AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553120 MtrunA17_Chr4g0038751 97.674 301 5 2 1 301 1 299 0.0 607
Msa0553120 MtrunA17_Chr4g0076731 53.947 152 65 2 14 162 53 202 2.46e-56 187
Msa0553120 MtrunA17_Chr8g0361731 45.771 201 89 5 4 188 1 197 1.51e-53 179
Msa0553120 MtrunA17_Chr6g0453131 46.231 199 88 5 16 199 16 210 4.78e-53 178
Msa0553120 MtrunA17_Chr5g0417001 43.684 190 90 3 12 188 11 196 4.95e-50 170
Msa0553120 MtrunA17_Chr2g0326361 39.744 234 118 5 17 238 16 238 1.34e-47 162
Msa0553120 MtrunA17_Chr2g0318101 40.476 210 103 5 6 198 5 209 1.63e-47 162
Msa0553120 MtrunA17_Chr5g0442771 37.339 233 124 4 12 222 15 247 2.27e-47 161
Msa0553120 MtrunA17_Chr5g0398971 41.791 201 106 4 17 208 9 207 3.31e-47 161
Msa0553120 MtrunA17_Chr7g0252971 43.750 192 88 4 9 180 1 192 4.50e-47 161
Msa0553120 MtrunA17_Chr3g0124761 46.386 166 77 3 9 166 1 162 1.47e-46 158
Msa0553120 MtrunA17_Chr5g0417791 48.148 162 72 2 17 169 5 163 2.62e-45 154
Msa0553120 MtrunA17_Chr4g0018391 44.586 157 78 3 17 167 9 162 3.77e-45 156
Msa0553120 MtrunA17_Chr5g0400461 40.000 215 113 5 17 220 8 217 6.05e-45 155
Msa0553120 MtrunA17_Chr8g0359921 49.375 160 70 3 13 164 11 167 7.29e-45 155
Msa0553120 MtrunA17_Chr1g0201021 40.000 195 107 3 15 207 19 205 8.65e-45 160
Msa0553120 MtrunA17_Chr4g0042561 47.561 164 74 2 17 171 11 171 1.42e-44 152
Msa0553120 MtrunA17_Chr2g0318081 49.375 160 72 4 13 166 13 169 1.58e-44 154
Msa0553120 MtrunA17_Chr4g0056541 49.007 151 68 3 17 161 9 156 1.60e-44 155
Msa0553120 MtrunA17_Chr6g0481091 44.242 165 82 3 17 174 8 169 1.72e-44 151
Msa0553120 MtrunA17_Chr4g0047841 42.021 188 79 4 6 164 5 191 4.38e-44 153
Msa0553120 MtrunA17_Chr2g0309891 42.690 171 84 4 17 179 8 172 5.37e-44 153
Msa0553120 MtrunA17_Chr3g0091921 45.402 174 81 5 4 166 1 171 5.93e-44 152
Msa0553120 MtrunA17_Chr5g0405211 39.024 205 116 3 12 210 5 206 7.60e-44 153
Msa0553120 MtrunA17_Chr8g0372121 46.296 162 78 4 12 167 3 161 7.78e-44 152
Msa0553120 MtrunA17_Chr3g0109821 43.407 182 90 4 17 188 8 186 9.72e-44 158
Msa0553120 MtrunA17_Chr4g0017921 46.471 170 83 4 17 181 10 176 1.01e-43 152
Msa0553120 MtrunA17_Chr4g0060931 44.000 175 83 5 4 166 1 172 1.11e-43 152
Msa0553120 MtrunA17_Chr8g0364791 50.980 153 65 3 16 161 7 156 1.59e-43 154
Msa0553120 MtrunA17_Chr7g0263931 41.584 202 104 4 6 207 2 189 3.24e-43 150
Msa0553120 MtrunA17_Chr3g0130101 45.000 160 78 3 9 161 1 157 7.55e-43 150
Msa0553120 MtrunA17_Chr8g0346001 45.714 175 75 4 17 174 17 188 1.13e-42 152
Msa0553120 MtrunA17_Chr2g0311661 38.696 230 109 6 1 204 1 224 1.35e-42 148
Msa0553120 MtrunA17_Chr7g0266701 43.605 172 77 6 17 171 6 174 1.76e-42 147
Msa0553120 MtrunA17_Chr2g0309331 46.707 167 81 5 17 177 12 176 1.83e-42 149
Msa0553120 MtrunA17_Chr5g0433781 46.154 156 74 4 17 165 8 160 2.09e-42 154
Msa0553120 MtrunA17_Chr6g0484441 41.463 164 90 2 17 177 7 167 3.63e-42 147
Msa0553120 MtrunA17_Chr3g0130731 44.304 158 76 2 17 166 9 162 3.64e-42 147
Msa0553120 MtrunA17_Chr4g0054791 43.956 182 95 3 17 191 8 189 7.19e-42 147
Msa0553120 MtrunA17_Chr3g0139331 45.570 158 82 2 12 166 8 164 7.37e-42 147
Msa0553120 MtrunA17_Chr1g0200561 45.963 161 78 3 9 163 13 170 9.43e-42 147
Msa0553120 MtrunA17_Chr2g0311651 42.328 189 84 5 1 164 1 189 1.27e-41 146
Msa0553120 MtrunA17_Chr6g0453451 36.864 236 128 6 17 239 22 249 1.82e-41 145
Msa0553120 MtrunA17_Chr6g0461661 39.320 206 109 5 7 197 9 213 2.08e-40 144
Msa0553120 MtrunA17_Chr1g0147421 44.025 159 84 3 12 166 24 181 2.13e-40 144
Msa0553120 MtrunA17_Chr8g0384721 44.654 159 75 4 17 166 9 163 2.50e-40 142
Msa0553120 MtrunA17_Chr8g0384201 48.366 153 69 3 16 161 7 156 3.39e-40 146
Msa0553120 MtrunA17_Chr3g0144271 44.643 168 78 6 1 158 2 164 4.06e-40 144
Msa0553120 MtrunA17_Chr2g0316971 51.969 127 60 1 17 143 25 150 4.23e-40 144
Msa0553120 MtrunA17_Chr1g0197351 37.634 279 132 8 17 259 44 316 7.97e-40 145
Msa0553120 MtrunA17_Chr4g0026141 39.899 198 104 5 12 196 2 197 8.97e-40 140
Msa0553120 MtrunA17_Chr3g0092671 46.795 156 71 5 17 164 7 158 1.81e-39 145
Msa0553120 MtrunA17_Chr1g0197361 44.516 155 76 4 17 164 10 161 1.66e-38 143
Msa0553120 MtrunA17_Chr5g0428991 36.638 232 123 7 18 236 28 248 1.88e-38 143
Msa0553120 MtrunA17_Chr7g0253011 43.671 158 81 3 17 166 19 176 2.40e-38 139
Msa0553120 MtrunA17_Chr3g0128111 37.681 207 116 5 18 217 45 245 2.68e-38 135
Msa0553120 MtrunA17_Chr3g0128151 38.739 222 111 9 15 219 21 234 1.61e-37 140
Msa0553120 MtrunA17_Chr7g0214071 41.573 178 93 5 4 174 1 174 1.95e-37 133
Msa0553120 MtrunA17_Chr1g0183741 37.895 190 103 5 17 203 12 189 3.08e-37 133
Msa0553120 MtrunA17_Chr7g0217721 46.358 151 74 3 1 147 1 148 3.87e-37 135
Msa0553120 MtrunA17_Chr2g0312321 43.373 166 78 5 4 161 1 158 6.33e-37 133
Msa0553120 MtrunA17_Chr7g0261411 42.177 147 79 3 17 160 12 155 5.82e-36 130
Msa0553120 MtrunA17_Chr2g0321631 41.379 174 82 6 17 174 6 175 1.09e-35 129
Msa0553120 MtrunA17_Chr7g0217711 45.578 147 73 3 1 143 1 144 1.17e-35 126
Msa0553120 MtrunA17_Chr8g0385991 49.606 127 61 2 17 143 16 139 2.71e-34 124
Msa0553120 MtrunA17_Chr8g0345671 43.056 144 77 4 18 158 14 155 1.57e-30 118
Msa0553120 MtrunA17_Chr8g0345691 43.056 144 77 4 18 158 15 156 4.79e-30 117
Msa0553120 MtrunA17_Chr3g0131911 39.429 175 90 4 4 164 1 173 6.49e-30 113
Msa0553120 MtrunA17_Chr8g0345711 41.406 128 70 4 18 142 15 140 3.47e-26 101
Msa0553120 MtrunA17_Chr3g0113001 52.941 85 37 1 63 147 13 94 3.07e-25 102
Msa0553120 MtrunA17_Chr2g0321741 39.024 123 69 3 39 160 16 133 9.98e-25 102
Msa0553120 MtrunA17_Chr4g0050701 35.256 156 81 3 17 161 13 159 3.20e-23 94.4
Msa0553120 MtrunA17_Chr8g0345721 34.615 156 68 4 18 141 38 191 3.41e-22 92.0
Msa0553120 MtrunA17_Chr8g0345741 37.956 137 76 5 26 159 2 132 1.18e-21 89.4
Msa0553120 MtrunA17_Chr7g0243371 44.578 83 45 1 68 150 17 98 1.23e-21 88.2
Msa0553120 MtrunA17_Chr8g0345701 40.136 147 66 7 18 146 10 152 7.63e-21 87.8
Msa0553120 MtrunA17_Chr8g0345731 38.462 130 74 4 18 142 27 155 1.28e-20 87.0
Msa0553120 MtrunA17_Chr3g0113031 41.935 93 42 2 78 161 3 92 4.53e-17 79.3
Msa0553120 MtrunA17_Chr8g0384351 35.185 162 74 8 17 173 12 147 8.92e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553120 AT2G17040.1 60.279 287 95 7 14 298 5 274 6.39e-112 325
Msa0553120 AT2G02450.1 53.642 151 65 2 14 161 50 198 2.80e-57 189
Msa0553120 AT2G02450.2 53.642 151 65 2 14 161 50 198 3.18e-57 190
Msa0553120 AT5G39820.1 58.647 133 54 1 12 144 17 148 5.35e-53 176
Msa0553120 AT1G26870.1 45.116 215 88 7 12 210 13 213 1.65e-50 172
Msa0553120 AT1G62700.1 47.771 157 73 3 17 167 9 162 7.69e-48 165
Msa0553120 AT1G62700.2 47.771 157 73 3 17 167 9 162 7.69e-48 165
Msa0553120 AT3G10480.2 51.974 152 63 3 17 161 29 177 2.77e-47 164
Msa0553120 AT3G10480.1 52.288 153 62 4 17 161 29 178 5.41e-47 164
Msa0553120 AT4G27410.2 51.266 158 68 5 13 164 11 165 1.91e-46 158
Msa0553120 AT1G69490.1 44.693 179 86 3 10 178 3 178 1.23e-45 155
Msa0553120 AT3G10490.1 49.359 156 62 5 17 161 29 178 1.52e-45 154
Msa0553120 AT2G43000.1 49.045 157 71 3 16 166 19 172 1.63e-45 155
Msa0553120 AT1G12260.2 43.915 189 84 5 17 199 9 181 1.75e-45 157
Msa0553120 AT1G34180.3 44.000 175 88 3 13 185 14 180 3.11e-45 159
Msa0553120 AT1G01720.1 48.701 154 66 3 17 161 9 158 3.21e-45 155
Msa0553120 AT1G12260.1 43.915 189 84 5 17 199 9 181 4.74e-45 157
Msa0553120 AT3G17730.1 46.875 160 75 3 17 169 8 164 5.49e-45 153
Msa0553120 AT5G04410.1 49.697 165 72 5 17 173 11 172 1.08e-44 160
Msa0553120 AT1G77450.1 44.211 190 89 5 17 198 12 192 1.09e-44 152
Msa0553120 AT3G10490.2 49.359 156 62 5 17 161 29 178 1.21e-44 157
Msa0553120 AT1G34180.1 44.000 175 88 3 13 185 14 180 1.84e-44 159
Msa0553120 AT4G17980.1 50.000 154 67 4 17 161 8 160 2.81e-44 152
Msa0553120 AT5G08790.1 39.713 209 107 6 13 210 4 204 2.99e-44 152
Msa0553120 AT1G61110.1 43.478 184 84 3 17 182 18 199 4.19e-44 153
Msa0553120 AT4G17980.2 50.000 154 67 4 17 161 8 160 5.02e-44 152
Msa0553120 AT1G65910.1 43.548 186 90 5 17 194 8 186 6.35e-44 159
Msa0553120 AT3G04070.2 46.584 161 70 3 17 162 12 171 7.30e-44 153
Msa0553120 AT1G34190.1 44.000 175 88 3 13 185 14 180 9.18e-44 157
Msa0553120 AT5G46590.1 50.327 153 66 3 17 161 8 158 1.19e-43 151
Msa0553120 AT5G61430.1 46.626 163 76 4 12 166 12 171 1.70e-43 152
Msa0553120 AT3G03200.1 43.158 190 93 4 17 198 8 190 2.39e-43 155
Msa0553120 AT3G15500.1 47.500 160 75 3 13 166 11 167 2.87e-43 150
Msa0553120 AT5G62380.2 48.344 151 69 3 17 161 9 156 3.27e-43 151
Msa0553120 AT5G62380.1 48.344 151 69 3 17 161 9 156 3.27e-43 151
Msa0553120 AT4G27410.3 46.857 175 67 6 13 164 11 182 4.13e-43 150
Msa0553120 AT1G33060.1 43.350 203 95 5 9 198 12 207 5.70e-43 156
Msa0553120 AT1G33060.2 43.350 203 95 5 9 198 12 207 6.58e-43 156
Msa0553120 AT4G36160.1 49.007 151 68 4 17 161 12 159 8.16e-43 151
Msa0553120 AT4G36160.3 49.007 151 68 4 17 161 12 159 8.16e-43 151
Msa0553120 AT5G46590.2 54.545 132 56 2 17 146 8 137 8.41e-43 149
Msa0553120 AT4G36160.2 49.007 151 68 4 17 161 16 163 8.87e-43 151
Msa0553120 AT2G18060.3 43.713 167 82 4 4 164 1 161 1.19e-42 150
Msa0553120 AT2G18060.1 43.713 167 82 4 4 164 1 161 1.19e-42 150
Msa0553120 AT3G10500.1 47.097 155 72 4 17 164 11 162 1.74e-42 154
Msa0553120 AT3G15510.1 41.667 168 81 2 19 170 21 187 2.94e-42 149
Msa0553120 AT5G39610.1 48.101 158 71 4 12 161 16 170 3.56e-42 147
Msa0553120 AT5G63790.1 40.000 205 103 5 13 206 47 242 3.65e-42 147
Msa0553120 AT1G34180.4 40.107 187 90 3 13 185 14 192 4.06e-42 151
Msa0553120 AT5G63790.2 40.000 205 103 5 13 206 57 252 4.48e-42 148
Msa0553120 AT1G52890.1 46.250 160 77 3 13 166 11 167 5.77e-42 147
Msa0553120 AT1G33280.1 46.154 156 76 3 17 167 10 162 8.53e-42 146
Msa0553120 AT4G10350.1 43.605 172 86 3 17 180 11 179 8.64e-42 147
Msa0553120 AT2G46770.1 41.799 189 86 3 1 168 2 187 1.37e-41 147
Msa0553120 AT1G71930.2 45.695 151 73 3 17 161 11 158 1.78e-41 146
Msa0553120 AT1G71930.1 45.695 151 73 3 17 161 11 158 1.78e-41 146
Msa0553120 AT5G07680.1 46.012 163 77 4 12 166 13 172 1.81e-41 146
Msa0553120 AT5G17260.1 45.752 153 72 3 17 161 8 157 1.83e-41 149
Msa0553120 AT1G34180.2 40.107 187 90 3 13 185 14 192 2.17e-41 151
Msa0553120 AT2G24430.2 43.396 159 85 2 12 166 13 170 2.28e-41 145
Msa0553120 AT2G24430.1 43.396 159 85 2 12 166 13 170 2.28e-41 145
Msa0553120 AT3G15170.1 46.203 158 77 2 12 162 17 173 2.75e-41 145
Msa0553120 AT3G04070.1 42.373 177 70 3 17 162 12 187 2.76e-41 147
Msa0553120 AT5G07680.2 45.860 157 75 3 17 166 5 158 3.74e-41 145
Msa0553120 AT3G29035.1 52.239 134 60 2 11 143 19 149 5.68e-41 145
Msa0553120 AT3G18400.1 43.506 154 80 2 17 166 7 157 9.87e-41 144
Msa0553120 AT5G18270.2 46.053 152 73 3 17 161 23 172 1.63e-40 144
Msa0553120 AT3G10480.3 43.011 186 62 5 17 161 29 211 1.64e-40 148
Msa0553120 AT5G66300.1 44.231 156 77 3 17 165 14 166 2.34e-40 142
Msa0553120 AT5G18270.1 46.053 152 73 3 17 161 23 172 2.56e-40 143
Msa0553120 AT5G09330.5 47.368 152 70 4 17 161 8 156 2.64e-40 147
Msa0553120 AT5G09330.2 47.368 152 70 4 17 161 8 156 2.64e-40 147
Msa0553120 AT5G09330.4 47.368 152 70 4 17 161 8 156 2.64e-40 147
Msa0553120 AT5G09330.3 47.368 152 70 4 17 161 8 156 2.64e-40 147
Msa0553120 AT5G09330.1 47.368 152 70 4 17 161 8 156 2.64e-40 147
Msa0553120 AT1G76420.1 44.156 154 81 2 17 166 24 176 3.66e-40 143
Msa0553120 AT1G32770.1 44.706 170 71 5 17 167 18 183 4.38e-40 143
Msa0553120 AT5G53950.1 41.584 202 106 5 13 204 15 214 6.20e-40 143
Msa0553120 AT3G04060.1 46.053 152 73 3 17 161 22 171 1.16e-39 142
Msa0553120 AT5G64060.1 46.711 152 71 4 17 161 8 156 2.05e-39 142
Msa0553120 AT3G61910.1 41.753 194 94 6 17 200 13 197 2.06e-39 141
Msa0553120 AT1G52880.1 44.375 160 75 2 19 164 21 180 5.87e-39 139
Msa0553120 AT1G32510.1 46.386 166 76 4 17 169 8 173 6.39e-39 138
Msa0553120 AT3G44350.2 40.206 194 97 7 18 198 8 195 9.65e-39 137
Msa0553120 AT1G79580.3 48.387 155 73 3 17 166 19 171 1.04e-38 140
Msa0553120 AT1G79580.5 48.387 155 73 3 17 166 19 171 1.04e-38 140
Msa0553120 AT1G79580.4 48.387 155 73 3 17 166 19 171 1.04e-38 140
Msa0553120 AT1G79580.2 48.387 155 73 3 17 166 19 171 1.04e-38 140
Msa0553120 AT1G79580.1 48.387 155 73 3 17 166 19 171 1.04e-38 140
Msa0553120 AT5G22380.1 35.814 215 122 6 12 213 3 214 1.30e-38 136
Msa0553120 AT3G12910.1 41.379 174 82 4 12 166 18 190 4.80e-38 137
Msa0553120 AT4G35580.1 46.452 155 72 4 15 161 8 159 4.83e-38 141
Msa0553120 AT4G35580.3 46.452 155 72 4 15 161 8 159 5.98e-38 141
Msa0553120 AT4G35580.2 46.452 155 72 4 15 161 8 159 6.29e-38 141
Msa0553120 AT1G56010.2 45.513 156 73 5 17 163 21 173 1.17e-37 136
Msa0553120 AT5G24590.2 43.784 185 90 5 15 191 12 190 3.12e-37 138
Msa0553120 AT3G49530.2 42.222 180 93 5 15 186 12 188 5.29e-37 136
Msa0553120 AT5G04395.1 45.395 152 70 1 8 146 21 172 9.38e-37 130
Msa0553120 AT1G54330.1 46.309 149 73 3 17 161 8 153 9.84e-37 133
Msa0553120 AT3G12977.1 37.186 199 107 5 17 209 20 206 1.15e-36 132
Msa0553120 AT5G13180.1 47.651 149 70 3 17 161 16 160 1.22e-36 132
Msa0553120 AT3G49530.1 42.222 180 93 5 15 186 12 188 1.35e-36 136
Msa0553120 AT5G22290.1 38.220 191 108 4 15 199 21 207 4.13e-36 132
Msa0553120 AT2G33480.2 46.358 151 72 3 17 164 17 161 7.88e-36 130
Msa0553120 AT4G28530.1 42.169 166 72 5 17 162 12 173 8.66e-36 132
Msa0553120 AT2G33480.1 45.752 153 72 4 17 164 17 163 5.47e-35 128
Msa0553120 AT1G32870.2 49.045 157 66 4 17 164 12 163 5.73e-34 130
Msa0553120 AT1G32870.1 49.045 157 66 4 17 164 12 163 6.90e-34 130
Msa0553120 AT1G32870.3 49.045 157 66 4 17 164 48 199 1.06e-33 129
Msa0553120 AT3G44350.1 44.604 139 66 4 18 149 8 142 3.08e-33 120
Msa0553120 AT4G01550.1 44.444 153 76 4 16 162 5 154 4.42e-33 127
Msa0553120 AT2G27300.1 39.597 149 82 4 16 162 15 157 2.84e-32 122
Msa0553120 AT3G44290.2 40.816 147 81 3 15 160 14 155 9.81e-32 118
Msa0553120 AT3G44290.1 40.816 147 81 3 15 160 14 155 4.60e-31 119
Msa0553120 AT4G01520.1 38.961 154 90 3 18 167 7 160 6.55e-30 115
Msa0553120 AT1G56010.1 51.376 109 42 4 63 163 1 106 1.80e-29 113
Msa0553120 AT5G61430.2 48.649 111 47 3 63 166 1 108 3.49e-29 112
Msa0553120 AT4G01540.3 39.103 156 91 3 16 167 5 160 1.62e-28 114
Msa0553120 AT4G01540.4 39.103 156 91 3 16 167 5 160 2.18e-28 113
Msa0553120 AT4G01540.2 39.103 156 91 3 16 167 5 160 2.88e-28 113
Msa0553120 AT4G01540.1 39.103 156 91 3 16 167 5 160 3.28e-28 113
Msa0553120 AT3G12977.2 38.158 152 76 5 64 209 14 153 1.03e-27 107
Msa0553120 AT4G10350.2 44.068 118 58 2 68 180 18 132 1.14e-27 109
Msa0553120 AT5G64530.1 35.088 171 88 4 17 177 5 162 1.66e-22 92.8
Msa0553120 AT2G33480.3 45.098 102 48 3 68 164 8 106 2.11e-22 93.2
Msa0553120 AT5G64530.2 39.535 129 65 3 17 145 5 120 2.74e-22 91.3
Msa0553120 AT1G02250.1 38.000 150 85 4 18 162 6 152 9.98e-22 94.4
Msa0553120 AT1G02230.1 33.533 167 99 5 18 177 6 167 2.29e-20 90.5
Msa0553120 AT3G04420.2 31.138 167 108 3 18 180 6 169 4.88e-19 85.5
Msa0553120 AT1G01010.1 34.706 170 92 7 18 174 6 169 9.46e-19 86.3
Msa0553120 AT3G04420.1 31.138 167 108 3 18 180 6 169 1.25e-18 85.1
Msa0553120 AT2G43000.2 44.792 96 44 3 77 166 2 94 3.76e-18 81.3
Msa0553120 AT4G28530.2 38.938 113 48 3 17 112 12 120 1.28e-17 82.0
Msa0553120 AT2G18060.2 47.297 74 33 2 94 164 3 73 8.97e-17 79.0
Msa0553120 AT3G04430.1 41.739 115 50 6 21 127 6 111 1.95e-16 76.6
Msa0553120 AT3G56530.1 34.395 157 93 5 10 159 46 199 6.08e-16 77.4
Msa0553120 AT1G02220.1 33.103 145 87 4 18 158 6 144 1.81e-15 76.6
Msa0553120 AT3G10490.4 46.988 83 29 4 88 161 2 78 2.09e-15 76.3
Msa0553120 AT3G10490.3 46.988 83 29 4 88 161 2 78 2.09e-15 76.3
Msa0553120 AT3G55210.1 31.928 166 95 6 17 167 13 175 2.46e-15 75.1
Msa0553120 AT5G14000.2 32.812 128 79 3 18 143 18 140 5.66e-15 71.6
Msa0553120 AT5G22290.2 36.036 111 62 3 94 199 2 108 5.75e-15 73.6
Msa0553120 AT5G14000.1 28.902 173 111 6 14 179 13 180 1.01e-14 72.0
Msa0553120 AT5G50820.1 31.217 189 105 7 17 197 19 190 2.36e-13 67.8

Find 105 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCAAACTGTTAAATT+TGG 0.154685 4_1:+49974798 Msa0553120:three_prime_UTR
TTGGGGTGGTCTTATGTTTA+AGG 0.160016 4_1:-49972313 None:intergenic
CTTGAAAAGACTTATTAATT+TGG 0.188712 4_1:-49972237 None:intergenic
CTTCGGTAGATAACAGAATT+TGG 0.202481 4_1:-49974825 None:intergenic
TCATGTTCAGATTCTTTCTT+AGG 0.221095 4_1:-49974240 None:intergenic
TGATTTCTATCTTAAGAATA+TGG 0.228122 4_1:+49972490 Msa0553120:CDS
GTCTTATGTTTAAGGTTGTT+TGG 0.248733 4_1:-49972305 None:intergenic
GTCTTGTTGTGTATAGTTAA+AGG 0.284889 4_1:-49974175 None:intergenic
TGACAATTCTACCCGGTTCT+TGG 0.286012 4_1:+49974665 Msa0553120:three_prime_UTR
TGATACAAGCTAAATTAATT+AGG 0.289576 4_1:+49974596 Msa0553120:three_prime_UTR
GAGAATATATTGATTATATA+TGG 0.296739 4_1:+49972385 Msa0553120:exon
GTTATGAGAGTGTATTTATA+AGG 0.300985 4_1:-49972203 None:intergenic
GCACAACTGAGAAAGGTTTC+TGG 0.301891 4_1:+49972804 Msa0553120:CDS
AATGACTTGTTGGAACAATA+AGG 0.302791 4_1:-49974217 None:intergenic
ATTGGACCCAAGATACGTTT+TGG 0.309560 4_1:+49974403 Msa0553120:CDS
AATAATTAAAACTGAAGATA+TGG 0.309992 4_1:+49974263 Msa0553120:CDS
GAAATCCAAATTTAACAGTT+TGG 0.311730 4_1:-49974803 None:intergenic
ACTGAACAAATTACACTTCC+AGG 0.347917 4_1:+49972434 Msa0553120:CDS
ATAGTCCTTGGCTACAAAAC+TGG 0.348323 4_1:+49974436 Msa0553120:CDS
TTTAGCTATATAATGTTGTT+GGG 0.353592 4_1:-49972331 None:intergenic
CTTTCTTAGGAATGACTTGT+TGG 0.365533 4_1:-49974227 None:intergenic
TCGGATCCTAAACGCATAAT+CGG 0.374560 4_1:+49972863 Msa0553120:CDS
GCTGAGCCCAAAACGTATCT+TGG 0.377260 4_1:-49974410 None:intergenic
CTCAACCCGATTATGCGTTT+AGG 0.377361 4_1:-49972869 None:intergenic
TATATAGGTTTGTCAAAGGT+TGG 0.383447 4_1:+49972716 Msa0553120:intron
GAAGAAGGTGGGGAAGATGT+AGG 0.386986 4_1:-49974135 None:intergenic
AAGAAGGTGGGGAAGATGTA+GGG 0.391402 4_1:-49974134 None:intergenic
AAACTTCGTTATGATGTCAT+TGG 0.391717 4_1:+49972524 Msa0553120:CDS
ATATTATATCATCCAAGAAC+CGG 0.392175 4_1:-49974677 None:intergenic
TCTTATGTTTAAGGTTGTTT+GGG 0.392186 4_1:-49972304 None:intergenic
ATATAGGTTTGTCAAAGGTT+GGG 0.396654 4_1:+49972717 Msa0553120:intron
ACATCTTTGCAATTGCCCTT+AGG 0.396815 4_1:+49974339 Msa0553120:CDS
CATCTTTGCAATTGCCCTTA+GGG 0.400405 4_1:+49974340 Msa0553120:CDS
GGGCTCAGCTTAATAGTCCT+TGG 0.407233 4_1:+49974424 Msa0553120:CDS
CAAGAGGAACCAAGACTGAT+TGG 0.409549 4_1:+49972924 Msa0553120:CDS
CAATCAGTCTTGGTTCCTCT+TGG 0.413050 4_1:-49972923 None:intergenic
TATCTTAAGAATATGGTTGT+TGG 0.419156 4_1:+49972497 Msa0553120:CDS
TTTATAAGGAATGGTTGGTT+TGG 0.424643 4_1:-49972189 None:intergenic
TCTTTGTTCAAGCACTTTCA+AGG 0.428200 4_1:-49974073 None:intergenic
TTGATTATATATGGCATCAA+TGG 0.441959 4_1:+49972394 Msa0553120:exon
TATAGGTTTGTCAAAGGTTG+GGG 0.462857 4_1:+49972718 Msa0553120:intron
AGTTACCTATAGCTGCAGAT+TGG 0.469574 4_1:+49974385 Msa0553120:CDS
CGGATCCTAAACGCATAATC+GGG 0.473596 4_1:+49972864 Msa0553120:CDS
TTAGGCAAGGGGCTATTGTC+AGG 0.479868 4_1:-49972968 None:intergenic
CTGAGCCCAAAACGTATCTT+GGG 0.483158 4_1:-49974409 None:intergenic
CCTTTCTCAGTTGTGCGGTT+AGG 0.486073 4_1:-49972797 None:intergenic
ATTCATAACCCAATCAGTCT+TGG 0.489277 4_1:-49972933 None:intergenic
CACGTTGGCTATAAAAGTCT+TGG 0.489288 4_1:+49974752 Msa0553120:three_prime_UTR
GTGGGGTGAAATCTGAATCC+TGG 0.490756 4_1:-49972452 None:intergenic
TTCCCCACCTTCTTCCTCTA+CGG 0.492417 4_1:+49974143 Msa0553120:CDS
GCTATATAATGTTGTTGGGG+TGG 0.495521 4_1:-49972327 None:intergenic
AGAAGAAGAGATGAAACAAA+TGG 0.498288 4_1:+49974104 Msa0553120:CDS
TGGGTCCAATCTGCAGCTAT+AGG 0.498639 4_1:-49974390 None:intergenic
TCAAGGAGTTCTTCTTCTGT+GGG 0.500082 4_1:-49972470 None:intergenic
CCTAACCGCACAACTGAGAA+AGG 0.502041 4_1:+49972797 Msa0553120:CDS
AGGTACATTGTCCTTCCCTA+AGG 0.503391 4_1:-49974355 None:intergenic
ACAAGCTAAATTAATTAGGC+AGG 0.504198 4_1:+49974600 Msa0553120:three_prime_UTR
CCGGAAAATCGTGACCTTGT+CGG 0.504388 4_1:+49972844 Msa0553120:CDS
GTTTAAGGTTGTTTGGGCAG+AGG 0.506348 4_1:-49972298 None:intergenic
AAGAGGAACCAAGACTGATT+GGG 0.506930 4_1:+49972925 Msa0553120:CDS
TATTCTTAAGATAGAAATCA+AGG 0.507383 4_1:-49972487 None:intergenic
CAAAGGTTGGGGAAAGAGAA+TGG 0.507736 4_1:+49972729 Msa0553120:CDS
ATGACTTGTTGGAACAATAA+GGG 0.510507 4_1:-49974216 None:intergenic
GAGAGTGTATTTATAAGGAA+TGG 0.511533 4_1:-49972198 None:intergenic
ATCAAGGAGTTCTTCTTCTG+TGG 0.511582 4_1:-49972471 None:intergenic
AGGGGCTATTGTCAGGTAAA+CGG 0.514663 4_1:-49972961 None:intergenic
CATGATCCTTGTGACTTGCC+AGG 0.515932 4_1:+49972566 Msa0553120:CDS
AGAAGGTGGGGAAGATGTAG+GGG 0.520080 4_1:-49974133 None:intergenic
TGACAATAGCCCCTTGCCTA+AGG 0.525791 4_1:+49972970 Msa0553120:CDS
TTAGCTATATAATGTTGTTG+GGG 0.526566 4_1:-49972330 None:intergenic
ATTATGCAAGATATATAGAA+AGG 0.533180 4_1:+49974044 Msa0553120:CDS
TTTCTGGAAAGCCACCGGTT+CGG 0.534834 4_1:+49972820 Msa0553120:CDS
CTGGCAAGTCACAAGGATCA+TGG 0.537753 4_1:-49972565 None:intergenic
GCTATAGGTAACTGAAGCTC+AGG 0.537889 4_1:-49974375 None:intergenic
AGGGCATGGACATGTGTTGT+TGG 0.543265 4_1:-49974197 None:intergenic
AGAAGAGATGAAACAAATGG+TGG 0.549954 4_1:+49974107 Msa0553120:CDS
GTGTATTTATAAGGAATGGT+TGG 0.550128 4_1:-49972194 None:intergenic
TTTGCAATTGCCCTTAGGGA+AGG 0.552390 4_1:+49974344 Msa0553120:CDS
GGAAAGCCACCGGTTCGGAC+CGG 0.552889 4_1:+49972825 Msa0553120:CDS
ATATACAATACCTTAGGCAA+GGG 0.556768 4_1:-49972980 None:intergenic
ATGATATATAGGTTTGTCAA+AGG 0.562913 4_1:+49972712 Msa0553120:intron
TATATACAATACCTTAGGCA+AGG 0.566468 4_1:-49972981 None:intergenic
AAAGGTTTCTGGAAAGCCAC+CGG 0.569247 4_1:+49972815 Msa0553120:CDS
ATTATATATGGCATCAATGG+AGG 0.593615 4_1:+49972397 Msa0553120:exon
GGTACATTGTCCTTCCCTAA+GGG 0.598633 4_1:-49974354 None:intergenic
CTAAACGCATAATCGGGTTG+AGG 0.600326 4_1:+49972870 Msa0553120:CDS
CTAAGCTATGAGTCACTATG+TGG 0.604065 4_1:-49972363 None:intergenic
GTCCGTAGAGGAAGAAGGTG+GGG 0.607988 4_1:-49974145 None:intergenic
AGGAACATAAAAGCTAGTGT+TGG 0.608902 4_1:-49972278 None:intergenic
GTGTCCGTAGAGGAAGAAGG+TGG 0.609803 4_1:-49974147 None:intergenic
AGAAACCTTTCTCAGTTGTG+CGG 0.614104 4_1:-49972802 None:intergenic
GAAGAGATGAAACAAATGGT+GGG 0.618089 4_1:+49974108 Msa0553120:CDS
TATTATATCATCCAAGAACC+GGG 0.622077 4_1:-49974676 None:intergenic
AATCGGGTTGAGGAAGACGT+TGG 0.622308 4_1:+49972880 Msa0553120:CDS
ATTGTGTCCGTAGAGGAAGA+AGG 0.636049 4_1:-49974150 None:intergenic
AATATACCTGGCAAGTCACA+AGG 0.637321 4_1:-49972572 None:intergenic
AAAGGAGATTGTGTCCGTAG+AGG 0.637647 4_1:-49974157 None:intergenic
TGTCCGTAGAGGAAGAAGGT+GGG 0.638792 4_1:-49974146 None:intergenic
TTGTTGGAACAATAAGGGCA+TGG 0.638825 4_1:-49974211 None:intergenic
GTTAGATTAGTTGTTCACGT+TGG 0.651064 4_1:+49974737 Msa0553120:three_prime_UTR
TATACAATACCTTAGGCAAG+GGG 0.661978 4_1:-49972979 None:intergenic
CAAGGAGTTCTTCTTCTGTG+GGG 0.678001 4_1:-49972469 None:intergenic
TGAAACTTGACAATTCTACC+CGG 0.714860 4_1:+49974658 Msa0553120:three_prime_UTR
TATGCGTTTAGGATCCGACA+AGG 0.717131 4_1:-49972858 None:intergenic
TATGAGGGAAGAGCTCCAAG+AGG 0.740807 4_1:+49972908 Msa0553120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAATTGAATGA+GGG - chr4_1:49973218-49973237 None:intergenic 10.0%
!!! ATTTTTTTTTAAATTGAATG+AGG - chr4_1:49973219-49973238 None:intergenic 10.0%
!! AAAATACTAATAATATACTA+TGG + chr4_1:49973999-49974018 Msa0553120:intron 10.0%
!!! GAGAATATATTGATTATATA+TGG + chr4_1:49972385-49972404 Msa0553120:exon 15.0%
!! TTCAAATTAAATTAATGTCT+TGG - chr4_1:49972643-49972662 None:intergenic 15.0%
!! ATTTAAAAAAAAATATGGGA+AGG + chr4_1:49973225-49973244 Msa0553120:intron 15.0%
!! CTATATATATAATTGAATGA+AGG - chr4_1:49973569-49973588 None:intergenic 15.0%
!!! TTTTTTACTTTTTTTACAAG+AGG + chr4_1:49973672-49973691 Msa0553120:intron 15.0%
!!! TTTTTACTTTTTTTACAAGA+GGG + chr4_1:49973673-49973692 Msa0553120:intron 15.0%
!! TGTTTATATTAGTCATAAAT+TGG + chr4_1:49973700-49973719 Msa0553120:intron 15.0%
!! AATAATTAAAACTGAAGATA+TGG + chr4_1:49974263-49974282 Msa0553120:CDS 15.0%
!! CTTGAAAAGACTTATTAATT+TGG - chr4_1:49972240-49972259 None:intergenic 20.0%
!! TTTAGCTATATAATGTTGTT+GGG - chr4_1:49972334-49972353 None:intergenic 20.0%
!!! TTTTAGCTATATAATGTTGT+TGG - chr4_1:49972335-49972354 None:intergenic 20.0%
!! TATTCTTAAGATAGAAATCA+AGG - chr4_1:49972490-49972509 None:intergenic 20.0%
!! TGATTTCTATCTTAAGAATA+TGG + chr4_1:49972490-49972509 Msa0553120:CDS 20.0%
!! AGATATATATACAATACCTT+AGG - chr4_1:49972989-49973008 None:intergenic 20.0%
!! ATTCATAGTTAAAGCTTATA+TGG - chr4_1:49973104-49973123 None:intergenic 20.0%
!! GATATATATCAAAATCACAT+GGG - chr4_1:49973154-49973173 None:intergenic 20.0%
!! TGATATATATCAAAATCACA+TGG - chr4_1:49973155-49973174 None:intergenic 20.0%
!!! TGTGATTTTGATATATATCA+CGG + chr4_1:49973155-49973174 Msa0553120:intron 20.0%
!! ATTATGCAAGATATATAGAA+AGG + chr4_1:49974044-49974063 Msa0553120:CDS 20.0%
!!! TTTTTAGTATCTGTTTACTT+TGG + chr4_1:49974528-49974547 Msa0553120:three_prime_UTR 20.0%
!! TGATACAAGCTAAATTAATT+AGG + chr4_1:49974596-49974615 Msa0553120:three_prime_UTR 20.0%
!! AAATCCAAAAACAACATTAA+AGG - chr4_1:49974783-49974802 None:intergenic 20.0%
!! GTTATGAGAGTGTATTTATA+AGG - chr4_1:49972206-49972225 None:intergenic 25.0%
!! TCTTATGTTTAAGGTTGTTT+GGG - chr4_1:49972307-49972326 None:intergenic 25.0%
! TTAGCTATATAATGTTGTTG+GGG - chr4_1:49972333-49972352 None:intergenic 25.0%
! TTGATTATATATGGCATCAA+TGG + chr4_1:49972394-49972413 Msa0553120:exon 25.0%
! TATCTTAAGAATATGGTTGT+TGG + chr4_1:49972497-49972516 Msa0553120:CDS 25.0%
! GTAACACATAATATGATACT+AGG - chr4_1:49972613-49972632 None:intergenic 25.0%
!! GAATGTTTTGCATGATATAT+AGG + chr4_1:49972701-49972720 Msa0553120:intron 25.0%
! ATGATATATAGGTTTGTCAA+AGG + chr4_1:49972712-49972731 Msa0553120:intron 25.0%
! CCAAAAATATACTACAGAAT+GGG - chr4_1:49973050-49973069 None:intergenic 25.0%
! ACCAAAAATATACTACAGAA+TGG - chr4_1:49973051-49973070 None:intergenic 25.0%
! AGTTAAAGCTTATATGGTTA+TGG - chr4_1:49973098-49973117 None:intergenic 25.0%
!!! GTGATTTTGATATATATCAC+GGG + chr4_1:49973156-49973175 Msa0553120:intron 25.0%
!! AGCTAGGAGTTAATTTTTAT+AGG + chr4_1:49973726-49973745 Msa0553120:intron 25.0%
! AAGAAACAAAAGGTTCATAA+GGG - chr4_1:49973856-49973875 None:intergenic 25.0%
! AAAGAAACAAAAGGTTCATA+AGG - chr4_1:49973857-49973876 None:intergenic 25.0%
! TTCATCATGAAAGAAACAAA+AGG - chr4_1:49973866-49973885 None:intergenic 25.0%
! AATTAGTTGCAAGTCTTAAT+TGG - chr4_1:49973892-49973911 None:intergenic 25.0%
! CAAACATAAACTAATGAAAC+TGG + chr4_1:49973938-49973957 Msa0553120:intron 25.0%
! AAAGATAACAAAAAAGCTTG+TGG + chr4_1:49974315-49974334 Msa0553120:CDS 25.0%
! ATATTATATCATCCAAGAAC+CGG - chr4_1:49974680-49974699 None:intergenic 25.0%
!!! GTATCCTTTAATGTTGTTTT+TGG + chr4_1:49974776-49974795 Msa0553120:three_prime_UTR 25.0%
! GATTTCCAAACTGTTAAATT+TGG + chr4_1:49974798-49974817 Msa0553120:three_prime_UTR 25.0%
! GAAATCCAAATTTAACAGTT+TGG - chr4_1:49974806-49974825 None:intergenic 25.0%
! TTTATAAGGAATGGTTGGTT+TGG - chr4_1:49972192-49972211 None:intergenic 30.0%
GTGTATTTATAAGGAATGGT+TGG - chr4_1:49972197-49972216 None:intergenic 30.0%
! GAGAGTGTATTTATAAGGAA+TGG - chr4_1:49972201-49972220 None:intergenic 30.0%
! GTCTTATGTTTAAGGTTGTT+TGG - chr4_1:49972308-49972327 None:intergenic 30.0%
ATTATATATGGCATCAATGG+AGG + chr4_1:49972397-49972416 Msa0553120:exon 30.0%
AAACTTCGTTATGATGTCAT+TGG + chr4_1:49972524-49972543 Msa0553120:CDS 30.0%
TGATTGATTAGCAATATACC+TGG - chr4_1:49972587-49972606 None:intergenic 30.0%
TATATAGGTTTGTCAAAGGT+TGG + chr4_1:49972716-49972735 Msa0553120:intron 30.0%
ATATAGGTTTGTCAAAGGTT+GGG + chr4_1:49972717-49972736 Msa0553120:intron 30.0%
ATATACAATACCTTAGGCAA+GGG - chr4_1:49972983-49973002 None:intergenic 30.0%
TATATACAATACCTTAGGCA+AGG - chr4_1:49972984-49973003 None:intergenic 30.0%
! CCCATTCTGTAGTATATTTT+TGG + chr4_1:49973047-49973066 Msa0553120:intron 30.0%
TCAATTAGTCATCGTATGAT+AGG - chr4_1:49973075-49973094 None:intergenic 30.0%
! AAAAGATTCCCCTGTTATTT+GGG - chr4_1:49973656-49973675 None:intergenic 30.0%
AAAAAGATTCCCCTGTTATT+TGG - chr4_1:49973657-49973676 None:intergenic 30.0%
TAATGTGCATATCTCTTACA+TGG + chr4_1:49973767-49973786 Msa0553120:intron 30.0%
AAATTTCCATGAAGATAGCT+AGG + chr4_1:49973795-49973814 Msa0553120:intron 30.0%
! TTCTTTCTGTACAAGTATTG+TGG + chr4_1:49973828-49973847 Msa0553120:intron 30.0%
AGAAACAAAAGGTTCATAAG+GGG - chr4_1:49973855-49973874 None:intergenic 30.0%
AGAAGAAGAGATGAAACAAA+TGG + chr4_1:49974104-49974123 Msa0553120:CDS 30.0%
! GTCTTGTTGTGTATAGTTAA+AGG - chr4_1:49974178-49974197 None:intergenic 30.0%
!! ATGACTTGTTGGAACAATAA+GGG - chr4_1:49974219-49974238 None:intergenic 30.0%
!! AATGACTTGTTGGAACAATA+AGG - chr4_1:49974220-49974239 None:intergenic 30.0%
TCATGTTCAGATTCTTTCTT+AGG - chr4_1:49974243-49974262 None:intergenic 30.0%
ACAAGCTAAATTAATTAGGC+AGG + chr4_1:49974600-49974619 Msa0553120:three_prime_UTR 30.0%
TATTATATCATCCAAGAACC+GGG - chr4_1:49974679-49974698 None:intergenic 30.0%
AGGAACATAAAAGCTAGTGT+TGG - chr4_1:49972281-49972300 None:intergenic 35.0%
ACTGAACAAATTACACTTCC+AGG + chr4_1:49972434-49972453 Msa0553120:CDS 35.0%
TATAGGTTTGTCAAAGGTTG+GGG + chr4_1:49972718-49972737 Msa0553120:intron 35.0%
!!! AATGGTATTTTTTCGTGCCA+AGG + chr4_1:49972747-49972766 Msa0553120:CDS 35.0%
!!! ATGGTATTTTTTCGTGCCAA+GGG + chr4_1:49972748-49972767 Msa0553120:CDS 35.0%
!!! AAGACGTTGGTTTTCTATGA+GGG + chr4_1:49972893-49972912 Msa0553120:CDS 35.0%
ATTCATAACCCAATCAGTCT+TGG - chr4_1:49972936-49972955 None:intergenic 35.0%
TATACAATACCTTAGGCAAG+GGG - chr4_1:49972982-49973001 None:intergenic 35.0%
TTTCACTTGAAATCGAACTC+AGG - chr4_1:49973406-49973425 None:intergenic 35.0%
! GATGATATGCTTGCTTGTTA+TGG + chr4_1:49973621-49973640 Msa0553120:intron 35.0%
!! AGTCATAAATTGGACTAGCT+AGG + chr4_1:49973710-49973729 Msa0553120:intron 35.0%
TGCATATCTCTTACATGGAA+GGG + chr4_1:49973772-49973791 Msa0553120:intron 35.0%
TACTATGGTACGTATTTGAC+AGG + chr4_1:49974014-49974033 Msa0553120:intron 35.0%
TCTTTGTTCAAGCACTTTCA+AGG - chr4_1:49974076-49974095 None:intergenic 35.0%
AGAAGAGATGAAACAAATGG+TGG + chr4_1:49974107-49974126 Msa0553120:CDS 35.0%
GAAGAGATGAAACAAATGGT+GGG + chr4_1:49974108-49974127 Msa0553120:CDS 35.0%
! CTTTCTTAGGAATGACTTGT+TGG - chr4_1:49974230-49974249 None:intergenic 35.0%
TGAAACTTGACAATTCTACC+CGG + chr4_1:49974658-49974677 Msa0553120:three_prime_UTR 35.0%
! GTTAGATTAGTTGTTCACGT+TGG + chr4_1:49974737-49974756 Msa0553120:three_prime_UTR 35.0%
!! TTGGGGTGGTCTTATGTTTA+AGG - chr4_1:49972316-49972335 None:intergenic 40.0%
GCTATATAATGTTGTTGGGG+TGG - chr4_1:49972330-49972349 None:intergenic 40.0%
CTAAGCTATGAGTCACTATG+TGG - chr4_1:49972366-49972385 None:intergenic 40.0%
TCAAGGAGTTCTTCTTCTGT+GGG - chr4_1:49972473-49972492 None:intergenic 40.0%
ATCAAGGAGTTCTTCTTCTG+TGG - chr4_1:49972474-49972493 None:intergenic 40.0%
AATATACCTGGCAAGTCACA+AGG - chr4_1:49972575-49972594 None:intergenic 40.0%
!!! CTACCATGTTTTTTGTCCCT+TGG - chr4_1:49972767-49972786 None:intergenic 40.0%
AGGGACAAAAAACATGGTAG+TGG + chr4_1:49972767-49972786 Msa0553120:CDS 40.0%
!! GACAAAAAACATGGTAGTGG+AGG + chr4_1:49972770-49972789 Msa0553120:CDS 40.0%
!! AAAAACATGGTAGTGGAGGA+AGG + chr4_1:49972774-49972793 Msa0553120:CDS 40.0%
AGAAACCTTTCTCAGTTGTG+CGG - chr4_1:49972805-49972824 None:intergenic 40.0%
TCGGATCCTAAACGCATAAT+CGG + chr4_1:49972863-49972882 Msa0553120:CDS 40.0%
!!! GAAGACGTTGGTTTTCTATG+AGG + chr4_1:49972892-49972911 Msa0553120:CDS 40.0%
AAGAGGAACCAAGACTGATT+GGG + chr4_1:49972925-49972944 Msa0553120:CDS 40.0%
ACCAAGTGATTGAACTCAAG+TGG + chr4_1:49973343-49973362 Msa0553120:intron 40.0%
ACCACTTGAGTTCAATCACT+TGG - chr4_1:49973347-49973366 None:intergenic 40.0%
TACCGAACACCAGATTACTA+GGG + chr4_1:49973457-49973476 Msa0553120:intron 40.0%
CCAGATTCTCCCAAATAACA+GGG + chr4_1:49973644-49973663 Msa0553120:intron 40.0%
CAGATTCTCCCAAATAACAG+GGG + chr4_1:49973645-49973664 Msa0553120:intron 40.0%
GTGCATATCTCTTACATGGA+AGG + chr4_1:49973771-49973790 Msa0553120:intron 40.0%
TCACTACCTAGCTATCTTCA+TGG - chr4_1:49973804-49973823 None:intergenic 40.0%
TTGTTGGAACAATAAGGGCA+TGG - chr4_1:49974214-49974233 None:intergenic 40.0%
ACATCTTTGCAATTGCCCTT+AGG + chr4_1:49974339-49974358 Msa0553120:CDS 40.0%
CATCTTTGCAATTGCCCTTA+GGG + chr4_1:49974340-49974359 Msa0553120:CDS 40.0%
AGTTACCTATAGCTGCAGAT+TGG + chr4_1:49974385-49974404 Msa0553120:CDS 40.0%
! ATTGGACCCAAGATACGTTT+TGG + chr4_1:49974403-49974422 Msa0553120:CDS 40.0%
! TTGGACCCAAGATACGTTTT+GGG + chr4_1:49974404-49974423 Msa0553120:CDS 40.0%
ATAGTCCTTGGCTACAAAAC+TGG + chr4_1:49974436-49974455 Msa0553120:CDS 40.0%
! CACGTTGGCTATAAAAGTCT+TGG + chr4_1:49974752-49974771 Msa0553120:three_prime_UTR 40.0%
! GTTTAAGGTTGTTTGGGCAG+AGG - chr4_1:49972301-49972320 None:intergenic 45.0%
CAAGGAGTTCTTCTTCTGTG+GGG - chr4_1:49972472-49972491 None:intergenic 45.0%
CAAAGGTTGGGGAAAGAGAA+TGG + chr4_1:49972729-49972748 Msa0553120:CDS 45.0%
GTGCCAAGGGACAAAAAACA+TGG + chr4_1:49972761-49972780 Msa0553120:CDS 45.0%
GCACAACTGAGAAAGGTTTC+TGG + chr4_1:49972804-49972823 Msa0553120:CDS 45.0%
! AAAGGTTTCTGGAAAGCCAC+CGG + chr4_1:49972815-49972834 Msa0553120:CDS 45.0%
! TATGCGTTTAGGATCCGACA+AGG - chr4_1:49972861-49972880 None:intergenic 45.0%
CGGATCCTAAACGCATAATC+GGG + chr4_1:49972864-49972883 Msa0553120:CDS 45.0%
CTCAACCCGATTATGCGTTT+AGG - chr4_1:49972872-49972891 None:intergenic 45.0%
! CTAAACGCATAATCGGGTTG+AGG + chr4_1:49972870-49972889 Msa0553120:CDS 45.0%
CAATCAGTCTTGGTTCCTCT+TGG - chr4_1:49972926-49972945 None:intergenic 45.0%
CAAGAGGAACCAAGACTGAT+TGG + chr4_1:49972924-49972943 Msa0553120:CDS 45.0%
AGGGGCTATTGTCAGGTAAA+CGG - chr4_1:49972964-49972983 None:intergenic 45.0%
TAATCTGGTGTTCGGTAGAG+AGG - chr4_1:49973454-49973473 None:intergenic 45.0%
CTACCGAACACCAGATTACT+AGG + chr4_1:49973456-49973475 Msa0553120:intron 45.0%
GACCCTAGTAATCTGGTGTT+CGG - chr4_1:49973462-49973481 None:intergenic 45.0%
GGAAAGAGACCCTAGTAATC+TGG - chr4_1:49973469-49973488 None:intergenic 45.0%
GCCAGATTCTCCCAAATAAC+AGG + chr4_1:49973643-49973662 Msa0553120:intron 45.0%
! CCCTGTTATTTGGGAGAATC+TGG - chr4_1:49973647-49973666 None:intergenic 45.0%
AAGAAGGTGGGGAAGATGTA+GGG - chr4_1:49974137-49974156 None:intergenic 45.0%
ATTGTGTCCGTAGAGGAAGA+AGG - chr4_1:49974153-49974172 None:intergenic 45.0%
AAAGGAGATTGTGTCCGTAG+AGG - chr4_1:49974160-49974179 None:intergenic 45.0%
TTTGCAATTGCCCTTAGGGA+AGG + chr4_1:49974344-49974363 Msa0553120:CDS 45.0%
GGTACATTGTCCTTCCCTAA+GGG - chr4_1:49974357-49974376 None:intergenic 45.0%
AGGTACATTGTCCTTCCCTA+AGG - chr4_1:49974358-49974377 None:intergenic 45.0%
GCTATAGGTAACTGAAGCTC+AGG - chr4_1:49974378-49974397 None:intergenic 45.0%
CTGAGCCCAAAACGTATCTT+GGG - chr4_1:49974412-49974431 None:intergenic 45.0%
TGACAATTCTACCCGGTTCT+TGG + chr4_1:49974665-49974684 Msa0553120:three_prime_UTR 45.0%
!! ATTCAATTTAAAAAAAAATA+TGG + chr4_1:49973220-49973239 Msa0553120:intron 5.0%
!! TTCAATTTAAAAAAAAATAT+GGG + chr4_1:49973221-49973240 Msa0553120:intron 5.0%
!! TAATTAAAAATTCAAAATAT+TGG - chr4_1:49974472-49974491 None:intergenic 5.0%
GTGGGGTGAAATCTGAATCC+TGG - chr4_1:49972455-49972474 None:intergenic 50.0%
CTGGCAAGTCACAAGGATCA+TGG - chr4_1:49972568-49972587 None:intergenic 50.0%
! CATGATCCTTGTGACTTGCC+AGG + chr4_1:49972566-49972585 Msa0553120:CDS 50.0%
CCTTTCTCAGTTGTGCGGTT+AGG - chr4_1:49972800-49972819 None:intergenic 50.0%
CCTAACCGCACAACTGAGAA+AGG + chr4_1:49972797-49972816 Msa0553120:CDS 50.0%
! TTTCTGGAAAGCCACCGGTT+CGG + chr4_1:49972820-49972839 Msa0553120:CDS 50.0%
! CCGACAAGGTCACGATTTTC+CGG - chr4_1:49972847-49972866 None:intergenic 50.0%
CCGGAAAATCGTGACCTTGT+CGG + chr4_1:49972844-49972863 Msa0553120:CDS 50.0%
!! AATCGGGTTGAGGAAGACGT+TGG + chr4_1:49972880-49972899 Msa0553120:CDS 50.0%
TATGAGGGAAGAGCTCCAAG+AGG + chr4_1:49972908-49972927 Msa0553120:CDS 50.0%
TTAGGCAAGGGGCTATTGTC+AGG - chr4_1:49972971-49972990 None:intergenic 50.0%
TGACAATAGCCCCTTGCCTA+AGG + chr4_1:49972970-49972989 Msa0553120:CDS 50.0%
TACTAGGGTCTCTTTCCCCT+AGG + chr4_1:49973472-49973491 Msa0553120:intron 50.0%
ATTACGAGTCCGGTTCCTAG+GGG - chr4_1:49973490-49973509 None:intergenic 50.0%
GATTACGAGTCCGGTTCCTA+GGG - chr4_1:49973491-49973510 None:intergenic 50.0%
CTAGGAACCGGACTCGTAAT+CGG + chr4_1:49973490-49973509 Msa0553120:intron 50.0%
TAGGAACCGGACTCGTAATC+GGG + chr4_1:49973491-49973510 Msa0553120:intron 50.0%
AGAAGGTGGGGAAGATGTAG+GGG - chr4_1:49974136-49974155 None:intergenic 50.0%
GAAGAAGGTGGGGAAGATGT+AGG - chr4_1:49974138-49974157 None:intergenic 50.0%
TTCCCCACCTTCTTCCTCTA+CGG + chr4_1:49974143-49974162 Msa0553120:CDS 50.0%
TGTCCGTAGAGGAAGAAGGT+GGG - chr4_1:49974149-49974168 None:intergenic 50.0%
AGGGCATGGACATGTGTTGT+TGG - chr4_1:49974200-49974219 None:intergenic 50.0%
TGGGTCCAATCTGCAGCTAT+AGG - chr4_1:49974393-49974412 None:intergenic 50.0%
GCTGAGCCCAAAACGTATCT+TGG - chr4_1:49974413-49974432 None:intergenic 50.0%
GGGCTCAGCTTAATAGTCCT+TGG + chr4_1:49974424-49974443 Msa0553120:CDS 50.0%
!! GCACTCCAGTTTTGTAGCCA+AGG - chr4_1:49974444-49974463 None:intergenic 50.0%
! CACGATTTTCCGGTCCGAAC+CGG - chr4_1:49972837-49972856 None:intergenic 55.0%
GGTCTCTTTCCCCTAGGAAC+CGG + chr4_1:49973478-49973497 Msa0553120:intron 55.0%
CGATTACGAGTCCGGTTCCT+AGG - chr4_1:49973492-49973511 None:intergenic 55.0%
AACCGGACTCGTAATCGGGA+GGG + chr4_1:49973495-49973514 Msa0553120:intron 55.0%
AACCCTCCCGATTACGAGTC+CGG - chr4_1:49973500-49973519 None:intergenic 55.0%
GTCCGTAGAGGAAGAAGGTG+GGG - chr4_1:49974148-49974167 None:intergenic 55.0%
GTGTCCGTAGAGGAAGAAGG+TGG - chr4_1:49974150-49974169 None:intergenic 55.0%
! GATTTTCCGGTCCGAACCGG+TGG - chr4_1:49972834-49972853 None:intergenic 60.0%
GAACCGGACTCGTAATCGGG+AGG + chr4_1:49973494-49973513 Msa0553120:intron 60.0%
!! GGAAAGCCACCGGTTCGGAC+CGG + chr4_1:49972825-49972844 Msa0553120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49972189 49974838 49972189 ID=Msa0553120;Name=Msa0553120
chr4_1 mRNA 49972189 49974838 49972189 ID=Msa0553120-mRNA-1;Parent=Msa0553120;Name=Msa0553120-mRNA-1;_AED=0.14;_eAED=0.14;_QI=215|1|1|1|1|1|3|350|301
chr4_1 exon 49972189 49972587 49972189 ID=Msa0553120-mRNA-1:exon:14094;Parent=Msa0553120-mRNA-1
chr4_1 exon 49972723 49972991 49972723 ID=Msa0553120-mRNA-1:exon:14095;Parent=Msa0553120-mRNA-1
chr4_1 exon 49974036 49974838 49974036 ID=Msa0553120-mRNA-1:exon:14096;Parent=Msa0553120-mRNA-1
chr4_1 five_prime_UTR 49972189 49972403 49972189 ID=Msa0553120-mRNA-1:five_prime_utr;Parent=Msa0553120-mRNA-1
chr4_1 CDS 49972404 49972587 49972404 ID=Msa0553120-mRNA-1:cds;Parent=Msa0553120-mRNA-1
chr4_1 CDS 49972723 49972991 49972723 ID=Msa0553120-mRNA-1:cds;Parent=Msa0553120-mRNA-1
chr4_1 CDS 49974036 49974488 49974036 ID=Msa0553120-mRNA-1:cds;Parent=Msa0553120-mRNA-1
chr4_1 three_prime_UTR 49974489 49974838 49974489 ID=Msa0553120-mRNA-1:three_prime_utr;Parent=Msa0553120-mRNA-1
Gene Sequence

>Msa0553120

ATGGCATCAATGGAGGACATCAACATGTGTACTGAACAAATTACACTTCCAGGATTCAGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAGAATATGGTTGTTGGCAAAAAACTTCGTTATGATGTCATTGGTTTTCTAAATATCTATCACCATGATCCTTGTGACTTGCCAGGTTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTTTTCGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAGAAAGGTTTCTGGAAAGCCACCGGTTCGGACCGGAAAATCGTGACCTTGTCGGATCCTAAACGCATAATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCAAGAGGAACCAAGACTGATTGGGTTATGAATGAATACCGTTTACCTGACAATAGCCCCTTGCCTAAGGACATAGTATTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGCTTGAACAAAGAGCAGCAGAAGAAGAAGAGATGAAACAAATGGTGGGTTCCCCTACATCTTCCCCACCTTCTTCCTCTACGGACACAATCTCCTTTAACTATACACAACAAGACCAACAACACATGTCCATGCCCTTATTGTTCCAACAAGTCATTCCTAAGAAAGAATCTGAACATGAAATAATTAAAACTGAAGATATGGTTTCTTTGTCAAGTCATGAAAAAATTGTGAAAGATAACAAAAAAGCTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCTGAGCTTCAGTTACCTATAGCTGCAGATTGGACCCAAGATACGTTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAACTGGAGTGCTTACACCAATATTTTGAATTTTTAA
Protein sequence

>Msa0553120

MASMEDINMCTEQITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMVGSPTSSPPSSSTDTISFNYTQQDQQHMSMPLLFQQVIPKKESEHEIIKTEDMVSLSSHEKIVKDNKKACGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWSAYTNILNF*