AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553070 MtrunA17_Chr4g0038651 99.104 558 5 0 1 558 1 558 0.0 1145
Msa0553070 MtrunA17_Chr7g0240501 60.656 427 157 6 85 506 182 602 1.76e-175 511
Msa0553070 MtrunA17_Chr3g0112731 57.991 438 169 5 82 513 95 523 3.73e-175 508
Msa0553070 MtrunA17_Chr5g0436141 57.895 418 165 4 89 503 84 493 1.06e-167 488
Msa0553070 MtrunA17_Chr4g0008771 62.534 371 133 2 85 453 94 460 2.23e-160 468
Msa0553070 MtrunA17_Chr4g0004771 55.769 364 142 5 87 449 90 435 5.89e-140 416
Msa0553070 MtrunA17_Chr8g0348921 53.886 386 157 6 82 452 90 469 4.56e-137 406
Msa0553070 MtrunA17_Chr2g0331631 51.813 386 168 6 68 452 68 436 4.70e-133 398
Msa0553070 MtrunA17_Chr6g0485861 50.886 395 174 6 86 479 95 470 7.39e-132 395
Msa0553070 MtrunA17_Chr7g0247761 48.941 425 155 5 83 451 109 527 5.15e-126 380
Msa0553070 MtrunA17_Chr5g0408591 47.107 363 184 3 86 448 117 471 1.50e-111 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553070 AT4G38430.1 69.772 569 140 13 1 558 1 548 0.0 738
Msa0553070 AT5G02010.1 60.143 419 154 5 80 496 63 470 1.15e-177 513
Msa0553070 AT5G05940.1 56.920 448 180 6 81 518 96 540 1.76e-177 514
Msa0553070 AT5G05940.2 61.290 341 126 2 81 416 96 435 2.64e-150 441
Msa0553070 AT3G55660.1 52.283 438 182 7 84 502 104 533 1.77e-147 437
Msa0553070 AT4G00460.2 55.496 373 153 6 87 452 104 470 2.88e-139 412
Msa0553070 AT4G00460.4 55.496 373 153 6 87 452 104 470 2.88e-139 412
Msa0553070 AT1G01700.1 54.032 372 160 5 87 452 116 482 1.60e-131 392
Msa0553070 AT4G13240.1 49.878 409 174 6 80 474 67 458 2.39e-130 390
Msa0553070 AT1G52240.1 55.096 363 140 6 88 448 105 446 8.59e-129 387
Msa0553070 AT3G24620.1 53.168 363 152 5 87 448 85 430 1.22e-128 386
Msa0553070 AT1G79860.1 52.329 365 155 7 85 448 90 436 2.01e-128 385
Msa0553070 AT3G55660.2 55.425 341 137 5 84 416 104 437 2.13e-128 383
Msa0553070 AT1G01700.4 50.000 402 160 6 87 452 116 512 5.04e-125 377
Msa0553070 AT5G19560.1 51.220 369 164 7 86 453 43 396 1.69e-120 365
Msa0553070 AT5G19560.5 51.220 369 164 7 86 453 43 396 1.69e-120 365
Msa0553070 AT5G19560.4 51.220 369 164 7 86 453 62 415 5.86e-120 364
Msa0553070 AT2G45890.1 48.138 376 176 7 87 452 93 459 2.43e-119 360
Msa0553070 AT3G16130.1 49.176 364 169 5 86 448 89 437 4.75e-115 352
Msa0553070 AT4G00460.3 51.786 336 149 6 124 452 8 337 5.48e-115 345
Msa0553070 AT1G01700.3 50.000 350 157 6 87 423 116 460 4.03e-108 332
Msa0553070 AT5G19560.2 49.398 332 152 7 86 416 62 378 2.96e-102 313
Msa0553070 AT1G31650.2 41.370 365 201 5 87 448 108 462 1.97e-95 301
Msa0553070 AT1G31650.1 41.370 365 201 5 87 448 136 490 8.58e-95 301
Msa0553070 AT4G00460.1 58.333 216 87 2 87 299 104 319 2.95e-82 260
Msa0553070 AT5G19560.3 49.097 277 125 7 178 453 5 266 1.77e-80 257
Msa0553070 AT1G01700.5 56.944 216 90 2 87 299 116 331 1.19e-78 252
Msa0553070 AT1G01700.2 56.944 216 90 2 87 299 116 331 1.19e-78 252

Find 209 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCTGAATCTTAAAT+TGG 0.169189 4_1:+49847412 None:intergenic
GATTCTGGCCATTATGTTAA+AGG 0.205615 4_1:+49848217 None:intergenic
TCTAGAACTCAGTCTCTTTC+TGG 0.210377 4_1:+49847855 None:intergenic
GATTGTGTTGGGTGATTCTA+AGG 0.220759 4_1:-49849664 Msa0553070:CDS
ATAAGAGAAAATGATATAAA+TGG 0.228648 4_1:+49850821 None:intergenic
CAAATTGCTATGTAGAGTTT+TGG 0.254500 4_1:-49847444 Msa0553070:three_prime_UTR
CCATGGCAGCCTTAAGTATC+TGG 0.261590 4_1:+49849511 None:intergenic
CGACTGTGTTTGGTGAATTA+TGG 0.265683 4_1:-49849944 Msa0553070:CDS
GATTCAAAAGAAATACATTA+TGG 0.273300 4_1:-49847301 Msa0553070:three_prime_UTR
GATGATACTAAGTGCCTCTT+TGG 0.275526 4_1:+49847691 None:intergenic
CGAAGCCAACTTTCCGGCCT+TGG 0.278677 4_1:+49847944 None:intergenic
AGCTTGAAACGCCGATTTCC+TGG 0.282493 4_1:-49848804 Msa0553070:CDS
ATCAGTCGAAGCCAACTTTC+CGG 0.286787 4_1:+49847938 None:intergenic
TTGTTCGGCAGGGGAGGTTT+TGG 0.298685 4_1:-49848137 Msa0553070:CDS
TAGTTCTGTTCTTGCTGAAA+TGG 0.305090 4_1:-49849481 Msa0553070:CDS
GGGGAAAGCCAGACGGTCTT+GGG 0.310784 4_1:-49848904 Msa0553070:CDS
CCTTCTGTGCAACAATTTCC+AGG 0.323902 4_1:-49849828 Msa0553070:CDS
AACCCATTTGGTGGAAGCTT+TGG 0.329873 4_1:+49849582 None:intergenic
CGGGGAAAGCCAGACGGTCT+TGG 0.332922 4_1:-49848905 Msa0553070:CDS
GAGCTTAGCCTTTAACATAA+TGG 0.342778 4_1:-49848225 Msa0553070:CDS
CGCCGCTCATTTCAACTTGC+CGG 0.344030 4_1:-49850559 Msa0553070:CDS
TCTAAGGATTGTGATGATTA+TGG 0.346046 4_1:-49849648 Msa0553070:CDS
GATATGTCTGGTGGTGGAAA+AGG 0.352459 4_1:-49850286 Msa0553070:CDS
TACCTTATTATACTGTATCT+TGG 0.354569 4_1:+49848755 None:intergenic
TCGCCGCAGGTTTGCAAAAC+GGG 0.356696 4_1:+49847808 None:intergenic
GGCCAAGATACAGTATAATA+AGG 0.358263 4_1:-49848757 Msa0553070:intron
TTGCTGTTGTTGTAAAGAAA+TGG 0.358803 4_1:-49850733 Msa0553070:exon
TGGGAAAGATGTTGCTGTTT+GGG 0.363508 4_1:-49850505 Msa0553070:CDS
TTCTAGAGTTAGCATGTGTT+TGG 0.369446 4_1:-49847839 Msa0553070:three_prime_UTR
AGCAATGTGGCGTAGGGAAA+TGG 0.382299 4_1:-49849892 Msa0553070:CDS
TCTCCAAAGCTTCCACCAAA+TGG 0.384270 4_1:-49849585 Msa0553070:CDS
AAAATTACACCCTCATATAC+AGG 0.387419 4_1:+49847593 None:intergenic
AACACATTGAGACGCACGTT+TGG 0.387708 4_1:-49847730 Msa0553070:three_prime_UTR
TGTACCATTCCCTGTATATG+AGG 0.388484 4_1:-49847603 Msa0553070:three_prime_UTR
TACTAAGTGCCTCTTTGGTT+TGG 0.390216 4_1:+49847696 None:intergenic
ATATGTCTGGTGGTGGAAAA+GGG 0.392050 4_1:-49850285 Msa0553070:CDS
CTCAGCGCAAGAAGAAATTC+TGG 0.399210 4_1:-49847885 Msa0553070:CDS
TGTTCCTCCTCTCCTGTTAG+TGG 0.400070 4_1:-49848026 Msa0553070:CDS
CTATTCTTGAAAGTTATTCC+AGG 0.402654 4_1:-49848256 Msa0553070:CDS
TCCTCAAACAGCGCTAGATA+TGG 0.409212 4_1:-49848778 Msa0553070:CDS
CTGCAAGGACTCCCACTAAC+AGG 0.411730 4_1:+49848014 None:intergenic
GTGGGAAAGATGTTGCTGTT+TGG 0.414429 4_1:-49850506 Msa0553070:CDS
ATAAAGGACATCATCGATTC+TGG 0.415180 4_1:+49848202 None:intergenic
CTTTCCACCCCAAGACCGTC+TGG 0.421418 4_1:+49848896 None:intergenic
GACGGCGCAGGCTATGCTTC+CGG 0.425048 4_1:-49850535 Msa0553070:CDS
TAAGAGAAAATGATATAAAT+GGG 0.430598 4_1:+49850822 None:intergenic
CAGATTCTATCTTGTTCGGC+AGG 0.431004 4_1:-49848148 Msa0553070:CDS
AGCTTCTCTATTTCCACGTC+AGG 0.431442 4_1:-49847753 Msa0553070:three_prime_UTR
TTATAGTATCGTCTACATAA+AGG 0.435898 4_1:+49848186 None:intergenic
CCTGCATTGAAGAAGCTTGA+CGG 0.436172 4_1:-49849747 Msa0553070:CDS
CTCTGTCAGTGTTGTTGTTG+AGG 0.439826 4_1:+49850953 None:intergenic
ACACATTGAGACGCACGTTT+GGG 0.441992 4_1:-49847729 Msa0553070:three_prime_UTR
TTTGAGGAAGCCCAGGAAAT+CGG 0.442800 4_1:+49848793 None:intergenic
AGCTGAGCTGGAAGCTCCTT+CGG 0.443051 4_1:+49850602 None:intergenic
TGCTGTTGTTGTAAAGAAAT+GGG 0.444349 4_1:-49850732 Msa0553070:exon
CTCCAAAGCTTCCACCAAAT+GGG 0.444467 4_1:-49849584 Msa0553070:CDS
AGCATAGCCTGCGCCGTCGC+CGG 0.445981 4_1:+49850540 None:intergenic
TTGGGATCACAAACGTGACT+TGG 0.452605 4_1:-49850487 Msa0553070:CDS
ATGGGTTGTGTGAGGATGAT+AGG 0.453326 4_1:-49849566 Msa0553070:CDS
TCATCCTCACACAACCCATT+TGG 0.456886 4_1:+49849570 None:intergenic
GCTGCAGATTCTATCTTGTT+CGG 0.457807 4_1:-49848152 Msa0553070:CDS
GAGCCACTTTCTTGTCCAAC+GGG 0.458142 4_1:-49848844 Msa0553070:CDS
TGCAGAAGTTGAAATGATGA+AGG 0.459359 4_1:-49850338 Msa0553070:intron
AGAATGGTAAAGCTTGTCTT+GGG 0.459633 4_1:-49849088 Msa0553070:CDS
GTAGCAAAAGGAGAGGCATA+TGG 0.460266 4_1:+49848059 None:intergenic
GTAATTGCAGCGACTGTGTT+TGG 0.462379 4_1:-49849954 Msa0553070:intron
TGAATGTCTTCTTGACTGCC+TGG 0.463418 4_1:-49849024 Msa0553070:CDS
CTGTTAGGCAAGAAGAGAAA+TGG 0.465548 4_1:-49849617 Msa0553070:CDS
TCATTTCAACTTGCCGGCGA+CGG 0.465724 4_1:-49850553 Msa0553070:CDS
CAACTTGCCGGCGACGGCGC+AGG 0.470587 4_1:-49850547 Msa0553070:CDS
CAGAATGGTAAAGCTTGTCT+TGG 0.471373 4_1:-49849089 Msa0553070:CDS
TTAACATGGGTCATCGCCGC+AGG 0.475239 4_1:+49847795 None:intergenic
CAGGCTATGCTTCCGGTCAT+CGG 0.475533 4_1:-49850528 Msa0553070:CDS
ATCGCCGCAGGTTTGCAAAA+CGG 0.476337 4_1:+49847807 None:intergenic
GTTGATAGAGGGATTGTGTT+GGG 0.477945 4_1:-49849675 Msa0553070:CDS
ATTATGGTAGACCTTCTGTT+AGG 0.480466 4_1:-49849632 Msa0553070:CDS
TGTTGAATTGAGAAGGGGCT+GGG 0.481257 4_1:+49848086 None:intergenic
CCGTCAAGCTTCTTCAATGC+AGG 0.482835 4_1:+49849747 None:intergenic
TGAAAGTTATTCCAGGGTGA+TGG 0.483592 4_1:-49848249 Msa0553070:CDS
GTTCCTCCTCTCCTGTTAGT+GGG 0.489622 4_1:-49848025 Msa0553070:CDS
GTGCAACAATTTCCAGGTGG+TGG 0.490405 4_1:-49849822 Msa0553070:CDS
TGGCGAGAGATTAGCTGAGC+TGG 0.492120 4_1:+49850590 None:intergenic
GCCATATCTAGCGCTGTTTG+AGG 0.492418 4_1:+49848777 None:intergenic
GATTCTATCTTGTTCGGCAG+GGG 0.492862 4_1:-49848146 Msa0553070:CDS
AGATTCCAAGGCCGGAAAGT+TGG 0.493306 4_1:-49847949 Msa0553070:CDS
GTTTGGTGAATTATGGAGGT+TGG 0.496317 4_1:-49849937 Msa0553070:CDS
CCTGGAAATTGTTGCACAGA+AGG 0.500430 4_1:+49849828 None:intergenic
CAGAATTTCTTCTTGCGCTG+AGG 0.503230 4_1:+49847886 None:intergenic
TGTGTAGGCGTCATTGACTA+TGG 0.503238 4_1:+49847366 None:intergenic
TTGAGGCTGCTATACATGTA+TGG 0.504433 4_1:-49848959 Msa0553070:CDS
TAGCAAAAGGAGAGGCATAT+GGG 0.505390 4_1:+49848060 None:intergenic
GTGTTGAATTGAGAAGGGGC+TGG 0.507650 4_1:+49848085 None:intergenic
GTACCATTCCCTGTATATGA+GGG 0.509025 4_1:-49847602 Msa0553070:three_prime_UTR
GCTTGAAACGCCGATTTCCT+GGG 0.512807 4_1:-49848803 Msa0553070:CDS
TTCTCTTCTTGCCTAACAGA+AGG 0.513322 4_1:+49849621 None:intergenic
GGAAAAGGTTGCAGCAGTGT+AGG 0.514762 4_1:-49849545 Msa0553070:CDS
CGGAATGCTGCTAAGTATGT+TGG 0.515803 4_1:-49849727 Msa0553070:CDS
CATTGAGACGCACGTTTGGG+TGG 0.517268 4_1:-49847726 Msa0553070:three_prime_UTR
GGAGAGGATATGTCTGGTGG+TGG 0.518827 4_1:-49850292 Msa0553070:CDS
CTAATGCTGAATCTTAAATT+GGG 0.519098 4_1:+49847413 None:intergenic
GAAAAGGTTGCAGCAGTGTA+GGG 0.520085 4_1:-49849544 Msa0553070:CDS
CGACTGATTATGAGAAGGTA+TGG 0.520176 4_1:-49847923 Msa0553070:CDS
CAGAACGAAGGAGTAGCAAA+AGG 0.523441 4_1:+49848047 None:intergenic
CTATGGCAGTAAGGACATAA+TGG 0.524949 4_1:+49847383 None:intergenic
TCCTCACACAACCCATTTGG+TGG 0.531504 4_1:+49849573 None:intergenic
AACGCCATCACGAATCTCTC+CGG 0.532591 4_1:-49850238 Msa0553070:intron
GCAGTAGTGTCTCTGCCCGT+TGG 0.535109 4_1:+49848829 None:intergenic
TATGTCTGGTGGTGGAAAAG+GGG 0.535150 4_1:-49850284 Msa0553070:CDS
TGCTGCTAAGTATGTTGGAT+GGG 0.536146 4_1:-49849722 Msa0553070:CDS
TGACGTGGAAATAGAGAAGC+TGG 0.538221 4_1:+49847755 None:intergenic
TTGTACAAACCAGATACTTA+AGG 0.539070 4_1:-49849520 Msa0553070:CDS
ACATCTTTCCCACCGATGAC+CGG 0.539491 4_1:+49850516 None:intergenic
AAACGTGACTTGGATTTGAC+CGG 0.539763 4_1:-49850477 Msa0553070:intron
ATATACCGGTACATAACTGC+TGG 0.541260 4_1:-49849059 Msa0553070:CDS
TCTATCTTGTTCGGCAGGGG+AGG 0.542214 4_1:-49848143 Msa0553070:CDS
GGGGTGTGTTGAATTGAGAA+GGG 0.542741 4_1:+49848080 None:intergenic
CGTCATTGACTATGGCAGTA+AGG 0.544352 4_1:+49847374 None:intergenic
TCTATTAACTTGAATCTAGA+GGG 0.544796 4_1:-49847656 Msa0553070:three_prime_UTR
TGTGGACCTGTGGAGTATAG+TGG 0.548211 4_1:+49850976 None:intergenic
AGATTCTATCTTGTTCGGCA+GGG 0.549277 4_1:-49848147 Msa0553070:CDS
GAGTGCTGACATCAGCGAAT+CGG 0.550570 4_1:-49850661 Msa0553070:CDS
AAGGGTAAAGATTCCAAGGC+CGG 0.550775 4_1:-49847957 Msa0553070:CDS
TATTCTTGAAAGTTATTCCA+GGG 0.551588 4_1:-49848255 Msa0553070:CDS
AAGGATTCAACATAAGCAGC+AGG 0.553157 4_1:+49849453 None:intergenic
CTGCCCGTTGGACAAGAAAG+TGG 0.554515 4_1:+49848841 None:intergenic
ACTTCATAAGTTCCACCACC+TGG 0.555405 4_1:+49849810 None:intergenic
GAAAGTTCTAGCAGTTTCTA+CGG 0.556116 4_1:-49850639 Msa0553070:CDS
GCTATGCTTCCGGTCATCGG+TGG 0.557617 4_1:-49850525 Msa0553070:CDS
AAATGAGCGGCGAGCTGACG+TGG 0.558695 4_1:+49850570 None:intergenic
CCAGATACTTAAGGCTGCCA+TGG 0.558712 4_1:-49849511 Msa0553070:CDS
TCAGTGTTGTTGTTGAGGTG+TGG 0.563762 4_1:+49850958 None:intergenic
AAGCATTATTACCCTTGGCA+AGG 0.564336 4_1:+49849434 None:intergenic
TGGTGGAACTTATGAAGTAA+TGG 0.566731 4_1:-49849805 Msa0553070:CDS
AGCGCTGTTTGAGGAAGCCC+AGG 0.567802 4_1:+49848786 None:intergenic
TGGGGTGTGTTGAATTGAGA+AGG 0.569446 4_1:+49848079 None:intergenic
TATTCGTAGGCAATATGAGT+AGG 0.573733 4_1:-49847566 Msa0553070:three_prime_UTR
CTCCTTCGGCGTCGAAACGT+CGG 0.574174 4_1:+49850616 None:intergenic
AACAGAACTATTAATCGCCA+TGG 0.575102 4_1:+49849494 None:intergenic
GTCTTGGGGATATAATATAC+CGG 0.575804 4_1:-49849073 Msa0553070:CDS
AAAGCCAGACGGTCTTGGGG+TGG 0.577009 4_1:-49848900 Msa0553070:CDS
ATTTGGAGGCATACCTGTGT+AGG 0.577249 4_1:+49847351 None:intergenic
ACACCCTCATATACAGGGAA+TGG 0.577332 4_1:+49847599 None:intergenic
ATCTATTAACTTGAATCTAG+AGG 0.577480 4_1:-49847657 Msa0553070:three_prime_UTR
ATAAAGCTTTCATGTTAACA+TGG 0.577730 4_1:+49847781 None:intergenic
AGAGCCACTTTCTTGTCCAA+CGG 0.577943 4_1:-49848845 Msa0553070:CDS
GTTGTTGAGGTGTGGACCTG+TGG 0.578794 4_1:+49850966 None:intergenic
TGTGTCCTGCGTGGACTGCA+AGG 0.582733 4_1:+49847999 None:intergenic
TGTTGATAGAGGGATTGTGT+TGG 0.583213 4_1:-49849676 Msa0553070:CDS
TAAAGCTTTCATGTTAACAT+GGG 0.584419 4_1:+49847782 None:intergenic
CTGTGTTTGGTGAATTATGG+AGG 0.584849 4_1:-49849941 Msa0553070:CDS
AGATATAGCTAATAGAATTG+AGG 0.588400 4_1:-49848976 Msa0553070:CDS
GAGTTAGCATGTGTTTGGAA+CGG 0.590265 4_1:-49847834 Msa0553070:three_prime_UTR
TTTGGTGGAAGCTTTGGAGA+AGG 0.594961 4_1:+49849588 None:intergenic
TATTAGCTATATCTTGTGTG+TGG 0.596055 4_1:+49848985 None:intergenic
ATTGAGACGCACGTTTGGGT+GGG 0.597357 4_1:-49847725 Msa0553070:three_prime_UTR
GCAGGACACATGATGTAAAG+AGG 0.599723 4_1:-49847986 Msa0553070:CDS
CAGACGGTCTTGGGGTGGAA+AGG 0.600589 4_1:-49848895 Msa0553070:CDS
CTTATGTTGAATCCTTGCCA+AGG 0.600693 4_1:-49849446 Msa0553070:CDS
GAGTGATTCAATAGTCGAGT+TGG 0.601610 4_1:-49849853 Msa0553070:CDS
GGGAAAGCCAGACGGTCTTG+GGG 0.602570 4_1:-49848903 Msa0553070:CDS
GGCCGACGTTTCGACGCCGA+AGG 0.603179 4_1:-49850618 Msa0553070:CDS
CTATGCTTCCGGTCATCGGT+GGG 0.603684 4_1:-49850524 Msa0553070:CDS
TTAGGAGAGGATATGTCTGG+TGG 0.604883 4_1:-49850295 Msa0553070:CDS
GGTGCTCAGATGATAAATCC+AGG 0.607693 4_1:+49849006 None:intergenic
ATGCTGCTAAGTATGTTGGA+TGG 0.608493 4_1:-49849723 Msa0553070:CDS
TGGCAAGGGTAAAGATTCCA+AGG 0.610500 4_1:-49847961 Msa0553070:CDS
AGAAATGGGAAGTGTTTCGT+CGG 0.610958 4_1:-49850718 Msa0553070:exon
GGCTAAGCTCTCCATCACCC+TGG 0.611779 4_1:+49848238 None:intergenic
GGCTTCGACTGATTATGAGA+AGG 0.612301 4_1:-49847928 Msa0553070:CDS
TTATGTTGAATCCTTGCCAA+GGG 0.615016 4_1:-49849445 Msa0553070:intron
ACACATGATGTAAAGAGGAA+TGG 0.620963 4_1:-49847981 Msa0553070:CDS
TGATGTAAAGAGGAATGGCA+AGG 0.621154 4_1:-49847976 Msa0553070:CDS
ACTGACCAGCAGTTATGTAC+CGG 0.623263 4_1:+49849054 None:intergenic
GTCTCAATGTGTTCCTGACG+TGG 0.623749 4_1:+49847740 None:intergenic
CGCAAGAAGAAATTCTGGCG+AGG 0.629857 4_1:-49847880 Msa0553070:CDS
TCTTCTCACCATCAGCAACA+AGG 0.629962 4_1:+49848865 None:intergenic
GTAAAGAGCCTTGTTGCTGA+TGG 0.632308 4_1:-49848873 Msa0553070:CDS
GGGTGTGTTGAATTGAGAAG+GGG 0.632385 4_1:+49848081 None:intergenic
AGCAAAAGGAGAGGCATATG+GGG 0.632893 4_1:+49848061 None:intergenic
GATGTAAAGAGGAATGGCAA+GGG 0.633745 4_1:-49847975 Msa0553070:CDS
TCACCACCACTATACTCCAC+AGG 0.634580 4_1:-49850982 None:intergenic
GATTCGCTGATGTCAGCACT+CGG 0.634852 4_1:+49850663 None:intergenic
GGAGTCCTTGCAGTCCACGC+AGG 0.635954 4_1:-49848004 Msa0553070:CDS
ATAGTCAATGACGCCTACAC+AGG 0.642514 4_1:-49847364 Msa0553070:three_prime_UTR
CGCCGGCAAGTTGAAATGAG+CGG 0.644525 4_1:+49850557 None:intergenic
TGTGTGAGGATGATAGGAAA+AGG 0.644810 4_1:-49849560 Msa0553070:CDS
ACTCCCACTAACAGGAGAGG+AGG 0.651034 4_1:+49848022 None:intergenic
CGAAGGAGTAGCAAAAGGAG+AGG 0.653019 4_1:+49848052 None:intergenic
CTATTAACTTGAATCTAGAG+GGG 0.653777 4_1:-49847655 Msa0553070:three_prime_UTR
TTAGGCAAGAAGAGAAATGG+TGG 0.655462 4_1:-49849614 Msa0553070:CDS
TTTACATCATGTGTCCTGCG+TGG 0.655545 4_1:+49847990 None:intergenic
CATTGCAGTAGCTATAGTAA+CGG 0.659077 4_1:+49850787 None:intergenic
TGTGGCGTAGGGAAATGGAA+TGG 0.660140 4_1:-49849887 Msa0553070:CDS
GAAGATGTTTCAGAGCGATG+TGG 0.663125 4_1:-49850696 Msa0553070:CDS
GGAGAGGAGGAACAGAACGA+AGG 0.664755 4_1:+49848035 None:intergenic
GGACCTGTGGAGTATAGTGG+TGG 0.667940 4_1:+49850979 None:intergenic
GGGAGATCGCCAAACCAAAG+AGG 0.669160 4_1:-49847705 Msa0553070:three_prime_UTR
AAATTACACCCTCATATACA+GGG 0.669557 4_1:+49847594 None:intergenic
TATTAACTTGAATCTAGAGG+GGG 0.672810 4_1:-49847654 Msa0553070:three_prime_UTR
GAGAAGGTATGGTCATACGC+AGG 0.673120 4_1:-49847912 Msa0553070:CDS
GAATGGTAAAGCTTGTCTTG+GGG 0.676070 4_1:-49849087 Msa0553070:CDS
CTAACCGGAGAGATTCGTGA+TGG 0.676096 4_1:+49850234 None:intergenic
AGGACTCCCACTAACAGGAG+AGG 0.681765 4_1:+49848019 None:intergenic
AGTAAGGACATAATGGCACA+TGG 0.682072 4_1:+49847390 None:intergenic
TCCACCAAATGGGTTGTGTG+AGG 0.688832 4_1:-49849574 Msa0553070:CDS
TCTGTGCAACAATTTCCAGG+TGG 0.694742 4_1:-49849825 Msa0553070:CDS
TTGATGTACAAATCAGAGCG+AGG 0.697670 4_1:+49849774 None:intergenic
CTTATGAAGTAATGGCAACG+CGG 0.715804 4_1:-49849797 Msa0553070:CDS
AGGCTGCTATACATGTATGG+AGG 0.750304 4_1:-49848956 Msa0553070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAGAAAATGATATAAAT+GGG + chr4_1:49847401-49847420 None:intergenic 15.0%
!! ATAAGAGAAAATGATATAAA+TGG + chr4_1:49847402-49847421 None:intergenic 15.0%
!!! ATTTTATACAGATCTTAATT+TGG + chr4_1:49847466-49847485 None:intergenic 15.0%
!!! AATTTTTTTCCTTCTAAAAT+TGG - chr4_1:49849072-49849091 Msa0553070:CDS 15.0%
!! CTATAAGAAACTTAAAAAAT+CGG - chr4_1:49849295-49849314 Msa0553070:intron 15.0%
!! TATAAGAAACTTAAAAAATC+GGG - chr4_1:49849296-49849315 Msa0553070:intron 15.0%
!!! AAATTTTGAGACTTAAAATT+TGG + chr4_1:49850889-49850908 None:intergenic 15.0%
!!! ATTTCTTTTGAATCAAAATA+TGG + chr4_1:49850913-49850932 None:intergenic 15.0%
!!! TGTAATTTTTGAGTATTATG+TGG - chr4_1:49848955-49848974 Msa0553070:CDS 20.0%
!! AAAACTTTAATAAGCTGAAA+TGG - chr4_1:49849012-49849031 Msa0553070:CDS 20.0%
!! ATAAGAAACTTAAAAAATCG+GGG - chr4_1:49849297-49849316 Msa0553070:intron 20.0%
!!! TTTTTTTTTTTTTTTTGCCG+AGG - chr4_1:49849732-49849751 Msa0553070:CDS 20.0%
!! ACAATGATCAATCATTATTA+CGG + chr4_1:49849812-49849831 None:intergenic 20.0%
!! AATCAAAGAATAAACTCATT+TGG - chr4_1:49849909-49849928 Msa0553070:CDS 20.0%
!!! TGTAATTTTTGTATATTCGT+AGG - chr4_1:49850641-49850660 Msa0553070:CDS 20.0%
!!! ATTTTTAATTGATGATCCAA+GGG + chr4_1:49850699-49850718 None:intergenic 20.0%
!!! TCCTTTCAAGTATAAATTTT+TGG - chr4_1:49850722-49850741 Msa0553070:exon 20.0%
!! TCCAAAAATTTATACTTGAA+AGG + chr4_1:49850726-49850745 None:intergenic 20.0%
!!! TTTCAAGTATAAATTTTTGG+AGG - chr4_1:49850725-49850744 Msa0553070:exon 20.0%
!! GATTCAAAAGAAATACATTA+TGG - chr4_1:49850919-49850938 Msa0553070:five_prime_UTR 20.0%
! ATGATTATATCGTGTTACAA+TGG - chr4_1:49848880-49848899 Msa0553070:CDS 25.0%
!!! CTTATTAAAGTTTTGAACCA+TGG + chr4_1:49849006-49849025 None:intergenic 25.0%
! TTCAAAAATGGTTGAGTATT+TGG - chr4_1:49849037-49849056 Msa0553070:CDS 25.0%
!! AGTTTTCATCCAATTTTAGA+AGG + chr4_1:49849084-49849103 None:intergenic 25.0%
!! GAAAACTTAAAATGCCTTTT+TGG - chr4_1:49849097-49849116 Msa0553070:intron 25.0%
! AGATATAGCTAATAGAATTG+AGG - chr4_1:49849244-49849263 Msa0553070:intron 25.0%
! TACCTTATTATACTGTATCT+TGG + chr4_1:49849468-49849487 None:intergenic 25.0%
! TTTAGCAAAAGATATAATCC+TGG - chr4_1:49849654-49849673 Msa0553070:CDS 25.0%
! AAAATTCTCTCACAAAATAC+AGG + chr4_1:49849715-49849734 None:intergenic 25.0%
! GAAAATACTAGTCATATGTT+AGG + chr4_1:49849776-49849795 None:intergenic 25.0%
! TATTCTTGAAAGTTATTCCA+GGG - chr4_1:49849965-49849984 Msa0553070:intron 25.0%
! TTATAGTATCGTCTACATAA+AGG + chr4_1:49850037-49850056 None:intergenic 25.0%
! TAAAGCTTTCATGTTAACAT+GGG + chr4_1:49850441-49850460 None:intergenic 25.0%
! ATAAAGCTTTCATGTTAACA+TGG + chr4_1:49850442-49850461 None:intergenic 25.0%
!! ATCTATTAACTTGAATCTAG+AGG - chr4_1:49850563-49850582 Msa0553070:CDS 25.0%
!! TCTATTAACTTGAATCTAGA+GGG - chr4_1:49850564-49850583 Msa0553070:CDS 25.0%
!!! CATTTTTAATTGATGATCCA+AGG + chr4_1:49850700-49850719 None:intergenic 25.0%
! TTTATAGAAAAACACCATGT+GGG + chr4_1:49850754-49850773 None:intergenic 25.0%
! ATTTATAGAAAAACACCATG+TGG + chr4_1:49850755-49850774 None:intergenic 25.0%
! CTAATGCTGAATCTTAAATT+GGG + chr4_1:49850810-49850829 None:intergenic 25.0%
!!! TTTTGAGACTTAAAATTTGG+AGG + chr4_1:49850886-49850905 None:intergenic 25.0%
ACAAAGAAAAAGAATGTGAG+TGG - chr4_1:49847323-49847342 Msa0553070:three_prime_UTR 30.0%
! TTGCTGTTGTTGTAAAGAAA+TGG - chr4_1:49847487-49847506 Msa0553070:three_prime_UTR 30.0%
TGCTGTTGTTGTAAAGAAAT+GGG - chr4_1:49847488-49847507 Msa0553070:three_prime_UTR 30.0%
AACATAAAGCCACAATTGTA+CGG + chr4_1:49847800-49847819 None:intergenic 30.0%
TCGCAAAAAAACTAACTAAC+CGG + chr4_1:49848004-49848023 None:intergenic 30.0%
TTCTATGTAATCAGATGTGT+CGG - chr4_1:49848102-49848121 Msa0553070:CDS 30.0%
ACATCTTCAATCAACATTGT+CGG - chr4_1:49848152-49848171 Msa0553070:CDS 30.0%
!! AGTTTTGGTATGTTGATAGA+GGG - chr4_1:49848534-49848553 Msa0553070:intron 30.0%
TCTAAGGATTGTGATGATTA+TGG - chr4_1:49848572-49848591 Msa0553070:intron 30.0%
TTGTACAAACCAGATACTTA+AGG - chr4_1:49848700-49848719 Msa0553070:intron 30.0%
TAATGCTTTGCTTTGCATAT+AGG - chr4_1:49848801-49848820 Msa0553070:CDS 30.0%
TAGGAAATAAACTGTGTTCA+TGG - chr4_1:49848820-49848839 Msa0553070:CDS 30.0%
! ACTGTGTTCATGGTTAATTT+TGG - chr4_1:49848830-49848849 Msa0553070:CDS 30.0%
! CTGTGTTCATGGTTAATTTT+GGG - chr4_1:49848831-49848850 Msa0553070:CDS 30.0%
GAATTGATGTCTGTCTAATA+TGG + chr4_1:49848907-49848926 None:intergenic 30.0%
GCTGAAATGGAATTCAAAAA+TGG - chr4_1:49849025-49849044 Msa0553070:CDS 30.0%
TATTAGCTATATCTTGTGTG+TGG + chr4_1:49849238-49849257 None:intergenic 30.0%
! ATTTTCTCGCTCTTAAAGTT+TGG - chr4_1:49849489-49849508 Msa0553070:CDS 30.0%
GAAGTGATATGCAGTATATT+AGG - chr4_1:49849579-49849598 Msa0553070:CDS 30.0%
AAAAGATATAATCCTGGCAA+CGG - chr4_1:49849660-49849679 Msa0553070:CDS 30.0%
TCTGTATGATAAGTTTGTGT+AGG - chr4_1:49849835-49849854 Msa0553070:CDS 30.0%
CTATTCTTGAAAGTTATTCC+AGG - chr4_1:49849964-49849983 Msa0553070:intron 30.0%
! CTATTAACTTGAATCTAGAG+GGG - chr4_1:49850565-49850584 Msa0553070:CDS 30.0%
! TATTAACTTGAATCTAGAGG+GGG - chr4_1:49850566-49850585 Msa0553070:CDS 30.0%
AAATTACACCCTCATATACA+GGG + chr4_1:49850629-49850648 None:intergenic 30.0%
AAAATTACACCCTCATATAC+AGG + chr4_1:49850630-49850649 None:intergenic 30.0%
ATGAAGAAAAATTATGCCCT+TGG - chr4_1:49850680-49850699 Msa0553070:CDS 30.0%
! CAAATTGCTATGTAGAGTTT+TGG - chr4_1:49850776-49850795 Msa0553070:five_prime_UTR 30.0%
GCTAATGCTGAATCTTAAAT+TGG + chr4_1:49850811-49850830 None:intergenic 30.0%
CATTGCAGTAGCTATAGTAA+CGG + chr4_1:49847436-49847455 None:intergenic 35.0%
! GAAAGTTCTAGCAGTTTCTA+CGG - chr4_1:49847581-49847600 Msa0553070:three_prime_UTR 35.0%
GAAACTGTGAAGTGTGTTAA+CGG - chr4_1:49847846-49847865 Msa0553070:exon 35.0%
TGCAGAAGTTGAAATGATGA+AGG - chr4_1:49847882-49847901 Msa0553070:CDS 35.0%
GTGTTAGTAACTATGAAGCA+CGG - chr4_1:49848029-49848048 Msa0553070:CDS 35.0%
TGGTGGAACTTATGAAGTAA+TGG - chr4_1:49848415-49848434 Msa0553070:intron 35.0%
!! GGTTTTGTGATACACAGTTT+TGG - chr4_1:49848519-49848538 Msa0553070:intron 35.0%
!! CAGTTTTGGTATGTTGATAG+AGG - chr4_1:49848533-49848552 Msa0553070:intron 35.0%
ATTATGGTAGACCTTCTGTT+AGG - chr4_1:49848588-49848607 Msa0553070:intron 35.0%
AACAGAACTATTAATCGCCA+TGG + chr4_1:49848729-49848748 None:intergenic 35.0%
! TAGTTCTGTTCTTGCTGAAA+TGG - chr4_1:49848739-49848758 Msa0553070:intron 35.0%
TTATGTTGAATCCTTGCCAA+GGG - chr4_1:49848775-49848794 Msa0553070:CDS 35.0%
! AAGCAAAGCATTATTACCCT+TGG + chr4_1:49848794-49848813 None:intergenic 35.0%
!! GTTCATGGTTAATTTTGGGT+TGG - chr4_1:49848835-49848854 Msa0553070:CDS 35.0%
!! GCTGAAATCAGTTTTATCCA+TGG - chr4_1:49848986-49849005 Msa0553070:CDS 35.0%
! CTGCATTGGTAAAACCAAAA+AGG + chr4_1:49849114-49849133 None:intergenic 35.0%
!!! TTGGTTTTACCAATGCAGAA+TGG - chr4_1:49849116-49849135 Msa0553070:intron 35.0%
AGAATGGTAAAGCTTGTCTT+GGG - chr4_1:49849132-49849151 Msa0553070:intron 35.0%
GTCTTGGGGATATAATATAC+CGG - chr4_1:49849147-49849166 Msa0553070:intron 35.0%
GGCCAAGATACAGTATAATA+AGG - chr4_1:49849463-49849482 Msa0553070:CDS 35.0%
TATATTAGGTGCATCTGATC+TGG - chr4_1:49849593-49849612 Msa0553070:CDS 35.0%
TCTAGTCTGTATAGTTACAG+AGG - chr4_1:49849860-49849879 Msa0553070:CDS 35.0%
TCTGTATAGTTACAGAGGTT+AGG - chr4_1:49849865-49849884 Msa0553070:CDS 35.0%
! GAGCTTAGCCTTTAACATAA+TGG - chr4_1:49849995-49850014 Msa0553070:intron 35.0%
GATTCTGGCCATTATGTTAA+AGG + chr4_1:49850006-49850025 None:intergenic 35.0%
!! ATAAAGGACATCATCGATTC+TGG + chr4_1:49850021-49850040 None:intergenic 35.0%
ACACATGATGTAAAGAGGAA+TGG - chr4_1:49850239-49850258 Msa0553070:CDS 35.0%
!! TTCTAGAGTTAGCATGTGTT+TGG - chr4_1:49850381-49850400 Msa0553070:intron 35.0%
TATTCGTAGGCAATATGAGT+AGG - chr4_1:49850654-49850673 Msa0553070:CDS 35.0%
!! AGAAATGGGAAGTGTTTCGT+CGG - chr4_1:49847502-49847521 Msa0553070:three_prime_UTR 40.0%
!! TGGGAAAGATGTTGCTGTTT+GGG - chr4_1:49847715-49847734 Msa0553070:three_prime_UTR 40.0%
! AAACGTGACTTGGATTTGAC+CGG - chr4_1:49847743-49847762 Msa0553070:three_prime_UTR 40.0%
TATTCTCCTCCGTACAATTG+TGG - chr4_1:49847788-49847807 Msa0553070:three_prime_UTR 40.0%
ATAAAGCCACAATTGTACGG+AGG + chr4_1:49847797-49847816 None:intergenic 40.0%
!!! CGTTTTGCGAAGTTGCTTTT+AGG - chr4_1:49847907-49847926 Msa0553070:CDS 40.0%
!! CTTTTAGGAGAGGATATGTC+TGG - chr4_1:49847922-49847941 Msa0553070:CDS 40.0%
!! ATATGTCTGGTGGTGGAAAA+GGG - chr4_1:49847935-49847954 Msa0553070:CDS 40.0%
! CGACTGTGTTTGGTGAATTA+TGG - chr4_1:49848276-49848295 Msa0553070:intron 40.0%
! CTGTGTTTGGTGAATTATGG+AGG - chr4_1:49848279-49848298 Msa0553070:intron 40.0%
! GTTTGGTGAATTATGGAGGT+TGG - chr4_1:49848283-49848302 Msa0553070:intron 40.0%
CACCACAGAAAAAAGCAATG+TGG - chr4_1:49848315-49848334 Msa0553070:intron 40.0%
AGAAAAAAGCAATGTGGCGT+AGG - chr4_1:49848321-49848340 Msa0553070:intron 40.0%
GAAAAAAGCAATGTGGCGTA+GGG - chr4_1:49848322-49848341 Msa0553070:intron 40.0%
GAGTGATTCAATAGTCGAGT+TGG - chr4_1:49848367-49848386 Msa0553070:intron 40.0%
CTTATGAAGTAATGGCAACG+CGG - chr4_1:49848423-49848442 Msa0553070:intron 40.0%
TTGATGTACAAATCAGAGCG+AGG + chr4_1:49848449-49848468 None:intergenic 40.0%
ATGCTGCTAAGTATGTTGGA+TGG - chr4_1:49848497-49848516 Msa0553070:intron 40.0%
TGCTGCTAAGTATGTTGGAT+GGG - chr4_1:49848498-49848517 Msa0553070:intron 40.0%
! TGTTGATAGAGGGATTGTGT+TGG - chr4_1:49848544-49848563 Msa0553070:intron 40.0%
! GTTGATAGAGGGATTGTGTT+GGG - chr4_1:49848545-49848564 Msa0553070:intron 40.0%
GATTGTGTTGGGTGATTCTA+AGG - chr4_1:49848556-49848575 Msa0553070:intron 40.0%
TTCTCTTCTTGCCTAACAGA+AGG + chr4_1:49848602-49848621 None:intergenic 40.0%
CTGTTAGGCAAGAAGAGAAA+TGG - chr4_1:49848603-49848622 Msa0553070:intron 40.0%
TTAGGCAAGAAGAGAAATGG+TGG - chr4_1:49848606-49848625 Msa0553070:intron 40.0%
TGTGTGAGGATGATAGGAAA+AGG - chr4_1:49848660-49848679 Msa0553070:intron 40.0%
AAGGATTCAACATAAGCAGC+AGG + chr4_1:49848770-49848789 None:intergenic 40.0%
CTTATGTTGAATCCTTGCCA+AGG - chr4_1:49848774-49848793 Msa0553070:CDS 40.0%
AAGCATTATTACCCTTGGCA+AGG + chr4_1:49848789-49848808 None:intergenic 40.0%
CAAGCTTTACCATTCTGCAT+TGG + chr4_1:49849128-49849147 None:intergenic 40.0%
CAGAATGGTAAAGCTTGTCT+TGG - chr4_1:49849131-49849150 Msa0553070:intron 40.0%
GAATGGTAAAGCTTGTCTTG+GGG - chr4_1:49849133-49849152 Msa0553070:intron 40.0%
ATATACCGGTACATAACTGC+TGG - chr4_1:49849161-49849180 Msa0553070:intron 40.0%
TTGAGGCTGCTATACATGTA+TGG - chr4_1:49849261-49849280 Msa0553070:intron 40.0%
CTCACAAAATACAGGCGTAA+GGG + chr4_1:49849707-49849726 None:intergenic 40.0%
TCTCACAAAATACAGGCGTA+AGG + chr4_1:49849708-49849727 None:intergenic 40.0%
AATCATACTGCACTTGACCT+CGG + chr4_1:49849752-49849771 None:intergenic 40.0%
TAGTTACAGAGGTTAGGCAT+CGG - chr4_1:49849871-49849890 Msa0553070:CDS 40.0%
! TGGAACATTGTTTTCCTTGC+AGG - chr4_1:49849929-49849948 Msa0553070:CDS 40.0%
! TTGTTTTCCTTGCAGGATGT+AGG - chr4_1:49849936-49849955 Msa0553070:CDS 40.0%
! TGTTTTCCTTGCAGGATGTA+GGG - chr4_1:49849937-49849956 Msa0553070:CDS 40.0%
TGAAAGTTATTCCAGGGTGA+TGG - chr4_1:49849971-49849990 Msa0553070:intron 40.0%
GCTGCAGATTCTATCTTGTT+CGG - chr4_1:49850068-49850087 Msa0553070:intron 40.0%
AGATTCTATCTTGTTCGGCA+GGG - chr4_1:49850073-49850092 Msa0553070:intron 40.0%
!! GGAGTCATTCGCTTTTGAAT+AGG + chr4_1:49850116-49850135 None:intergenic 40.0%
! TAGCAAAAGGAGAGGCATAT+GGG + chr4_1:49850163-49850182 None:intergenic 40.0%
TGATGTAAAGAGGAATGGCA+AGG - chr4_1:49850244-49850263 Msa0553070:CDS 40.0%
GATGTAAAGAGGAATGGCAA+GGG - chr4_1:49850245-49850264 Msa0553070:CDS 40.0%
CGACTGATTATGAGAAGGTA+TGG - chr4_1:49850297-49850316 Msa0553070:CDS 40.0%
! TCTAGAACTCAGTCTCTTTC+TGG + chr4_1:49850368-49850387 None:intergenic 40.0%
GAGTTAGCATGTGTTTGGAA+CGG - chr4_1:49850386-49850405 Msa0553070:intron 40.0%
TACTAAGTGCCTCTTTGGTT+TGG + chr4_1:49850527-49850546 None:intergenic 40.0%
GATGATACTAAGTGCCTCTT+TGG + chr4_1:49850532-49850551 None:intergenic 40.0%
TGTACCATTCCCTGTATATG+AGG - chr4_1:49850617-49850636 Msa0553070:CDS 40.0%
GTACCATTCCCTGTATATGA+GGG - chr4_1:49850618-49850637 Msa0553070:CDS 40.0%
ATAGAAAAACACCATGTGGG+TGG + chr4_1:49850751-49850770 None:intergenic 40.0%
AGTAAGGACATAATGGCACA+TGG + chr4_1:49850833-49850852 None:intergenic 40.0%
CTATGGCAGTAAGGACATAA+TGG + chr4_1:49850840-49850859 None:intergenic 40.0%
! TCAGTGTTGTTGTTGAGGTG+TGG + chr4_1:49847265-49847284 None:intergenic 45.0%
! CTCTGTCAGTGTTGTTGTTG+AGG + chr4_1:49847270-49847289 None:intergenic 45.0%
GAAGATGTTTCAGAGCGATG+TGG - chr4_1:49847524-49847543 Msa0553070:three_prime_UTR 45.0%
! GTGGGAAAGATGTTGCTGTT+TGG - chr4_1:49847714-49847733 Msa0553070:three_prime_UTR 45.0%
TTGGGATCACAAACGTGACT+TGG - chr4_1:49847733-49847752 Msa0553070:three_prime_UTR 45.0%
!!! TGCGAAGTTGCTTTTAGGAG+AGG - chr4_1:49847912-49847931 Msa0553070:CDS 45.0%
TTAGGAGAGGATATGTCTGG+TGG - chr4_1:49847925-49847944 Msa0553070:CDS 45.0%
!! GATATGTCTGGTGGTGGAAA+AGG - chr4_1:49847934-49847953 Msa0553070:CDS 45.0%
!! TATGTCTGGTGGTGGAAAAG+GGG - chr4_1:49847936-49847955 Msa0553070:CDS 45.0%
!! CAACATTGTCGGTGCTTTTG+AGG - chr4_1:49848163-49848182 Msa0553070:CDS 45.0%
GTAATTGCAGCGACTGTGTT+TGG - chr4_1:49848266-49848285 Msa0553070:CDS 45.0%
!!! GCTTTTTTCTGTGGTGCTAG+TGG + chr4_1:49848311-49848330 None:intergenic 45.0%
!!! CGCCACATTGCTTTTTTCTG+TGG + chr4_1:49848320-49848339 None:intergenic 45.0%
CCTGGAAATTGTTGCACAGA+AGG + chr4_1:49848395-49848414 None:intergenic 45.0%
CCTTCTGTGCAACAATTTCC+AGG - chr4_1:49848392-49848411 Msa0553070:intron 45.0%
TCTGTGCAACAATTTCCAGG+TGG - chr4_1:49848395-49848414 Msa0553070:intron 45.0%
ACTTCATAAGTTCCACCACC+TGG + chr4_1:49848413-49848432 None:intergenic 45.0%
CCTGCATTGAAGAAGCTTGA+CGG - chr4_1:49848473-49848492 Msa0553070:intron 45.0%
CGGAATGCTGCTAAGTATGT+TGG - chr4_1:49848493-49848512 Msa0553070:intron 45.0%
!! TTTGGTGGAAGCTTTGGAGA+AGG + chr4_1:49848635-49848654 None:intergenic 45.0%
TCTCCAAAGCTTCCACCAAA+TGG - chr4_1:49848635-49848654 Msa0553070:intron 45.0%
CTCCAAAGCTTCCACCAAAT+GGG - chr4_1:49848636-49848655 Msa0553070:intron 45.0%
! AACCCATTTGGTGGAAGCTT+TGG + chr4_1:49848641-49848660 None:intergenic 45.0%
TCATCCTCACACAACCCATT+TGG + chr4_1:49848653-49848672 None:intergenic 45.0%
! ATGGGTTGTGTGAGGATGAT+AGG - chr4_1:49848654-49848673 Msa0553070:intron 45.0%
GAAAAGGTTGCAGCAGTGTA+GGG - chr4_1:49848676-49848695 Msa0553070:intron 45.0%
ACTGACCAGCAGTTATGTAC+CGG + chr4_1:49849169-49849188 None:intergenic 45.0%
TGAATGTCTTCTTGACTGCC+TGG - chr4_1:49849196-49849215 Msa0553070:intron 45.0%
GGTGCTCAGATGATAAATCC+AGG + chr4_1:49849217-49849236 None:intergenic 45.0%
AGGCTGCTATACATGTATGG+AGG - chr4_1:49849264-49849283 Msa0553070:intron 45.0%
AAAAATCGGGGAAAGCCAGA+CGG - chr4_1:49849309-49849328 Msa0553070:intron 45.0%
!! GTAAAGAGCCTTGTTGCTGA+TGG - chr4_1:49849347-49849366 Msa0553070:intron 45.0%
TCTTCTCACCATCAGCAACA+AGG + chr4_1:49849358-49849377 None:intergenic 45.0%
! AGAGCCACTTTCTTGTCCAA+CGG - chr4_1:49849375-49849394 Msa0553070:intron 45.0%
TTTGAGGAAGCCCAGGAAAT+CGG + chr4_1:49849430-49849449 None:intergenic 45.0%
TCCTCAAACAGCGCTAGATA+TGG - chr4_1:49849442-49849461 Msa0553070:intron 45.0%
TTGTTCTATGTACCGTTGCC+AGG + chr4_1:49849675-49849694 None:intergenic 45.0%
AGTTACAGAGGTTAGGCATC+GGG - chr4_1:49849872-49849891 Msa0553070:CDS 45.0%
CAGATTCTATCTTGTTCGGC+AGG - chr4_1:49850072-49850091 Msa0553070:intron 45.0%
GATTCTATCTTGTTCGGCAG+GGG - chr4_1:49850074-49850093 Msa0553070:intron 45.0%
TGTTGAATTGAGAAGGGGCT+GGG + chr4_1:49850137-49850156 None:intergenic 45.0%
GGGTGTGTTGAATTGAGAAG+GGG + chr4_1:49850142-49850161 None:intergenic 45.0%
GGGGTGTGTTGAATTGAGAA+GGG + chr4_1:49850143-49850162 None:intergenic 45.0%
TGGGGTGTGTTGAATTGAGA+AGG + chr4_1:49850144-49850163 None:intergenic 45.0%
! AGCAAAAGGAGAGGCATATG+GGG + chr4_1:49850162-49850181 None:intergenic 45.0%
! GTAGCAAAAGGAGAGGCATA+TGG + chr4_1:49850164-49850183 None:intergenic 45.0%
CAGAACGAAGGAGTAGCAAA+AGG + chr4_1:49850176-49850195 None:intergenic 45.0%
TTTACATCATGTGTCCTGCG+TGG + chr4_1:49850233-49850252 None:intergenic 45.0%
GCAGGACACATGATGTAAAG+AGG - chr4_1:49850234-49850253 Msa0553070:intron 45.0%
TGGCAAGGGTAAAGATTCCA+AGG - chr4_1:49850259-49850278 Msa0553070:CDS 45.0%
AAGGGTAAAGATTCCAAGGC+CGG - chr4_1:49850263-49850282 Msa0553070:CDS 45.0%
ATCAGTCGAAGCCAACTTTC+CGG + chr4_1:49850285-49850304 None:intergenic 45.0%
GGCTTCGACTGATTATGAGA+AGG - chr4_1:49850292-49850311 Msa0553070:CDS 45.0%
CAGAATTTCTTCTTGCGCTG+AGG + chr4_1:49850337-49850356 None:intergenic 45.0%
CTCAGCGCAAGAAGAAATTC+TGG - chr4_1:49850335-49850354 Msa0553070:CDS 45.0%
TGACGTGGAAATAGAGAAGC+TGG + chr4_1:49850468-49850487 None:intergenic 45.0%
AGCTTCTCTATTTCCACGTC+AGG - chr4_1:49850467-49850486 Msa0553070:intron 45.0%
AACACATTGAGACGCACGTT+TGG - chr4_1:49850490-49850509 Msa0553070:CDS 45.0%
ACACATTGAGACGCACGTTT+GGG - chr4_1:49850491-49850510 Msa0553070:CDS 45.0%
ACACCCTCATATACAGGGAA+TGG + chr4_1:49850624-49850643 None:intergenic 45.0%
! CGTCATTGACTATGGCAGTA+AGG + chr4_1:49850849-49850868 None:intergenic 45.0%
! TGTGTAGGCGTCATTGACTA+TGG + chr4_1:49850857-49850876 None:intergenic 45.0%
ATAGTCAATGACGCCTACAC+AGG - chr4_1:49850856-49850875 Msa0553070:five_prime_UTR 45.0%
! ATTTGGAGGCATACCTGTGT+AGG + chr4_1:49850872-49850891 None:intergenic 45.0%
TGTGGACCTGTGGAGTATAG+TGG + chr4_1:49847247-49847266 None:intergenic 50.0%
GATTCGCTGATGTCAGCACT+CGG + chr4_1:49847560-49847579 None:intergenic 50.0%
!! GAGTGCTGACATCAGCGAAT+CGG - chr4_1:49847559-49847578 Msa0553070:three_prime_UTR 50.0%
TCATTTCAACTTGCCGGCGA+CGG - chr4_1:49847667-49847686 Msa0553070:three_prime_UTR 50.0%
ACATCTTTCCCACCGATGAC+CGG + chr4_1:49847707-49847726 None:intergenic 50.0%
TGAATGAGCGAGCACTCTAC+CGG + chr4_1:49847765-49847784 None:intergenic 50.0%
AACGCCATCACGAATCTCTC+CGG - chr4_1:49847982-49848001 Msa0553070:CDS 50.0%
CTAACCGGAGAGATTCGTGA+TGG + chr4_1:49847989-49848008 None:intergenic 50.0%
AGCAATGTGGCGTAGGGAAA+TGG - chr4_1:49848328-49848347 Msa0553070:intron 50.0%
TGTGGCGTAGGGAAATGGAA+TGG - chr4_1:49848333-49848352 Msa0553070:intron 50.0%
GTGCAACAATTTCCAGGTGG+TGG - chr4_1:49848398-49848417 Msa0553070:intron 50.0%
CCGTCAAGCTTCTTCAATGC+AGG + chr4_1:49848476-49848495 None:intergenic 50.0%
!! TCCACCAAATGGGTTGTGTG+AGG - chr4_1:49848646-49848665 Msa0553070:intron 50.0%
TCCTCACACAACCCATTTGG+TGG + chr4_1:49848650-49848669 None:intergenic 50.0%
GGAAAAGGTTGCAGCAGTGT+AGG - chr4_1:49848675-49848694 Msa0553070:intron 50.0%
CCATGGCAGCCTTAAGTATC+TGG + chr4_1:49848712-49848731 None:intergenic 50.0%
CCAGATACTTAAGGCTGCCA+TGG - chr4_1:49848709-49848728 Msa0553070:intron 50.0%
! GAGCCACTTTCTTGTCCAAC+GGG - chr4_1:49849376-49849395 Msa0553070:intron 50.0%
!! AGCTTGAAACGCCGATTTCC+TGG - chr4_1:49849416-49849435 Msa0553070:intron 50.0%
!! GCTTGAAACGCCGATTTCCT+GGG - chr4_1:49849417-49849436 Msa0553070:intron 50.0%
GCCATATCTAGCGCTGTTTG+AGG + chr4_1:49849446-49849465 None:intergenic 50.0%
GTGTTGAATTGAGAAGGGGC+TGG + chr4_1:49850138-49850157 None:intergenic 50.0%
CGAAGGAGTAGCAAAAGGAG+AGG + chr4_1:49850171-49850190 None:intergenic 50.0%
TGTTCCTCCTCTCCTGTTAG+TGG - chr4_1:49850194-49850213 Msa0553070:intron 50.0%
GTTCCTCCTCTCCTGTTAGT+GGG - chr4_1:49850195-49850214 Msa0553070:intron 50.0%
AGATTCCAAGGCCGGAAAGT+TGG - chr4_1:49850271-49850290 Msa0553070:CDS 50.0%
! GAGAAGGTATGGTCATACGC+AGG - chr4_1:49850308-49850327 Msa0553070:CDS 50.0%
CGCAAGAAGAAATTCTGGCG+AGG - chr4_1:49850340-49850359 Msa0553070:intron 50.0%
ATCGCCGCAGGTTTGCAAAA+CGG + chr4_1:49850416-49850435 None:intergenic 50.0%
GTCTCAATGTGTTCCTGACG+TGG + chr4_1:49850483-49850502 None:intergenic 50.0%
ATTGAGACGCACGTTTGGGT+GGG - chr4_1:49850495-49850514 Msa0553070:CDS 50.0%
TAGAGGGGGTCGTTCATCTT+TGG - chr4_1:49850580-49850599 Msa0553070:CDS 50.0%
!! ATTTTTGGAGGCCACCCACA+TGG - chr4_1:49850737-49850756 Msa0553070:five_prime_UTR 50.0%
GTTGTTGAGGTGTGGACCTG+TGG + chr4_1:49847257-49847276 None:intergenic 55.0%
AGCTGAGCTGGAAGCTCCTT+CGG + chr4_1:49847621-49847640 None:intergenic 55.0%
! TGGCGAGAGATTAGCTGAGC+TGG + chr4_1:49847633-49847652 None:intergenic 55.0%
CGCCGCTCATTTCAACTTGC+CGG - chr4_1:49847661-49847680 Msa0553070:three_prime_UTR 55.0%
! CGCCGGCAAGTTGAAATGAG+CGG + chr4_1:49847666-49847685 None:intergenic 55.0%
CAGGCTATGCTTCCGGTCAT+CGG - chr4_1:49847692-49847711 Msa0553070:three_prime_UTR 55.0%
CTATGCTTCCGGTCATCGGT+GGG - chr4_1:49847696-49847715 Msa0553070:three_prime_UTR 55.0%
GGAGAGGATATGTCTGGTGG+TGG - chr4_1:49847928-49847947 Msa0553070:CDS 55.0%
CTGCCCGTTGGACAAGAAAG+TGG + chr4_1:49849382-49849401 None:intergenic 55.0%
!! AGAGGTTAGGCATCGGGAGA+AGG - chr4_1:49849878-49849897 Msa0553070:CDS 55.0%
!! GAGGTTAGGCATCGGGAGAA+GGG - chr4_1:49849879-49849898 Msa0553070:CDS 55.0%
AGACTGCCCTACATCCTGCA+AGG + chr4_1:49849946-49849965 None:intergenic 55.0%
TCTATCTTGTTCGGCAGGGG+AGG - chr4_1:49850077-49850096 Msa0553070:intron 55.0%
! TTGTTCGGCAGGGGAGGTTT+TGG - chr4_1:49850083-49850102 Msa0553070:intron 55.0%
GGAGAGGAGGAACAGAACGA+AGG + chr4_1:49850188-49850207 None:intergenic 55.0%
ACTCCCACTAACAGGAGAGG+AGG + chr4_1:49850201-49850220 None:intergenic 55.0%
AGGACTCCCACTAACAGGAG+AGG + chr4_1:49850204-49850223 None:intergenic 55.0%
CTGCAAGGACTCCCACTAAC+AGG + chr4_1:49850209-49850228 None:intergenic 55.0%
! CGTCCCGTTTTGCAAACCTG+CGG - chr4_1:49850409-49850428 Msa0553070:intron 55.0%
TCGCCGCAGGTTTGCAAAAC+GGG + chr4_1:49850415-49850434 None:intergenic 55.0%
TTAACATGGGTCATCGCCGC+AGG + chr4_1:49850428-49850447 None:intergenic 55.0%
CATTGAGACGCACGTTTGGG+TGG - chr4_1:49850494-49850513 Msa0553070:CDS 55.0%
GGGAGATCGCCAAACCAAAG+AGG - chr4_1:49850515-49850534 Msa0553070:CDS 55.0%
! CTCCTTCGGCGTCGAAACGT+CGG + chr4_1:49847607-49847626 None:intergenic 60.0%
AAATGAGCGGCGAGCTGACG+TGG + chr4_1:49847653-49847672 None:intergenic 60.0%
GCTATGCTTCCGGTCATCGG+TGG - chr4_1:49847695-49847714 Msa0553070:three_prime_UTR 60.0%
GGGGAAAGCCAGACGGTCTT+GGG - chr4_1:49849316-49849335 Msa0553070:intron 60.0%
GGGAAAGCCAGACGGTCTTG+GGG - chr4_1:49849317-49849336 Msa0553070:intron 60.0%
AAAGCCAGACGGTCTTGGGG+TGG - chr4_1:49849320-49849339 Msa0553070:intron 60.0%
CTTTCCACCCCAAGACCGTC+TGG + chr4_1:49849327-49849346 None:intergenic 60.0%
CAGACGGTCTTGGGGTGGAA+AGG - chr4_1:49849325-49849344 Msa0553070:intron 60.0%
GCAGTAGTGTCTCTGCCCGT+TGG + chr4_1:49849394-49849413 None:intergenic 60.0%
AGCGCTGTTTGAGGAAGCCC+AGG + chr4_1:49849437-49849456 None:intergenic 60.0%
GGCTAAGCTCTCCATCACCC+TGG + chr4_1:49849985-49850004 None:intergenic 60.0%
!! TTCGGCAGGGGAGGTTTTGG+TGG - chr4_1:49850086-49850105 Msa0553070:intron 60.0%
! TGTGTCCTGCGTGGACTGCA+AGG + chr4_1:49850224-49850243 None:intergenic 60.0%
CGAAGCCAACTTTCCGGCCT+TGG + chr4_1:49850279-49850298 None:intergenic 60.0%
GACGGCGCAGGCTATGCTTC+CGG - chr4_1:49847685-49847704 Msa0553070:three_prime_UTR 65.0%
CGGGGAAAGCCAGACGGTCT+TGG - chr4_1:49849315-49849334 Msa0553070:intron 65.0%
GGAGTCCTTGCAGTCCACGC+AGG - chr4_1:49850216-49850235 Msa0553070:intron 65.0%
GGCCGACGTTTCGACGCCGA+AGG - chr4_1:49847602-49847621 Msa0553070:three_prime_UTR 70.0%
AGCATAGCCTGCGCCGTCGC+CGG + chr4_1:49847683-49847702 None:intergenic 70.0%
CAACTTGCCGGCGACGGCGC+AGG - chr4_1:49847673-49847692 Msa0553070:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49847244 49850998 49847244 ID=Msa0553070;Name=Msa0553070
chr4_1 mRNA 49847244 49850998 49847244 ID=Msa0553070-mRNA-1;Parent=Msa0553070;Name=Msa0553070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=262|1|1|1|1|1|5|619|558
chr4_1 exon 49847244 49848291 49847244 ID=Msa0553070-mRNA-1:exon:14074;Parent=Msa0553070-mRNA-1
chr4_1 exon 49848758 49849108 49848758 ID=Msa0553070-mRNA-1:exon:14073;Parent=Msa0553070-mRNA-1
chr4_1 exon 49849446 49849966 49849446 ID=Msa0553070-mRNA-1:exon:14072;Parent=Msa0553070-mRNA-1
chr4_1 exon 49850239 49850355 49850239 ID=Msa0553070-mRNA-1:exon:14071;Parent=Msa0553070-mRNA-1
chr4_1 exon 49850478 49850998 49850478 ID=Msa0553070-mRNA-1:exon:14070;Parent=Msa0553070-mRNA-1
chr4_1 five_prime_UTR 49850737 49850998 49850737 ID=Msa0553070-mRNA-1:five_prime_utr;Parent=Msa0553070-mRNA-1
chr4_1 CDS 49850478 49850736 49850478 ID=Msa0553070-mRNA-1:cds;Parent=Msa0553070-mRNA-1
chr4_1 CDS 49850239 49850355 49850239 ID=Msa0553070-mRNA-1:cds;Parent=Msa0553070-mRNA-1
chr4_1 CDS 49849446 49849966 49849446 ID=Msa0553070-mRNA-1:cds;Parent=Msa0553070-mRNA-1
chr4_1 CDS 49848758 49849108 49848758 ID=Msa0553070-mRNA-1:cds;Parent=Msa0553070-mRNA-1
chr4_1 CDS 49847863 49848291 49847863 ID=Msa0553070-mRNA-1:cds;Parent=Msa0553070-mRNA-1
chr4_1 three_prime_UTR 49847244 49847862 49847244 ID=Msa0553070-mRNA-1:three_prime_utr;Parent=Msa0553070-mRNA-1
Gene Sequence

>Msa0553070

ATGGGAAGTGTTTCGTCGGAAGATGTTTCAGAGCGATGTGGAAGTTACAGTCCGAGTGCTGACATCAGCGAATCGGAAAGTTCTAGCAGTTTCTACGGCCGACGTTTCGACGCCGAAGGAGCTTCCAGCTCAGCTAATCTCTCGCCACGTCAGCTCGCCGCTCATTTCAACTTGCCGGCGACGGCGCAGGCTATGCTTCCGGTCATCGGTGGGAAAGATGTTGCTGTTTGGGATCACAAACGTGACTTGGATTTGACCGAAGTTGAAATGATGAAGGAACGTTTTGCGAAGTTGCTTTTAGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTTTGCACTGCACTTGCAATCTCTAACGCCATCACGAATCTCTCCGCGACTGTGTTTGGTGAATTATGGAGGTTGGAGCCACTAGCACCACAGAAAAAAGCAATGTGGCGTAGGGAAATGGAATGGCTACTTTGCGTGAGTGATTCAATAGTCGAGTTGGTGCCTTCTGTGCAACAATTTCCAGGTGGTGGAACTTATGAAGTAATGGCAACGCGGCCTCGCTCTGATTTGTACATCAATCTTCCTGCATTGAAGAAGCTTGACGGAATGCTGCTAAGTATGTTGGATGGGTTTTGTGATACACAGTTTTGGTATGTTGATAGAGGGATTGTGTTGGGTGATTCTAAGGATTGTGATGATTATGGTAGACCTTCTGTTAGGCAAGAAGAGAAATGGTGGCTTCCTTCTCCAAAGCTTCCACCAAATGGGTTGTGTGAGGATGATAGGAAAAGGTTGCAGCAGTGTAGGGATTGTACAAACCAGATACTTAAGGCTGCCATGGCGATTAATAGTTCTGTTCTTGCTGAAATGGAAATTCCTGCTGCTTATGTTGAATCCTTGCCAAGGAATGGTAAAGCTTGTCTTGGGGATATAATATACCGGTACATAACTGCTGGTCAGTTTTCGTCTGAATGTCTTCTTGACTGCCTGGATTTATCATCTGAGCACCACACACAAGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGTTGAAAGACTATAAGAAACTTAAAAAATCGGGGAAAGCCAGACGGTCTTGGGGTGGAAAGGTAAAGAGCCTTGTTGCTGATGGTGAGAAGAGCCACTTTCTTGTCCAACGGGCAGAGACACTACTGCAAAGCTTGAAACGCCGATTTCCTGGGCTTCCTCAAACAGCGCTAGATATGGCCAAGATACAGTATAATAAGGATGTAGGGCAGTCTATTCTTGAAAGTTATTCCAGGGTGATGGAGAGCTTAGCCTTTAACATAATGGCCAGAATCGATGATGTCCTTTATGTAGACGATACTATAAAACGATGTGCAGCTGCAGATTCTATCTTGTTCGGCAGGGGAGGTTTTGGTGGTCTGCCTATTCAAAAGCGAATGACTCCCAGCCCCTTCTCAATTCAACACACCCCATATGCCTCTCCTTTTGCTACTCCTTCGTTCTGTTCCTCCTCTCCTGTTAGTGGGAGTCCTTGCAGTCCACGCAGGACACATGATGTAAAGAGGAATGGCAAGGGTAAAGATTCCAAGGCCGGAAAGTTGGCTTCGACTGATTATGAGAAGGTATGGTCATACGCAGGAAACCTCAGCGCAAGAAGAAATTCTGGCGAGGCTCCAGAAAGAGACTGA
Protein sequence

>Msa0553070

MGSVSSEDVSERCGSYSPSADISESESSSSFYGRRFDAEGASSSANLSPRQLAAHFNLPATAQAMLPVIGGKDVAVWDHKRDLDLTEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFCDTQFWYVDRGIVLGDSKDCDDYGRPSVRQEEKWWLPSPKLPPNGLCEDDRKRLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYVESLPRNGKACLGDIIYRYITAGQFSSECLLDCLDLSSEHHTQDIANRIEAAIHVWRLKDYKKLKKSGKARRSWGGKVKSLVADGEKSHFLVQRAETLLQSLKRRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDTIKRCAAADSILFGRGGFGGLPIQKRMTPSPFSIQHTPYASPFATPSFCSSSPVSGSPCSPRRTHDVKRNGKGKDSKAGKLASTDYEKVWSYAGNLSARRNSGEAPERD*