AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607180 MtrunA17_Chr4g0038751 97.667 300 6 1 1 300 1 299 0.0 609
Msa0607180 MtrunA17_Chr4g0076731 53.947 152 65 2 14 162 53 202 2.79e-56 187
Msa0607180 MtrunA17_Chr8g0361731 45.771 201 89 5 4 188 1 197 1.42e-53 179
Msa0607180 MtrunA17_Chr6g0453131 46.231 199 88 5 16 199 16 210 5.05e-53 178
Msa0607180 MtrunA17_Chr5g0417001 43.684 190 90 3 12 188 11 196 5.17e-50 170
Msa0607180 MtrunA17_Chr2g0326361 39.485 233 119 4 17 237 16 238 1.18e-48 164
Msa0607180 MtrunA17_Chr5g0398971 42.289 201 104 5 17 207 9 207 9.09e-48 163
Msa0607180 MtrunA17_Chr2g0318101 40.476 210 103 5 6 198 5 209 1.58e-47 162
Msa0607180 MtrunA17_Chr7g0252971 43.750 192 88 4 9 180 1 192 4.61e-47 161
Msa0607180 MtrunA17_Chr5g0442771 37.339 233 123 4 12 221 15 247 5.34e-47 160
Msa0607180 MtrunA17_Chr3g0124761 46.386 166 77 3 9 166 1 162 1.63e-46 158
Msa0607180 MtrunA17_Chr4g0018391 36.323 223 113 6 17 213 9 228 2.37e-45 156
Msa0607180 MtrunA17_Chr5g0417791 48.148 162 72 2 17 169 5 163 2.86e-45 154
Msa0607180 MtrunA17_Chr1g0201021 40.306 196 107 3 15 208 19 206 3.67e-45 160
Msa0607180 MtrunA17_Chr5g0400461 40.000 215 112 5 17 219 8 217 5.70e-45 155
Msa0607180 MtrunA17_Chr8g0359921 49.375 160 70 3 13 164 11 167 7.32e-45 155
Msa0607180 MtrunA17_Chr4g0042561 47.561 164 74 2 17 171 11 171 1.54e-44 152
Msa0607180 MtrunA17_Chr2g0318081 49.375 160 72 4 13 166 13 169 1.55e-44 154
Msa0607180 MtrunA17_Chr6g0481091 44.242 165 82 3 17 174 8 169 1.62e-44 151
Msa0607180 MtrunA17_Chr4g0056541 49.007 151 68 3 17 161 9 156 1.71e-44 155
Msa0607180 MtrunA17_Chr8g0364791 40.826 218 104 5 16 211 7 221 4.06e-44 155
Msa0607180 MtrunA17_Chr4g0047841 42.021 188 79 4 6 164 5 191 5.43e-44 153
Msa0607180 MtrunA17_Chr2g0309891 42.690 171 84 4 17 179 8 172 5.93e-44 153
Msa0607180 MtrunA17_Chr3g0091921 46.552 174 79 6 4 166 1 171 5.96e-44 152
Msa0607180 MtrunA17_Chr8g0372121 46.296 162 78 4 12 167 3 161 8.78e-44 151
Msa0607180 MtrunA17_Chr4g0017921 46.471 170 83 4 17 181 10 176 9.55e-44 152
Msa0607180 MtrunA17_Chr5g0405211 45.283 159 78 3 12 164 5 160 1.10e-43 152
Msa0607180 MtrunA17_Chr3g0109821 43.407 182 90 4 17 188 8 186 1.12e-43 158
Msa0607180 MtrunA17_Chr4g0060931 44.000 175 83 5 4 166 1 172 1.12e-43 152
Msa0607180 MtrunA17_Chr7g0263931 40.488 205 108 4 6 210 2 192 5.51e-43 150
Msa0607180 MtrunA17_Chr3g0130101 45.000 160 78 3 9 161 1 157 8.25e-43 150
Msa0607180 MtrunA17_Chr8g0346001 45.714 175 75 4 17 174 17 188 1.32e-42 151
Msa0607180 MtrunA17_Chr2g0311661 38.696 230 109 6 1 204 1 224 1.41e-42 148
Msa0607180 MtrunA17_Chr2g0309331 46.707 167 81 5 17 177 12 176 1.93e-42 149
Msa0607180 MtrunA17_Chr7g0266701 43.605 172 77 6 17 171 6 174 2.00e-42 146
Msa0607180 MtrunA17_Chr5g0433781 46.154 156 74 4 17 165 8 160 2.07e-42 154
Msa0607180 MtrunA17_Chr6g0484441 41.463 164 90 2 17 177 7 167 3.88e-42 147
Msa0607180 MtrunA17_Chr3g0130731 44.304 158 76 2 17 166 9 162 4.02e-42 147
Msa0607180 MtrunA17_Chr3g0139331 45.570 158 82 2 12 166 8 164 7.24e-42 147
Msa0607180 MtrunA17_Chr4g0054791 43.956 182 95 3 17 191 8 189 7.85e-42 147
Msa0607180 MtrunA17_Chr1g0200561 45.963 161 78 3 9 163 13 170 9.67e-42 147
Msa0607180 MtrunA17_Chr2g0311651 42.328 189 84 5 1 164 1 189 1.40e-41 145
Msa0607180 MtrunA17_Chr6g0453451 44.375 160 79 2 17 169 22 178 2.14e-41 145
Msa0607180 MtrunA17_Chr6g0461661 39.320 206 109 5 7 197 9 213 2.03e-40 144
Msa0607180 MtrunA17_Chr1g0147421 44.025 159 84 3 12 166 24 181 2.75e-40 144
Msa0607180 MtrunA17_Chr8g0384721 44.654 159 75 4 17 166 9 163 3.14e-40 141
Msa0607180 MtrunA17_Chr8g0384201 48.366 153 69 3 16 161 7 156 3.51e-40 146
Msa0607180 MtrunA17_Chr2g0316971 51.969 127 60 1 17 143 25 150 3.91e-40 144
Msa0607180 MtrunA17_Chr3g0144271 44.643 168 78 6 1 158 2 164 3.91e-40 145
Msa0607180 MtrunA17_Chr4g0026141 39.899 198 104 5 12 196 2 197 1.09e-39 139
Msa0607180 MtrunA17_Chr3g0092671 46.795 156 71 5 17 164 7 158 1.95e-39 145
Msa0607180 MtrunA17_Chr1g0197351 44.670 197 86 5 17 193 44 237 2.77e-39 143
Msa0607180 MtrunA17_Chr1g0197361 44.516 155 76 4 17 164 10 161 1.72e-38 142
Msa0607180 MtrunA17_Chr7g0253011 43.671 158 81 3 17 166 19 176 2.59e-38 139
Msa0607180 MtrunA17_Chr7g0214071 41.573 178 93 5 4 174 1 174 1.88e-37 133
Msa0607180 MtrunA17_Chr5g0428991 46.358 151 71 3 18 161 28 175 2.31e-37 140
Msa0607180 MtrunA17_Chr3g0128111 36.893 206 118 4 18 216 45 245 2.45e-37 133
Msa0607180 MtrunA17_Chr1g0183741 37.895 190 103 5 17 203 12 189 3.33e-37 133
Msa0607180 MtrunA17_Chr7g0217721 46.358 151 74 3 1 147 1 148 3.65e-37 135
Msa0607180 MtrunA17_Chr3g0128151 45.806 155 73 4 15 161 21 172 5.51e-37 139
Msa0607180 MtrunA17_Chr2g0312321 43.373 166 78 5 4 161 1 158 6.93e-37 133
Msa0607180 MtrunA17_Chr7g0261411 42.177 147 79 3 17 160 12 155 5.91e-36 130
Msa0607180 MtrunA17_Chr2g0321631 41.379 174 82 6 17 174 6 175 1.19e-35 129
Msa0607180 MtrunA17_Chr7g0217711 45.578 147 73 3 1 143 1 144 1.19e-35 126
Msa0607180 MtrunA17_Chr8g0385991 49.606 127 61 2 17 143 16 139 3.03e-34 124
Msa0607180 MtrunA17_Chr8g0345671 43.056 144 77 4 18 158 14 155 1.75e-30 118
Msa0607180 MtrunA17_Chr8g0345691 43.056 144 77 4 18 158 15 156 5.12e-30 117
Msa0607180 MtrunA17_Chr3g0131911 39.429 175 90 4 4 164 1 173 6.55e-30 113
Msa0607180 MtrunA17_Chr8g0345711 41.406 128 70 4 18 142 15 140 3.33e-26 101
Msa0607180 MtrunA17_Chr3g0113001 52.941 85 37 1 63 147 13 94 3.27e-25 102
Msa0607180 MtrunA17_Chr2g0321741 39.024 123 69 3 39 160 16 133 9.78e-25 102
Msa0607180 MtrunA17_Chr4g0050701 35.256 156 81 3 17 161 13 159 3.04e-23 94.4
Msa0607180 MtrunA17_Chr8g0345721 34.615 156 68 4 18 141 38 191 3.24e-22 92.4
Msa0607180 MtrunA17_Chr8g0345741 37.956 137 76 5 26 159 2 132 1.10e-21 89.4
Msa0607180 MtrunA17_Chr7g0243371 44.578 83 45 1 68 150 17 98 1.16e-21 88.2
Msa0607180 MtrunA17_Chr8g0345701 40.136 147 66 7 18 146 10 152 8.58e-21 87.4
Msa0607180 MtrunA17_Chr8g0345731 38.462 130 74 4 18 142 27 155 1.35e-20 87.0
Msa0607180 MtrunA17_Chr3g0113031 30.636 173 108 4 78 241 3 172 2.35e-17 80.1
Msa0607180 MtrunA17_Chr8g0384351 35.185 162 74 8 17 173 12 147 9.07e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607180 AT2G17040.1 60.140 286 96 7 14 297 5 274 4.79e-112 325
Msa0607180 AT2G02450.2 53.642 151 65 2 14 161 50 198 3.15e-57 189
Msa0607180 AT2G02450.1 53.642 151 65 2 14 161 50 198 3.22e-57 189
Msa0607180 AT5G39820.1 58.647 133 54 1 12 144 17 148 6.16e-53 176
Msa0607180 AT1G26870.1 44.393 214 90 6 12 209 13 213 1.32e-49 170
Msa0607180 AT1G62700.1 47.771 157 73 3 17 167 9 162 7.79e-48 164
Msa0607180 AT1G62700.2 47.771 157 73 3 17 167 9 162 7.79e-48 164
Msa0607180 AT3G10480.2 51.974 152 63 3 17 161 29 177 2.93e-47 164
Msa0607180 AT3G10480.1 52.288 153 62 4 17 161 29 178 5.42e-47 164
Msa0607180 AT4G27410.2 51.266 158 68 5 13 164 11 165 2.11e-46 158
Msa0607180 AT1G69490.1 44.693 179 86 3 10 178 3 178 1.42e-45 155
Msa0607180 AT3G10490.1 49.359 156 62 5 17 161 29 178 1.66e-45 154
Msa0607180 AT2G43000.1 49.045 157 71 3 16 166 19 172 1.71e-45 155
Msa0607180 AT1G12260.2 43.915 189 84 5 17 199 9 181 1.72e-45 157
Msa0607180 AT1G01720.1 48.701 154 66 3 17 161 9 158 3.32e-45 155
Msa0607180 AT1G34180.3 44.000 175 88 3 13 185 14 180 3.35e-45 159
Msa0607180 AT3G17730.1 46.875 160 75 3 17 169 8 164 4.90e-45 153
Msa0607180 AT1G12260.1 43.915 189 84 5 17 199 9 181 5.07e-45 157
Msa0607180 AT5G04410.1 49.697 165 72 5 17 173 11 172 9.75e-45 160
Msa0607180 AT1G77450.1 39.648 227 113 6 17 228 12 229 1.03e-44 152
Msa0607180 AT3G10490.2 49.359 156 62 5 17 161 29 178 1.33e-44 157
Msa0607180 AT1G34180.1 44.000 175 88 3 13 185 14 180 1.96e-44 159
Msa0607180 AT5G08790.1 39.904 208 106 6 13 209 4 203 2.48e-44 152
Msa0607180 AT4G17980.1 50.000 154 67 4 17 161 8 160 3.17e-44 152
Msa0607180 AT4G17980.2 50.000 154 67 4 17 161 8 160 4.94e-44 152
Msa0607180 AT1G61110.1 43.478 184 84 3 17 182 18 199 5.04e-44 153
Msa0607180 AT1G65910.1 43.548 186 90 5 17 194 8 186 7.85e-44 158
Msa0607180 AT3G04070.2 46.584 161 70 3 17 162 12 171 8.40e-44 153
Msa0607180 AT1G34190.1 44.000 175 88 3 13 185 14 180 9.30e-44 157
Msa0607180 AT5G46590.1 50.327 153 66 3 17 161 8 158 1.30e-43 151
Msa0607180 AT5G61430.1 46.626 163 76 4 12 166 12 171 1.55e-43 152
Msa0607180 AT3G03200.1 43.158 190 93 4 17 198 8 190 2.30e-43 155
Msa0607180 AT3G15500.1 47.500 160 75 3 13 166 11 167 3.01e-43 150
Msa0607180 AT5G62380.2 48.344 151 69 3 17 161 9 156 3.11e-43 151
Msa0607180 AT5G62380.1 48.344 151 69 3 17 161 9 156 3.11e-43 151
Msa0607180 AT3G15510.1 37.736 212 111 4 19 214 21 227 3.90e-43 151
Msa0607180 AT4G27410.3 46.857 175 67 6 13 164 11 182 4.28e-43 150
Msa0607180 AT1G33060.1 43.350 203 95 5 9 198 12 207 5.88e-43 156
Msa0607180 AT1G33060.2 43.350 203 95 5 9 198 12 207 6.33e-43 156
Msa0607180 AT4G36160.1 49.007 151 68 4 17 161 12 159 7.21e-43 151
Msa0607180 AT4G36160.3 49.007 151 68 4 17 161 12 159 7.21e-43 151
Msa0607180 AT5G46590.2 54.545 132 56 2 17 146 8 137 9.29e-43 148
Msa0607180 AT4G36160.2 49.007 151 68 4 17 161 16 163 1.02e-42 151
Msa0607180 AT2G18060.3 43.713 167 82 4 4 164 1 161 1.28e-42 150
Msa0607180 AT2G18060.1 43.713 167 82 4 4 164 1 161 1.28e-42 150
Msa0607180 AT3G10500.1 47.097 155 72 4 17 164 11 162 1.59e-42 154
Msa0607180 AT5G39610.1 48.101 158 71 4 12 161 16 170 3.73e-42 147
Msa0607180 AT5G63790.1 43.103 174 84 4 13 175 47 216 3.99e-42 147
Msa0607180 AT1G34180.4 40.107 187 90 3 13 185 14 192 4.34e-42 151
Msa0607180 AT5G63790.2 40.000 205 103 5 13 206 57 252 4.50e-42 147
Msa0607180 AT1G52890.1 46.250 160 77 3 13 166 11 167 5.61e-42 147
Msa0607180 AT1G33280.1 46.154 156 76 3 17 167 10 162 8.66e-42 146
Msa0607180 AT4G10350.1 43.605 172 86 3 17 180 11 179 9.43e-42 147
Msa0607180 AT5G07680.1 38.723 235 124 7 12 238 13 235 1.16e-41 147
Msa0607180 AT2G46770.1 41.799 189 86 3 1 168 2 187 1.42e-41 147
Msa0607180 AT5G07680.2 38.428 229 122 6 17 238 5 221 1.66e-41 146
Msa0607180 AT5G17260.1 45.752 153 72 3 17 161 8 157 1.82e-41 149
Msa0607180 AT1G71930.2 45.695 151 73 3 17 161 11 158 2.14e-41 146
Msa0607180 AT1G71930.1 45.695 151 73 3 17 161 11 158 2.14e-41 146
Msa0607180 AT1G34180.2 40.107 187 90 3 13 185 14 192 2.22e-41 151
Msa0607180 AT2G24430.2 43.396 159 85 2 12 166 13 170 2.26e-41 145
Msa0607180 AT2G24430.1 43.396 159 85 2 12 166 13 170 2.26e-41 145
Msa0607180 AT3G15170.1 46.203 158 77 2 12 162 17 173 2.56e-41 145
Msa0607180 AT3G04070.1 42.373 177 70 3 17 162 12 187 3.11e-41 146
Msa0607180 AT3G29035.1 52.239 134 60 2 11 143 19 149 6.15e-41 144
Msa0607180 AT3G18400.1 43.506 154 80 2 17 166 7 157 1.08e-40 144
Msa0607180 AT5G18270.2 46.053 152 73 3 17 161 23 172 1.69e-40 144
Msa0607180 AT3G10480.3 43.011 186 62 5 17 161 29 211 1.70e-40 148
Msa0607180 AT5G66300.1 44.231 156 77 3 17 165 14 166 2.23e-40 142
Msa0607180 AT5G18270.1 46.053 152 73 3 17 161 23 172 2.49e-40 143
Msa0607180 AT5G09330.5 47.368 152 70 4 17 161 8 156 2.81e-40 147
Msa0607180 AT5G09330.2 47.368 152 70 4 17 161 8 156 2.81e-40 147
Msa0607180 AT5G09330.4 47.368 152 70 4 17 161 8 156 2.81e-40 147
Msa0607180 AT5G09330.3 47.368 152 70 4 17 161 8 156 2.81e-40 147
Msa0607180 AT5G09330.1 47.368 152 70 4 17 161 8 156 2.81e-40 147
Msa0607180 AT1G76420.1 44.156 154 81 2 17 166 24 176 3.10e-40 143
Msa0607180 AT1G32770.1 44.706 170 71 5 17 167 18 183 4.22e-40 143
Msa0607180 AT5G53950.1 41.584 202 106 5 13 204 15 214 5.97e-40 143
Msa0607180 AT3G04060.1 46.053 152 73 3 17 161 22 171 1.26e-39 142
Msa0607180 AT5G64060.1 46.711 152 71 4 17 161 8 156 2.04e-39 142
Msa0607180 AT3G61910.1 41.753 194 94 6 17 200 13 197 2.07e-39 141
Msa0607180 AT1G32510.1 46.386 166 76 4 17 169 8 173 6.43e-39 138
Msa0607180 AT1G52880.1 44.375 160 75 2 19 164 21 180 6.48e-39 139
Msa0607180 AT1G79580.3 48.387 155 73 3 17 166 19 171 9.39e-39 140
Msa0607180 AT1G79580.5 48.387 155 73 3 17 166 19 171 9.39e-39 140
Msa0607180 AT1G79580.4 48.387 155 73 3 17 166 19 171 9.39e-39 140
Msa0607180 AT1G79580.2 48.387 155 73 3 17 166 19 171 9.39e-39 140
Msa0607180 AT1G79580.1 48.387 155 73 3 17 166 19 171 9.39e-39 140
Msa0607180 AT3G44350.2 40.206 194 97 7 18 198 8 195 1.08e-38 137
Msa0607180 AT5G22380.1 38.660 194 103 6 12 192 3 193 2.48e-38 135
Msa0607180 AT3G12910.1 41.379 174 82 4 12 166 18 190 4.88e-38 137
Msa0607180 AT4G35580.1 46.452 155 72 4 15 161 8 159 5.10e-38 141
Msa0607180 AT4G35580.3 46.452 155 72 4 15 161 8 159 6.00e-38 141
Msa0607180 AT4G35580.2 46.452 155 72 4 15 161 8 159 6.57e-38 141
Msa0607180 AT1G56010.2 38.500 200 111 5 17 207 21 217 9.73e-38 136
Msa0607180 AT5G24590.2 43.784 185 90 5 15 191 12 190 3.23e-37 137
Msa0607180 AT3G49530.2 42.222 180 93 5 15 186 12 188 6.60e-37 136
Msa0607180 AT5G04395.1 45.395 152 70 1 8 146 21 172 9.24e-37 130
Msa0607180 AT1G54330.1 46.309 149 73 3 17 161 8 153 1.03e-36 133
Msa0607180 AT5G13180.1 47.651 149 70 3 17 161 16 160 1.29e-36 131
Msa0607180 AT3G49530.1 42.222 180 93 5 15 186 12 188 1.50e-36 136
Msa0607180 AT3G12977.1 42.857 154 79 3 17 164 20 170 2.15e-36 132
Msa0607180 AT5G22290.1 38.220 191 108 4 15 199 21 207 4.29e-36 132
Msa0607180 AT2G33480.2 46.358 151 72 3 17 164 17 161 8.19e-36 130
Msa0607180 AT4G28530.1 42.169 166 72 5 17 162 12 173 9.27e-36 132
Msa0607180 AT2G33480.1 45.752 153 72 4 17 164 17 163 5.92e-35 127
Msa0607180 AT1G32870.2 49.045 157 66 4 17 164 12 163 6.49e-34 130
Msa0607180 AT1G32870.1 49.045 157 66 4 17 164 12 163 6.66e-34 130
Msa0607180 AT1G32870.3 49.045 157 66 4 17 164 48 199 1.18e-33 129
Msa0607180 AT3G44350.1 44.604 139 66 4 18 149 8 142 3.84e-33 120
Msa0607180 AT4G01550.1 44.444 153 76 4 16 162 5 154 5.33e-33 126
Msa0607180 AT2G27300.1 39.597 149 82 4 16 162 15 157 2.92e-32 122
Msa0607180 AT3G44290.2 40.816 147 81 3 15 160 14 155 1.02e-31 118
Msa0607180 AT3G44290.1 40.816 147 81 3 15 160 14 155 4.88e-31 119
Msa0607180 AT4G01520.1 38.961 154 90 3 18 167 7 160 7.18e-30 115
Msa0607180 AT1G56010.1 51.376 109 42 4 63 163 1 106 1.76e-29 113
Msa0607180 AT5G61430.2 48.649 111 47 3 63 166 1 108 3.48e-29 112
Msa0607180 AT4G01540.3 39.103 156 91 3 16 167 5 160 1.55e-28 114
Msa0607180 AT4G01540.4 39.103 156 91 3 16 167 5 160 2.61e-28 112
Msa0607180 AT4G01540.1 39.103 156 91 3 16 167 5 160 3.27e-28 113
Msa0607180 AT4G01540.2 39.103 156 91 3 16 167 5 160 3.37e-28 112
Msa0607180 AT4G10350.2 44.068 118 58 2 68 180 18 132 1.12e-27 109
Msa0607180 AT3G12977.2 48.077 104 45 3 64 161 14 114 1.24e-27 107
Msa0607180 AT5G64530.1 35.088 171 88 4 17 177 5 162 1.60e-22 92.8
Msa0607180 AT2G33480.3 45.098 102 48 3 68 164 8 106 2.20e-22 93.2
Msa0607180 AT5G64530.2 39.535 129 65 3 17 145 5 120 2.78e-22 91.3
Msa0607180 AT1G02250.1 38.000 150 85 4 18 162 6 152 9.41e-22 94.4
Msa0607180 AT1G02230.1 33.533 167 99 5 18 177 6 167 2.02e-20 90.5
Msa0607180 AT3G04420.2 31.138 167 108 3 18 180 6 169 4.39e-19 85.9
Msa0607180 AT1G01010.1 34.706 170 92 7 18 174 6 169 9.48e-19 86.3
Msa0607180 AT3G04420.1 31.138 167 108 3 18 180 6 169 1.26e-18 85.1
Msa0607180 AT2G43000.2 44.792 96 44 3 77 166 2 94 3.98e-18 81.3
Msa0607180 AT4G28530.2 38.938 113 48 3 17 112 12 120 1.34e-17 82.0
Msa0607180 AT2G18060.2 47.297 74 33 2 94 164 3 73 9.67e-17 79.0
Msa0607180 AT3G04430.1 41.739 115 50 6 21 127 6 111 2.11e-16 76.6
Msa0607180 AT3G56530.1 34.395 157 93 5 10 159 46 199 6.41e-16 77.4
Msa0607180 AT1G02220.1 33.103 145 87 4 18 158 6 144 1.70e-15 76.6
Msa0607180 AT3G10490.4 46.988 83 29 4 88 161 2 78 2.26e-15 75.9
Msa0607180 AT3G10490.3 46.988 83 29 4 88 161 2 78 2.26e-15 75.9
Msa0607180 AT3G55210.1 31.928 166 95 6 17 167 13 175 2.43e-15 75.1
Msa0607180 AT5G14000.2 32.812 128 79 3 18 143 18 140 5.43e-15 71.6
Msa0607180 AT5G22290.2 36.036 111 62 3 94 199 2 108 5.85e-15 73.2
Msa0607180 AT5G14000.1 28.902 173 111 6 14 179 13 180 1.03e-14 72.0
Msa0607180 AT5G50820.1 31.217 189 105 7 17 197 19 190 2.51e-13 67.8

Find 101 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTAGTATCTGTTTATTT+TGG 0.152559 4_2:+53906848 Msa0607180:three_prime_UTR
TTGGGGTGGTCTTATGTTTA+AGG 0.160016 4_2:-53904648 None:intergenic
AGAATTGTTGATTACATTAA+AGG 0.176799 4_2:-53907138 None:intergenic
CTTGAAAAGACTTATTAATT+TGG 0.188712 4_2:-53904572 None:intergenic
ATTGGACCCAAGATACATTT+TGG 0.198299 4_2:+53906723 Msa0607180:CDS
TCATGTTCAGATTCTTTCTT+AGG 0.221095 4_2:-53906560 None:intergenic
TGATTTCTATCTTAAGAATA+TGG 0.228122 4_2:+53904825 Msa0607180:CDS
GTCTTATGTTTAAGGTTGTT+TGG 0.248733 4_2:-53904640 None:intergenic
GCACAACTGAGAAAGGTTTC+TGG 0.285017 4_2:+53905139 Msa0607180:CDS
AATGACTTGTTGAAACAATA+AGG 0.289381 4_2:-53906537 None:intergenic
TGATACAAGCTAAATTAATT+AGG 0.289576 4_2:+53906914 Msa0607180:three_prime_UTR
GAGAATATATTGATTATATA+TGG 0.296739 4_2:+53904720 Msa0607180:exon
GTTATGAGAGTGTATTTATA+AGG 0.300985 4_2:-53904538 None:intergenic
GTCTTGTTGTGTGTAGTTAA+AGG 0.331878 4_2:-53906498 None:intergenic
CCGGAAAATCGTGACGTTAT+CGG 0.347516 4_2:+53905179 Msa0607180:CDS
ACTGAACAAATTACACTTCC+AGG 0.347917 4_2:+53904769 Msa0607180:CDS
ATAGTCCTTGGCTACAAAAC+TGG 0.348323 4_2:+53906756 Msa0607180:CDS
TTTAGCTATATAATGTTGTT+GGG 0.353592 4_2:-53904666 None:intergenic
TCGGATCCGAAACGCATAAT+CGG 0.363961 4_2:+53905198 Msa0607180:CDS
AATTGTGAAAGATAATAAAA+AGG 0.367531 4_2:+53906628 Msa0607180:CDS
CTCAACCCGATTATGCGTTT+CGG 0.375306 4_2:-53905204 None:intergenic
AGAAAAGTATATTTATCAAT+AGG 0.375311 4_2:-53907161 None:intergenic
ATTATATCTCATCTAAGAAC+CGG 0.378363 4_2:-53906995 None:intergenic
TATATAGGTTTGTCAAAGGT+TGG 0.383447 4_2:+53905051 Msa0607180:intron
GAAGAAGGTGGGGAAGATGT+AGG 0.386986 4_2:-53906458 None:intergenic
AAGAAGGTGGGGAAGATGTA+GGG 0.391402 4_2:-53906457 None:intergenic
AAACTTCGTTATGATGTCAT+TGG 0.391717 4_2:+53904859 Msa0607180:CDS
TCTTATGTTTAAGGTTGTTT+GGG 0.392186 4_2:-53904639 None:intergenic
ATATAGGTTTGTCAAAGGTT+GGG 0.396654 4_2:+53905052 Msa0607180:intron
ACATCTTTGCAATTGCCCTT+AGG 0.396815 4_2:+53906659 Msa0607180:CDS
CATCTTTGCAATTGCCCTTA+GGG 0.400405 4_2:+53906660 Msa0607180:CDS
GCTATAGGTAACTGAAGTTC+AGG 0.401665 4_2:-53906695 None:intergenic
GGGCTCAGCTTAATAGTCCT+TGG 0.407233 4_2:+53906744 Msa0607180:CDS
CAAGAGGAACCAAGACTGAT+TGG 0.409549 4_2:+53905259 Msa0607180:CDS
CCTTTCTCAGTTGTGCGATT+AGG 0.410304 4_2:-53905132 None:intergenic
CAATCAGTCTTGGTTCCTCT+TGG 0.413050 4_2:-53905258 None:intergenic
GCTGAGCCCAAAATGTATCT+TGG 0.418008 4_2:-53906730 None:intergenic
TATCTTAAGAATATGGTTGT+TGG 0.419156 4_2:+53904832 Msa0607180:CDS
TTTATAAGGAATGGTTGGTT+TGG 0.424643 4_2:-53904524 None:intergenic
TTGATTATATATGGCATCAA+TGG 0.441959 4_2:+53904729 Msa0607180:exon
CGGATCCGAAACGCATAATC+GGG 0.449323 4_2:+53905199 Msa0607180:CDS
TATAGGTTTGTCAAAGGTTG+GGG 0.462857 4_2:+53905053 Msa0607180:intron
CTGAGCCCAAAATGTATCTT+GGG 0.464405 4_2:-53906729 None:intergenic
AGTTACCTATAGCTGCAGAT+TGG 0.469574 4_2:+53906705 Msa0607180:CDS
TTAGGCAAGGGGCTATTGTC+AGG 0.479868 4_2:-53905303 None:intergenic
CCTAATCGCACAACTGAGAA+AGG 0.487326 4_2:+53905132 Msa0607180:CDS
ATTCATAACCCAATCAGTCT+TGG 0.489277 4_2:-53905268 None:intergenic
AGGTACATTGTCCTTCCCTA+AGG 0.489812 4_2:-53906675 None:intergenic
ATGACTTGTTGAAACAATAA+GGG 0.490222 4_2:-53906536 None:intergenic
GTGGGGTGAAATCTGAATCC+TGG 0.490756 4_2:-53904787 None:intergenic
TTCCCCACCTTCTTCCTCTA+CGG 0.492417 4_2:+53906466 Msa0607180:CDS
GCTATATAATGTTGTTGGGG+TGG 0.495521 4_2:-53904662 None:intergenic
AGAAGAAGAGATGAAACAAA+TGG 0.498288 4_2:+53906427 Msa0607180:CDS
TGGGTCCAATCTGCAGCTAT+AGG 0.498639 4_2:-53906710 None:intergenic
TCAAGGAGTTCTTCTTCTGT+GGG 0.500082 4_2:-53904805 None:intergenic
ACAAGCTAAATTAATTAGGC+AGG 0.504198 4_2:+53906918 Msa0607180:three_prime_UTR
GTTTAAGGTTGTTTGGGCAG+AGG 0.506348 4_2:-53904633 None:intergenic
AAGAGGAACCAAGACTGATT+GGG 0.506930 4_2:+53905260 Msa0607180:CDS
TATTCTTAAGATAGAAATCA+AGG 0.507383 4_2:-53904822 None:intergenic
CAAAGGTTGGGGAAAGAGAA+TGG 0.507736 4_2:+53905064 Msa0607180:CDS
GAGAGTGTATTTATAAGGAA+TGG 0.511533 4_2:-53904533 None:intergenic
ATCAAGGAGTTCTTCTTCTG+TGG 0.511582 4_2:-53904806 None:intergenic
AGGGGCTATTGTCAGGTAAA+CGG 0.514663 4_2:-53905296 None:intergenic
CATGATCCTTGTGACTTGCC+AGG 0.515932 4_2:+53904901 Msa0607180:CDS
AGAAGGTGGGGAAGATGTAG+GGG 0.520080 4_2:-53906456 None:intergenic
TGACAATAGCCCCTTGCCTA+AGG 0.525791 4_2:+53905305 Msa0607180:CDS
TTAGCTATATAATGTTGTTG+GGG 0.526566 4_2:-53904665 None:intergenic
ATTATGCAAGATATATAGAA+AGG 0.533180 4_2:+53906367 Msa0607180:CDS
TTTCTGGAAAGCCACCGGTT+CGG 0.534834 4_2:+53905155 Msa0607180:CDS
CTGGCAAGTCACAAGGATCA+TGG 0.537753 4_2:-53904900 None:intergenic
AGAAGAGATGAAACAAATGG+TGG 0.549954 4_2:+53906430 Msa0607180:CDS
GTGTATTTATAAGGAATGGT+TGG 0.550128 4_2:-53904529 None:intergenic
TTTGCAATTGCCCTTAGGGA+AGG 0.552390 4_2:+53906664 Msa0607180:CDS
GGAAAGCCACCGGTTCGGAC+CGG 0.552889 4_2:+53905160 Msa0607180:CDS
ATATACAATACCTTAGGCAA+GGG 0.556768 4_2:-53905315 None:intergenic
ATGATATATAGGTTTGTCAA+AGG 0.562913 4_2:+53905047 Msa0607180:intron
TATATACAATACCTTAGGCA+AGG 0.566468 4_2:-53905316 None:intergenic
AAAGGTTTCTGGAAAGCCAC+CGG 0.569247 4_2:+53905150 Msa0607180:CDS
GGTACATTGTCCTTCCCTAA+GGG 0.570401 4_2:-53906674 None:intergenic
CGAAACGCATAATCGGGTTG+AGG 0.590544 4_2:+53905205 Msa0607180:CDS
ATTATATATGGCATCAATGG+AGG 0.593615 4_2:+53904732 Msa0607180:exon
AATAATTAAAACTGAAGACA+TGG 0.594981 4_2:+53906583 Msa0607180:CDS
CTAAGCTATGAGTCACTATG+TGG 0.604065 4_2:-53904698 None:intergenic
GTCCGTAGAGGAAGAAGGTG+GGG 0.607988 4_2:-53906468 None:intergenic
AGGAACATAAAAGCTAGTGT+TGG 0.608902 4_2:-53904613 None:intergenic
GTGTCCGTAGAGGAAGAAGG+TGG 0.609803 4_2:-53906470 None:intergenic
GGTAGATTAGTTGTTTACGT+TGG 0.615485 4_2:+53907092 Msa0607180:three_prime_UTR
ATAAGGGCATGGACACGTGT+TGG 0.615885 4_2:-53906520 None:intergenic
GAAGAGATGAAACAAATGGT+GGG 0.618089 4_2:+53906431 Msa0607180:CDS
TTACAATAATTAGTTACACT+TGG 0.619571 4_2:+53907071 Msa0607180:three_prime_UTR
AATCGGGTTGAGGAAGACGT+TGG 0.622308 4_2:+53905215 Msa0607180:CDS
ATTGTGTCCGTAGAGGAAGA+AGG 0.636049 4_2:-53906473 None:intergenic
AAAGGAGATTGTGTCCGTAG+AGG 0.637647 4_2:-53906480 None:intergenic
TGTCCGTAGAGGAAGAAGGT+GGG 0.638792 4_2:-53906469 None:intergenic
TTGTTGAAACAATAAGGGCA+TGG 0.638825 4_2:-53906531 None:intergenic
TTATATCTCATCTAAGAACC+GGG 0.641958 4_2:-53906994 None:intergenic
ACTATACCTGGCAAGTCACA+AGG 0.654035 4_2:-53904907 None:intergenic
TATACAATACCTTAGGCAAG+GGG 0.661978 4_2:-53905314 None:intergenic
CAAGGAGTTCTTCTTCTGTG+GGG 0.678001 4_2:-53904804 None:intergenic
TGAAACTCGACAATTCTACC+CGG 0.726126 4_2:+53906976 Msa0607180:three_prime_UTR
TATGAGGGAAGAGCTCCAAG+AGG 0.740807 4_2:+53905243 Msa0607180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAAATTCAGAATAT+TGG - chr4_2:53906792-53906811 None:intergenic 10.0%
!!! GAGAATATATTGATTATATA+TGG + chr4_2:53904720-53904739 Msa0607180:exon 15.0%
!! TTCAAATTAAATTAATGTCT+AGG - chr4_2:53904978-53904997 None:intergenic 15.0%
!!! TTTTTTTTTACATTGAATGA+AGG - chr4_2:53905553-53905572 None:intergenic 15.0%
!! TCATTCAATGTAAAAAAAAA+TGG + chr4_2:53905553-53905572 Msa0607180:intron 15.0%
!! CATTCAATGTAAAAAAAAAT+GGG + chr4_2:53905554-53905573 Msa0607180:intron 15.0%
!! AACTATATATAATTGAATGA+AGG - chr4_2:53905904-53905923 None:intergenic 15.0%
!! AATTGTGAAAGATAATAAAA+AGG + chr4_2:53906628-53906647 Msa0607180:CDS 15.0%
!!! TTATTAGTATCTGTTTATTT+TGG + chr4_2:53906848-53906867 Msa0607180:three_prime_UTR 15.0%
!!! AGAAAAGTATATTTATCAAT+AGG - chr4_2:53907164-53907183 None:intergenic 15.0%
!! CTTGAAAAGACTTATTAATT+TGG - chr4_2:53904575-53904594 None:intergenic 20.0%
!! TTTAGCTATATAATGTTGTT+GGG - chr4_2:53904669-53904688 None:intergenic 20.0%
!!! TTTTAGCTATATAATGTTGT+TGG - chr4_2:53904670-53904689 None:intergenic 20.0%
!! TATTCTTAAGATAGAAATCA+AGG - chr4_2:53904825-53904844 None:intergenic 20.0%
!! TGATTTCTATCTTAAGAATA+TGG + chr4_2:53904825-53904844 Msa0607180:CDS 20.0%
!! AGATATATATACAATACCTT+AGG - chr4_2:53905324-53905343 None:intergenic 20.0%
!! ATTCATAGTTAAAGCTTATA+TGG - chr4_2:53905439-53905458 None:intergenic 20.0%
!! GATATATATCAAAATCACAT+GGG - chr4_2:53905489-53905508 None:intergenic 20.0%
!! TGATATATATCAAAATCACA+TGG - chr4_2:53905490-53905509 None:intergenic 20.0%
!!! TGTGATTTTGATATATATCA+CGG + chr4_2:53905490-53905509 Msa0607180:intron 20.0%
!!! TTTTTTACTTTTTTCACAAG+AGG + chr4_2:53906003-53906022 Msa0607180:intron 20.0%
!!! TTTTTACTTTTTTCACAAGA+GGG + chr4_2:53906004-53906023 Msa0607180:intron 20.0%
!! CAAACATAAACTAATGAAAT+TGG + chr4_2:53906269-53906288 Msa0607180:intron 20.0%
!! AAAAATACTAATATATGCCA+TGG + chr4_2:53906322-53906341 Msa0607180:intron 20.0%
!! ATTATGCAAGATATATAGAA+AGG + chr4_2:53906367-53906386 Msa0607180:CDS 20.0%
!! AATAATTAAAACTGAAGACA+TGG + chr4_2:53906583-53906602 Msa0607180:CDS 20.0%
!! TGATACAAGCTAAATTAATT+AGG + chr4_2:53906914-53906933 Msa0607180:three_prime_UTR 20.0%
!! TTACAATAATTAGTTACACT+TGG + chr4_2:53907071-53907090 Msa0607180:three_prime_UTR 20.0%
!!! AGAATTGTTGATTACATTAA+AGG - chr4_2:53907141-53907160 None:intergenic 20.0%
!! GTTATGAGAGTGTATTTATA+AGG - chr4_2:53904541-53904560 None:intergenic 25.0%
!! TCTTATGTTTAAGGTTGTTT+GGG - chr4_2:53904642-53904661 None:intergenic 25.0%
! TTAGCTATATAATGTTGTTG+GGG - chr4_2:53904668-53904687 None:intergenic 25.0%
! TTGATTATATATGGCATCAA+TGG + chr4_2:53904729-53904748 Msa0607180:exon 25.0%
! TATCTTAAGAATATGGTTGT+TGG + chr4_2:53904832-53904851 Msa0607180:CDS 25.0%
! GTAACACATAATATGATACT+AGG - chr4_2:53904948-53904967 None:intergenic 25.0%
!! GAATGTTTTGCATGATATAT+AGG + chr4_2:53905036-53905055 Msa0607180:intron 25.0%
! ATGATATATAGGTTTGTCAA+AGG + chr4_2:53905047-53905066 Msa0607180:intron 25.0%
! CCAAAAATATACTACAGAAT+GGG - chr4_2:53905385-53905404 None:intergenic 25.0%
! ACCAAAAATATACTACAGAA+TGG - chr4_2:53905386-53905405 None:intergenic 25.0%
! AGTTAAAGCTTATATGGTTA+TGG - chr4_2:53905433-53905452 None:intergenic 25.0%
!!! GTGATTTTGATATATATCAC+GGG + chr4_2:53905491-53905510 Msa0607180:intron 25.0%
! CAATGTAAAAAAAAATGGGA+AGG + chr4_2:53905558-53905577 Msa0607180:intron 25.0%
!! AAAAGATTCCCATGTTATTT+GGG - chr4_2:53905987-53906006 None:intergenic 25.0%
! AAAAAGATTCCCATGTTATT+TGG - chr4_2:53905988-53906007 None:intergenic 25.0%
!!! TGTTTATTTTAGTCACGAAT+TGG + chr4_2:53906031-53906050 Msa0607180:intron 25.0%
!! AGCTAGGAGTTAATTTTTAT+AGG + chr4_2:53906057-53906076 Msa0607180:intron 25.0%
! AATTAGTTGCAAGTCTTAAT+TGG - chr4_2:53906223-53906242 None:intergenic 25.0%
!!! ATGACTTGTTGAAACAATAA+GGG - chr4_2:53906539-53906558 None:intergenic 25.0%
!!! AATGACTTGTTGAAACAATA+AGG - chr4_2:53906540-53906559 None:intergenic 25.0%
! AAAGATAATAAAAAGGCTTG+TGG + chr4_2:53906635-53906654 Msa0607180:CDS 25.0%
! ATTATATCTCATCTAAGAAC+CGG - chr4_2:53906998-53907017 None:intergenic 25.0%
! TTTATAAGGAATGGTTGGTT+TGG - chr4_2:53904527-53904546 None:intergenic 30.0%
GTGTATTTATAAGGAATGGT+TGG - chr4_2:53904532-53904551 None:intergenic 30.0%
! GAGAGTGTATTTATAAGGAA+TGG - chr4_2:53904536-53904555 None:intergenic 30.0%
! GTCTTATGTTTAAGGTTGTT+TGG - chr4_2:53904643-53904662 None:intergenic 30.0%
ATTATATATGGCATCAATGG+AGG + chr4_2:53904732-53904751 Msa0607180:exon 30.0%
AAACTTCGTTATGATGTCAT+TGG + chr4_2:53904859-53904878 Msa0607180:CDS 30.0%
TATATAGGTTTGTCAAAGGT+TGG + chr4_2:53905051-53905070 Msa0607180:intron 30.0%
ATATAGGTTTGTCAAAGGTT+GGG + chr4_2:53905052-53905071 Msa0607180:intron 30.0%
ATATACAATACCTTAGGCAA+GGG - chr4_2:53905318-53905337 None:intergenic 30.0%
TATATACAATACCTTAGGCA+AGG - chr4_2:53905319-53905338 None:intergenic 30.0%
! CCCATTCTGTAGTATATTTT+TGG + chr4_2:53905382-53905401 Msa0607180:intron 30.0%
TCAATTAGTCATCGTATGAT+AGG - chr4_2:53905410-53905429 None:intergenic 30.0%
!!! GAAGTGTCATGTTTGTTTTT+TGG - chr4_2:53905860-53905879 None:intergenic 30.0%
AAACAAACATGACACTTCAT+AGG + chr4_2:53905862-53905881 Msa0607180:intron 30.0%
! ATGATATGCTTGCTTTGTTA+TGG + chr4_2:53905952-53905971 Msa0607180:intron 30.0%
AAATTTCCATGAAGATAGCT+AGG + chr4_2:53906126-53906145 Msa0607180:intron 30.0%
! TTCTTTCTGTACAAGTATTG+TGG + chr4_2:53906159-53906178 Msa0607180:intron 30.0%
AAGAAACGAAAGGTTCATAA+GGG - chr4_2:53906187-53906206 None:intergenic 30.0%
AAAGAAACGAAAGGTTCATA+AGG - chr4_2:53906188-53906207 None:intergenic 30.0%
TTCATCATGAAAGAAACGAA+AGG - chr4_2:53906197-53906216 None:intergenic 30.0%
AGAAGAAGAGATGAAACAAA+TGG + chr4_2:53906427-53906446 Msa0607180:CDS 30.0%
TCATGTTCAGATTCTTTCTT+AGG - chr4_2:53906563-53906582 None:intergenic 30.0%
ACAAGCTAAATTAATTAGGC+AGG + chr4_2:53906918-53906937 Msa0607180:three_prime_UTR 30.0%
TTATATCTCATCTAAGAACC+GGG - chr4_2:53906997-53907016 None:intergenic 30.0%
AGGAACATAAAAGCTAGTGT+TGG - chr4_2:53904616-53904635 None:intergenic 35.0%
ACTGAACAAATTACACTTCC+AGG + chr4_2:53904769-53904788 Msa0607180:CDS 35.0%
TGATTGATTAGCACTATACC+TGG - chr4_2:53904922-53904941 None:intergenic 35.0%
TATAGGTTTGTCAAAGGTTG+GGG + chr4_2:53905053-53905072 Msa0607180:intron 35.0%
!!! AATGGTATTTTTTCGTGCCA+AGG + chr4_2:53905082-53905101 Msa0607180:CDS 35.0%
!!! ATGGTATTTTTTCGTGCCAA+GGG + chr4_2:53905083-53905102 Msa0607180:CDS 35.0%
!!! AAGACGTTGGTTTTCTATGA+GGG + chr4_2:53905228-53905247 Msa0607180:CDS 35.0%
ATTCATAACCCAATCAGTCT+TGG - chr4_2:53905271-53905290 None:intergenic 35.0%
TATACAATACCTTAGGCAAG+GGG - chr4_2:53905317-53905336 None:intergenic 35.0%
TTTCACTTGAAATCGAACTC+AGG - chr4_2:53905739-53905758 None:intergenic 35.0%
GGAAAATGATCCTAGTAATC+TGG - chr4_2:53905802-53905821 None:intergenic 35.0%
!!! GTTTTTTGGTTTTAACCCTC+TGG - chr4_2:53905846-53905865 None:intergenic 35.0%
CAGATTCTCCCAAATAACAT+GGG + chr4_2:53905976-53905995 Msa0607180:intron 35.0%
TAACGTGCATATCTCTTACA+TGG + chr4_2:53906098-53906117 Msa0607180:intron 35.0%
TGCATATCTCTTACATGGAA+GGG + chr4_2:53906103-53906122 Msa0607180:intron 35.0%
AGAAACGAAAGGTTCATAAG+GGG - chr4_2:53906186-53906205 None:intergenic 35.0%
AGAAGAGATGAAACAAATGG+TGG + chr4_2:53906430-53906449 Msa0607180:CDS 35.0%
GAAGAGATGAAACAAATGGT+GGG + chr4_2:53906431-53906450 Msa0607180:CDS 35.0%
! GTCTTGTTGTGTGTAGTTAA+AGG - chr4_2:53906501-53906520 None:intergenic 35.0%
TTGTTGAAACAATAAGGGCA+TGG - chr4_2:53906534-53906553 None:intergenic 35.0%
! ATTGGACCCAAGATACATTT+TGG + chr4_2:53906723-53906742 Msa0607180:CDS 35.0%
! TTGGACCCAAGATACATTTT+GGG + chr4_2:53906724-53906743 Msa0607180:CDS 35.0%
! GGTAGATTAGTTGTTTACGT+TGG + chr4_2:53907092-53907111 Msa0607180:three_prime_UTR 35.0%
!! TTGGGGTGGTCTTATGTTTA+AGG - chr4_2:53904651-53904670 None:intergenic 40.0%
GCTATATAATGTTGTTGGGG+TGG - chr4_2:53904665-53904684 None:intergenic 40.0%
CTAAGCTATGAGTCACTATG+TGG - chr4_2:53904701-53904720 None:intergenic 40.0%
TCAAGGAGTTCTTCTTCTGT+GGG - chr4_2:53904808-53904827 None:intergenic 40.0%
ATCAAGGAGTTCTTCTTCTG+TGG - chr4_2:53904809-53904828 None:intergenic 40.0%
!!! CTACCATGTTTTTTGTCCCT+TGG - chr4_2:53905102-53905121 None:intergenic 40.0%
AGGGACAAAAAACATGGTAG+TGG + chr4_2:53905102-53905121 Msa0607180:CDS 40.0%
!! GACAAAAAACATGGTAGTGG+AGG + chr4_2:53905105-53905124 Msa0607180:CDS 40.0%
!! AAAAACATGGTAGTGGAGGA+AGG + chr4_2:53905109-53905128 Msa0607180:CDS 40.0%
!!! GAAGACGTTGGTTTTCTATG+AGG + chr4_2:53905227-53905246 Msa0607180:CDS 40.0%
AAGAGGAACCAAGACTGATT+GGG + chr4_2:53905260-53905279 Msa0607180:CDS 40.0%
ACCAAGTGATTGAACTCAAG+TGG + chr4_2:53905676-53905695 Msa0607180:intron 40.0%
ACCACTTGAGTTCAATCACT+TGG - chr4_2:53905680-53905699 None:intergenic 40.0%
CTCGAACAATTCGTTCTATG+AGG - chr4_2:53905712-53905731 None:intergenic 40.0%
CTACCAAACTCCAGATTACT+AGG + chr4_2:53905789-53905808 Msa0607180:intron 40.0%
! GATCCTAGTAATCTGGAGTT+TGG - chr4_2:53905795-53905814 None:intergenic 40.0%
! TACTAGGATCATTTTCCCCT+AGG + chr4_2:53905805-53905824 Msa0607180:intron 40.0%
! CCATGTTATTTGGGAGAATC+TGG - chr4_2:53905978-53905997 None:intergenic 40.0%
CCAGATTCTCCCAAATAACA+TGG + chr4_2:53905975-53905994 Msa0607180:intron 40.0%
GTGCATATCTCTTACATGGA+AGG + chr4_2:53906102-53906121 Msa0607180:intron 40.0%
TCACTACCTAGCTATCTTCA+TGG - chr4_2:53906135-53906154 None:intergenic 40.0%
ACATCTTTGCAATTGCCCTT+AGG + chr4_2:53906659-53906678 Msa0607180:CDS 40.0%
CATCTTTGCAATTGCCCTTA+GGG + chr4_2:53906660-53906679 Msa0607180:CDS 40.0%
GCTATAGGTAACTGAAGTTC+AGG - chr4_2:53906698-53906717 None:intergenic 40.0%
AGTTACCTATAGCTGCAGAT+TGG + chr4_2:53906705-53906724 Msa0607180:CDS 40.0%
CTGAGCCCAAAATGTATCTT+GGG - chr4_2:53906732-53906751 None:intergenic 40.0%
ATAGTCCTTGGCTACAAAAC+TGG + chr4_2:53906756-53906775 Msa0607180:CDS 40.0%
TGAAACTCGACAATTCTACC+CGG + chr4_2:53906976-53906995 Msa0607180:three_prime_UTR 40.0%
! GTTTAAGGTTGTTTGGGCAG+AGG - chr4_2:53904636-53904655 None:intergenic 45.0%
CAAGGAGTTCTTCTTCTGTG+GGG - chr4_2:53904807-53904826 None:intergenic 45.0%
ACTATACCTGGCAAGTCACA+AGG - chr4_2:53904910-53904929 None:intergenic 45.0%
CAAAGGTTGGGGAAAGAGAA+TGG + chr4_2:53905064-53905083 Msa0607180:CDS 45.0%
GTGCCAAGGGACAAAAAACA+TGG + chr4_2:53905096-53905115 Msa0607180:CDS 45.0%
CCTTTCTCAGTTGTGCGATT+AGG - chr4_2:53905135-53905154 None:intergenic 45.0%
CCTAATCGCACAACTGAGAA+AGG + chr4_2:53905132-53905151 Msa0607180:CDS 45.0%
GCACAACTGAGAAAGGTTTC+TGG + chr4_2:53905139-53905158 Msa0607180:CDS 45.0%
! AAAGGTTTCTGGAAAGCCAC+CGG + chr4_2:53905150-53905169 Msa0607180:CDS 45.0%
! CCGATAACGTCACGATTTTC+CGG - chr4_2:53905182-53905201 None:intergenic 45.0%
CCGGAAAATCGTGACGTTAT+CGG + chr4_2:53905179-53905198 Msa0607180:CDS 45.0%
TCGGATCCGAAACGCATAAT+CGG + chr4_2:53905198-53905217 Msa0607180:CDS 45.0%
CTCAACCCGATTATGCGTTT+CGG - chr4_2:53905207-53905226 None:intergenic 45.0%
CAATCAGTCTTGGTTCCTCT+TGG - chr4_2:53905261-53905280 None:intergenic 45.0%
CAAGAGGAACCAAGACTGAT+TGG + chr4_2:53905259-53905278 Msa0607180:CDS 45.0%
AGGGGCTATTGTCAGGTAAA+CGG - chr4_2:53905299-53905318 None:intergenic 45.0%
! GATCATTTTCCCCTAGGAAC+CGG + chr4_2:53905811-53905830 Msa0607180:intron 45.0%
!! AGTCACGAATTGGACTAGCT+AGG + chr4_2:53906041-53906060 Msa0607180:intron 45.0%
AAGAAGGTGGGGAAGATGTA+GGG - chr4_2:53906460-53906479 None:intergenic 45.0%
ATTGTGTCCGTAGAGGAAGA+AGG - chr4_2:53906476-53906495 None:intergenic 45.0%
AAAGGAGATTGTGTCCGTAG+AGG - chr4_2:53906483-53906502 None:intergenic 45.0%
TTTGCAATTGCCCTTAGGGA+AGG + chr4_2:53906664-53906683 Msa0607180:CDS 45.0%
GGTACATTGTCCTTCCCTAA+GGG - chr4_2:53906677-53906696 None:intergenic 45.0%
AGGTACATTGTCCTTCCCTA+AGG - chr4_2:53906678-53906697 None:intergenic 45.0%
GCTGAGCCCAAAATGTATCT+TGG - chr4_2:53906733-53906752 None:intergenic 45.0%
GTGGGGTGAAATCTGAATCC+TGG - chr4_2:53904790-53904809 None:intergenic 50.0%
CTGGCAAGTCACAAGGATCA+TGG - chr4_2:53904903-53904922 None:intergenic 50.0%
! CATGATCCTTGTGACTTGCC+AGG + chr4_2:53904901-53904920 Msa0607180:CDS 50.0%
! TTTCTGGAAAGCCACCGGTT+CGG + chr4_2:53905155-53905174 Msa0607180:CDS 50.0%
CGGATCCGAAACGCATAATC+GGG + chr4_2:53905199-53905218 Msa0607180:CDS 50.0%
! CGAAACGCATAATCGGGTTG+AGG + chr4_2:53905205-53905224 Msa0607180:CDS 50.0%
!! AATCGGGTTGAGGAAGACGT+TGG + chr4_2:53905215-53905234 Msa0607180:CDS 50.0%
TATGAGGGAAGAGCTCCAAG+AGG + chr4_2:53905243-53905262 Msa0607180:CDS 50.0%
TTAGGCAAGGGGCTATTGTC+AGG - chr4_2:53905306-53905325 None:intergenic 50.0%
TGACAATAGCCCCTTGCCTA+AGG + chr4_2:53905305-53905324 Msa0607180:CDS 50.0%
ATTACGAGTCCGGTTCCTAG+GGG - chr4_2:53905823-53905842 None:intergenic 50.0%
GATTACGAGTCCGGTTCCTA+GGG - chr4_2:53905824-53905843 None:intergenic 50.0%
AACCGGACTCGTAATCCAGA+GGG + chr4_2:53905828-53905847 Msa0607180:intron 50.0%
AACCCTCTGGATTACGAGTC+CGG - chr4_2:53905833-53905852 None:intergenic 50.0%
TGCCATGGTACGTATGTGAC+AGG + chr4_2:53906337-53906356 Msa0607180:intron 50.0%
GTCCTGTCACATACGTACCA+TGG - chr4_2:53906342-53906361 None:intergenic 50.0%
AGAAGGTGGGGAAGATGTAG+GGG - chr4_2:53906459-53906478 None:intergenic 50.0%
GAAGAAGGTGGGGAAGATGT+AGG - chr4_2:53906461-53906480 None:intergenic 50.0%
TTCCCCACCTTCTTCCTCTA+CGG + chr4_2:53906466-53906485 Msa0607180:CDS 50.0%
TGTCCGTAGAGGAAGAAGGT+GGG - chr4_2:53906472-53906491 None:intergenic 50.0%
! ATAAGGGCATGGACACGTGT+TGG - chr4_2:53906523-53906542 None:intergenic 50.0%
TGGGTCCAATCTGCAGCTAT+AGG - chr4_2:53906713-53906732 None:intergenic 50.0%
GGGCTCAGCTTAATAGTCCT+TGG + chr4_2:53906744-53906763 Msa0607180:CDS 50.0%
!! GCACTCCAGTTTTGTAGCCA+AGG - chr4_2:53906764-53906783 None:intergenic 50.0%
! CACGATTTTCCGGTCCGAAC+CGG - chr4_2:53905172-53905191 None:intergenic 55.0%
GGATTACGAGTCCGGTTCCT+AGG - chr4_2:53905825-53905844 None:intergenic 55.0%
GAACCGGACTCGTAATCCAG+AGG + chr4_2:53905827-53905846 Msa0607180:intron 55.0%
GTCCGTAGAGGAAGAAGGTG+GGG - chr4_2:53906471-53906490 None:intergenic 55.0%
GTGTCCGTAGAGGAAGAAGG+TGG - chr4_2:53906473-53906492 None:intergenic 55.0%
! GATTTTCCGGTCCGAACCGG+TGG - chr4_2:53905169-53905188 None:intergenic 60.0%
!! GGAAAGCCACCGGTTCGGAC+CGG + chr4_2:53905160-53905179 Msa0607180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 53904524 53907186 53904524 ID=Msa0607180;Name=Msa0607180
chr4_2 mRNA 53904524 53907186 53904524 ID=Msa0607180-mRNA-1;Parent=Msa0607180;Name=Msa0607180-mRNA-1;_AED=0.14;_eAED=0.14;_QI=215|1|1|1|1|1|3|378|300
chr4_2 exon 53904524 53904922 53904524 ID=Msa0607180-mRNA-1:exon:13402;Parent=Msa0607180-mRNA-1
chr4_2 exon 53905058 53905326 53905058 ID=Msa0607180-mRNA-1:exon:13403;Parent=Msa0607180-mRNA-1
chr4_2 exon 53906359 53907186 53906359 ID=Msa0607180-mRNA-1:exon:13404;Parent=Msa0607180-mRNA-1
chr4_2 five_prime_UTR 53904524 53904738 53904524 ID=Msa0607180-mRNA-1:five_prime_utr;Parent=Msa0607180-mRNA-1
chr4_2 CDS 53904739 53904922 53904739 ID=Msa0607180-mRNA-1:cds;Parent=Msa0607180-mRNA-1
chr4_2 CDS 53905058 53905326 53905058 ID=Msa0607180-mRNA-1:cds;Parent=Msa0607180-mRNA-1
chr4_2 CDS 53906359 53906808 53906359 ID=Msa0607180-mRNA-1:cds;Parent=Msa0607180-mRNA-1
chr4_2 three_prime_UTR 53906809 53907186 53906809 ID=Msa0607180-mRNA-1:three_prime_utr;Parent=Msa0607180-mRNA-1
Gene Sequence

>Msa0607180

ATGGCATCAATGGAGGACATCAACATGTGTACTGAACAAATTACACTTCCAGGATTCAGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAGAATATGGTTGTTGGCAAAAAACTTCGTTATGATGTCATTGGTTTTCTAAATATCTATCACCATGATCCTTGTGACTTGCCAGGTTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTTTTCGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAATCGCACAACTGAGAAAGGTTTCTGGAAAGCCACCGGTTCGGACCGGAAAATCGTGACGTTATCGGATCCGAAACGCATAATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCAAGAGGAACCAAGACTGATTGGGTTATGAATGAATACCGTTTACCTGACAATAGCCCCTTGCCTAAGGACATAGTATTATGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTTGAACAAAGAGCAGCAGAAGAAGAAGAGATGAAACAAATGGTGGGTTCCCCTACATCTTCCCCACCTTCTTCCTCTACGGACACAATCTCCTTTAACTACACACAACAAGACCAACACGTGTCCATGCCCTTATTGTTTCAACAAGTCATTCCTAAGAAAGAATCTGAACATGAAATAATTAAAACTGAAGACATGGTTTCTTTGTCAAGTCATGAAAAAATTGTGAAAGATAATAAAAAGGCTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCTGAACTTCAGTTACCTATAGCTGCAGATTGGACCCAAGATACATTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAACTGGAGTGCTTACACCAATATTCTGAATTTTTAA
Protein sequence

>Msa0607180

MASMEDINMCTEQITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMVGSPTSSPPSSSTDTISFNYTQQDQHVSMPLLFQQVIPKKESEHEIIKTEDMVSLSSHEKIVKDNKKACGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWSAYTNILNF*