AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177300 MtrunA17_Chr8g0347221 93.996 483 12 2 1 467 1 482 0.0 886
Msa1177300 MtrunA17_Chr7g0249921 36.994 173 100 3 86 253 95 263 8.05e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177300 AT4G01050.1 57.783 469 173 12 1 457 1 456 1.40e-150 437
Msa1177300 AT4G01050.2 57.783 469 173 12 1 457 42 497 8.22e-150 437
Msa1177300 AT3G25480.1 36.686 169 105 1 79 247 63 229 1.94e-27 110

Find 126 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTTCTTTGAAGTTTA+AGG 0.087089 8_1:+9652855 Msa1177300:CDS
TTTGTCTCGGGGACAATTTC+AGG 0.169954 8_1:-9655460 None:intergenic
TTTGTCTCGGGGACAATTTC+AGG 0.169954 8_1:-9655508 None:intergenic
TTGATACATACTGAGTATTT+TGG 0.174722 8_1:-9656266 None:intergenic
TAAATCTGCTTATGCAATTA+AGG 0.182748 8_1:+9653559 Msa1177300:CDS
TCCAAGCTCAATGCTTTCTT+TGG 0.236005 8_1:-9653725 None:intergenic
TTCGGCACAGAGTTTATTTC+AGG 0.250133 8_1:-9655556 None:intergenic
AAAGCATTGAGCTTGGATTT+TGG 0.280576 8_1:+9653731 Msa1177300:CDS
CTTGGGATTGCTGCAGCTAC+TGG 0.311101 8_1:+9654104 Msa1177300:CDS
GGTGGTGACATTGATGTTAA+TGG 0.311965 8_1:+9652538 Msa1177300:CDS
TGCTGGTGGTGTAGCTATAT+TGG 0.312430 8_1:+9652609 Msa1177300:CDS
GGACAATCTCCTAGTGCTTC+TGG 0.321123 8_1:+9652514 Msa1177300:CDS
TTTGTGAGGCTCTCAAAGTT+TGG 0.332707 8_1:-9652224 None:intergenic
TTAGTAAAGCATTTAACTTT+TGG 0.345594 8_1:+9656608 Msa1177300:three_prime_UTR
TATGTTGATTCATGAGAGTT+TGG 0.360585 8_1:+9656583 Msa1177300:three_prime_UTR
GATGGCTTGGCCGTTACTCT+TGG 0.362120 8_1:+9654086 Msa1177300:CDS
AAGCAGATTTAAATCCGTTA+AGG 0.366536 8_1:-9653547 None:intergenic
ACACCACCAGCAAGAATTAC+AGG 0.373462 8_1:-9652598 None:intergenic
TTGTGGAATGAGTGGCAAAA+TGG 0.375345 8_1:-9652120 None:intergenic
GTCTTATTGTTGGTGGAGGT+TGG 0.375445 8_1:-9655364 None:intergenic
TTTGAAGAAACCTAAGGCTT+GGG 0.375475 8_1:+9652657 Msa1177300:CDS
ATTTCATCAGCAAGCTCCTT+AGG 0.379190 8_1:-9655155 None:intergenic
ATGATGAGTTTGTTTCTTTG+TGG 0.384751 8_1:-9652137 None:intergenic
TTAACATATGAAGAAGCATT+AGG 0.389426 8_1:+9652493 Msa1177300:CDS
GGAGCTTGCTGATGAAATAA+AGG 0.391508 8_1:+9655160 Msa1177300:CDS
AGATGAAGGAGGTTTGAAAT+CGG 0.392959 8_1:-9656176 None:intergenic
CTGGCAGGATTATAGATTGT+AGG 0.394531 8_1:-9656305 None:intergenic
TTCTTCAAACCACCAACATT+TGG 0.394999 8_1:-9652781 None:intergenic
AGCAGATTTAAATCCGTTAA+GGG 0.402051 8_1:-9653546 None:intergenic
AGTAAAAGAATGTGTTGTTT+TGG 0.402239 8_1:-9652072 None:intergenic
GCTCAGTTGCTTGATATAAG+AGG 0.403750 8_1:+9652730 Msa1177300:CDS
GGGTATGGTGAAAGTGGTTT+AGG 0.407461 8_1:-9655613 None:intergenic
GTATGTTGAAGATGTTCTTC+TGG 0.410590 8_1:-9656324 None:intergenic
ATGGCTTGGCCGTTACTCTT+GGG 0.412279 8_1:+9654087 Msa1177300:CDS
ATGAAATTTAGAAGCTCAAA+GGG 0.415470 8_1:-9652185 None:intergenic
GTGAAACTCTAGGGCTTTGA+AGG 0.419099 8_1:-9656205 None:intergenic
GAGAACCCTGTAATTCTTGC+TGG 0.420485 8_1:+9652592 Msa1177300:CDS
GCAGAGTTAGTTACCCTTAA+CGG 0.420544 8_1:+9653533 Msa1177300:CDS
GAACACCAAGGTTGCTCCTA+AGG 0.431093 8_1:+9655139 Msa1177300:CDS
GAAACAATTCTCCAACTTGT+AGG 0.431254 8_1:+9654258 Msa1177300:CDS
AGCTATATTGGCAGTGCCAT+TGG 0.432928 8_1:+9652621 Msa1177300:CDS
TCAGTGGCAGTAACTTATAA+AGG 0.436972 8_1:+9652808 Msa1177300:CDS
GATTCAACACCCCAAGCCTT+AGG 0.440084 8_1:-9652667 None:intergenic
TGCAGAATAGTGGTCTTCCT+TGG 0.441992 8_1:+9653696 Msa1177300:intron
CTTCAACATACATGAAACTT+AGG 0.443694 8_1:+9656336 Msa1177300:three_prime_UTR
GATTGCTGCAGCTACTGGAT+TGG 0.443820 8_1:+9654109 Msa1177300:CDS
GTTGAAGATGTTCTTCTGGC+AGG 0.447489 8_1:-9656320 None:intergenic
GAAGGAGATGGAGATGAAGG+AGG 0.453134 8_1:-9656187 None:intergenic
ATTGCTGCAGCTACTGGATT+GGG 0.454710 8_1:+9654110 Msa1177300:CDS
ACAGAGTTTATTTCAGGAGC+AGG 0.455724 8_1:-9655550 None:intergenic
TCTCCTAGTGCTTCTGGTGG+TGG 0.456230 8_1:+9652520 Msa1177300:CDS
GTGATGGAAGCCAGATTTGA+TGG 0.456441 8_1:+9653494 Msa1177300:intron
TTCTTCATATGTTAAAGCAT+TGG 0.457715 8_1:-9652485 None:intergenic
GATGAAGGAGGTTTGAAATC+GGG 0.461874 8_1:-9656175 None:intergenic
ATGAACAATGTAGTATTCTC+AGG 0.471873 8_1:-9652880 None:intergenic
TATAAAGGTGATGATAAGCC+AGG 0.475049 8_1:+9652823 Msa1177300:CDS
CCGCCAGCTGTAGCAAGCTC+TGG 0.476058 8_1:-9655412 None:intergenic
ATTTGATGGGAACTCTGAAC+TGG 0.481515 8_1:+9653508 Msa1177300:CDS
TTTGAAGGAGATGGAGATGA+AGG 0.482325 8_1:-9656190 None:intergenic
CTCTAGGGCTTTGAAGGAGA+TGG 0.485058 8_1:-9656199 None:intergenic
AGTCCAGAGCTTGCTACAGC+TGG 0.490256 8_1:+9655409 Msa1177300:CDS
TGCAGGGAGAGTCTTATTGT+TGG 0.491625 8_1:-9655374 None:intergenic
ACCAAAGAAAGCATTGAGCT+TGG 0.491928 8_1:+9653724 Msa1177300:CDS
GGTTTGGTGTGTAATGCAGT+GGG 0.493500 8_1:-9652047 None:intergenic
TCTTGAATTCTGCAGAATAG+TGG 0.495443 8_1:+9653686 Msa1177300:intron
GGTGAAAATAGTAGAATTGA+GGG 0.495638 8_1:-9652278 None:intergenic
AGGGAGAGTCTTATTGTTGG+TGG 0.496184 8_1:-9655371 None:intergenic
CATTGGACCAACCTCAGAAA+AGG 0.496352 8_1:-9654141 None:intergenic
GGGTTTGGTGTGTAATGCAG+TGG 0.497767 8_1:-9652048 None:intergenic
GGTTTAGTGGCACAAATGTA+AGG 0.504713 8_1:-9656417 None:intergenic
TGTGCCGAAAACTGAAACAA+AGG 0.505309 8_1:+9655570 Msa1177300:CDS
GAGAGTCTTATTGTTGGTGG+AGG 0.508957 8_1:-9655368 None:intergenic
GCTTTCTTTGGTTCAGTCCA+AGG 0.508994 8_1:-9653713 None:intergenic
GATACTATCAATGATGCAAT+CGG 0.519921 8_1:+9653764 Msa1177300:CDS
TGTAGTACAAAATTATGCTA+TGG 0.521992 8_1:+9652252 Msa1177300:exon
GAAAGTGGTTTAGGCTGCAC+AGG 0.522973 8_1:-9655604 None:intergenic
TATGACATTACATATGGGTA+TGG 0.525499 8_1:-9655628 None:intergenic
ATGGGAGAAGATAGAAAGAG+AGG 0.526558 8_1:-9652101 None:intergenic
CTTCGTACAAGTGAAACTCT+AGG 0.528032 8_1:-9656215 None:intergenic
ACATATGGGTATGGTGAAAG+TGG 0.528445 8_1:-9655619 None:intergenic
CTGTCAGATAGCACAGAAAG+AGG 0.530271 8_1:-9652301 None:intergenic
TGTGGAATGAGTGGCAAAAT+GGG 0.530600 8_1:-9652119 None:intergenic
AATTTAGAAGCTCAAAGGGT+TGG 0.532878 8_1:-9652181 None:intergenic
GGGTGAAAATAGTAGAATTG+AGG 0.533070 8_1:-9652279 None:intergenic
CATGAAATTTAGAAGCTCAA+AGG 0.535206 8_1:-9652186 None:intergenic
GCAATTAAGGATGGTGCAGA+AGG 0.540296 8_1:+9653572 Msa1177300:CDS
TTGACTGAGATTAGACAAGT+TGG 0.542880 8_1:+9652754 Msa1177300:CDS
AGAAGGACCACAAGGATGGC+AGG 0.544881 8_1:+9653589 Msa1177300:CDS
AAGCTCCTTAGGAGCAACCT+TGG 0.546190 8_1:-9655144 None:intergenic
ATTGCAGGAATCTGATGGCT+TGG 0.548308 8_1:+9654073 Msa1177300:intron
ACTGAGATTAGACAAGTTGG+TGG 0.549104 8_1:+9652757 Msa1177300:CDS
TACGAAGAGAATTCTATAGC+AGG 0.550738 8_1:+9656231 Msa1177300:three_prime_UTR
TGTCAGATAGCACAGAAAGA+GGG 0.564800 8_1:-9652300 None:intergenic
TTCCGGGAAAATTAGGACAT+CGG 0.564881 8_1:+9655328 Msa1177300:intron
TGATTGTGAACATTGTGTTG+TGG 0.565253 8_1:+9656447 Msa1177300:three_prime_UTR
ATGCAAAATTAGGTGCTGAT+GGG 0.571276 8_1:+9652704 Msa1177300:CDS
TATGCAAAATTAGGTGCTGA+TGG 0.573919 8_1:+9652703 Msa1177300:CDS
TGATGGAAGCCAGATTTGAT+GGG 0.580060 8_1:+9653495 Msa1177300:intron
TTCGTACAAGTGAAACTCTA+GGG 0.581063 8_1:-9656214 None:intergenic
TTGCAGCTGATCCTACAAGT+TGG 0.583303 8_1:-9654269 None:intergenic
TTGAAGAAACCTAAGGCTTG+GGG 0.585405 8_1:+9652658 Msa1177300:CDS
CAAGAAGCTTCTATTTGCTG+AGG 0.588875 8_1:+9654308 Msa1177300:CDS
TTGTTTCTTTGTGGAATGAG+TGG 0.592557 8_1:-9652128 None:intergenic
AACCCTGTAATTCTTGCTGG+TGG 0.593908 8_1:+9652595 Msa1177300:CDS
TCTGCTTATGCAATTAAGGA+TGG 0.593981 8_1:+9653563 Msa1177300:CDS
TTGTGAACATTGTGTTGTGG+AGG 0.597009 8_1:+9656450 Msa1177300:three_prime_UTR
GTGCAGAAGGACCACAAGGA+TGG 0.597232 8_1:+9653585 Msa1177300:CDS
GGTTGATTGCAGGAATCTGA+TGG 0.599719 8_1:+9654068 Msa1177300:intron
CCAGAGCTTGCTACAGCTGG+CGG 0.602467 8_1:+9655412 Msa1177300:CDS
GTCAGATAGCACAGAAAGAG+GGG 0.603525 8_1:-9652299 None:intergenic
TGCAGCAATCCCAAGAGTAA+CGG 0.604148 8_1:-9654096 None:intergenic
GTTGGTGGACCAAATGTTGG+TGG 0.607555 8_1:+9652772 Msa1177300:CDS
AGTACAAAATTATGCTATGG+AGG 0.608891 8_1:+9652255 Msa1177300:exon
AAAATCTGAGACAAAACCAA+TGG 0.615330 8_1:-9652637 None:intergenic
TCACCACCACCAGAAGCACT+AGG 0.618550 8_1:-9652523 None:intergenic
TGTACTACAGAAAGTTTGTG+AGG 0.620051 8_1:-9652238 None:intergenic
ATAAATACCTGCCATCCTTG+TGG 0.630600 8_1:-9653596 None:intergenic
ATAAAGGTGATGATAAGCCA+GGG 0.631344 8_1:+9652824 Msa1177300:CDS
CACCACCAGCAAGAATTACA+GGG 0.636596 8_1:-9652597 None:intergenic
CAAGTTGGTGGACCAAATGT+TGG 0.652710 8_1:+9652769 Msa1177300:CDS
CAATCTCCTAGTGCTTCTGG+TGG 0.655117 8_1:+9652517 Msa1177300:CDS
GATGGTGCAGAAGGACCACA+AGG 0.670156 8_1:+9653581 Msa1177300:CDS
TGGTTTGAAGAAGAAATCAG+TGG 0.684337 8_1:+9652792 Msa1177300:CDS
TCAGTTGTGAATGTTAACAA+TGG 0.693297 8_1:+9652454 Msa1177300:CDS
GGAAAATTAGGACATCGGAA+AGG 0.694122 8_1:+9655333 Msa1177300:intron
TAATGCAGTGGGTGTCACTG+AGG 0.721359 8_1:-9652036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCTTTAATTTAATAGAA+GGG - chr8_1:9653893-9653912 None:intergenic 10.0%
!! TATTAAATTAAAGAATACTA+TGG + chr8_1:9653896-9653915 Msa1177300:intron 10.0%
!! AACAATAATAATAAATGAAA+AGG + chr8_1:9654777-9654796 Msa1177300:intron 10.0%
!!! CTATTTATTATATCTTATTT+TGG - chr8_1:9654814-9654833 None:intergenic 10.0%
!!! TCATTAAATTTTTAATTTGA+TGG + chr8_1:9655075-9655094 Msa1177300:intron 10.0%
!!! TTATTTTCTCAAATTATTAT+CGG + chr8_1:9656004-9656023 Msa1177300:intron 10.0%
!!! TTTATCAAAGAATTTTCAAA+AGG + chr8_1:9652411-9652430 Msa1177300:CDS 15.0%
!!! TTATCAAAGAATTTTCAAAA+GGG + chr8_1:9652412-9652431 Msa1177300:CDS 15.0%
!!! GTATTCTTTAATTTAATAGA+AGG - chr8_1:9653894-9653913 None:intergenic 15.0%
!! ATAAATTATTATGTTTGTGT+CGG + chr8_1:9654544-9654563 Msa1177300:intron 15.0%
!!! TTAATATTGTTTTCTTTGAA+TGG + chr8_1:9655302-9655321 Msa1177300:intron 15.0%
!! ACATGAATATAAAACAAAAT+TGG - chr8_1:9656114-9656133 None:intergenic 15.0%
!! AAAAATGCTTATGCAAAATT+AGG + chr8_1:9652694-9652713 Msa1177300:CDS 20.0%
!!! TCTGTTTACTTTCTAAAAAT+TGG + chr8_1:9652995-9653014 Msa1177300:intron 20.0%
!! TAAAAATTGGAAGATAAGTT+AGG + chr8_1:9653008-9653027 Msa1177300:intron 20.0%
!!! TTTTCTTAAATTATTACCAG+TGG + chr8_1:9653114-9653133 Msa1177300:intron 20.0%
!! TGAGTGTTTATAATTAATGT+CGG + chr8_1:9654047-9654066 Msa1177300:intron 20.0%
!! ATAAACATACAACAGAAAAA+TGG - chr8_1:9654421-9654440 None:intergenic 20.0%
!!! ATATATGAGTTAGTTTTGTA+AGG + chr8_1:9654503-9654522 Msa1177300:intron 20.0%
!!! TATATGAGTTAGTTTTGTAA+GGG + chr8_1:9654504-9654523 Msa1177300:intron 20.0%
!!! TTGAATTTCTTTTACCTATT+TGG - chr8_1:9654616-9654635 None:intergenic 20.0%
!! TAGGTAAAAGAAATTCAAAA+TGG + chr8_1:9654618-9654637 Msa1177300:intron 20.0%
!! TAAGATTAATCCAATTATAG+AGG - chr8_1:9654678-9654697 None:intergenic 20.0%
!! CTATAATTGGATTAATCTTA+CGG + chr8_1:9654678-9654697 Msa1177300:intron 20.0%
!!! TATAAGATCATATCTTTTTC+AGG - chr8_1:9654740-9654759 None:intergenic 20.0%
!!! TAAATTTTTAATTTGATGGC+AGG + chr8_1:9655079-9655098 Msa1177300:intron 20.0%
!! AAAACAATATTAAACAGGAA+GGG - chr8_1:9655295-9655314 None:intergenic 20.0%
!! CAAAGAAAACAATATTAAAC+AGG - chr8_1:9655300-9655319 None:intergenic 20.0%
!! GAAATTATGACATTACATAT+GGG - chr8_1:9655636-9655655 None:intergenic 20.0%
!! TGAAATTATGACATTACATA+TGG - chr8_1:9655637-9655656 None:intergenic 20.0%
!! ATCCAAAAATCTATCAAATA+GGG - chr8_1:9655749-9655768 None:intergenic 20.0%
!!! TTAGTAAAGCATTTAACTTT+TGG + chr8_1:9656608-9656627 Msa1177300:three_prime_UTR 20.0%
!!! AGTAAAAGAATGTGTTGTTT+TGG - chr8_1:9652075-9652094 None:intergenic 25.0%
! ATGAAATTTAGAAGCTCAAA+GGG - chr8_1:9652188-9652207 None:intergenic 25.0%
! TGTAGTACAAAATTATGCTA+TGG + chr8_1:9652252-9652271 Msa1177300:exon 25.0%
! TTCTTCATATGTTAAAGCAT+TGG - chr8_1:9652488-9652507 None:intergenic 25.0%
!!! TTAACATATGAAGAAGCATT+AGG + chr8_1:9652493-9652512 Msa1177300:CDS 25.0%
!!! CAATTTTATTTGCAGCATTT+TGG + chr8_1:9652929-9652948 Msa1177300:intron 25.0%
! TAAATCTGCTTATGCAATTA+AGG + chr8_1:9653559-9653578 Msa1177300:CDS 25.0%
! ATTTGAGCTTTCTCAAATTA+AGG + chr8_1:9653951-9653970 Msa1177300:intron 25.0%
! TATTATTGCATGTTGAGAAA+AGG - chr8_1:9654182-9654201 None:intergenic 25.0%
! CAACATGCAATAATACATTA+TGG + chr8_1:9654187-9654206 Msa1177300:intron 25.0%
!!! ATATGAGTTAGTTTTGTAAG+GGG + chr8_1:9654505-9654524 Msa1177300:intron 25.0%
! ATTAAGTGAAATAGGTAAAC+AGG + chr8_1:9654575-9654594 Msa1177300:intron 25.0%
!! AAGTTAATTTTGTGCCAAAT+AGG + chr8_1:9654599-9654618 Msa1177300:intron 25.0%
! ATTACATAAACAAGAAGAGT+TGG + chr8_1:9654835-9654854 Msa1177300:intron 25.0%
! GAAAACAATATTAAACAGGA+AGG - chr8_1:9655296-9655315 None:intergenic 25.0%
!! TTTTCTTTGAATGGAATTTC+CGG + chr8_1:9655311-9655330 Msa1177300:intron 25.0%
! GATCCAAAAATCTATCAAAT+AGG - chr8_1:9655750-9655769 None:intergenic 25.0%
! TTAATTGAACGTAACTACAT+GGG - chr8_1:9655983-9656002 None:intergenic 25.0%
! ATTAATTGAACGTAACTACA+TGG - chr8_1:9655984-9656003 None:intergenic 25.0%
!! TTGATACATACTGAGTATTT+TGG - chr8_1:9656269-9656288 None:intergenic 25.0%
! AATGTTCACAATCACAAAAA+AGG - chr8_1:9656441-9656460 None:intergenic 25.0%
!!! AAAGAATGTGTTGTTTTGGT+GGG - chr8_1:9652071-9652090 None:intergenic 30.0%
!!! AAAAGAATGTGTTGTTTTGG+TGG - chr8_1:9652072-9652091 None:intergenic 30.0%
! ATGATGAGTTTGTTTCTTTG+TGG - chr8_1:9652140-9652159 None:intergenic 30.0%
CATGAAATTTAGAAGCTCAA+AGG - chr8_1:9652189-9652208 None:intergenic 30.0%
AGTACAAAATTATGCTATGG+AGG + chr8_1:9652255-9652274 Msa1177300:exon 30.0%
GGTGAAAATAGTAGAATTGA+GGG - chr8_1:9652281-9652300 None:intergenic 30.0%
! CTTTGCATGAAAATTTTGTG+GGG - chr8_1:9652342-9652361 None:intergenic 30.0%
! GCTTTGCATGAAAATTTTGT+GGG - chr8_1:9652343-9652362 None:intergenic 30.0%
! AGCTTTGCATGAAAATTTTG+TGG - chr8_1:9652344-9652363 None:intergenic 30.0%
TCAGTTGTGAATGTTAACAA+TGG + chr8_1:9652454-9652473 Msa1177300:CDS 30.0%
!! GGTTTTGTAGATAGTGTTAT+AGG + chr8_1:9652559-9652578 Msa1177300:CDS 30.0%
! AAAATCTGAGACAAAACCAA+TGG - chr8_1:9652640-9652659 None:intergenic 30.0%
!! TCAGATTTTGAAGAAACCTA+AGG + chr8_1:9652651-9652670 Msa1177300:CDS 30.0%
!! GAAGCTTTCTTTGAAGTTTA+AGG + chr8_1:9652855-9652874 Msa1177300:CDS 30.0%
ATGAACAATGTAGTATTCTC+AGG - chr8_1:9652883-9652902 None:intergenic 30.0%
TTGTTCATTCTTGACAAGTA+AGG + chr8_1:9652895-9652914 Msa1177300:intron 30.0%
! TTGATCATTACTTCAGCTTT+TGG - chr8_1:9653232-9653251 None:intergenic 30.0%
! AATGACCACAATTTTCTGTT+TGG + chr8_1:9653254-9653273 Msa1177300:intron 30.0%
TTTCACCAAACAGAAAATTG+TGG - chr8_1:9653262-9653281 None:intergenic 30.0%
! CGTAATTTGACTTAACATGT+GGG + chr8_1:9653394-9653413 Msa1177300:intron 30.0%
! GTAATTTGACTTAACATGTG+GGG + chr8_1:9653395-9653414 Msa1177300:intron 30.0%
AGCAGATTTAAATCCGTTAA+GGG - chr8_1:9653549-9653568 None:intergenic 30.0%
AAGCAGATTTAAATCCGTTA+AGG - chr8_1:9653550-9653569 None:intergenic 30.0%
! TTGGCGAAGATAGAAAATTT+TGG - chr8_1:9653648-9653667 None:intergenic 30.0%
AATATGTGATGTGAGTGTAT+TGG - chr8_1:9653667-9653686 None:intergenic 30.0%
GATACTATCAATGATGCAAT+CGG + chr8_1:9653764-9653783 Msa1177300:CDS 30.0%
GGCAATAAGTAATAACTCAT+TGG - chr8_1:9654161-9654180 None:intergenic 30.0%
!! GTAAGTTTGTTTTTCTATGC+AGG + chr8_1:9654330-9654349 Msa1177300:intron 30.0%
AACATACAACAGAAAAATGG+TGG - chr8_1:9654418-9654437 None:intergenic 30.0%
TAATTTACACTCTCGTGTTA+TGG - chr8_1:9654481-9654500 None:intergenic 30.0%
AATTATTATGTTTGTGTCGG+TGG + chr8_1:9654547-9654566 Msa1177300:intron 30.0%
TGGCTAAGATTAAGTGAAAT+AGG + chr8_1:9654567-9654586 Msa1177300:intron 30.0%
ACCAACAATACCTCTATAAT+TGG + chr8_1:9654665-9654684 Msa1177300:intron 30.0%
!! TCCAATTATAGAGGTATTGT+TGG - chr8_1:9654669-9654688 None:intergenic 30.0%
GAAGTAAACATAAGCAAACA+CGG - chr8_1:9654935-9654954 None:intergenic 30.0%
ATATGCAATGATCTTCCTAA+TGG + chr8_1:9654983-9655002 Msa1177300:intron 30.0%
AAATGTTCTTCACTACCATT+AGG - chr8_1:9655001-9655020 None:intergenic 30.0%
!!! CTTGTTTTAGTGTTTTCTTC+CGG - chr8_1:9655106-9655125 None:intergenic 30.0%
! TAATGAGTTTTTGAACACCA+AGG + chr8_1:9655127-9655146 Msa1177300:CDS 30.0%
GCTCTTGCAACTAATTTATA+AGG - chr8_1:9655212-9655231 None:intergenic 30.0%
TTTCTTTGAATGGAATTTCC+GGG + chr8_1:9655312-9655331 Msa1177300:intron 30.0%
TATGACATTACATATGGGTA+TGG - chr8_1:9655631-9655650 None:intergenic 30.0%
AAAAATCTATCAAATAGGGC+TGG - chr8_1:9655745-9655764 None:intergenic 30.0%
! AGCCCTATTTGATAGATTTT+TGG + chr8_1:9655744-9655763 Msa1177300:intron 30.0%
ATCCTTTACTTCACATACTT+AGG - chr8_1:9655781-9655800 None:intergenic 30.0%
TATGTGTAATTGCAAAATGC+AGG - chr8_1:9655866-9655885 None:intergenic 30.0%
! CATCCTTTTCTTGCAAAAAT+GGG - chr8_1:9655905-9655924 None:intergenic 30.0%
! TCATCCTTTTCTTGCAAAAA+TGG - chr8_1:9655906-9655925 None:intergenic 30.0%
ATGAAATAAGAGACAATGTC+CGG + chr8_1:9655934-9655953 Msa1177300:intron 30.0%
CTTCAACATACATGAAACTT+AGG + chr8_1:9656336-9656355 Msa1177300:three_prime_UTR 30.0%
CAATCACAAAAAAGGTTTAG+TGG - chr8_1:9656433-9656452 None:intergenic 30.0%
!!! TCAGTTTTGAATAAGCAACA+AGG + chr8_1:9656538-9656557 Msa1177300:three_prime_UTR 30.0%
!! TATGTTGATTCATGAGAGTT+TGG + chr8_1:9656583-9656602 Msa1177300:three_prime_UTR 30.0%
! TTGTTTCTTTGTGGAATGAG+TGG - chr8_1:9652131-9652150 None:intergenic 35.0%
AATTTAGAAGCTCAAAGGGT+TGG - chr8_1:9652184-9652203 None:intergenic 35.0%
TGTACTACAGAAAGTTTGTG+AGG - chr8_1:9652241-9652260 None:intergenic 35.0%
GGGTGAAAATAGTAGAATTG+AGG - chr8_1:9652282-9652301 None:intergenic 35.0%
!! TTTTGAAGAAACCTAAGGCT+TGG + chr8_1:9652656-9652675 Msa1177300:CDS 35.0%
TTTGAAGAAACCTAAGGCTT+GGG + chr8_1:9652657-9652676 Msa1177300:CDS 35.0%
!! TATGCAAAATTAGGTGCTGA+TGG + chr8_1:9652703-9652722 Msa1177300:CDS 35.0%
!! ATGCAAAATTAGGTGCTGAT+GGG + chr8_1:9652704-9652723 Msa1177300:CDS 35.0%
TTGACTGAGATTAGACAAGT+TGG + chr8_1:9652754-9652773 Msa1177300:CDS 35.0%
TTCTTCAAACCACCAACATT+TGG - chr8_1:9652784-9652803 None:intergenic 35.0%
TGGTTTGAAGAAGAAATCAG+TGG + chr8_1:9652792-9652811 Msa1177300:CDS 35.0%
TCAGTGGCAGTAACTTATAA+AGG + chr8_1:9652808-9652827 Msa1177300:CDS 35.0%
TATAAAGGTGATGATAAGCC+AGG + chr8_1:9652823-9652842 Msa1177300:CDS 35.0%
ATAAAGGTGATGATAAGCCA+GGG + chr8_1:9652824-9652843 Msa1177300:CDS 35.0%
!! CTAGTTCTACATCATAAGCA+TGG - chr8_1:9652973-9652992 None:intergenic 35.0%
CTGAATGTAATCGCATATGT+TGG - chr8_1:9653086-9653105 None:intergenic 35.0%
TTCATAGTCCAAATGAGTGT+AGG + chr8_1:9653181-9653200 Msa1177300:intron 35.0%
TCATAGTCCAAATGAGTGTA+GGG + chr8_1:9653182-9653201 Msa1177300:intron 35.0%
TACATAGGCTATGTTCTTTG+AGG + chr8_1:9653313-9653332 Msa1177300:intron 35.0%
! GCGTAATTTGACTTAACATG+TGG + chr8_1:9653393-9653412 Msa1177300:intron 35.0%
TCTGCTTATGCAATTAAGGA+TGG + chr8_1:9653563-9653582 Msa1177300:CDS 35.0%
TCTTGAATTCTGCAGAATAG+TGG + chr8_1:9653686-9653705 Msa1177300:intron 35.0%
!!! AAAGCATTGAGCTTGGATTT+TGG + chr8_1:9653731-9653750 Msa1177300:CDS 35.0%
! TTTTCAGACTGCAAAACAGT+TGG + chr8_1:9653862-9653881 Msa1177300:intron 35.0%
GATGTATTCAAACTCTCTCT+TGG + chr8_1:9653918-9653937 Msa1177300:intron 35.0%
! AGGATTTTTGCAAGCAAGAA+AGG + chr8_1:9653971-9653990 Msa1177300:intron 35.0%
! GGATTTTTGCAAGCAAGAAA+GGG + chr8_1:9653972-9653991 Msa1177300:intron 35.0%
! AATTAATGTCGGTTGATTGC+AGG + chr8_1:9654058-9654077 Msa1177300:intron 35.0%
CGTGACATTACTCTATTTGT+AGG + chr8_1:9654233-9654252 Msa1177300:intron 35.0%
GAAACAATTCTCCAACTTGT+AGG + chr8_1:9654258-9654277 Msa1177300:CDS 35.0%
!! GTTTGTTTTTCTATGCAGGA+TGG + chr8_1:9654334-9654353 Msa1177300:intron 35.0%
!! TTATAGAGGTATTGTTGGTG+AGG - chr8_1:9654664-9654683 None:intergenic 35.0%
! TCTTACGGTTTAAGTGTTGT+TGG + chr8_1:9654693-9654712 Msa1177300:intron 35.0%
TTTCTAATGACGCAAAGTCA+AGG - chr8_1:9654887-9654906 None:intergenic 35.0%
!!! TTTTAATTTGATGGCAGGAC+CGG + chr8_1:9655084-9655103 Msa1177300:intron 35.0%
ATGGAATTTCCGGGAAAATT+AGG + chr8_1:9655321-9655340 Msa1177300:intron 35.0%
!! TGATGCTTCTACTTTTGTCT+CGG - chr8_1:9655524-9655543 None:intergenic 35.0%
!! TCTGCCTTTGTTTCAGTTTT+CGG - chr8_1:9655577-9655596 None:intergenic 35.0%
TTACTTCACATACTTAGGCA+GGG - chr8_1:9655776-9655795 None:intergenic 35.0%
TTTACTTCACATACTTAGGC+AGG - chr8_1:9655777-9655796 None:intergenic 35.0%
TGCCTAAGTATGTGAAGTAA+AGG + chr8_1:9655776-9655795 Msa1177300:intron 35.0%
CTTCTGCCTAAGTATGTAAT+TGG - chr8_1:9655810-9655829 None:intergenic 35.0%
!! AGTCCCATTTTTGCAAGAAA+AGG + chr8_1:9655899-9655918 Msa1177300:intron 35.0%
TACTGCAAGTCAAAAAAGAG+AGG - chr8_1:9656154-9656173 None:intergenic 35.0%
! AGATGAAGGAGGTTTGAAAT+CGG - chr8_1:9656179-9656198 None:intergenic 35.0%
TTCGTACAAGTGAAACTCTA+GGG - chr8_1:9656217-9656236 None:intergenic 35.0%
TACGAAGAGAATTCTATAGC+AGG + chr8_1:9656231-9656250 Msa1177300:three_prime_UTR 35.0%
GTATGTTGAAGATGTTCTTC+TGG - chr8_1:9656327-9656346 None:intergenic 35.0%
TGATTGTGAACATTGTGTTG+TGG + chr8_1:9656447-9656466 Msa1177300:three_prime_UTR 35.0%
!!! ATGTGTTGTTTTGGTGGGTT+TGG - chr8_1:9652066-9652085 None:intergenic 40.0%
ATGGGAGAAGATAGAAAGAG+AGG - chr8_1:9652104-9652123 None:intergenic 40.0%
TGTGGAATGAGTGGCAAAAT+GGG - chr8_1:9652122-9652141 None:intergenic 40.0%
TTGTGGAATGAGTGGCAAAA+TGG - chr8_1:9652123-9652142 None:intergenic 40.0%
TTTGTGAGGCTCTCAAAGTT+TGG - chr8_1:9652227-9652246 None:intergenic 40.0%
TGTCAGATAGCACAGAAAGA+GGG - chr8_1:9652303-9652322 None:intergenic 40.0%
GGTGGTGACATTGATGTTAA+TGG + chr8_1:9652538-9652557 Msa1177300:CDS 40.0%
TTGAAGAAACCTAAGGCTTG+GGG + chr8_1:9652658-9652677 Msa1177300:CDS 40.0%
GCTCAGTTGCTTGATATAAG+AGG + chr8_1:9652730-9652749 Msa1177300:CDS 40.0%
! ACTGAGATTAGACAAGTTGG+TGG + chr8_1:9652757-9652776 Msa1177300:CDS 40.0%
GAAAGCTTCTTCAAAAACCC+TGG - chr8_1:9652844-9652863 None:intergenic 40.0%
ATCGATGTCAGTGTTGTATC+CGG + chr8_1:9653143-9653162 Msa1177300:intron 40.0%
CATAGTCCAAATGAGTGTAG+GGG + chr8_1:9653183-9653202 Msa1177300:intron 40.0%
ATAGTCCAAATGAGTGTAGG+GGG + chr8_1:9653184-9653203 Msa1177300:intron 40.0%
! AGTTTTACCAGTCACCACAT+AGG + chr8_1:9653289-9653308 Msa1177300:intron 40.0%
! GTTTTACCAGTCACCACATA+GGG + chr8_1:9653290-9653309 Msa1177300:intron 40.0%
CTGATTGAGTGAACTTGTGA+TGG + chr8_1:9653478-9653497 Msa1177300:intron 40.0%
TGATGGAAGCCAGATTTGAT+GGG + chr8_1:9653495-9653514 Msa1177300:intron 40.0%
TTCAGAGTTCCCATCAAATC+TGG - chr8_1:9653507-9653526 None:intergenic 40.0%
ATTTGATGGGAACTCTGAAC+TGG + chr8_1:9653508-9653527 Msa1177300:CDS 40.0%
GCAGAGTTAGTTACCCTTAA+CGG + chr8_1:9653533-9653552 Msa1177300:CDS 40.0%
ATAAATACCTGCCATCCTTG+TGG - chr8_1:9653599-9653618 None:intergenic 40.0%
!! ACCAAAGAAAGCATTGAGCT+TGG + chr8_1:9653724-9653743 Msa1177300:CDS 40.0%
TCCAAGCTCAATGCTTTCTT+TGG - chr8_1:9653728-9653747 None:intergenic 40.0%
TGCAATCGGAGTATGTATCT+TGG + chr8_1:9653778-9653797 Msa1177300:intron 40.0%
!!! GTATTAGCCTTTTCTGAGGT+TGG + chr8_1:9654134-9654153 Msa1177300:intron 40.0%
! CAAGAAGCTTCTATTTGCTG+AGG + chr8_1:9654308-9654327 Msa1177300:CDS 40.0%
TTTCTGGATTCAACAGTGCA+TGG - chr8_1:9654394-9654413 None:intergenic 40.0%
ACAGAAAAATGGTGGCTTTC+TGG - chr8_1:9654410-9654429 None:intergenic 40.0%
! TACGGTTTAAGTGTTGTTGG+AGG + chr8_1:9654696-9654715 Msa1177300:intron 40.0%
! ACGGTTTAAGTGTTGTTGGA+GGG + chr8_1:9654697-9654716 Msa1177300:intron 40.0%
CATTGCATATGAGAGAGTAG+AGG - chr8_1:9654973-9654992 None:intergenic 40.0%
ATTTCATCAGCAAGCTCCTT+AGG - chr8_1:9655158-9655177 None:intergenic 40.0%
!! GGAGCTTGCTGATGAAATAA+AGG + chr8_1:9655160-9655179 Msa1177300:CDS 40.0%
GAGCAATGCATCACAATTGA+CGG + chr8_1:9655228-9655247 Msa1177300:intron 40.0%
TTCCGGGAAAATTAGGACAT+CGG + chr8_1:9655328-9655347 Msa1177300:intron 40.0%
! TTCCGATGTCCTAATTTTCC+CGG - chr8_1:9655333-9655352 None:intergenic 40.0%
GGAAAATTAGGACATCGGAA+AGG + chr8_1:9655333-9655352 Msa1177300:intron 40.0%
! GACTATTTTCTGTTGGTGCA+GGG - chr8_1:9655393-9655412 None:intergenic 40.0%
!!! AGCTCTGGACTATTTTCTGT+TGG - chr8_1:9655400-9655419 None:intergenic 40.0%
!! TGCTGCTTCTACTTTTGTCT+CGG - chr8_1:9655476-9655495 None:intergenic 40.0%
!! ATGCTTCTACTTTTGTCTCG+GGG - chr8_1:9655522-9655541 None:intergenic 40.0%
!! GATGCTTCTACTTTTGTCTC+GGG - chr8_1:9655523-9655542 None:intergenic 40.0%
ACAGAGTTTATTTCAGGAGC+AGG - chr8_1:9655553-9655572 None:intergenic 40.0%
TTCGGCACAGAGTTTATTTC+AGG - chr8_1:9655559-9655578 None:intergenic 40.0%
TGTGCCGAAAACTGAAACAA+AGG + chr8_1:9655570-9655589 Msa1177300:CDS 40.0%
ACATATGGGTATGGTGAAAG+TGG - chr8_1:9655622-9655641 None:intergenic 40.0%
TCTATCAAATAGGGCTGGAA+AGG - chr8_1:9655740-9655759 None:intergenic 40.0%
GACGTGCCAATTACATACTT+AGG + chr8_1:9655801-9655820 Msa1177300:intron 40.0%
GCCAATGTCTATATTGTGTC+CGG + chr8_1:9656036-9656055 Msa1177300:intron 40.0%
ACCGGACACAATATAGACAT+TGG - chr8_1:9656040-9656059 None:intergenic 40.0%
TGAAACACTTTCACAGACAC+CGG - chr8_1:9656058-9656077 None:intergenic 40.0%
! GATGAAGGAGGTTTGAAATC+GGG - chr8_1:9656178-9656197 None:intergenic 40.0%
TTTGAAGGAGATGGAGATGA+AGG - chr8_1:9656193-9656212 None:intergenic 40.0%
CTTCGTACAAGTGAAACTCT+AGG - chr8_1:9656218-9656237 None:intergenic 40.0%
CTGGCAGGATTATAGATTGT+AGG - chr8_1:9656308-9656327 None:intergenic 40.0%
GGTTTAGTGGCACAAATGTA+AGG - chr8_1:9656420-9656439 None:intergenic 40.0%
TTGTGAACATTGTGTTGTGG+AGG + chr8_1:9656450-9656469 Msa1177300:three_prime_UTR 40.0%
!! GGTTTGGTGTGTAATGCAGT+GGG - chr8_1:9652050-9652069 None:intergenic 45.0%
GTCAGATAGCACAGAAAGAG+GGG - chr8_1:9652302-9652321 None:intergenic 45.0%
CTGTCAGATAGCACAGAAAG+AGG - chr8_1:9652304-9652323 None:intergenic 45.0%
GAGAACCCTGTAATTCTTGC+TGG + chr8_1:9652592-9652611 Msa1177300:CDS 45.0%
AACCCTGTAATTCTTGCTGG+TGG + chr8_1:9652595-9652614 Msa1177300:CDS 45.0%
CACCACCAGCAAGAATTACA+GGG - chr8_1:9652600-9652619 None:intergenic 45.0%
ACACCACCAGCAAGAATTAC+AGG - chr8_1:9652601-9652620 None:intergenic 45.0%
! TGCTGGTGGTGTAGCTATAT+TGG + chr8_1:9652609-9652628 Msa1177300:CDS 45.0%
AGCTATATTGGCAGTGCCAT+TGG + chr8_1:9652621-9652640 Msa1177300:CDS 45.0%
!! CAAGTTGGTGGACCAAATGT+TGG + chr8_1:9652769-9652788 Msa1177300:CDS 45.0%
! TGAAGCACTAACACAGACAC+CGG - chr8_1:9653165-9653184 None:intergenic 45.0%
AAGTTCCCCCTACACTCATT+TGG - chr8_1:9653192-9653211 None:intergenic 45.0%
TATGTACCCTATGTGGTGAC+TGG - chr8_1:9653299-9653318 None:intergenic 45.0%
AGTCACCACATAGGGTACAT+AGG + chr8_1:9653298-9653317 Msa1177300:intron 45.0%
CATAGCCTATGTACCCTATG+TGG - chr8_1:9653306-9653325 None:intergenic 45.0%
TACGCAGACTGCAGATGTAT+CGG - chr8_1:9653378-9653397 None:intergenic 45.0%
! GTGATGGAAGCCAGATTTGA+TGG + chr8_1:9653494-9653513 Msa1177300:intron 45.0%
GCAATTAAGGATGGTGCAGA+AGG + chr8_1:9653572-9653591 Msa1177300:CDS 45.0%
TGCAGAATAGTGGTCTTCCT+TGG + chr8_1:9653696-9653715 Msa1177300:intron 45.0%
! GCTTTCTTTGGTTCAGTCCA+AGG - chr8_1:9653716-9653735 None:intergenic 45.0%
GCAAGCAAGAAAGGGAACAT+AGG + chr8_1:9653980-9653999 Msa1177300:intron 45.0%
GGTTGATTGCAGGAATCTGA+TGG + chr8_1:9654068-9654087 Msa1177300:intron 45.0%
ATTGCAGGAATCTGATGGCT+TGG + chr8_1:9654073-9654092 Msa1177300:intron 45.0%
TGCAGCAATCCCAAGAGTAA+CGG - chr8_1:9654099-9654118 None:intergenic 45.0%
ATTGCTGCAGCTACTGGATT+GGG + chr8_1:9654110-9654129 Msa1177300:CDS 45.0%
!!! GGGTGTATTAGCCTTTTCTG+AGG + chr8_1:9654130-9654149 Msa1177300:CDS 45.0%
CATTGGACCAACCTCAGAAA+AGG - chr8_1:9654144-9654163 None:intergenic 45.0%
TTGCAGCTGATCCTACAAGT+TGG - chr8_1:9654272-9654291 None:intergenic 45.0%
! CGGTTTAAGTGTTGTTGGAG+GGG + chr8_1:9654698-9654717 Msa1177300:intron 45.0%
! GTCTTATTGTTGGTGGAGGT+TGG - chr8_1:9655367-9655386 None:intergenic 45.0%
!! GAGAGTCTTATTGTTGGTGG+AGG - chr8_1:9655371-9655390 None:intergenic 45.0%
!! AGGGAGAGTCTTATTGTTGG+TGG - chr8_1:9655374-9655393 None:intergenic 45.0%
!! TGCAGGGAGAGTCTTATTGT+TGG - chr8_1:9655377-9655396 None:intergenic 45.0%
! GGACTATTTTCTGTTGGTGC+AGG - chr8_1:9655394-9655413 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG - chr8_1:9655463-9655482 None:intergenic 45.0%
!! CTGCTTCTACTTTTGTCTCG+GGG - chr8_1:9655474-9655493 None:intergenic 45.0%
!! GCTGCTTCTACTTTTGTCTC+GGG - chr8_1:9655475-9655494 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG - chr8_1:9655463-9655482 None:intergenic 45.0%
GGGTATGGTGAAAGTGGTTT+AGG - chr8_1:9655616-9655635 None:intergenic 45.0%
TTCACATACTTAGGCAGGGA+CGG - chr8_1:9655772-9655791 None:intergenic 45.0%
! CGTAACTACATGGGTTGTGT+CGG - chr8_1:9655974-9655993 None:intergenic 45.0%
AGAGAGGCAGAGTATGTGTT+AGG - chr8_1:9656138-9656157 None:intergenic 45.0%
!! GTGAAACTCTAGGGCTTTGA+AGG - chr8_1:9656208-9656227 None:intergenic 45.0%
GTTGAAGATGTTCTTCTGGC+AGG - chr8_1:9656323-9656342 None:intergenic 45.0%
!! ATTAAAAATTTAATGAAAAA+AGG - chr8_1:9655071-9655090 None:intergenic 5.0%
!! GGGTTTGGTGTGTAATGCAG+TGG - chr8_1:9652051-9652070 None:intergenic 50.0%
GGACAATCTCCTAGTGCTTC+TGG + chr8_1:9652514-9652533 Msa1177300:CDS 50.0%
CAATCTCCTAGTGCTTCTGG+TGG + chr8_1:9652517-9652536 Msa1177300:CDS 50.0%
GATTCAACACCCCAAGCCTT+AGG - chr8_1:9652670-9652689 None:intergenic 50.0%
! GTTGGTGGACCAAATGTTGG+TGG + chr8_1:9652772-9652791 Msa1177300:CDS 50.0%
GGCGTCACACTAACACATGT+CGG - chr8_1:9653065-9653084 None:intergenic 50.0%
TGACATCGATACATCGCCAC+TGG - chr8_1:9653133-9653152 None:intergenic 50.0%
! ATGGCTTGGCCGTTACTCTT+GGG + chr8_1:9654087-9654106 Msa1177300:CDS 50.0%
GATTGCTGCAGCTACTGGAT+TGG + chr8_1:9654109-9654128 Msa1177300:CDS 50.0%
! GGTATTGTTGGTGAGGCAGA+TGG - chr8_1:9654657-9654676 None:intergenic 50.0%
GAACACCAAGGTTGCTCCTA+AGG + chr8_1:9655139-9655158 Msa1177300:CDS 50.0%
AAGCTCCTTAGGAGCAACCT+TGG - chr8_1:9655147-9655166 None:intergenic 50.0%
GAAAGTGGTTTAGGCTGCAC+AGG - chr8_1:9655607-9655626 None:intergenic 50.0%
AGACAATGTCCGGTGTCTGA+CGG + chr8_1:9655944-9655963 Msa1177300:intron 50.0%
GAAGGAGATGGAGATGAAGG+AGG - chr8_1:9656190-9656209 None:intergenic 50.0%
!! CTCTAGGGCTTTGAAGGAGA+TGG - chr8_1:9656202-9656221 None:intergenic 50.0%
TCTCCTAGTGCTTCTGGTGG+TGG + chr8_1:9652520-9652539 Msa1177300:CDS 55.0%
!! TCACCACCACCAGAAGCACT+AGG - chr8_1:9652526-9652545 None:intergenic 55.0%
GATGGTGCAGAAGGACCACA+AGG + chr8_1:9653581-9653600 Msa1177300:CDS 55.0%
GTGCAGAAGGACCACAAGGA+TGG + chr8_1:9653585-9653604 Msa1177300:CDS 55.0%
AGAAGGACCACAAGGATGGC+AGG + chr8_1:9653589-9653608 Msa1177300:CDS 55.0%
! GATGGCTTGGCCGTTACTCT+TGG + chr8_1:9654086-9654105 Msa1177300:CDS 55.0%
CTTGGGATTGCTGCAGCTAC+TGG + chr8_1:9654104-9654123 Msa1177300:CDS 55.0%
!! AGTCCAGAGCTTGCTACAGC+TGG + chr8_1:9655409-9655428 Msa1177300:CDS 55.0%
GTCGGTATACCGTCAGACAC+CGG - chr8_1:9655956-9655975 None:intergenic 55.0%
!! TGAGGCAGATGGTGCTGCAG+GGG - chr8_1:9654646-9654665 None:intergenic 60.0%
!! GTGAGGCAGATGGTGCTGCA+GGG - chr8_1:9654647-9654666 None:intergenic 60.0%
!! CCAGAGCTTGCTACAGCTGG+CGG + chr8_1:9655412-9655431 Msa1177300:CDS 60.0%
!! GGTGAGGCAGATGGTGCTGC+AGG - chr8_1:9654648-9654667 None:intergenic 65.0%
CCGCCAGCTGTAGCAAGCTC+TGG - chr8_1:9655415-9655434 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9652037 9656735 9652037 ID=Msa1177300;Name=Msa1177300
chr8_1 mRNA 9652037 9656735 9652037 ID=Msa1177300-mRNA-1;Parent=Msa1177300;Name=Msa1177300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=234|1|0.87|1|1|1|8|516|467
chr8_1 exon 9652037 9652911 9652037 ID=Msa1177300-mRNA-1:exon:3272;Parent=Msa1177300-mRNA-1
chr8_1 exon 9653508 9653610 9653508 ID=Msa1177300-mRNA-1:exon:3273;Parent=Msa1177300-mRNA-1
chr8_1 exon 9653701 9653787 9653701 ID=Msa1177300-mRNA-1:exon:3274;Parent=Msa1177300-mRNA-1
chr8_1 exon 9654080 9654151 9654080 ID=Msa1177300-mRNA-1:exon:3275;Parent=Msa1177300-mRNA-1
chr8_1 exon 9654255 9654329 9654255 ID=Msa1177300-mRNA-1:exon:3276;Parent=Msa1177300-mRNA-1
chr8_1 exon 9655101 9655181 9655101 ID=Msa1177300-mRNA-1:exon:3277;Parent=Msa1177300-mRNA-1
chr8_1 exon 9655343 9655639 9655343 ID=Msa1177300-mRNA-1:exon:3278;Parent=Msa1177300-mRNA-1
chr8_1 exon 9656172 9656735 9656172 ID=Msa1177300-mRNA-1:exon:3279;Parent=Msa1177300-mRNA-1
chr8_1 five_prime_UTR 9652037 9652270 9652037 ID=Msa1177300-mRNA-1:five_prime_utr;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9652271 9652911 9652271 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9653508 9653610 9653508 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9653701 9653787 9653701 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9654080 9654151 9654080 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9654255 9654329 9654255 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9655101 9655181 9655101 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9655343 9655639 9655343 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 CDS 9656172 9656219 9656172 ID=Msa1177300-mRNA-1:cds;Parent=Msa1177300-mRNA-1
chr8_1 three_prime_UTR 9656220 9656735 9656220 ID=Msa1177300-mRNA-1:three_prime_utr;Parent=Msa1177300-mRNA-1
Gene Sequence

>Msa1177300

ATGGAGGCCCTCAATTCTACTATTTTCACCCCTCTTTCTGTGCTATCTGACAGAACAAAACACACACACCCCACAAAATTTTCATGCAAAGCTTCAAACTTTTCAACTTCAATCAACAAAAAACAGAACTTAAGAGAGTTTTTATCAAAGAATTTTCAAAAGGGTCTTTTTCTTGCTGCAGCTTCAGTTGTGAATGTTAACAATGGTGAATTTGCCAATGCTTTAACATATGAAGAAGCATTAGGACAATCTCCTAGTGCTTCTGGTGGTGGTGACATTGATGTTAATGGTTTTGTAGATAGTGTTATAGGCTTTGCAACTGAGAACCCTGTAATTCTTGCTGGTGGTGTAGCTATATTGGCAGTGCCATTGGTTTTGTCTCAGATTTTGAAGAAACCTAAGGCTTGGGGTGTTGAATCTGCTAAAAATGCTTATGCAAAATTAGGTGCTGATGGGAATGCTCAGTTGCTTGATATAAGAGGTTTGACTGAGATTAGACAAGTTGGTGGACCAAATGTTGGTGGTTTGAAGAAGAAATCAGTGGCAGTAACTTATAAAGGTGATGATAAGCCAGGGTTTTTGAAGAAGCTTTCTTTGAAGTTTAAGGAGCCTGAGAATACTACATTGTTCATTCTTGACAAATTTGATGGGAACTCTGAACTGGTTGCAGAGTTAGTTACCCTTAACGGATTTAAATCTGCTTATGCAATTAAGGATGGTGCAGAAGGACCACAAGGATGGCAGAATAGTGGTCTTCCTTGGACTGAACCAAAGAAAGCATTGAGCTTGGATTTTGGCAGTTTGACAGATACTATCAATGATGCAATCGGAGAATCTGATGGCTTGGCCGTTACTCTTGGGATTGCTGCAGCTACTGGATTGGGTGTATTAGCCTTTTCTGAGGTAGAAACAATTCTCCAACTTGTAGGATCAGCTGCAATTGTTCAGTTTGCAAGCAAGAAGCTTCTATTTGCTGAGGACCGGAAGAAAACACTAAAACAAGTTAATGAGTTTTTGAACACCAAGGTTGCTCCTAAGGAGCTTGCTGATGAAATAAAGGACATCGGAAAGGCTCTTCTACCAACCTCCACCAACAATAAGACTCTCCCTGCACCAACAGAAAATAGTCCAGAGCTTGCTACAGCTGGCGGAACTGTATTGAACGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCAGCAGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCATCAGCAGAACCTGCTCCTGAAATAAACTCTGTGCCGAAAACTGAAACAAAGGCAGAGTCAATTCCTGTGCAGCCTAAACCACTTTCACCATACCCATATTATCCCGATTTCAAACCTCCTTCATCTCCATCTCCTTCAAAGCCCTAG

Protein sequence

>Msa1177300

MEALNSTIFTPLSVLSDRTKHTHPTKFSCKASNFSTSINKKQNLREFLSKNFQKGLFLAAASVVNVNNGEFANALTYEEALGQSPSASGGGDIDVNGFVDSVIGFATENPVILAGGVAILAVPLVLSQILKKPKAWGVESAKNAYAKLGADGNAQLLDIRGLTEIRQVGGPNVGGLKKKSVAVTYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTLNGFKSAYAIKDGAEGPQGWQNSGLPWTEPKKALSLDFGSLTDTINDAIGESDGLAVTLGIAAATGLGVLAFSEVETILQLVGSAAIVQFASKKLLFAEDRKKTLKQVNEFLNTKVAPKELADEIKDIGKALLPTSTNNKTLPAPTENSPELATAGGTVLNAEATPEIVPETKVEAAAEATPEIVPETKVEASAEPAPEINSVPKTETKAESIPVQPKPLSPYPYYPDFKPPSSPSPSKP*