 | 1 | 256 | 0.0 | 506 |
Msa0552930 | MtrunA17_Chr3g0145491 | 75.299 | 251 | 57 | 3 | 1 | 248 | 1 | 249 | 5.42e-126 | 358 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0552930 | AT2G16595.1 | 56.897 | 232 | 92 | 3 | 19 | 248 | 17 | 242 | 4.41e-89 | 265 |
Msa0552930 | AT2G21160.1 | 60.581 | 241 | 87 | 2 | 23 | 258 | 20 | 257 | 1.78e-84 | 253 |
Msa0552930 | AT2G21160.2 | 59.412 | 170 | 61 | 2 | 23 | 187 | 20 | 186 | 1.15e-64 | 200 |
Find 83 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATATTTATGGGAAGATATT+AGG | 0.172676 | 4_1:-49705089 | Msa0552930:three_prime_UTR |
TGGCTTCCTTCAACTCCTTC+TGG | 0.233654 | 4_1:-49708796 | Msa0552930:CDS |
AGTTGCCCTCCTTGTCCTCC+TGG | 0.292164 | 4_1:-49706447 | Msa0552930:CDS |
ATTATATCAATGGCTGAAAA+TGG | 0.302791 | 4_1:+49705007 | None:intergenic |
ACAGACTAGAAACCTATATT+AGG | 0.330285 | 4_1:+49705132 | None:intergenic |
TCTGTCTTTCTTGTTACTCT+TGG | 0.333410 | 4_1:-49706470 | Msa0552930:CDS |
ATCGCTTCACCGTTCCTTCA+AGG | 0.338911 | 4_1:-49708749 | Msa0552930:intron |
TGCAGTCAGTAAATTCTTGC+AGG | 0.339537 | 4_1:-49706730 | Msa0552930:intron |
CTCCTGGGGCTATGGATTCA+TGG | 0.339701 | 4_1:-49706431 | Msa0552930:CDS |
ATATTTATGGGAAGATATTA+GGG | 0.346402 | 4_1:-49705088 | Msa0552930:three_prime_UTR |
CTAGTTCCAACTTCAACTTT+AGG | 0.354589 | 4_1:+49705676 | None:intergenic |
CTTGAATGTTGTTGCAATCA+AGG | 0.356465 | 4_1:-49707439 | Msa0552930:CDS |
CCCAAGACTTTGATAGCATT+GGG | 0.358768 | 4_1:-49707889 | Msa0552930:CDS |
ACACTTATTGTATCAATTCC+TGG | 0.359626 | 4_1:+49707851 | None:intergenic |
TACCAAAGCACCTTCTTTAA+CGG | 0.376523 | 4_1:-49706536 | Msa0552930:CDS |
GTTGCCCTCCTTGTCCTCCT+GGG | 0.379518 | 4_1:-49706446 | Msa0552930:CDS |
TCCTTGTCCTCCTGGGGCTA+TGG | 0.384359 | 4_1:-49706439 | Msa0552930:CDS |
TTCAATTAATATTATATCAA+TGG | 0.392531 | 4_1:+49704997 | None:intergenic |
TAGATATTACTACCTTAGAT+AGG | 0.392887 | 4_1:+49706396 | None:intergenic |
ACTGAAGAAGGAAGTGATAT+TGG | 0.393457 | 4_1:-49707929 | Msa0552930:CDS |
TTGATATAATATTAATTGAA+TGG | 0.401289 | 4_1:-49704994 | Msa0552930:three_prime_UTR |
TCAAATACAAAACCTATCTA+AGG | 0.403503 | 4_1:-49706408 | Msa0552930:intron |
TTACTGACTGCAAATATGTA+TGG | 0.407567 | 4_1:+49706741 | None:intergenic |
GAATGGTTTAGATCTATTGA+TGG | 0.408893 | 4_1:-49704977 | None:intergenic |
TTCATCGTTGAAAATTCATT+CGG | 0.410426 | 4_1:-49708843 | Msa0552930:five_prime_UTR |
GTTGAAGGAAGCCATGGTTA+TGG | 0.412051 | 4_1:+49708805 | None:intergenic |
CGTGTGCGGATTCCTAATAT+AGG | 0.413150 | 4_1:-49705144 | Msa0552930:three_prime_UTR |
CCCCAATGCTATCAAAGTCT+TGG | 0.420198 | 4_1:+49707888 | None:intergenic |
GCCCAAGACTTTGATAGCAT+TGG | 0.431971 | 4_1:-49707890 | Msa0552930:CDS |
AACTAACAGGGATCTGAGTT+AGG | 0.444874 | 4_1:-49705258 | Msa0552930:three_prime_UTR |
TGTTCAAAATCTTACTGCTC+AGG | 0.451766 | 4_1:-49707382 | Msa0552930:intron |
TGCCGTTAAAGAAGGTGCTT+TGG | 0.453623 | 4_1:+49706534 | None:intergenic |
TGTAGAGAAGCAAACCTTGA+AGG | 0.473427 | 4_1:+49708735 | None:intergenic |
ATTGTATCAATTCCTGGAGC+AGG | 0.479754 | 4_1:+49707857 | None:intergenic |
GAAAATCCAGAAGGAGTTGA+AGG | 0.482193 | 4_1:+49708790 | None:intergenic |
ACAAGCAGACGATGATCAAC+AGG | 0.483999 | 4_1:+49707402 | None:intergenic |
CCCAATGCTATCAAAGTCTT+GGG | 0.484284 | 4_1:+49707889 | None:intergenic |
TTAAAGAAGGTGCTTTGGTA+TGG | 0.496640 | 4_1:+49706539 | None:intergenic |
TGAATACAATGCAGTGGTTA+CGG | 0.500104 | 4_1:-49707720 | Msa0552930:intron |
AAAGTAGCTTGCGCTGAGGC+TGG | 0.500206 | 4_1:+49706765 | None:intergenic |
TACAATGCAGTGGTTACGGC+TGG | 0.500546 | 4_1:-49707716 | Msa0552930:intron |
GGAAGTGATATTGGCGTCGT+TGG | 0.517650 | 4_1:-49707920 | Msa0552930:CDS |
TTCAACAGTGCCGTTAAAGA+AGG | 0.525152 | 4_1:+49706526 | None:intergenic |
AGGGCTCCTAAAGTTGAAGT+TGG | 0.526588 | 4_1:-49705682 | Msa0552930:CDS |
ACTTTAAACTACAACACAAA+AGG | 0.527968 | 4_1:+49705326 | None:intergenic |
ACTGTTGAAGTTGTTGAAGC+TGG | 0.536900 | 4_1:-49706512 | Msa0552930:CDS |
AAAAGCTCAACCTCATTGGA+AGG | 0.541243 | 4_1:+49705291 | None:intergenic |
TCCATAGCCCCAGGAGGACA+AGG | 0.542721 | 4_1:+49706438 | None:intergenic |
TTCAACAGACGAATGGCTAC+AGG | 0.544409 | 4_1:-49705641 | Msa0552930:intron |
TACTGACTGCAAATATGTAT+GGG | 0.546293 | 4_1:+49706742 | None:intergenic |
CTTTCTCAAACTAATTAACA+TGG | 0.552074 | 4_1:+49705380 | None:intergenic |
TGAGAAAGCACAAGGAATTG+TGG | 0.552335 | 4_1:-49705365 | Msa0552930:three_prime_UTR |
GCTAGGTGCCAGTCAGATGA+AGG | 0.552570 | 4_1:-49707965 | Msa0552930:CDS |
GATTGCAACAACATTCAAGC+TGG | 0.561649 | 4_1:+49707443 | None:intergenic |
GACCATGAATCCATAGCCCC+AGG | 0.564710 | 4_1:+49706429 | None:intergenic |
TTGCCCTCCTTGTCCTCCTG+GGG | 0.570226 | 4_1:-49706445 | Msa0552930:CDS |
AACAGGGATCTGAGTTAGGA+AGG | 0.571431 | 4_1:-49705254 | Msa0552930:three_prime_UTR |
GTGGATACTACTACTGAAGA+AGG | 0.575203 | 4_1:-49707941 | Msa0552930:CDS |
TGATATTGGCGTCGTTGGTG+AGG | 0.582105 | 4_1:-49707915 | Msa0552930:CDS |
GAAGACACAGAGCTGCTTGT+GGG | 0.585122 | 4_1:-49707692 | Msa0552930:CDS |
TATCCACACCTTCATCTGAC+TGG | 0.588486 | 4_1:+49707957 | None:intergenic |
TAAACTACAACACAAAAGGC+AGG | 0.598642 | 4_1:+49705330 | None:intergenic |
AGAAGCAAACCTTGAAGGAA+CGG | 0.604617 | 4_1:+49708740 | None:intergenic |
AATTAGTTTGAGAAAGCACA+AGG | 0.607761 | 4_1:-49705373 | Msa0552930:three_prime_UTR |
AAGGAAGCCATGGTTATGGT+TGG | 0.614728 | 4_1:+49708809 | None:intergenic |
GAAGGAGTTGAAGGAAGCCA+TGG | 0.615324 | 4_1:+49708799 | None:intergenic |
AGCGAGAGAGAAAATCCAGA+AGG | 0.615896 | 4_1:+49708781 | None:intergenic |
AAAGCTCAACCTCATTGGAA+GGG | 0.619858 | 4_1:+49705292 | None:intergenic |
TAACACACCAACCATAACCA+TGG | 0.624873 | 4_1:-49708816 | Msa0552930:exon |
CCGACAAGATCAAAACTCCC+AGG | 0.627060 | 4_1:+49706590 | None:intergenic |
CAGATGCTTCAACAGACGAA+TGG | 0.628599 | 4_1:-49705648 | Msa0552930:CDS |
AGAAGACACAGAGCTGCTTG+TGG | 0.639497 | 4_1:-49707693 | Msa0552930:CDS |
GTTACATCTCTAGTCATGTG+TGG | 0.642453 | 4_1:+49705406 | None:intergenic |
TAGCCCCAGGAGGACAAGGA+GGG | 0.644555 | 4_1:+49706442 | None:intergenic |
GTTGAAGTTGTTGAAGCTGG+TGG | 0.646915 | 4_1:-49706509 | Msa0552930:CDS |
GTGCCAGTCAGATGAAGGTG+TGG | 0.647403 | 4_1:-49707960 | Msa0552930:CDS |
TTTATGGGAAGATATTAGGG+TGG | 0.658062 | 4_1:-49705085 | Msa0552930:three_prime_UTR |
GAAGGAACGGTGAAGCGATG+AGG | 0.662056 | 4_1:+49708753 | None:intergenic |
CCAAGACTTTGATAGCATTG+GGG | 0.668986 | 4_1:-49707888 | Msa0552930:CDS |
ATAGCCCCAGGAGGACAAGG+AGG | 0.677509 | 4_1:+49706441 | None:intergenic |
GCAGACGATGATCAACAGGA+AGG | 0.726473 | 4_1:+49707406 | None:intergenic |
CATGAATCCATAGCCCCAGG+AGG | 0.732654 | 4_1:+49706432 | None:intergenic |
TGGGAAAGTAGCTTGCGCTG+AGG | 0.756303 | 4_1:+49706761 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAAATTGGTTTTTTATTT+TGG | - | chr4_1:49705272-49705291 | Msa0552930:three_prime_UTR | 10.0% |
!!! | AAAAATTGGTTTTTTATTTT+GGG | - | chr4_1:49705273-49705292 | Msa0552930:three_prime_UTR | 10.0% |
!!! | TTATTTTATTTTTTGATCAA+AGG | - | chr4_1:49705422-49705441 | Msa0552930:three_prime_UTR | 10.0% |
!!! | TATTTTATTTTTTGATCAAA+GGG | - | chr4_1:49705423-49705442 | Msa0552930:three_prime_UTR | 10.0% |
!!! | AGTTTTTTTTTTTTTTTTTG+AGG | - | chr4_1:49705475-49705494 | Msa0552930:CDS | 10.0% |
!! | TTCAATTAATATTATATCAA+TGG | + | chr4_1:49708845-49708864 | None:intergenic | 10.0% |
!! | TTGATATAATATTAATTGAA+TGG | - | chr4_1:49708845-49708864 | Msa0552930:five_prime_UTR | 10.0% |
!!! | AAAATTGGTTTTTTATTTTG+GGG | - | chr4_1:49705274-49705293 | Msa0552930:three_prime_UTR | 15.0% |
!!! | AAAGATCACATTTTTAATAT+TGG | - | chr4_1:49705392-49705411 | Msa0552930:three_prime_UTR | 15.0% |
!!! | AAGATCACATTTTTAATATT+GGG | - | chr4_1:49705393-49705412 | Msa0552930:three_prime_UTR | 15.0% |
!!! | TATTTTGATCTATTTTTGAA+AGG | - | chr4_1:49705501-49705520 | Msa0552930:intron | 15.0% |
!!! | CTTTTAATATAGATTTCAAA+TGG | - | chr4_1:49705556-49705575 | Msa0552930:intron | 15.0% |
!!! | TTACATTTTGCAAAATTTTT+TGG | + | chr4_1:49706018-49706037 | None:intergenic | 15.0% |
!!! | AAAAAATTTTGCAAAATGTA+AGG | - | chr4_1:49706017-49706036 | Msa0552930:intron | 15.0% |
!! | AAAGAAAGTAAAAAAAGAAA+AGG | + | chr4_1:49706290-49706309 | None:intergenic | 15.0% |
!!! | TTCTTTTTTTACTTTCTTTT+TGG | - | chr4_1:49706291-49706310 | Msa0552930:intron | 15.0% |
!! | GTATTCAATTTACAAAATTA+AGG | - | chr4_1:49707584-49707603 | Msa0552930:intron | 15.0% |
!! | AAAATAGAAAATATTTCACA+AGG | + | chr4_1:49707619-49707638 | None:intergenic | 15.0% |
!! | TATATTATCTCTATACTTAT+TGG | - | chr4_1:49708239-49708258 | Msa0552930:intron | 15.0% |
!! | AAAATAAAAAGGAAGCAATT+GGG | + | chr4_1:49705204-49705223 | None:intergenic | 20.0% |
!! | AAAAATAAAAAGGAAGCAAT+TGG | + | chr4_1:49705205-49705224 | None:intergenic | 20.0% |
!! | AATGCATGCAAAAAATAAAA+AGG | + | chr4_1:49705215-49705234 | None:intergenic | 20.0% |
!!! | TAAATCTGTATCTTTTTAGA+TGG | - | chr4_1:49705721-49705740 | Msa0552930:intron | 20.0% |
!! | ATGAACATCTAAATTAAACT+TGG | - | chr4_1:49706493-49706512 | Msa0552930:CDS | 20.0% |
!! | ATTAAAACTAAGTCTTTCAA+GGG | + | chr4_1:49706701-49706720 | None:intergenic | 20.0% |
!! | TCAAATAATAGCAAATTATC+TGG | + | chr4_1:49707484-49707503 | None:intergenic | 20.0% |
!!! | TTTGCTAATTTTTCTCATAA+TGG | - | chr4_1:49707522-49707541 | Msa0552930:intron | 20.0% |
!!! | TTTTTTTTTACACAGTAAAC+AGG | - | chr4_1:49707864-49707883 | Msa0552930:CDS | 20.0% |
!!! | TTTTTTTTACACAGTAAACA+GGG | - | chr4_1:49707865-49707884 | Msa0552930:CDS | 20.0% |
!!! | TATTTTATCAGAAAACAAAG+AGG | - | chr4_1:49708137-49708156 | Msa0552930:intron | 20.0% |
!!! | ATTTTATCAGAAAACAAAGA+GGG | - | chr4_1:49708138-49708157 | Msa0552930:intron | 20.0% |
!!! | TTTTCTAAGAAAAAACTAAC+AGG | - | chr4_1:49708568-49708587 | Msa0552930:intron | 20.0% |
!!! | TTTCTAAGAAAAAACTAACA+GGG | - | chr4_1:49708569-49708588 | Msa0552930:intron | 20.0% |
!!! | ATTCTCTGGTTTTATATTTA+TGG | - | chr4_1:49708738-49708757 | Msa0552930:intron | 20.0% |
!!! | TTCTCTGGTTTTATATTTAT+GGG | - | chr4_1:49708739-49708758 | Msa0552930:intron | 20.0% |
!! | TATATTTATGGGAAGATATT+AGG | - | chr4_1:49708750-49708769 | Msa0552930:CDS | 20.0% |
!! | ATATTTATGGGAAGATATTA+GGG | - | chr4_1:49708751-49708770 | Msa0552930:CDS | 20.0% |
!!! | ACAAAAACATACTTTTCAAA+GGG | + | chr4_1:49708811-49708830 | None:intergenic | 20.0% |
!!! | TACAAAAACATACTTTTCAA+AGG | + | chr4_1:49708812-49708831 | None:intergenic | 20.0% |
! | TTCATCGTTGAAAATTCATT+CGG | - | chr4_1:49704996-49705015 | Msa0552930:three_prime_UTR | 25.0% |
! | CAAATGGATCATAGATAAAA+CGG | + | chr4_1:49705144-49705163 | None:intergenic | 25.0% |
! | TAACTTCAAACTAGTAATGT+AGG | + | chr4_1:49705362-49705381 | None:intergenic | 25.0% |
! | AATGGAATTCCTAATTTAAG+TGG | - | chr4_1:49705574-49705593 | Msa0552930:intron | 25.0% |
! | TATTTGCAACCACTTAAATT+AGG | + | chr4_1:49705586-49705605 | None:intergenic | 25.0% |
! | TAACGGTAATTCAATCATAT+TGG | - | chr4_1:49706179-49706198 | Msa0552930:intron | 25.0% |
! | GATTAAAACTAAGTCTTTCA+AGG | + | chr4_1:49706702-49706721 | None:intergenic | 25.0% |
! | ATATATCCTAGCAAAATCTT+TGG | + | chr4_1:49706871-49706890 | None:intergenic | 25.0% |
!!! | TGATTTTGCATTTTTTGTGA+AGG | - | chr4_1:49706929-49706948 | Msa0552930:intron | 25.0% |
!!! | CATTTTTTGTGAAGGAAATA+CGG | - | chr4_1:49706937-49706956 | Msa0552930:intron | 25.0% |
! | TCAAATACAAAACCTATCTA+AGG | - | chr4_1:49707431-49707450 | Msa0552930:CDS | 25.0% |
! | TAGATATTACTACCTTAGAT+AGG | + | chr4_1:49707446-49707465 | None:intergenic | 25.0% |
! | TTAGCAAATTCAAAATGTGA+AGG | + | chr4_1:49707510-49707529 | None:intergenic | 25.0% |
!!! | TTTTCTCATAATGGTTTGTT+TGG | - | chr4_1:49707531-49707550 | Msa0552930:intron | 25.0% |
! | AATATTTCACAAGGTAAACA+GGG | + | chr4_1:49707610-49707629 | None:intergenic | 25.0% |
! | AAATATTTCACAAGGTAAAC+AGG | + | chr4_1:49707611-49707630 | None:intergenic | 25.0% |
!!! | GAACAAATATGTGCATTTTT+TGG | - | chr4_1:49707705-49707724 | Msa0552930:CDS | 25.0% |
! | GATGAAGGAAATATTAAAGA+CGG | + | chr4_1:49708086-49708105 | None:intergenic | 25.0% |
! | ATATGAAAAACTGAAGAACA+TGG | + | chr4_1:49708268-49708287 | None:intergenic | 25.0% |
! | CTTTCTCAAACTAATTAACA+TGG | + | chr4_1:49708462-49708481 | None:intergenic | 25.0% |
! | ACTTTAAACTACAACACAAA+AGG | + | chr4_1:49708516-49708535 | None:intergenic | 25.0% |
!!! | TTTTTTTTGTTTATCGTGTG+CGG | - | chr4_1:49708681-49708700 | Msa0552930:intron | 25.0% |
!! | CAAAAACATACTTTTCAAAG+GGG | + | chr4_1:49708810-49708829 | None:intergenic | 25.0% |
! | ATTATATCAATGGCTGAAAA+TGG | + | chr4_1:49708835-49708854 | None:intergenic | 25.0% |
! | TTTTTATGCTATGTGCATGA+TGG | - | chr4_1:49705819-49705838 | Msa0552930:intron | 30.0% |
ACACTTATTGTATCAATTCC+TGG | + | chr4_1:49705991-49706010 | None:intergenic | 30.0% | |
TTTGTATGAATACAATGCAG+TGG | - | chr4_1:49706113-49706132 | Msa0552930:intron | 30.0% | |
CTTGTGGGTGTAAAAAATAA+CGG | - | chr4_1:49706162-49706181 | Msa0552930:intron | 30.0% | |
TTATTTCGTGTGCTAATAAC+AGG | - | chr4_1:49706368-49706387 | Msa0552930:intron | 30.0% | |
GAAGATTAAGATTGACTACA+AGG | + | chr4_1:49706583-49706602 | None:intergenic | 30.0% | |
TGAAAGCCATTTATACGAAA+CGG | - | chr4_1:49706618-49706637 | Msa0552930:intron | 30.0% | |
AAATTCCCGTTTCGTATAAA+TGG | + | chr4_1:49706627-49706646 | None:intergenic | 30.0% | |
! | TGCAATCTAATGCTCATTTT+TGG | + | chr4_1:49706819-49706838 | None:intergenic | 30.0% |
TTTGCTAGGATATATGATGT+CGG | - | chr4_1:49706876-49706895 | Msa0552930:intron | 30.0% | |
! | TATTGTGTACTGTCATTTAC+TGG | + | chr4_1:49706998-49707017 | None:intergenic | 30.0% |
!!! | CTTTTTTTCTTTCTGATTGC+AGG | - | chr4_1:49707031-49707050 | Msa0552930:intron | 30.0% |
! | TACTGACTGCAAATATGTAT+GGG | + | chr4_1:49707100-49707119 | None:intergenic | 30.0% |
! | TTACTGACTGCAAATATGTA+TGG | + | chr4_1:49707101-49707120 | None:intergenic | 30.0% |
GAGATCAATGAGTATATGTA+TGG | + | chr4_1:49707199-49707218 | None:intergenic | 30.0% | |
! | AAACGTTTTCCAATACCAAA+AGG | - | chr4_1:49707981-49708000 | Msa0552930:intron | 30.0% |
AATCAAACGTGAGAAGTTTA+GGG | + | chr4_1:49708007-49708026 | None:intergenic | 30.0% | |
AAATCAAACGTGAGAAGTTT+AGG | + | chr4_1:49708008-49708027 | None:intergenic | 30.0% | |
TAAACTTCTCACGTTTGATT+TGG | - | chr4_1:49708007-49708026 | Msa0552930:intron | 30.0% | |
!! | TTTTCTTTAAAAGCACAAGC+TGG | + | chr4_1:49708047-49708066 | None:intergenic | 30.0% |
! | AATTAGTTTGAGAAAGCACA+AGG | - | chr4_1:49708466-49708485 | Msa0552930:intron | 30.0% |
!! | AGGATAGAACTTTTGAAAAG+TGG | - | chr4_1:49708605-49708624 | Msa0552930:intron | 30.0% |
ACAGACTAGAAACCTATATT+AGG | + | chr4_1:49708710-49708729 | None:intergenic | 30.0% | |
GCTTCTCTACATTATAGATC+TGG | - | chr4_1:49705116-49705135 | Msa0552930:three_prime_UTR | 35.0% | |
TAAAAAGGAAGCAATTGGGT+CGG | + | chr4_1:49705200-49705219 | None:intergenic | 35.0% | |
CATGCATTGTGATCTTTGAT+CGG | - | chr4_1:49705227-49705246 | Msa0552930:three_prime_UTR | 35.0% | |
!!! | TGGGGTATTTTGATCTTTGT+TGG | - | chr4_1:49705292-49705311 | Msa0552930:three_prime_UTR | 35.0% |
GCATTGTTTAATCTAGTGCA+TGG | - | chr4_1:49705445-49705464 | Msa0552930:exon | 35.0% | |
TTAAGTGGTTGCAAATACTG+AGG | - | chr4_1:49705589-49705608 | Msa0552930:intron | 35.0% | |
ACTGAGGTAGAGTTATTTGA+AGG | - | chr4_1:49705605-49705624 | Msa0552930:intron | 35.0% | |
!!! | TGTTATTTTACTTGCCCTGT+CGG | - | chr4_1:49705770-49705789 | Msa0552930:intron | 35.0% |
! | GTAATTTGCAAAATCCGACA+GGG | + | chr4_1:49705787-49705806 | None:intergenic | 35.0% |
! | AGTAATTTGCAAAATCCGAC+AGG | + | chr4_1:49705788-49705807 | None:intergenic | 35.0% |
!! | TGCATGATGGTTTTTGATTG+TGG | - | chr4_1:49705832-49705851 | Msa0552930:intron | 35.0% |
!! | TTTTCCATTTGCTAGTTGCT+AGG | - | chr4_1:49705857-49705876 | Msa0552930:intron | 35.0% |
ACTGAAGAAGGAAGTGATAT+TGG | - | chr4_1:49705910-49705929 | Msa0552930:intron | 35.0% | |
TGAATACAATGCAGTGGTTA+CGG | - | chr4_1:49706119-49706138 | Msa0552930:intron | 35.0% | |
CTTGAATGTTGTTGCAATCA+AGG | - | chr4_1:49706400-49706419 | Msa0552930:intron | 35.0% | |
TGTTCAAAATCTTACTGCTC+AGG | - | chr4_1:49706457-49706476 | Msa0552930:CDS | 35.0% | |
GAAAGCCATTTATACGAAAC+GGG | - | chr4_1:49706619-49706638 | Msa0552930:intron | 35.0% | |
AATCTACACGTGACAAAGAT+TGG | - | chr4_1:49706718-49706737 | Msa0552930:intron | 35.0% | |
!!! | TAATGCTCATTTTTGGCACA+GGG | + | chr4_1:49706812-49706831 | None:intergenic | 35.0% |
! | AAGTAGCCAAAGATTTTGCT+AGG | - | chr4_1:49706862-49706881 | Msa0552930:intron | 35.0% |
ACATATAGAACTCCTTCAGA+TGG | + | chr4_1:49706902-49706921 | None:intergenic | 35.0% | |
! | TGATTGCAGGTTTTCAACAA+TGG | - | chr4_1:49707044-49707063 | Msa0552930:intron | 35.0% |
!! | TTAAAGAAGGTGCTTTGGTA+TGG | + | chr4_1:49707303-49707322 | None:intergenic | 35.0% |
! | TACCAAAGCACCTTCTTTAA+CGG | - | chr4_1:49707303-49707322 | Msa0552930:intron | 35.0% |
TCTGTCTTTCTTGTTACTCT+TGG | - | chr4_1:49707369-49707388 | Msa0552930:intron | 35.0% | |
GCAAATTCAAAATGTGAAGG+CGG | + | chr4_1:49707507-49707526 | None:intergenic | 35.0% | |
! | GGTTTGTTTGGTTTATGAAG+AGG | - | chr4_1:49707543-49707562 | Msa0552930:intron | 35.0% |
AGAAGATGAAATGCTAGCTA+GGG | + | chr4_1:49707750-49707769 | None:intergenic | 35.0% | |
GAAGGAAATATTAAAGACGG+AGG | + | chr4_1:49708083-49708102 | None:intergenic | 35.0% | |
CTAGTTCCAACTTCAACTTT+AGG | + | chr4_1:49708166-49708185 | None:intergenic | 35.0% | |
! | AGATGTCTGGTTTATGCTAT+AGG | + | chr4_1:49708296-49708315 | None:intergenic | 35.0% |
GATATTTCGTTTCAGATGTC+TGG | + | chr4_1:49708309-49708328 | None:intergenic | 35.0% | |
TAAACTACAACACAAAAGGC+AGG | + | chr4_1:49708512-49708531 | None:intergenic | 35.0% | |
! | TTTTTCTTTCCCTTCCAATG+AGG | - | chr4_1:49708538-49708557 | Msa0552930:intron | 35.0% |
TAGAAAAAGCTCAACCTCAT+TGG | + | chr4_1:49708555-49708574 | None:intergenic | 35.0% | |
! | GTCTGTGTTTTATCATTCTC+TGG | - | chr4_1:49708724-49708743 | Msa0552930:intron | 35.0% |
TTTATGGGAAGATATTAGGG+TGG | - | chr4_1:49708754-49708773 | Msa0552930:CDS | 35.0% | |
TAACACACCAACCATAACCA+TGG | - | chr4_1:49705023-49705042 | Msa0552930:three_prime_UTR | 40.0% | |
GAAAATCCAGAAGGAGTTGA+AGG | + | chr4_1:49705052-49705071 | None:intergenic | 40.0% | |
AGAAGCAAACCTTGAAGGAA+CGG | + | chr4_1:49705102-49705121 | None:intergenic | 40.0% | |
TGTAGAGAAGCAAACCTTGA+AGG | + | chr4_1:49705107-49705126 | None:intergenic | 40.0% | |
CATGCAGAAAACGAAGCAAA+TGG | + | chr4_1:49705160-49705179 | None:intergenic | 40.0% | |
CAAACTAGTAATGTAGGTGC+AGG | + | chr4_1:49705356-49705375 | None:intergenic | 40.0% | |
TGGAAGCTTGATTCAGCATT+TGG | - | chr4_1:49705741-49705760 | Msa0552930:intron | 40.0% | |
GTGGATACTACTACTGAAGA+AGG | - | chr4_1:49705898-49705917 | Msa0552930:intron | 40.0% | |
CCCAATGCTATCAAAGTCTT+GGG | + | chr4_1:49705953-49705972 | None:intergenic | 40.0% | |
! | CCCAAGACTTTGATAGCATT+GGG | - | chr4_1:49705950-49705969 | Msa0552930:intron | 40.0% |
! | CCAAGACTTTGATAGCATTG+GGG | - | chr4_1:49705951-49705970 | Msa0552930:intron | 40.0% |
ATTGTATCAATTCCTGGAGC+AGG | + | chr4_1:49705985-49706004 | None:intergenic | 40.0% | |
AATGTAAGGATCGTTCTGTC+TGG | - | chr4_1:49706031-49706050 | Msa0552930:intron | 40.0% | |
AAAGCTTGAAATCACAGTGC+TGG | + | chr4_1:49706218-49706237 | None:intergenic | 40.0% | |
GATTGCAACAACATTCAAGC+TGG | + | chr4_1:49706399-49706418 | None:intergenic | 40.0% | |
CTTACTGCTCAGGTAGTAAT+TGG | - | chr4_1:49706467-49706486 | Msa0552930:CDS | 40.0% | |
TTTCATATCCTCCTGGAAAG+AGG | - | chr4_1:49706644-49706663 | Msa0552930:intron | 40.0% | |
TTACTATCCAACCTCTTTCC+AGG | + | chr4_1:49706658-49706677 | None:intergenic | 40.0% | |
TAAAAGCCATCTCCTACAGA+TGG | + | chr4_1:49706752-49706771 | None:intergenic | 40.0% | |
!!! | CTAATGCTCATTTTTGGCAC+AGG | + | chr4_1:49706813-49706832 | None:intergenic | 40.0% |
GTCATTTACTGGATCAGAAC+AGG | + | chr4_1:49706987-49707006 | None:intergenic | 40.0% | |
TGCAGTCAGTAAATTCTTGC+AGG | - | chr4_1:49707109-49707128 | Msa0552930:intron | 40.0% | |
! | AGGTATTGCCATTACCTTGA+AGG | - | chr4_1:49707129-49707148 | Msa0552930:intron | 40.0% |
ACTAAAAGCAGTTGCCTTCA+AGG | + | chr4_1:49707146-49707165 | None:intergenic | 40.0% | |
! | TTCAACAGTGCCGTTAAAGA+AGG | + | chr4_1:49707316-49707335 | None:intergenic | 40.0% |
ACTGTTGAAGTTGTTGAAGC+TGG | - | chr4_1:49707327-49707346 | Msa0552930:intron | 40.0% | |
GAGAAGATGAAATGCTAGCT+AGG | + | chr4_1:49707751-49707770 | None:intergenic | 40.0% | |
TTCTCTTCTCTCGATCACAA+TGG | - | chr4_1:49707771-49707790 | Msa0552930:intron | 40.0% | |
!! | AGTTTAGGGCCTTTTGGTAT+TGG | + | chr4_1:49707993-49708012 | None:intergenic | 40.0% |
GCAAACACGAGAATATCAGA+GGG | + | chr4_1:49708108-49708127 | None:intergenic | 40.0% | |
AGCAAACACGAGAATATCAG+AGG | + | chr4_1:49708109-49708128 | None:intergenic | 40.0% | |
TTTGCCTTGTATTGTCATCC+AGG | - | chr4_1:49708333-49708352 | Msa0552930:intron | 40.0% | |
TTGCCTTGTATTGTCATCCA+GGG | - | chr4_1:49708334-49708353 | Msa0552930:intron | 40.0% | |
GTTACATCTCTAGTCATGTG+TGG | + | chr4_1:49708436-49708455 | None:intergenic | 40.0% | |
! | TGAGAAAGCACAAGGAATTG+TGG | - | chr4_1:49708474-49708493 | Msa0552930:intron | 40.0% |
AAAGCTCAACCTCATTGGAA+GGG | + | chr4_1:49708550-49708569 | None:intergenic | 40.0% | |
AAAAGCTCAACCTCATTGGA+AGG | + | chr4_1:49708551-49708570 | None:intergenic | 40.0% | |
AACTAACAGGGATCTGAGTT+AGG | - | chr4_1:49708581-49708600 | Msa0552930:intron | 40.0% | |
AAGGAAGCCATGGTTATGGT+TGG | + | chr4_1:49705033-49705052 | None:intergenic | 45.0% | |
GTTGAAGGAAGCCATGGTTA+TGG | + | chr4_1:49705037-49705056 | None:intergenic | 45.0% | |
AGCGAGAGAGAAAATCCAGA+AGG | + | chr4_1:49705061-49705080 | None:intergenic | 45.0% | |
TTGAAGGAACGACGACAACA+TGG | - | chr4_1:49705621-49705640 | Msa0552930:intron | 45.0% | |
TATCCACACCTTCATCTGAC+TGG | + | chr4_1:49705885-49705904 | None:intergenic | 45.0% | |
! | GCCCAAGACTTTGATAGCAT+TGG | - | chr4_1:49705949-49705968 | Msa0552930:intron | 45.0% |
CCCCAATGCTATCAAAGTCT+TGG | + | chr4_1:49705954-49705973 | None:intergenic | 45.0% | |
CGAAGCCAAGAGTCAAATCA+GGG | - | chr4_1:49706314-49706333 | Msa0552930:intron | 45.0% | |
! | AGAGACCCTGATTTGACTCT+TGG | + | chr4_1:49706322-49706341 | None:intergenic | 45.0% |
ACAAGCAGACGATGATCAAC+AGG | + | chr4_1:49706440-49706459 | None:intergenic | 45.0% | |
ACGGGAATTTCATATCCTCC+TGG | - | chr4_1:49706637-49706656 | Msa0552930:intron | 45.0% | |
ATATCCTCCTGGAAAGAGGT+TGG | - | chr4_1:49706648-49706667 | Msa0552930:intron | 45.0% | |
TTGGTCTACTTGCCATCTGT+AGG | - | chr4_1:49706737-49706756 | Msa0552930:CDS | 45.0% | |
TACTTGCCATCTGTAGGAGA+TGG | - | chr4_1:49706743-49706762 | Msa0552930:CDS | 45.0% | |
ATATGATGTCGGCCATCTGA+AGG | - | chr4_1:49706887-49706906 | Msa0552930:intron | 45.0% | |
AGCAGTTGCCTTCAAGGTAA+TGG | + | chr4_1:49707140-49707159 | None:intergenic | 45.0% | |
!! | CCTGGGAGTTTTGATCTTGT+CGG | - | chr4_1:49707249-49707268 | Msa0552930:intron | 45.0% |
!! | TGCCGTTAAAGAAGGTGCTT+TGG | + | chr4_1:49707308-49707327 | None:intergenic | 45.0% |
GTTGAAGTTGTTGAAGCTGG+TGG | - | chr4_1:49707330-49707349 | Msa0552930:intron | 45.0% | |
!! | GTGAGAAGTTTAGGGCCTTT+TGG | + | chr4_1:49707999-49708018 | None:intergenic | 45.0% |
!! | TCTCACGTTTGATTTGGTCC+TGG | - | chr4_1:49708013-49708032 | Msa0552930:intron | 45.0% |
CGAGAATATCAGAGGGATGA+AGG | + | chr4_1:49708101-49708120 | None:intergenic | 45.0% | |
AGGGCTCCTAAAGTTGAAGT+TGG | - | chr4_1:49708157-49708176 | Msa0552930:intron | 45.0% | |
CAGATGCTTCAACAGACGAA+TGG | - | chr4_1:49708191-49708210 | Msa0552930:intron | 45.0% | |
TTCAACAGACGAATGGCTAC+AGG | - | chr4_1:49708198-49708217 | Msa0552930:intron | 45.0% | |
GTTCCCTGGATGACAATACA+AGG | + | chr4_1:49708340-49708359 | None:intergenic | 45.0% | |
ACTGAGTATATGCAGTTCCC+TGG | + | chr4_1:49708354-49708373 | None:intergenic | 45.0% | |
AACAGGGATCTGAGTTAGGA+AGG | - | chr4_1:49708585-49708604 | Msa0552930:intron | 45.0% | |
CGTGTGCGGATTCCTAATAT+AGG | - | chr4_1:49708695-49708714 | Msa0552930:intron | 45.0% | |
!!! | TTATAATTTGTATTAAAAAT+TGG | - | chr4_1:49705259-49705278 | Msa0552930:three_prime_UTR | 5.0% |
GAAGGAGTTGAAGGAAGCCA+TGG | + | chr4_1:49705043-49705062 | None:intergenic | 50.0% | |
TGGCTTCCTTCAACTCCTTC+TGG | - | chr4_1:49705043-49705062 | Msa0552930:three_prime_UTR | 50.0% | |
ATCGCTTCACCGTTCCTTCA+AGG | - | chr4_1:49705090-49705109 | Msa0552930:three_prime_UTR | 50.0% | |
GGCACCTAGCAACTAGCAAA+TGG | + | chr4_1:49705864-49705883 | None:intergenic | 50.0% | |
GGAAGTGATATTGGCGTCGT+TGG | - | chr4_1:49705919-49705938 | Msa0552930:intron | 50.0% | |
TGATATTGGCGTCGTTGGTG+AGG | - | chr4_1:49705924-49705943 | Msa0552930:intron | 50.0% | |
TACAATGCAGTGGTTACGGC+TGG | - | chr4_1:49706123-49706142 | Msa0552930:intron | 50.0% | |
AGAAGACACAGAGCTGCTTG+TGG | - | chr4_1:49706146-49706165 | Msa0552930:intron | 50.0% | |
GAAGACACAGAGCTGCTTGT+GGG | - | chr4_1:49706147-49706166 | Msa0552930:intron | 50.0% | |
GCGAAGCCAAGAGTCAAATC+AGG | - | chr4_1:49706313-49706332 | Msa0552930:intron | 50.0% | |
GCAGACGATGATCAACAGGA+AGG | + | chr4_1:49706436-49706455 | None:intergenic | 50.0% | |
CTATCCAACCTCTTTCCAGG+AGG | + | chr4_1:49706655-49706674 | None:intergenic | 50.0% | |
TTTGGCACAGGGCAGTAACT+GGG | + | chr4_1:49706801-49706820 | None:intergenic | 50.0% | |
! | TTTTGGCACAGGGCAGTAAC+TGG | + | chr4_1:49706802-49706821 | None:intergenic | 50.0% |
! | TGATTTTTCCGTGTGCAGCC+TGG | - | chr4_1:49707231-49707250 | Msa0552930:intron | 50.0% |
! | GATTTTTCCGTGTGCAGCCT+GGG | - | chr4_1:49707232-49707251 | Msa0552930:intron | 50.0% |
CCGACAAGATCAAAACTCCC+AGG | + | chr4_1:49707252-49707271 | None:intergenic | 50.0% | |
CACAAGCTGGAGCAATAACC+AGG | + | chr4_1:49708034-49708053 | None:intergenic | 50.0% | |
CAGACGAATGGCTACAGGTA+TGG | - | chr4_1:49708203-49708222 | Msa0552930:intron | 50.0% | |
GAAGGAACGGTGAAGCGATG+AGG | + | chr4_1:49705089-49705108 | None:intergenic | 55.0% | |
GCTAGGTGCCAGTCAGATGA+AGG | - | chr4_1:49705874-49705893 | Msa0552930:intron | 55.0% | |
GTGCCAGTCAGATGAAGGTG+TGG | - | chr4_1:49705879-49705898 | Msa0552930:intron | 55.0% | |
! | AAAGTAGCTTGCGCTGAGGC+TGG | + | chr4_1:49707077-49707096 | None:intergenic | 55.0% |
! | TGGGAAAGTAGCTTGCGCTG+AGG | + | chr4_1:49707081-49707100 | None:intergenic | 55.0% |
CAAAACTCCCAGGCTGCACA+CGG | + | chr4_1:49707242-49707261 | None:intergenic | 55.0% | |
CATGAATCCATAGCCCCAGG+AGG | + | chr4_1:49707410-49707429 | None:intergenic | 55.0% | |
CTCCTGGGGCTATGGATTCA+TGG | - | chr4_1:49707408-49707427 | Msa0552930:CDS | 55.0% | |
GACCATGAATCCATAGCCCC+AGG | + | chr4_1:49707413-49707432 | None:intergenic | 55.0% | |
! | GGGGACTTTTCTCCTGCTCC+AGG | - | chr4_1:49705970-49705989 | Msa0552930:intron | 60.0% |
AGTTGCCCTCCTTGTCCTCC+TGG | - | chr4_1:49707392-49707411 | Msa0552930:CDS | 60.0% | |
GTTGCCCTCCTTGTCCTCCT+GGG | - | chr4_1:49707393-49707412 | Msa0552930:CDS | 60.0% | |
TTGCCCTCCTTGTCCTCCTG+GGG | - | chr4_1:49707394-49707413 | Msa0552930:CDS | 60.0% | |
TAGCCCCAGGAGGACAAGGA+GGG | + | chr4_1:49707400-49707419 | None:intergenic | 60.0% | |
ATAGCCCCAGGAGGACAAGG+AGG | + | chr4_1:49707401-49707420 | None:intergenic | 60.0% | |
TCCTTGTCCTCCTGGGGCTA+TGG | - | chr4_1:49707400-49707419 | Msa0552930:CDS | 60.0% | |
TCCATAGCCCCAGGAGGACA+AGG | + | chr4_1:49707404-49707423 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 49704978 | 49708883 | 49704978 | ID=Msa0552930;Name=Msa0552930 |
chr4_1 | mRNA | 49704978 | 49708883 | 49704978 | ID=Msa0552930-mRNA-1;Parent=Msa0552930;Name=Msa0552930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|8|478|258 |
chr4_1 | exon | 49704978 | 49705506 | 49704978 | ID=Msa0552930-mRNA-1:exon:14031;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49705642 | 49705713 | 49705642 | ID=Msa0552930-mRNA-1:exon:14030;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49706409 | 49706612 | 49706409 | ID=Msa0552930-mRNA-1:exon:14029;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49706731 | 49706808 | 49706731 | ID=Msa0552930-mRNA-1:exon:14028;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49707383 | 49707471 | 49707383 | ID=Msa0552930-mRNA-1:exon:14027;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49707678 | 49707728 | 49707678 | ID=Msa0552930-mRNA-1:exon:14026;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49707828 | 49707989 | 49707828 | ID=Msa0552930-mRNA-1:exon:14025;Parent=Msa0552930-mRNA-1 |
chr4_1 | exon | 49708750 | 49708883 | 49708750 | ID=Msa0552930-mRNA-1:exon:14024;Parent=Msa0552930-mRNA-1 |
chr4_1 | five_prime_UTR | 49708820 | 49708883 | 49708820 | ID=Msa0552930-mRNA-1:five_prime_utr;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49708750 | 49708819 | 49708750 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49707828 | 49707989 | 49707828 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49707678 | 49707728 | 49707678 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49707383 | 49707471 | 49707383 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49706731 | 49706808 | 49706731 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49706409 | 49706612 | 49706409 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49705642 | 49705713 | 49705642 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | CDS | 49705456 | 49705506 | 49705456 | ID=Msa0552930-mRNA-1:cds;Parent=Msa0552930-mRNA-1 |
chr4_1 | three_prime_UTR | 49704978 | 49705455 | 49704978 | ID=Msa0552930-mRNA-1:three_prime_utr;Parent=Msa0552930-mRNA-1 |
Gene Sequence |
Protein sequence |