AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173250 MtrunA17_Chr1g0192661 99.292 424 2 1 1 424 1 423 0.0 845
Msa0173250 MtrunA17_Chr7g0249551 64.183 349 123 1 10 356 9 357 7.47e-172 487
Msa0173250 MtrunA17_Chr4g0033731 61.538 351 135 0 1 351 1 351 1.44e-166 474
Msa0173250 MtrunA17_Chr8g0385501 38.795 415 185 14 1 353 1 408 1.97e-62 210
Msa0173250 MtrunA17_Chr3g0131441 36.408 412 196 14 1 353 1 405 4.62e-60 204
Msa0173250 MtrunA17_Chr3g0130481 87.755 49 4 2 376 424 30 76 1.70e-15 71.2
Msa0173250 MtrunA17_Chr3g0130491 85.294 34 5 0 324 357 16 49 1.53e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173250 AT1G09210.1 79.952 419 82 2 8 424 6 424 0.0 624
Msa0173250 AT1G56340.2 84.958 359 54 0 7 365 5 363 0.0 620
Msa0173250 AT1G56340.1 84.533 375 58 0 7 381 5 379 0.0 619
Msa0173250 AT1G08450.1 58.197 366 153 0 10 375 14 379 1.78e-165 472
Msa0173250 AT1G08450.3 52.732 366 148 1 10 375 14 354 5.57e-144 416
Msa0173250 AT1G08450.2 43.243 370 148 3 10 375 14 325 8.04e-105 315
Msa0173250 AT5G61790.1 38.384 396 185 12 10 353 13 401 9.26e-72 235
Msa0173250 AT5G07340.1 37.046 413 191 14 19 376 22 420 2.03e-57 197
Msa0173250 AT5G07340.2 37.592 407 184 15 25 376 37 428 4.26e-57 196

Find 150 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCTGGCTTCTTGTCTTC+AGG 0.169701 1_4:-58412809 None:intergenic
TTCAGTGCTGTGGGTAAATT+TGG 0.180938 1_4:-58410758 None:intergenic
TTCCATGGTCCCTTGTACTC+TGG 0.182700 1_4:-58413104 None:intergenic
GTTCATGCTTGACAGAAAAT+TGG 0.241397 1_4:-58412198 None:intergenic
GCTACTTTAAGCTAATTCTT+TGG 0.257839 1_4:-58414392 None:intergenic
TTATCCTTGTTGCTGAATTC+AGG 0.265305 1_4:-58412163 None:intergenic
ATGTACGTCGTCCTCTTTAT+TGG 0.266525 1_4:-58413990 None:intergenic
TTCCACTTTCCACTGTAGTT+GGG 0.290555 1_4:-58413234 None:intergenic
TCAGGATCAGCAACCTCTTT+AGG 0.312415 1_4:-58412936 None:intergenic
TTCCATTGCAATGGCGATTA+GGG 0.314157 1_4:+58410883 Msa0173250:exon
AGAACGAGAGAGAGAAGGTT+AGG 0.314409 1_4:-58410914 None:intergenic
CTTCCACTTTCCACTGTAGT+TGG 0.316605 1_4:-58413235 None:intergenic
GATGTTGATCAGAAGAAATT+TGG 0.323562 1_4:+58412265 Msa0173250:CDS
GTTGCTAAGTCAGTTGAATT+AGG 0.324855 1_4:+58414588 Msa0173250:three_prime_UTR
CCTCTGGCTTCTTGTCTTCA+GGG 0.335164 1_4:-58412808 None:intergenic
ATTCCATTGCAATGGCGATT+AGG 0.335328 1_4:+58410882 Msa0173250:exon
CTACTTTAAGCTAATTCTTT+GGG 0.344293 1_4:-58414391 None:intergenic
CAAGGACCCAGAGGCCAAAA+AGG 0.346525 1_4:+58412653 Msa0173250:CDS
GGCTTCTTGTCTTCAGGGTC+AGG 0.351167 1_4:-58412803 None:intergenic
AATAAGCTGAAACAGTCTAA+TGG 0.351518 1_4:-58414266 None:intergenic
TCCTTATCATCCCAATCTTC+TGG 0.358229 1_4:-58412773 None:intergenic
GTACTGTAACCACAGATATC+TGG 0.359127 1_4:-58412429 None:intergenic
TGCTGATCCTGATGCCAAAA+AGG 0.359945 1_4:+58412947 Msa0173250:CDS
TTTCAACGGTCTGCTTATCT+AGG 0.361099 1_4:-58414209 None:intergenic
TCCATGGTCCCTTGTACTCT+GGG 0.365819 1_4:-58413103 None:intergenic
TCGCAGAAGCGATGGATAGA+AGG 0.367240 1_4:-58410943 None:intergenic
TTAACTTTGCAGGTGAAATC+TGG 0.376979 1_4:+58413518 Msa0173250:intron
TTGTTTGCAGGATGAGCTCT+AGG 0.388195 1_4:+58414092 Msa0173250:intron
ATAAGCTGAAACAGTCTAAT+GGG 0.401553 1_4:-58414265 None:intergenic
TATATATTTACCAGACTTCA+AGG 0.404034 1_4:+58413361 Msa0173250:intron
CATTGTTTCTTTCAGTGCTG+TGG 0.408672 1_4:-58410768 None:intergenic
AGCAACTTGCTTAGCATACT+CGG 0.412572 1_4:-58413576 None:intergenic
GAACATCCTTCTTGATTAAG+TGG 0.416832 1_4:-58412491 None:intergenic
AATGAGAGTGAGAGCTACTT+TGG 0.420398 1_4:-58410833 None:intergenic
ATGCCAACATACTTCAACTT+GGG 0.437777 1_4:-58413407 None:intergenic
TTGCAATGGCGATTAGGGTT+CGG 0.442463 1_4:+58410888 Msa0173250:exon
TATCCTTGTTGCTGAATTCA+GGG 0.448897 1_4:-58412162 None:intergenic
ATAAAATCTGTAATCTTCAC+TGG 0.449401 1_4:-58412122 None:intergenic
AAACAAACCTTTGGCTTCCA+TGG 0.453885 1_4:-58413119 None:intergenic
AATACTTACAGCCAGAAGAT+TGG 0.454631 1_4:+58412762 Msa0173250:intron
AGAGTCATGGCTAACTTCAT+TGG 0.454725 1_4:-58413924 None:intergenic
ATACTTACAGCCAGAAGATT+GGG 0.460743 1_4:+58412763 Msa0173250:intron
TAAGTGGTTTGTGTCATTGT+AGG 0.461585 1_4:-58412475 None:intergenic
GCCAGAAGATTGGGATGATA+AGG 0.462026 1_4:+58412772 Msa0173250:intron
CATTGCCAACCCAGAGTACA+AGG 0.463149 1_4:+58413094 Msa0173250:CDS
ATTGTTTCTTTCAGTGCTGT+GGG 0.463564 1_4:-58410767 None:intergenic
TCCACTTTCCACTGTAGTTG+GGG 0.465244 1_4:-58413233 None:intergenic
CTGGTAGTCTTTACTCTGAC+TGG 0.467326 1_4:+58412607 Msa0173250:CDS
CGTTGATTCTGATGCGGAAG+AGG 0.469655 1_4:+58413889 Msa0173250:CDS
TACAACAGTAGCAAGTTAAG+AGG 0.470157 1_4:+58414687 Msa0173250:three_prime_UTR
TTGGGGAAAACATAGATGTC+AGG 0.470534 1_4:-58413389 None:intergenic
AGAAACATGGGGCAAGCAAA+AGG 0.486201 1_4:+58413601 Msa0173250:CDS
AGAAGGATGAGAACTTGGCC+GGG 0.487362 1_4:+58411931 Msa0173250:CDS
ATGAGAACTTGGCCGGGGAG+TGG 0.492077 1_4:+58411937 Msa0173250:CDS
AAAATGCTGTAGGTTGCATC+AGG 0.493543 1_4:-58412561 None:intergenic
CGCAGAAGCGATGGATAGAA+GGG 0.494372 1_4:-58410942 None:intergenic
TCCTCATCATCCCAGTCCTC+AGG 0.495577 1_4:-58413047 None:intergenic
GATAACGTTGAGAAGCAAAC+TGG 0.496012 1_4:+58412588 Msa0173250:CDS
TTCCCCAAGTTGAAGTATGT+TGG 0.497182 1_4:+58413404 Msa0173250:CDS
CTTGTACTCTGGGTTGGCAA+TGG 0.498402 1_4:-58413093 None:intergenic
TAGGGAGTTTGCAAAGCATA+TGG 0.499383 1_4:+58414111 Msa0173250:exon
GAAAACCTTCGCAGAAGCGA+TGG 0.502839 1_4:-58410951 None:intergenic
AGCAAGTTGCTGAAGAAACA+TGG 0.506018 1_4:+58413588 Msa0173250:CDS
TATGTTCTTGCAGGCTGAGA+AGG 0.508527 1_4:+58413703 Msa0173250:intron
TTCTTCGAAGAGCGCTTCGA+AGG 0.509596 1_4:+58410971 Msa0173250:CDS
TTCTGATGCGGAAGAGGATG+AGG 0.510129 1_4:+58413895 Msa0173250:CDS
ATGGAAGAAGGATGAGAACT+TGG 0.515979 1_4:+58411926 Msa0173250:CDS
TCTATCCATCGCTTCTGCGA+AGG 0.516389 1_4:+58410946 Msa0173250:CDS
AAGAAGGATGAGAACTTGGC+CGG 0.516801 1_4:+58411930 Msa0173250:CDS
AAAAGATATAACTTCGACTC+CGG 0.516839 1_4:-58414162 None:intergenic
AATGCCAACATACTTCAACT+TGG 0.516939 1_4:-58413408 None:intergenic
GGAACTACACCTCTGGTCAA+TGG 0.518922 1_4:+58411958 Msa0173250:CDS
CTCTTCCGCATCAGAATCAA+CGG 0.521513 1_4:-58413888 None:intergenic
TTCAGGGAACTCAGCAGAGA+TGG 0.522780 1_4:-58412146 None:intergenic
GGTAAAATCTGAATGGAAGA+AGG 0.524814 1_4:+58411914 Msa0173250:CDS
TGGTCCCTTGTACTCTGGGT+TGG 0.525060 1_4:-58413099 None:intergenic
GAACGAGAGAGAGAAGGTTA+GGG 0.525740 1_4:-58410913 None:intergenic
AAACCTGGGTTGTCAATCAA+TGG 0.532475 1_4:-58413261 None:intergenic
TTACGTGGATGTTGCTTACG+TGG 0.533140 1_4:-58410731 None:intergenic
TGTTGTGTAGCCTGAGGACT+GGG 0.537049 1_4:+58413037 Msa0173250:intron
AACCCTAATCGCCATTGCAA+TGG 0.540276 1_4:-58410885 None:intergenic
TCTTCCGCATCAGAATCAAC+GGG 0.545764 1_4:-58413887 None:intergenic
CACAAACCACTTAATCAAGA+AGG 0.545807 1_4:+58412485 Msa0173250:CDS
GGGGAGTGGAACTACACCTC+TGG 0.546989 1_4:+58411951 Msa0173250:CDS
GCAACTTGCTTAGCATACTC+GGG 0.550973 1_4:-58413575 None:intergenic
GAATTAGCTTAAAGTAGCTA+TGG 0.551620 1_4:+58414397 Msa0173250:three_prime_UTR
CTAAAGATGGATGGGAAAGC+CGG 0.553813 1_4:+58411889 Msa0173250:intron
GCCGGTGGGTAAAATCTGAA+TGG 0.553831 1_4:+58411907 Msa0173250:CDS
GTTATCAATCAAAATGCTGT+AGG 0.554637 1_4:-58412571 None:intergenic
TGTTTGCAGGATGAGCTCTA+GGG 0.555016 1_4:+58414093 Msa0173250:intron
TGTTGAATGCTAAAGATGGA+TGG 0.555665 1_4:+58411880 Msa0173250:intron
ACCCCAACTACAGTGGAAAG+TGG 0.558201 1_4:+58413232 Msa0173250:CDS
TTGTTGTGTAGCCTGAGGAC+TGG 0.566755 1_4:+58413036 Msa0173250:intron
CAGCGATGAAACCAATAAAG+AGG 0.572191 1_4:+58413979 Msa0173250:CDS
CTTAGCATACTCGGGATCAT+CGG 0.572247 1_4:-58413567 None:intergenic
AGAAAAGAACGAGAGAGAGA+AGG 0.573982 1_4:-58410919 None:intergenic
TGACTCTGATGATGAGTCAA+AGG 0.575775 1_4:+58413940 Msa0173250:CDS
ATACGATGACATTCCTAAAG+AGG 0.576967 1_4:+58412923 Msa0173250:CDS
GATATTATAAATCACCTGTA+GGG 0.577404 1_4:-58412298 None:intergenic
TCTCCCACCAAAGAAAATCA+AGG 0.577520 1_4:+58412635 Msa0173250:CDS
TTGGCGGTGATACTCCCTAC+AGG 0.578535 1_4:+58412284 Msa0173250:CDS
GTTGAATGCTAAAGATGGAT+GGG 0.579079 1_4:+58411881 Msa0173250:intron
CAGAAACTTGACTGTGGTGG+TGG 0.579680 1_4:+58412220 Msa0173250:CDS
GTTGATCAGAAGAAATTTGG+CGG 0.581881 1_4:+58412268 Msa0173250:CDS
GGAATATTTCCAGCTAGCAA+TGG 0.582398 1_4:+58414635 Msa0173250:three_prime_UTR
AGAGGTGTAGTTCCACTCCC+CGG 0.582515 1_4:-58411949 None:intergenic
AACTCATTGTCAGGAAACAA+AGG 0.583402 1_4:+58413859 Msa0173250:intron
AGCTGAGAAGAAGAAAGAAG+AGG 0.584374 1_4:+58413739 Msa0173250:CDS
GGTTACATGAAGTTGCTTAG+CGG 0.587170 1_4:+58412241 Msa0173250:CDS
GCAAGTTGCTGAAGAAACAT+GGG 0.587236 1_4:+58413589 Msa0173250:CDS
TGTTTGGTTAAATCATAACA+TGG 0.587263 1_4:-58414494 None:intergenic
TGCTGTAGGTTGCATCAGGA+CGG 0.587388 1_4:-58412557 None:intergenic
GATGAGTCAAAGGCAGAAGC+TGG 0.589511 1_4:+58413950 Msa0173250:CDS
GACTGGGATGATGAGGAAGA+TGG 0.589626 1_4:+58413053 Msa0173250:CDS
AGCGAGCGATTCCATTGCAA+TGG 0.589635 1_4:+58410874 Msa0173250:exon
TGTTGGCATTGAATTGTGGC+AGG 0.591537 1_4:+58413421 Msa0173250:CDS
GAAGGATGAGAACTTGGCCG+GGG 0.593588 1_4:+58411932 Msa0173250:CDS
TTGACTCATCATCAGAGTCA+TGG 0.601599 1_4:-58413937 None:intergenic
ACGATTTACAGATTCATGAT+CGG 0.602315 1_4:-58414355 None:intergenic
TACTCTGGGTTGGCAATGGT+AGG 0.604644 1_4:-58413089 None:intergenic
TACACCTCTGGTCAATGGAA+TGG 0.606107 1_4:+58411963 Msa0173250:CDS
TGCCAACATACTTCAACTTG+GGG 0.607807 1_4:-58413406 None:intergenic
AAGATGGATGGGAAAGCCGG+TGG 0.610833 1_4:+58411892 Msa0173250:intron
TGCAAAGCATATGGCATATG+CGG 0.612393 1_4:+58414120 Msa0173250:three_prime_UTR
TGAGAAGAAGAAAGAAGAGG+AGG 0.621039 1_4:+58413742 Msa0173250:CDS
GGTAAATTTGGTAATTTACG+TGG 0.621247 1_4:-58410746 None:intergenic
GCCTGAGGACTGGGATGATG+AGG 0.621427 1_4:+58413046 Msa0173250:intron
CAACTACAGTGGAAAGTGGA+AGG 0.622242 1_4:+58413236 Msa0173250:CDS
TGGGGAAAACATAGATGTCA+GGG 0.628802 1_4:-58413388 None:intergenic
ATGTGTAAACATGAGTAAGC+TGG 0.631281 1_4:-58412527 None:intergenic
ATCAAGAACCCCAACTACAG+TGG 0.637028 1_4:+58413225 Msa0173250:CDS
ACCCAGAGTACAAGGGACCA+TGG 0.641246 1_4:+58413102 Msa0173250:CDS
GTAAGCTGGTCAGTCTCACA+AGG 0.646980 1_4:-58412513 None:intergenic
AGTATGTTGGCATTGAATTG+TGG 0.647006 1_4:+58413417 Msa0173250:CDS
ATGATGAGGAAGATGGTGAG+TGG 0.647034 1_4:+58413060 Msa0173250:CDS
AATGGTGACGCTAATGACAA+AGG 0.650029 1_4:+58411981 Msa0173250:CDS
ATGTTTGGTCCAGATATCTG+TGG 0.653875 1_4:+58412420 Msa0173250:CDS
CAAGGGACCATGGAAGCCAA+AGG 0.658097 1_4:+58413112 Msa0173250:CDS
TAATTCAACTGACTTAGCAA+CGG 0.662594 1_4:-58414586 None:intergenic
TGATCCCGTTGATTCTGATG+CGG 0.665412 1_4:+58413883 Msa0173250:CDS
GCACCATTGATTGACAACCC+AGG 0.669589 1_4:+58413258 Msa0173250:CDS
AAAGAAAATCAAGGACCCAG+AGG 0.673165 1_4:+58412644 Msa0173250:CDS
GTTCCCTGAATTCAGCAACA+AGG 0.674436 1_4:+58412159 Msa0173250:CDS
AGATGGATGGGAAAGCCGGT+GGG 0.676998 1_4:+58411893 Msa0173250:intron
CCCTGAAGACAAGAAGCCAG+AGG 0.683823 1_4:+58412808 Msa0173250:CDS
CAAGTTGCTGAAGAAACATG+GGG 0.696192 1_4:+58413590 Msa0173250:CDS
GTCACCATTCCATTGACCAG+AGG 0.697163 1_4:-58411967 None:intergenic
ATTGCCAACCCAGAGTACAA+GGG 0.731176 1_4:+58413095 Msa0173250:CDS
GAACAGAAACTTGACTGTGG+TGG 0.776860 1_4:+58412217 Msa0173250:CDS
CATGAACAGAAACTTGACTG+TGG 0.796573 1_4:+58412214 Msa0173250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATTTGATTTTTTTCAA+AGG + chr1_4:58414614-58414633 Msa0173250:three_prime_UTR 15.0%
!! ATGAAATGAAAAAAGAGATA+TGG - chr1_4:58411011-58411030 None:intergenic 20.0%
!! ACATTCATGTTTGTAATTTA+TGG + chr1_4:58411063-58411082 Msa0173250:intron 20.0%
!! AATTTGCAGTGATAATATTA+TGG - chr1_4:58411716-58411735 None:intergenic 20.0%
!! TCAAAACACAAGTTAAAAAA+GGG - chr1_4:58411853-58411872 None:intergenic 20.0%
!! ATCAAAACACAAGTTAAAAA+AGG - chr1_4:58411854-58411873 None:intergenic 20.0%
!! ATGATTAGAAATTAGAAAGT+AGG - chr1_4:58412736-58412755 None:intergenic 20.0%
!! ATAATATAATGAGAGATGAA+TGG - chr1_4:58412996-58413015 None:intergenic 20.0%
!! ATTCATCTCTCATTATATTA+TGG + chr1_4:58412995-58413014 Msa0173250:intron 20.0%
!! TGATATATTGCAATATGTTT+AGG + chr1_4:58413158-58413177 Msa0173250:intron 20.0%
!!! TTGATTTGTTTACTAACTTT+TGG + chr1_4:58413183-58413202 Msa0173250:intron 20.0%
! TGAAAAAAGAGATATGGAAA+TGG - chr1_4:58411005-58411024 None:intergenic 25.0%
!!! ATGTTGATTTGAAAACGATT+TGG + chr1_4:58411260-58411279 Msa0173250:intron 25.0%
! GGTTAATTAATCTTTGATCA+TGG + chr1_4:58411294-58411313 Msa0173250:intron 25.0%
! GGATTGTAAACAAAATGAAA+TGG - chr1_4:58411366-58411385 None:intergenic 25.0%
!! CAATCCTTTTAATCTCATTT+CGG + chr1_4:58411380-58411399 Msa0173250:intron 25.0%
! AAAACTACCATTCTTTAATC+CGG - chr1_4:58411439-58411458 None:intergenic 25.0%
! AATTTGATCTAATCCAAACA+AGG + chr1_4:58411690-58411709 Msa0173250:intron 25.0%
! ATACTAAATAAACTCGAACA+TGG - chr1_4:58411785-58411804 None:intergenic 25.0%
! AAAAAGGGGAAAATATTGAT+TGG - chr1_4:58411838-58411857 None:intergenic 25.0%
! CAAAACACAAGTTAAAAAAG+GGG - chr1_4:58411852-58411871 None:intergenic 25.0%
! ATTATGTTGAATGCTAAAGA+TGG + chr1_4:58411876-58411895 Msa0173250:intron 25.0%
! ATAAAATCTGTAATCTTCAC+TGG - chr1_4:58412125-58412144 None:intergenic 25.0%
! GATATTATAAATCACCTGTA+GGG - chr1_4:58412301-58412320 None:intergenic 25.0%
! TGAAAGAGATAAAACTAGAA+GGG - chr1_4:58412323-58412342 None:intergenic 25.0%
!! TAATTTTGCAGTATCATGTT+TGG + chr1_4:58412405-58412424 Msa0173250:intron 25.0%
! TACATAAAACAAAAGGAATC+TGG - chr1_4:58412711-58412730 None:intergenic 25.0%
! GTAGGAATACATAAAACAAA+AGG - chr1_4:58412718-58412737 None:intergenic 25.0%
! ATACAAAAGCTTAGAGTAAA+AGG - chr1_4:58412839-58412858 None:intergenic 25.0%
! TATCTAATACACAACATAGT+AGG - chr1_4:58412875-58412894 None:intergenic 25.0%
! TATATATTTACCAGACTTCA+AGG + chr1_4:58413361-58413380 Msa0173250:intron 25.0%
!! TTTCTATTCACTCAATCTTT+TGG + chr1_4:58413635-58413654 Msa0173250:intron 25.0%
!!! CCATTAAGTTTTATTCCTTA+AGG - chr1_4:58413661-58413680 None:intergenic 25.0%
! CCTTAAGGAATAAAACTTAA+TGG + chr1_4:58413658-58413677 Msa0173250:intron 25.0%
! CTACTTTAAGCTAATTCTTT+GGG - chr1_4:58414394-58414413 None:intergenic 25.0%
! TGTTTGGTTAAATCATAACA+TGG - chr1_4:58414497-58414516 None:intergenic 25.0%
!!! ATGATTTTGTTTACGTTGTT+TGG - chr1_4:58414513-58414532 None:intergenic 25.0%
! TGTTTGGTTAAATCATAACA+TGG - chr1_4:58414497-58414516 None:intergenic 25.0%
! GGTAAATTTGGTAATTTACG+TGG - chr1_4:58410749-58410768 None:intergenic 30.0%
AATTACACAACAATGCAGAA+AGG - chr1_4:58411101-58411120 None:intergenic 30.0%
! TGTGATTGAATTTTCACGAT+CGG + chr1_4:58411128-58411147 Msa0173250:intron 30.0%
TCTTCCGAAATGAGATTAAA+AGG - chr1_4:58411387-58411406 None:intergenic 30.0%
ACAAACAGTTCATTAAAAGC+TGG - chr1_4:58411534-58411553 None:intergenic 30.0%
!! GATAATATTATGGCCTTGTT+TGG - chr1_4:58411706-58411725 None:intergenic 30.0%
!!! TTTCTTTCCTTTTTTCGTTG+AGG + chr1_4:58411754-58411773 Msa0173250:intron 30.0%
TGAATTGAAAGATGATACTG+AGG + chr1_4:58412058-58412077 Msa0173250:intron 30.0%
GATGTTGATCAGAAGAAATT+TGG + chr1_4:58412265-58412284 Msa0173250:CDS 30.0%
GGATATTATAAATCACCTGT+AGG - chr1_4:58412302-58412321 None:intergenic 30.0%
GTGAAAGAGATAAAACTAGA+AGG - chr1_4:58412324-58412343 None:intergenic 30.0%
GTTATCAATCAAAATGCTGT+AGG - chr1_4:58412574-58412593 None:intergenic 30.0%
ACTATAAACGTAGGTGAAAA+GGG - chr1_4:58412681-58412700 None:intergenic 30.0%
AACTATAAACGTAGGTGAAA+AGG - chr1_4:58412682-58412701 None:intergenic 30.0%
GGCAATTAAACTATAAACGT+AGG - chr1_4:58412690-58412709 None:intergenic 30.0%
TCTGACATTCTGTATTTGTA+GGG + chr1_4:58412900-58412919 Msa0173250:intron 30.0%
!!! TAACTTTTGGTGTTACATCT+TGG + chr1_4:58413196-58413215 Msa0173250:intron 30.0%
! TTAATGGATGTTGATCTCTT+TGG + chr1_4:58413674-58413693 Msa0173250:intron 30.0%
!!! AGTGAGCAAAAGTTTTATTC+CGG + chr1_4:58414143-58414162 Msa0173250:three_prime_UTR 30.0%
AAAAGATATAACTTCGACTC+CGG - chr1_4:58414165-58414184 None:intergenic 30.0%
ATAAGCTGAAACAGTCTAAT+GGG - chr1_4:58414268-58414287 None:intergenic 30.0%
AATAAGCTGAAACAGTCTAA+TGG - chr1_4:58414269-58414288 None:intergenic 30.0%
! AACAGACAACAATGTCTTTT+TGG + chr1_4:58414291-58414310 Msa0173250:three_prime_UTR 30.0%
ACGATTTACAGATTCATGAT+CGG - chr1_4:58414358-58414377 None:intergenic 30.0%
! GCTACTTTAAGCTAATTCTT+TGG - chr1_4:58414395-58414414 None:intergenic 30.0%
! GAATTAGCTTAAAGTAGCTA+TGG + chr1_4:58414397-58414416 Msa0173250:three_prime_UTR 30.0%
! TAATTCAACTGACTTAGCAA+CGG - chr1_4:58414589-58414608 None:intergenic 30.0%
! ATTGTTTCTTTCAGTGCTGT+GGG - chr1_4:58410770-58410789 None:intergenic 35.0%
CAAATCAACATCATCACGTT+CGG - chr1_4:58411251-58411270 None:intergenic 35.0%
!!! AACGATTTGGCACGTTTTTT+TGG + chr1_4:58411273-58411292 Msa0173250:intron 35.0%
TTTGAATTGTGTTGTGTGTC+CGG + chr1_4:58411417-58411436 Msa0173250:intron 35.0%
TTTGTCTCTGTTTGTGTGTA+AGG + chr1_4:58411477-58411496 Msa0173250:intron 35.0%
ATGCTATAAGCTGTGACTTA+CGG - chr1_4:58411662-58411681 None:intergenic 35.0%
! AAGGGGAAAATATTGATTGG+AGG - chr1_4:58411835-58411854 None:intergenic 35.0%
TGTTGAATGCTAAAGATGGA+TGG + chr1_4:58411880-58411899 Msa0173250:intron 35.0%
GTTGAATGCTAAAGATGGAT+GGG + chr1_4:58411881-58411900 Msa0173250:intron 35.0%
GGTAAAATCTGAATGGAAGA+AGG + chr1_4:58411914-58411933 Msa0173250:CDS 35.0%
!!! CAACCTTGTTTTATTGTTGC+TGG + chr1_4:58412026-58412045 Msa0173250:intron 35.0%
ACACCAGCAACAATAAAACA+AGG - chr1_4:58412032-58412051 None:intergenic 35.0%
TTGAAAGATGATACTGAGGT+TGG + chr1_4:58412062-58412081 Msa0173250:intron 35.0%
CAAATGTTTGATATCTCCAC+AGG + chr1_4:58412091-58412110 Msa0173250:intron 35.0%
TATCCTTGTTGCTGAATTCA+GGG - chr1_4:58412165-58412184 None:intergenic 35.0%
TTATCCTTGTTGCTGAATTC+AGG - chr1_4:58412166-58412185 None:intergenic 35.0%
GTTCATGCTTGACAGAAAAT+TGG - chr1_4:58412201-58412220 None:intergenic 35.0%
GTTGATCAGAAGAAATTTGG+CGG + chr1_4:58412268-58412287 Msa0173250:CDS 35.0%
!!! CAGAATAGCGTGTACTTTTT+TGG - chr1_4:58412454-58412473 None:intergenic 35.0%
! TAAGTGGTTTGTGTCATTGT+AGG - chr1_4:58412478-58412497 None:intergenic 35.0%
CACAAACCACTTAATCAAGA+AGG + chr1_4:58412485-58412504 Msa0173250:CDS 35.0%
GAACATCCTTCTTGATTAAG+TGG - chr1_4:58412494-58412513 None:intergenic 35.0%
ATGTGTAAACATGAGTAAGC+TGG - chr1_4:58412530-58412549 None:intergenic 35.0%
AATACTTACAGCCAGAAGAT+TGG + chr1_4:58412762-58412781 Msa0173250:intron 35.0%
ATACTTACAGCCAGAAGATT+GGG + chr1_4:58412763-58412782 Msa0173250:intron 35.0%
!! AGAGTAAAAGGTATTACCTC+TGG - chr1_4:58412827-58412846 None:intergenic 35.0%
CTAATACACAACATAGTAGG+TGG - chr1_4:58412872-58412891 None:intergenic 35.0%
CTCTGACATTCTGTATTTGT+AGG + chr1_4:58412899-58412918 Msa0173250:intron 35.0%
ATACGATGACATTCCTAAAG+AGG + chr1_4:58412923-58412942 Msa0173250:CDS 35.0%
! TGGGAAACAACTAACCTTTT+TGG - chr1_4:58412964-58412983 None:intergenic 35.0%
AATAATTGTTGTGTAGCCTG+AGG + chr1_4:58413031-58413050 Msa0173250:intron 35.0%
TTTCCACACAAACAAACCTT+TGG - chr1_4:58413131-58413150 None:intergenic 35.0%
TAACTTCAACTGCGAAAACA+AGG - chr1_4:58413296-58413315 None:intergenic 35.0%
ATGCCAACATACTTCAACTT+GGG - chr1_4:58413410-58413429 None:intergenic 35.0%
AATGCCAACATACTTCAACT+TGG - chr1_4:58413411-58413430 None:intergenic 35.0%
! AGTATGTTGGCATTGAATTG+TGG + chr1_4:58413417-58413436 Msa0173250:CDS 35.0%
ACTAAAACGCTCAAATCAAG+TGG - chr1_4:58413474-58413493 None:intergenic 35.0%
TTAACTTTGCAGGTGAAATC+TGG + chr1_4:58413518-58413537 Msa0173250:intron 35.0%
TGGTGAATATATGTTCTTGC+AGG + chr1_4:58413694-58413713 Msa0173250:intron 35.0%
AACTTCCTTAACTCATTGTC+AGG + chr1_4:58413850-58413869 Msa0173250:intron 35.0%
TGTTTCCTGACAATGAGTTA+AGG - chr1_4:58413858-58413877 None:intergenic 35.0%
AACTCATTGTCAGGAAACAA+AGG + chr1_4:58413859-58413878 Msa0173250:intron 35.0%
! TTTTCGCTTGCAGTTTTCAA+CGG - chr1_4:58414226-58414245 None:intergenic 35.0%
!! ATATTGACTCGTACGTTGTT+TGG - chr1_4:58414564-58414583 None:intergenic 35.0%
GTTGCTAAGTCAGTTGAATT+AGG + chr1_4:58414588-58414607 Msa0173250:three_prime_UTR 35.0%
TAGCAATGGATGAGAAAAAG+TGG + chr1_4:58414649-58414668 Msa0173250:three_prime_UTR 35.0%
TACAACAGTAGCAAGTTAAG+AGG + chr1_4:58414687-58414706 Msa0173250:three_prime_UTR 35.0%
TTCAGTGCTGTGGGTAAATT+TGG - chr1_4:58410761-58410780 None:intergenic 40.0%
! CATTGTTTCTTTCAGTGCTG+TGG - chr1_4:58410771-58410790 None:intergenic 40.0%
AATGAGAGTGAGAGCTACTT+TGG - chr1_4:58410836-58410855 None:intergenic 40.0%
ATTCCATTGCAATGGCGATT+AGG + chr1_4:58410882-58410901 Msa0173250:exon 40.0%
TTCCATTGCAATGGCGATTA+GGG + chr1_4:58410883-58410902 Msa0173250:exon 40.0%
AGAAAAGAACGAGAGAGAGA+AGG - chr1_4:58410922-58410941 None:intergenic 40.0%
TGTGTGTCCGGATTAAAGAA+TGG + chr1_4:58411429-58411448 Msa0173250:intron 40.0%
GGACTATCCTCAACGAAAAA+AGG - chr1_4:58411764-58411783 None:intergenic 40.0%
! TCCATTCAGATTTTACCCAC+CGG - chr1_4:58411911-58411930 None:intergenic 40.0%
ATGGAAGAAGGATGAGAACT+TGG + chr1_4:58411926-58411945 Msa0173250:CDS 40.0%
! AATGGTGACGCTAATGACAA+AGG + chr1_4:58411981-58412000 Msa0173250:CDS 40.0%
!! TTCACTGGTTTGAATACCTG+TGG - chr1_4:58412110-58412129 None:intergenic 40.0%
CATGAACAGAAACTTGACTG+TGG + chr1_4:58412214-58412233 Msa0173250:CDS 40.0%
GGTTACATGAAGTTGCTTAG+CGG + chr1_4:58412241-58412260 Msa0173250:CDS 40.0%
AGCTAACATGTGTCATGTCT+TGG + chr1_4:58412344-58412363 Msa0173250:intron 40.0%
ATGTTTGGTCCAGATATCTG+TGG + chr1_4:58412420-58412439 Msa0173250:CDS 40.0%
GTACTGTAACCACAGATATC+TGG - chr1_4:58412432-58412451 None:intergenic 40.0%
AAAATGCTGTAGGTTGCATC+AGG - chr1_4:58412564-58412583 None:intergenic 40.0%
GATAACGTTGAGAAGCAAAC+TGG + chr1_4:58412588-58412607 Msa0173250:CDS 40.0%
TCTCCCACCAAAGAAAATCA+AGG + chr1_4:58412635-58412654 Msa0173250:CDS 40.0%
! GGTCCTTGATTTTCTTTGGT+GGG - chr1_4:58412641-58412660 None:intergenic 40.0%
! TCTGGGTCCTTGATTTTCTT+TGG - chr1_4:58412645-58412664 None:intergenic 40.0%
AAAGAAAATCAAGGACCCAG+AGG + chr1_4:58412644-58412663 Msa0173250:CDS 40.0%
!!! AGGTGAAAAGGGTACCTTTT+TGG - chr1_4:58412670-58412689 None:intergenic 40.0%
TCCTTATCATCCCAATCTTC+TGG - chr1_4:58412776-58412795 None:intergenic 40.0%
!! CAACTAACCTTTTTGGCATC+AGG - chr1_4:58412957-58412976 None:intergenic 40.0%
AGATGAATGGACACAGCAAT+GGG - chr1_4:58412983-58413002 None:intergenic 40.0%
! AAACAAACCTTTGGCTTCCA+TGG - chr1_4:58413122-58413141 None:intergenic 40.0%
! AAGCCAAAGGTTTGTTTGTG+TGG + chr1_4:58413125-58413144 Msa0173250:intron 40.0%
TTCCACTTTCCACTGTAGTT+GGG - chr1_4:58413237-58413256 None:intergenic 40.0%
AAACCTGGGTTGTCAATCAA+TGG - chr1_4:58413264-58413283 None:intergenic 40.0%
CAAGGATGAAAAGCAAACCT+GGG - chr1_4:58413278-58413297 None:intergenic 40.0%
ACAAGGATGAAAAGCAAACC+TGG - chr1_4:58413279-58413298 None:intergenic 40.0%
TGGGGAAAACATAGATGTCA+GGG - chr1_4:58413391-58413410 None:intergenic 40.0%
TTGGGGAAAACATAGATGTC+AGG - chr1_4:58413392-58413411 None:intergenic 40.0%
! TTCCCCAAGTTGAAGTATGT+TGG + chr1_4:58413404-58413423 Msa0173250:CDS 40.0%
TGCCAACATACTTCAACTTG+GGG - chr1_4:58413409-58413428 None:intergenic 40.0%
! TGCAAAGTTAAGTAGCTTGC+TGG - chr1_4:58413509-58413528 None:intergenic 40.0%
AGCAAGCTACTTAACTTTGC+AGG + chr1_4:58413508-58413527 Msa0173250:intron 40.0%
! AGCAACTTGCTTAGCATACT+CGG - chr1_4:58413579-58413598 None:intergenic 40.0%
AGCAAGTTGCTGAAGAAACA+TGG + chr1_4:58413588-58413607 Msa0173250:CDS 40.0%
GCAAGTTGCTGAAGAAACAT+GGG + chr1_4:58413589-58413608 Msa0173250:CDS 40.0%
CAAGTTGCTGAAGAAACATG+GGG + chr1_4:58413590-58413609 Msa0173250:CDS 40.0%
!!! CACTCAATCTTTTGGCCTTA+AGG + chr1_4:58413643-58413662 Msa0173250:intron 40.0%
AGCTGAGAAGAAGAAAGAAG+AGG + chr1_4:58413739-58413758 Msa0173250:CDS 40.0%
TGAGAAGAAGAAAGAAGAGG+AGG + chr1_4:58413742-58413761 Msa0173250:CDS 40.0%
AGAGTCATGGCTAACTTCAT+TGG - chr1_4:58413927-58413946 None:intergenic 40.0%
TTGACTCATCATCAGAGTCA+TGG - chr1_4:58413940-58413959 None:intergenic 40.0%
! TGACTCTGATGATGAGTCAA+AGG + chr1_4:58413940-58413959 Msa0173250:CDS 40.0%
CAGCGATGAAACCAATAAAG+AGG + chr1_4:58413979-58413998 Msa0173250:CDS 40.0%
ATGTACGTCGTCCTCTTTAT+TGG - chr1_4:58413993-58414012 None:intergenic 40.0%
TCATCCTGCAAACAAAAGGA+GGG - chr1_4:58414087-58414106 None:intergenic 40.0%
TAGGGAGTTTGCAAAGCATA+TGG + chr1_4:58414111-58414130 Msa0173250:exon 40.0%
TGCAAAGCATATGGCATATG+CGG + chr1_4:58414120-58414139 Msa0173250:three_prime_UTR 40.0%
TTTCAACGGTCTGCTTATCT+AGG - chr1_4:58414212-58414231 None:intergenic 40.0%
GGAATATTTCCAGCTAGCAA+TGG + chr1_4:58414635-58414654 Msa0173250:three_prime_UTR 40.0%
! TTTTCTCATCCATTGCTAGC+TGG - chr1_4:58414647-58414666 None:intergenic 40.0%
AACCCTAATCGCCATTGCAA+TGG - chr1_4:58410888-58410907 None:intergenic 45.0%
TTGCAATGGCGATTAGGGTT+CGG + chr1_4:58410888-58410907 Msa0173250:exon 45.0%
GAACGAGAGAGAGAAGGTTA+GGG - chr1_4:58410916-58410935 None:intergenic 45.0%
AGAACGAGAGAGAGAAGGTT+AGG - chr1_4:58410917-58410936 None:intergenic 45.0%
TGATCTGAACTGTCGTTGTC+TGG + chr1_4:58411203-58411222 Msa0173250:intron 45.0%
TAAGCACCTGTGAGACTCTA+TGG + chr1_4:58411583-58411602 Msa0173250:intron 45.0%
GTTCTTCCATAGAGTCTCAC+AGG - chr1_4:58411592-58411611 None:intergenic 45.0%
CTAAAGATGGATGGGAAAGC+CGG + chr1_4:58411889-58411908 Msa0173250:intron 45.0%
AAGAAGGATGAGAACTTGGC+CGG + chr1_4:58411930-58411949 Msa0173250:CDS 45.0%
TACACCTCTGGTCAATGGAA+TGG + chr1_4:58411963-58411982 Msa0173250:CDS 45.0%
GTTCCCTGAATTCAGCAACA+AGG + chr1_4:58412159-58412178 Msa0173250:CDS 45.0%
GAACAGAAACTTGACTGTGG+TGG + chr1_4:58412217-58412236 Msa0173250:CDS 45.0%
CTGGTAGTCTTTACTCTGAC+TGG + chr1_4:58412607-58412626 Msa0173250:CDS 45.0%
! GGGTCCTTGATTTTCTTTGG+TGG - chr1_4:58412642-58412661 None:intergenic 45.0%
GCCAGAAGATTGGGATGATA+AGG + chr1_4:58412772-58412791 Msa0173250:intron 45.0%
TCAGGATCAGCAACCTCTTT+AGG - chr1_4:58412939-58412958 None:intergenic 45.0%
TGCTGATCCTGATGCCAAAA+AGG + chr1_4:58412947-58412966 Msa0173250:CDS 45.0%
GAGATGAATGGACACAGCAA+TGG - chr1_4:58412984-58413003 None:intergenic 45.0%
ATGATGAGGAAGATGGTGAG+TGG + chr1_4:58413060-58413079 Msa0173250:CDS 45.0%
ATTGCCAACCCAGAGTACAA+GGG + chr1_4:58413095-58413114 Msa0173250:CDS 45.0%
ATCAAGAACCCCAACTACAG+TGG + chr1_4:58413225-58413244 Msa0173250:CDS 45.0%
TCCACTTTCCACTGTAGTTG+GGG - chr1_4:58413236-58413255 None:intergenic 45.0%
CTTCCACTTTCCACTGTAGT+TGG - chr1_4:58413238-58413257 None:intergenic 45.0%
CAACTACAGTGGAAAGTGGA+AGG + chr1_4:58413236-58413255 Msa0173250:CDS 45.0%
! TGTTGGCATTGAATTGTGGC+AGG + chr1_4:58413421-58413440 Msa0173250:CDS 45.0%
CTTAGCATACTCGGGATCAT+CGG - chr1_4:58413570-58413589 None:intergenic 45.0%
! GCAACTTGCTTAGCATACTC+GGG - chr1_4:58413578-58413597 None:intergenic 45.0%
AGAAACATGGGGCAAGCAAA+AGG + chr1_4:58413601-58413620 Msa0173250:CDS 45.0%
TATGTTCTTGCAGGCTGAGA+AGG + chr1_4:58413703-58413722 Msa0173250:intron 45.0%
!! TGATCCCGTTGATTCTGATG+CGG + chr1_4:58413883-58413902 Msa0173250:CDS 45.0%
TCTTCCGCATCAGAATCAAC+GGG - chr1_4:58413890-58413909 None:intergenic 45.0%
CTCTTCCGCATCAGAATCAA+CGG - chr1_4:58413891-58413910 None:intergenic 45.0%
!! TTTCCCCTCCTTTTGTTTGC+AGG + chr1_4:58414080-58414099 Msa0173250:intron 45.0%
CATCCTGCAAACAAAAGGAG+GGG - chr1_4:58414086-58414105 None:intergenic 45.0%
CTCATCCTGCAAACAAAAGG+AGG - chr1_4:58414088-58414107 None:intergenic 45.0%
GAGCTCATCCTGCAAACAAA+AGG - chr1_4:58414091-58414110 None:intergenic 45.0%
TTGTTTGCAGGATGAGCTCT+AGG + chr1_4:58414092-58414111 Msa0173250:intron 45.0%
TGTTTGCAGGATGAGCTCTA+GGG + chr1_4:58414093-58414112 Msa0173250:intron 45.0%
AGCGAGCGATTCCATTGCAA+TGG + chr1_4:58410874-58410893 Msa0173250:exon 50.0%
CGCAGAAGCGATGGATAGAA+GGG - chr1_4:58410945-58410964 None:intergenic 50.0%
TCGCAGAAGCGATGGATAGA+AGG - chr1_4:58410946-58410965 None:intergenic 50.0%
TCTATCCATCGCTTCTGCGA+AGG + chr1_4:58410946-58410965 Msa0173250:CDS 50.0%
GAAAACCTTCGCAGAAGCGA+TGG - chr1_4:58410954-58410973 None:intergenic 50.0%
!! TTCTTCGAAGAGCGCTTCGA+AGG + chr1_4:58410971-58410990 Msa0173250:CDS 50.0%
GCCGGTGGGTAAAATCTGAA+TGG + chr1_4:58411907-58411926 Msa0173250:CDS 50.0%
AGAAGGATGAGAACTTGGCC+GGG + chr1_4:58411931-58411950 Msa0173250:CDS 50.0%
GGAACTACACCTCTGGTCAA+TGG + chr1_4:58411958-58411977 Msa0173250:CDS 50.0%
GTCACCATTCCATTGACCAG+AGG - chr1_4:58411970-58411989 None:intergenic 50.0%
TTCAGGGAACTCAGCAGAGA+TGG - chr1_4:58412149-58412168 None:intergenic 50.0%
CAGAAACTTGACTGTGGTGG+TGG + chr1_4:58412220-58412239 Msa0173250:CDS 50.0%
GTAAGCTGGTCAGTCTCACA+AGG - chr1_4:58412516-58412535 None:intergenic 50.0%
TGCTGTAGGTTGCATCAGGA+CGG - chr1_4:58412560-58412579 None:intergenic 50.0%
!! AGGGTACCTTTTTGGCCTCT+GGG - chr1_4:58412662-58412681 None:intergenic 50.0%
!!! AAGGGTACCTTTTTGGCCTC+TGG - chr1_4:58412663-58412682 None:intergenic 50.0%
! CCTCTGGCTTCTTGTCTTCA+GGG - chr1_4:58412811-58412830 None:intergenic 50.0%
! ACCTCTGGCTTCTTGTCTTC+AGG - chr1_4:58412812-58412831 None:intergenic 50.0%
TTGTTGTGTAGCCTGAGGAC+TGG + chr1_4:58413036-58413055 Msa0173250:intron 50.0%
TGTTGTGTAGCCTGAGGACT+GGG + chr1_4:58413037-58413056 Msa0173250:intron 50.0%
GACTGGGATGATGAGGAAGA+TGG + chr1_4:58413053-58413072 Msa0173250:CDS 50.0%
!! TACTCTGGGTTGGCAATGGT+AGG - chr1_4:58413092-58413111 None:intergenic 50.0%
!! CTTGTACTCTGGGTTGGCAA+TGG - chr1_4:58413096-58413115 None:intergenic 50.0%
CATTGCCAACCCAGAGTACA+AGG + chr1_4:58413094-58413113 Msa0173250:CDS 50.0%
TCCATGGTCCCTTGTACTCT+GGG - chr1_4:58413106-58413125 None:intergenic 50.0%
TTCCATGGTCCCTTGTACTC+TGG - chr1_4:58413107-58413126 None:intergenic 50.0%
ACCCCAACTACAGTGGAAAG+TGG + chr1_4:58413232-58413251 Msa0173250:CDS 50.0%
! GCACCATTGATTGACAACCC+AGG + chr1_4:58413258-58413277 Msa0173250:CDS 50.0%
!! CGTTGATTCTGATGCGGAAG+AGG + chr1_4:58413889-58413908 Msa0173250:CDS 50.0%
TTCTGATGCGGAAGAGGATG+AGG + chr1_4:58413895-58413914 Msa0173250:CDS 50.0%
GATGAGTCAAAGGCAGAAGC+TGG + chr1_4:58413950-58413969 Msa0173250:CDS 50.0%
AAGATGGATGGGAAAGCCGG+TGG + chr1_4:58411892-58411911 Msa0173250:intron 55.0%
AGATGGATGGGAAAGCCGGT+GGG + chr1_4:58411893-58411912 Msa0173250:intron 55.0%
GAAGGATGAGAACTTGGCCG+GGG + chr1_4:58411932-58411951 Msa0173250:CDS 55.0%
! AGAGGTGTAGTTCCACTCCC+CGG - chr1_4:58411952-58411971 None:intergenic 55.0%
TTGGCGGTGATACTCCCTAC+AGG + chr1_4:58412284-58412303 Msa0173250:CDS 55.0%
CAAGGACCCAGAGGCCAAAA+AGG + chr1_4:58412653-58412672 Msa0173250:CDS 55.0%
GGCTTCTTGTCTTCAGGGTC+AGG - chr1_4:58412806-58412825 None:intergenic 55.0%
CCCTGAAGACAAGAAGCCAG+AGG + chr1_4:58412808-58412827 Msa0173250:CDS 55.0%
TCCTCATCATCCCAGTCCTC+AGG - chr1_4:58413050-58413069 None:intergenic 55.0%
TGGTCCCTTGTACTCTGGGT+TGG - chr1_4:58413102-58413121 None:intergenic 55.0%
ACCCAGAGTACAAGGGACCA+TGG + chr1_4:58413102-58413121 Msa0173250:CDS 55.0%
CAAGGGACCATGGAAGCCAA+AGG + chr1_4:58413112-58413131 Msa0173250:CDS 55.0%
TCAGGGTCGTCCTTGAAGTC+TGG - chr1_4:58413374-58413393 None:intergenic 55.0%
ATGAGAACTTGGCCGGGGAG+TGG + chr1_4:58411937-58411956 Msa0173250:CDS 60.0%
GGGGAGTGGAACTACACCTC+TGG + chr1_4:58411951-58411970 Msa0173250:CDS 60.0%
GCCTGAGGACTGGGATGATG+AGG + chr1_4:58413046-58413065 Msa0173250:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58410733 58414714 58410733 ID=Msa0173250;Name=Msa0173250
chr1_4 mRNA 58410733 58414714 58410733 ID=Msa0173250-mRNA-1;Parent=Msa0173250;Name=Msa0173250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=160|1|1|1|0.92|0.85|14|550|424
chr1_4 exon 58410733 58410992 58410733 ID=Msa0173250-mRNA-1:exon:18097;Parent=Msa0173250-mRNA-1
chr1_4 exon 58411895 58412002 58411895 ID=Msa0173250-mRNA-1:exon:18098;Parent=Msa0173250-mRNA-1
chr1_4 exon 58412113 58412305 58412113 ID=Msa0173250-mRNA-1:exon:18099;Parent=Msa0173250-mRNA-1
chr1_4 exon 58412416 58412674 58412416 ID=Msa0173250-mRNA-1:exon:18100;Parent=Msa0173250-mRNA-1
chr1_4 exon 58412773 58412829 58412773 ID=Msa0173250-mRNA-1:exon:18101;Parent=Msa0173250-mRNA-1
chr1_4 exon 58412921 58412968 58412921 ID=Msa0173250-mRNA-1:exon:18102;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413047 58413133 58413047 ID=Msa0173250-mRNA-1:exon:18103;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413222 58413279 58413222 ID=Msa0173250-mRNA-1:exon:18104;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413375 58413442 58413375 ID=Msa0173250-mRNA-1:exon:18105;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413530 58413625 58413530 ID=Msa0173250-mRNA-1:exon:18106;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413716 58413763 58413716 ID=Msa0173250-mRNA-1:exon:18107;Parent=Msa0173250-mRNA-1
chr1_4 exon 58413872 58414012 58413872 ID=Msa0173250-mRNA-1:exon:18108;Parent=Msa0173250-mRNA-1
chr1_4 exon 58414102 58414518 58414102 ID=Msa0173250-mRNA-1:exon:18109;Parent=Msa0173250-mRNA-1
chr1_4 exon 58414570 58414714 58414570 ID=Msa0173250-mRNA-1:exon:18110;Parent=Msa0173250-mRNA-1
chr1_4 five_prime_UTR 58410733 58410892 58410733 ID=Msa0173250-mRNA-1:five_prime_utr;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58410893 58410992 58410893 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58411895 58412002 58411895 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58412113 58412305 58412113 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58412416 58412674 58412416 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58412773 58412829 58412773 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58412921 58412968 58412921 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413047 58413133 58413047 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413222 58413279 58413222 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413375 58413442 58413375 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413530 58413625 58413530 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413716 58413763 58413716 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58413872 58414012 58413872 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 CDS 58414102 58414113 58414102 ID=Msa0173250-mRNA-1:cds;Parent=Msa0173250-mRNA-1
chr1_4 three_prime_UTR 58414114 58414518 58414114 ID=Msa0173250-mRNA-1:three_prime_utr;Parent=Msa0173250-mRNA-1
chr1_4 three_prime_UTR 58414570 58414714 58414570 ID=Msa0173250-mRNA-1:three_prime_utr;Parent=Msa0173250-mRNA-1
Gene Sequence

>Msa0173250

ATGGCGATTAGGGTTCGGAACCCTAACCTTCTCTCTCTCGTTCTTTTCTCCCTTCTATCCATCGCTTCTGCGAAGGTTTTCTTCGAAGAGCGCTTCGAAGATGGATGGGAAAGCCGGTGGGTAAAATCTGAATGGAAGAAGGATGAGAACTTGGCCGGGGAGTGGAACTACACCTCTGGTCAATGGAATGGTGACGCTAATGACAAAGGTATTCAAACCAGTGAAGATTACAGATTTTATGCCATCTCTGCTGAGTTCCCTGAATTCAGCAACAAGGATAACACACTAGTCTTCCAATTTTCTGTCAAGCATGAACAGAAACTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGCGGCGATGTTGATCAGAAGAAATTTGGCGGTGATACTCCCTACAGTATCATGTTTGGTCCAGATATCTGTGGTTACAGTACCAAAAAAGTACACGCTATTCTGACCTACAATGACACAAACCACTTAATCAAGAAGGATGTTCCTTGTGAGACTGACCAGCTTACTCATGTTTACACATTCATCATCCGTCCTGATGCAACCTACAGCATTTTGATTGATAACGTTGAGAAGCAAACTGGTAGTCTTTACTCTGACTGGAGTCTTCTCCCACCAAAGAAAATCAAGGACCCAGAGGCCAAAAAGCCAGAAGATTGGGATGATAAGGAGTTTATTCCTGACCCTGAAGACAAGAAGCCAGAGGGATACGATGACATTCCTAAAGAGGTTGCTGATCCTGATGCCAAAAAGCCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACAGCACCTACCATTGCCAACCCAGAGTACAAGGGACCATGGAAGCCAAAGAAAATCAAGAACCCCAACTACAGTGGAAAGTGGAAGGCACCATTGATTGACAACCCAGACTTCAAGGACGACCCTGACATCTATGTTTTCCCCAAGTTGAAGTATGTTGGCATTGAATTGTGGCAGGTGAAATCTGGTACATTGTTTGACAATGTTGTCATTACCGATGATCCCGAGTATGCTAAGCAAGTTGCTGAAGAAACATGGGGCAAGCAAAAGGATGCTGAGAAGGCAGCGTTTGAAGAAGCTGAGAAGAAGAAAGAAGAGGAGGAAACAAAGGATGATCCCGTTGATTCTGATGCGGAAGAGGATGAGGAAGATGCCAATGAAGTTAGCCATGACTCTGATGATGAGTCAAAGGCAGAAGCTGGTGAAGACAGCGATGAAACCAATAAAGAGGACGACGTACATGATGAGCTCTAG
Protein sequence

>Msa0173250

MAIRVRNPNLLSLVLFSLLSIASAKVFFEERFEDGWESRWVKSEWKKDENLAGEWNYTSGQWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNDTNHLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNVEKQTGSLYSDWSLLPPKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPKEVADPDAKKPEDWDDEEDGEWTAPTIANPEYKGPWKPKKIKNPNYSGKWKAPLIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTLFDNVVITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKKKEEEETKDDPVDSDAEEDEEDANEVSHDSDDESKAEAGEDSDETNKEDDVHDEL*