Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553430 | XP_003607336.1 | 82.565 | 499 | 49 | 2 | 1 | 499 | 1 | 461 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553430 | G7JQN1 | 82.565 | 499 | 49 | 2 | 1 | 499 | 1 | 461 | 0.0 | 783 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0553430 | Msa0647780 | 0.813435 | 2.563338e-51 | -8.615850e-47 |
| Msa0553430 | Msa0690470 | 0.827753 | 1.314395e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553430 | MtrunA17_Chr4g0039111 | 82.565 | 499 | 49 | 2 | 1 | 499 | 1 | 461 | 0.0 | 783 |
| Msa0553430 | MtrunA17_Chr4g0039101 | 69.461 | 501 | 143 | 5 | 1 | 499 | 1 | 493 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553430 | AT2G43250.1 | 42.685 | 499 | 252 | 7 | 5 | 496 | 6 | 477 | 4.60e-123 | 374 |
Find 97 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTACCTACTTCTTTATT+TGG | 0.169176 | 4_1:+50554178 | Msa0553430:CDS |
| TAAACTAGGGACTGTGTTTC+AGG | 0.190651 | 4_1:-50554016 | None:intergenic |
| TGTTAGGATGGTGTTGAAAA+AGG | 0.228608 | 4_1:+50554567 | Msa0553430:CDS |
| GCAAGGTGCTGCAACTTCTT+TGG | 0.282101 | 4_1:+50554507 | Msa0553430:CDS |
| TGGCTATAATGGTCATGTTT+TGG | 0.310822 | 4_1:+50554291 | Msa0553430:CDS |
| AGGTGTTTCGTTGATAAAAT+TGG | 0.315113 | 4_1:+50554211 | Msa0553430:CDS |
| GATGAGTATGAGAGGGTTGC+TGG | 0.316031 | 4_1:+50554238 | Msa0553430:CDS |
| GCAACTTCTTTGGCTTCAAT+TGG | 0.322777 | 4_1:+50554517 | Msa0553430:CDS |
| GATGATGATGATAATGATTC+TGG | 0.326584 | 4_1:+50554424 | Msa0553430:CDS |
| GTCTGTTTCGGAGGCGGGTT+CGG | 0.338200 | 4_1:+50554639 | Msa0553430:CDS |
| CACTGGGATACTCCGCTTCC+TGG | 0.339484 | 4_1:+50555078 | Msa0553430:CDS |
| TTTCGATGAATAAAGATGTT+AGG | 0.339563 | 4_1:+50554551 | Msa0553430:CDS |
| GGTGAGCTTAAAGAGGTTCT+TGG | 0.343809 | 4_1:+50555099 | Msa0553430:CDS |
| TCTGTGGTGGCAGTTGGGGC+TGG | 0.365844 | 4_1:+50555198 | Msa0553430:CDS |
| TGACAGCAAGCAGTTGTTTA+CGG | 0.373345 | 4_1:+50555170 | Msa0553430:CDS |
| CTAGTGTCTTATCAGATATC+AGG | 0.379221 | 4_1:+50555052 | Msa0553430:CDS |
| TCACATATTCTGAAGGTAAC+GGG | 0.398720 | 4_1:+50555130 | Msa0553430:CDS |
| ATGGTTTGAGTTCGTCGAAA+TGG | 0.399823 | 4_1:-50553925 | None:intergenic |
| ATTGAGTACTCAGAGCTTCC+AGG | 0.401163 | 4_1:+50554946 | Msa0553430:CDS |
| AAACTCCGAACCAACATCTT+TGG | 0.402577 | 4_1:-50554329 | None:intergenic |
| GAAACGCCTTTCTCGCCAAC+AGG | 0.412208 | 4_1:-50554910 | None:intergenic |
| CGGATAATAGTTTCTGCATC+TGG | 0.413175 | 4_1:-50555329 | None:intergenic |
| ATGCAGCCTGTTGGCGAGAA+AGG | 0.418562 | 4_1:+50554904 | Msa0553430:CDS |
| ACAAACTGCTTAGTGTGATC+GGG | 0.423948 | 4_1:-50553977 | None:intergenic |
| CGGAACATGATTGTTCTGAT+AGG | 0.424487 | 4_1:-50554057 | None:intergenic |
| CTTTATTTGGTGTTATCAAA+AGG | 0.426684 | 4_1:+50554191 | Msa0553430:CDS |
| CTGTTATTGTTCAAGCTGAT+TGG | 0.431321 | 4_1:+50554116 | Msa0553430:CDS |
| GCTTGAACAATAACAGCATC+AGG | 0.435756 | 4_1:-50554109 | None:intergenic |
| ATAGTTCTGTGGTGGCAGTT+GGG | 0.436152 | 4_1:+50555193 | Msa0553430:CDS |
| AAAGGGTTTATCTGAAAATA+CGG | 0.437356 | 4_1:+50554585 | Msa0553430:CDS |
| AATGAGTCTGTTTCGGAGGC+GGG | 0.439205 | 4_1:+50554634 | Msa0553430:CDS |
| GATAGTTCTGTGGTGGCAGT+TGG | 0.441768 | 4_1:+50555192 | Msa0553430:CDS |
| GGCTGCCAAAGATGTTGGTT+CGG | 0.456595 | 4_1:+50554324 | Msa0553430:CDS |
| TATTCACAAAATCTCTAAAA+CGG | 0.463081 | 4_1:-50554468 | None:intergenic |
| TACAAACTGCTTAGTGTGAT+CGG | 0.465388 | 4_1:-50553978 | None:intergenic |
| TAAGCCCCTCTACGGCAAAT+CGG | 0.478190 | 4_1:-50554858 | None:intergenic |
| GAGAAGAGAGAATGTAAACT+AGG | 0.479814 | 4_1:-50554030 | None:intergenic |
| TTACTATTACCAATCAAAAG+TGG | 0.483777 | 4_1:-50554610 | None:intergenic |
| AGTACGATCTTGAGAGAAGC+TGG | 0.493091 | 4_1:-50555303 | None:intergenic |
| ACTTTCCGATTTGCCGTAGA+GGG | 0.493522 | 4_1:+50554853 | Msa0553430:CDS |
| AAATGAGTCTGTTTCGGAGG+CGG | 0.500627 | 4_1:+50554633 | Msa0553430:CDS |
| ATTGATGAGTTCACGCGCAT+CGG | 0.501516 | 4_1:-50554077 | None:intergenic |
| TGGCTTCAATTGGTTTGAAG+AGG | 0.502134 | 4_1:+50554527 | Msa0553430:CDS |
| TATATAGACTGTGCAAATGC+AGG | 0.502372 | 4_1:-50554694 | None:intergenic |
| TAGAATAGCTTTACATGATG+AGG | 0.515895 | 4_1:+50554879 | Msa0553430:CDS |
| GTGTAAACATCACTTGTGCC+TGG | 0.516628 | 4_1:-50554975 | None:intergenic |
| GCCTTTGTCAGCGTCGACAT+GGG | 0.518045 | 4_1:-50555264 | None:intergenic |
| AAACTATTATCCGTTGCCCT+TGG | 0.518071 | 4_1:+50555339 | Msa0553430:CDS |
| TATCCAAGCTACAAAACCTA+TGG | 0.524781 | 4_1:+50553888 | Msa0553430:CDS |
| AGCCTTTGTCAGCGTCGACA+TGG | 0.529215 | 4_1:-50555265 | None:intergenic |
| GTTGCAGCACCTTGCTGCTG+AGG | 0.529964 | 4_1:-50554499 | None:intergenic |
| AGAGCTTCCAGGTGATGTCC+AGG | 0.533423 | 4_1:+50554957 | Msa0553430:CDS |
| TATCAGATATCAGGAAACAC+TGG | 0.536180 | 4_1:+50555061 | Msa0553430:CDS |
| ACTTGTGCCTGGACATCACC+TGG | 0.536457 | 4_1:-50554964 | None:intergenic |
| TAGTTCTGTGGTGGCAGTTG+GGG | 0.537530 | 4_1:+50555194 | Msa0553430:CDS |
| GTACTCAATCTTATTCGACT+TGG | 0.537533 | 4_1:-50554932 | None:intergenic |
| TGGTAGAGATGAGTATGAGA+GGG | 0.538249 | 4_1:+50554231 | Msa0553430:CDS |
| AGAATAGCTTTACATGATGA+GGG | 0.540286 | 4_1:+50554880 | Msa0553430:CDS |
| AGAACCTCTTTAAGCTCACC+AGG | 0.545322 | 4_1:-50555096 | None:intergenic |
| ATAACACCAAATAAAGAAGT+AGG | 0.545666 | 4_1:-50554184 | None:intergenic |
| AGAAGAGAGAATGTAAACTA+GGG | 0.546637 | 4_1:-50554029 | None:intergenic |
| ATGTTGTTGGATGTGAATAG+AGG | 0.547789 | 4_1:+50554793 | Msa0553430:CDS |
| CGTCGACATGGGGACTACCT+TGG | 0.551635 | 4_1:-50555253 | None:intergenic |
| GCTTCCTGGTGAGCTTAAAG+AGG | 0.551773 | 4_1:+50555092 | Msa0553430:CDS |
| GATGAATAAAGATGTTAGGA+TGG | 0.552168 | 4_1:+50554555 | Msa0553430:CDS |
| ACATGCACAGAAGATGTTGT+TGG | 0.554385 | 4_1:+50554780 | Msa0553430:CDS |
| AACGGGGCTAGTTTAAATCA+TGG | 0.563180 | 4_1:+50555147 | Msa0553430:CDS |
| TCTTTAAGCTCACCAGGAAG+CGG | 0.563491 | 4_1:-50555090 | None:intergenic |
| AGCTATTCTAAGCCCCTCTA+CGG | 0.563581 | 4_1:-50554866 | None:intergenic |
| ATCACATATTCTGAAGGTAA+CGG | 0.567859 | 4_1:+50555129 | Msa0553430:CDS |
| GGAGCATCATAACTAGCTGT+TGG | 0.568658 | 4_1:-50554673 | None:intergenic |
| TTGGTAGAGATGAGTATGAG+AGG | 0.570361 | 4_1:+50554230 | Msa0553430:CDS |
| AGGAGCTTCGTCTCTGACCA+AGG | 0.573466 | 4_1:+50555236 | Msa0553430:CDS |
| TACTTTCCGATTTGCCGTAG+AGG | 0.576011 | 4_1:+50554852 | Msa0553430:CDS |
| TCGAAATGGAGTGTAGAGAA+TGG | 0.577639 | 4_1:-50553911 | None:intergenic |
| CCCCATGTCGACGCTGACAA+AGG | 0.592575 | 4_1:+50555263 | Msa0553430:CDS |
| GTTGTTTACGGATAGTTCTG+TGG | 0.604428 | 4_1:+50555182 | Msa0553430:CDS |
| TTAAGATGAACCAAGGGCAA+CGG | 0.604560 | 4_1:-50555349 | None:intergenic |
| CTTATCAGTCTGGCTACGAA+TGG | 0.609370 | 4_1:-50555001 | None:intergenic |
| TGATGTTAAGACTGTCTCTG+AGG | 0.611028 | 4_1:+50554825 | Msa0553430:CDS |
| AGCATCAACTACTGCCACAA+TGG | 0.614592 | 4_1:-50555031 | None:intergenic |
| GCTAACGCATTACCCATCAA+TGG | 0.615405 | 4_1:-50554757 | None:intergenic |
| CACATATTCTGAAGGTAACG+GGG | 0.625070 | 4_1:+50555131 | Msa0553430:CDS |
| CTTTCCGATTTGCCGTAGAG+GGG | 0.626574 | 4_1:+50554854 | Msa0553430:CDS |
| ATCAGATATCAGGAAACACT+GGG | 0.629051 | 4_1:+50555062 | Msa0553430:CDS |
| CCTTTGTCAGCGTCGACATG+GGG | 0.632576 | 4_1:-50555263 | None:intergenic |
| GAATTAATCACATATTCTGA+AGG | 0.634590 | 4_1:+50555123 | Msa0553430:CDS |
| GAATAGCTTTACATGATGAG+GGG | 0.637430 | 4_1:+50554881 | Msa0553430:CDS |
| TGATAAGTTTAAAACCATTG+TGG | 0.638774 | 4_1:+50555017 | Msa0553430:CDS |
| GTTTACGGATAGTTCTGTGG+TGG | 0.643321 | 4_1:+50555185 | Msa0553430:CDS |
| CCGTAGCTTAAGATGAACCA+AGG | 0.650188 | 4_1:-50555356 | None:intergenic |
| CAAACTGCTTAGTGTGATCG+GGG | 0.657065 | 4_1:-50553976 | None:intergenic |
| GATGAGGGGATGCAGCCTGT+TGG | 0.663325 | 4_1:+50554895 | Msa0553430:CDS |
| GGCACAAGTGATGTTTACAC+AGG | 0.664673 | 4_1:+50554978 | Msa0553430:CDS |
| GTTGGATGTGAATAGAGGAG+AGG | 0.665248 | 4_1:+50554798 | Msa0553430:CDS |
| GGAGTGTAGAGAATGGCCAT+AGG | 0.668959 | 4_1:-50553904 | None:intergenic |
| CGTAGCTTAAGATGAACCAA+GGG | 0.690545 | 4_1:-50555355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCACAAAATCTCTAAAA+CGG | - | chr4_1:50554471-50554490 | None:intergenic | 20.0% |
| !!! | TATTCACAAAATCTCTAAAA+CGG | - | chr4_1:50554471-50554490 | None:intergenic | 20.0% |
| !!! | TTGTTTACTAGTTGTTTTGA+TGG | - | chr4_1:50553947-50553966 | None:intergenic | 25.0% |
| ! | ATAACACCAAATAAAGAAGT+AGG | - | chr4_1:50554187-50554206 | None:intergenic | 25.0% |
| !!! | CTTTATTTGGTGTTATCAAA+AGG | + | chr4_1:50554191-50554210 | Msa0553430:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_1:50554551-50554570 | Msa0553430:CDS | 25.0% |
| ! | AAAGGGTTTATCTGAAAATA+CGG | + | chr4_1:50554585-50554604 | Msa0553430:CDS | 25.0% |
| ! | TTACTATTACCAATCAAAAG+TGG | - | chr4_1:50554613-50554632 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGAGTCTGTTT+CGG | + | chr4_1:50554627-50554646 | Msa0553430:CDS | 25.0% |
| !! | ATTTTCGTATTTACCATTGA+TGG | + | chr4_1:50554744-50554763 | Msa0553430:CDS | 25.0% |
| !! | TTTTCGTATTTACCATTGAT+GGG | + | chr4_1:50554745-50554764 | Msa0553430:CDS | 25.0% |
| !! | TGATAAGTTTAAAACCATTG+TGG | + | chr4_1:50555017-50555036 | Msa0553430:CDS | 25.0% |
| ! | GAATTAATCACATATTCTGA+AGG | + | chr4_1:50555123-50555142 | Msa0553430:CDS | 25.0% |
| !!! | TTGTTTACTAGTTGTTTTGA+TGG | - | chr4_1:50553947-50553966 | None:intergenic | 25.0% |
| ! | ATAACACCAAATAAAGAAGT+AGG | - | chr4_1:50554187-50554206 | None:intergenic | 25.0% |
| !!! | CTTTATTTGGTGTTATCAAA+AGG | + | chr4_1:50554191-50554210 | Msa0553430:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_1:50554551-50554570 | Msa0553430:CDS | 25.0% |
| ! | AAAGGGTTTATCTGAAAATA+CGG | + | chr4_1:50554585-50554604 | Msa0553430:CDS | 25.0% |
| ! | TTACTATTACCAATCAAAAG+TGG | - | chr4_1:50554613-50554632 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGAGTCTGTTT+CGG | + | chr4_1:50554627-50554646 | Msa0553430:CDS | 25.0% |
| !! | ATTTTCGTATTTACCATTGA+TGG | + | chr4_1:50554744-50554763 | Msa0553430:CDS | 25.0% |
| !! | TTTTCGTATTTACCATTGAT+GGG | + | chr4_1:50554745-50554764 | Msa0553430:CDS | 25.0% |
| !! | TGATAAGTTTAAAACCATTG+TGG | + | chr4_1:50555017-50555036 | Msa0553430:CDS | 25.0% |
| ! | GAATTAATCACATATTCTGA+AGG | + | chr4_1:50555123-50555142 | Msa0553430:CDS | 25.0% |
| AGAAGAGAGAATGTAAACTA+GGG | - | chr4_1:50554032-50554051 | None:intergenic | 30.0% | |
| !!! | TTTTGATGATGATGATGAAG+AGG | + | chr4_1:50554147-50554166 | Msa0553430:CDS | 30.0% |
| ! | AGGTGTTTCGTTGATAAAAT+TGG | + | chr4_1:50554211-50554230 | Msa0553430:CDS | 30.0% |
| !! | TTGCTGGTTATTTTGTTCTT+AGG | + | chr4_1:50554254-50554273 | Msa0553430:CDS | 30.0% |
| !! | TGCTGGTTATTTTGTTCTTA+GGG | + | chr4_1:50554255-50554274 | Msa0553430:CDS | 30.0% |
| ! | TTTGTTCTTAGGGAGATTTT+TGG | + | chr4_1:50554265-50554284 | Msa0553430:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGCTATAA+TGG | + | chr4_1:50554280-50554299 | Msa0553430:CDS | 30.0% |
| ! | GATGATGATGATAATGATTC+TGG | + | chr4_1:50554424-50554443 | Msa0553430:CDS | 30.0% |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_1:50554555-50554574 | Msa0553430:CDS | 30.0% | |
| ! | TAGAATAGCTTTACATGATG+AGG | + | chr4_1:50554879-50554898 | Msa0553430:CDS | 30.0% |
| ! | AGAATAGCTTTACATGATGA+GGG | + | chr4_1:50554880-50554899 | Msa0553430:CDS | 30.0% |
| !!! | TGGTTTTAAACTTATCAGTC+TGG | - | chr4_1:50555014-50555033 | None:intergenic | 30.0% |
| ! | ATCACATATTCTGAAGGTAA+CGG | + | chr4_1:50555129-50555148 | Msa0553430:CDS | 30.0% |
| AGAAGAGAGAATGTAAACTA+GGG | - | chr4_1:50554032-50554051 | None:intergenic | 30.0% | |
| !!! | TTTTGATGATGATGATGAAG+AGG | + | chr4_1:50554147-50554166 | Msa0553430:CDS | 30.0% |
| ! | AGGTGTTTCGTTGATAAAAT+TGG | + | chr4_1:50554211-50554230 | Msa0553430:CDS | 30.0% |
| !! | TTGCTGGTTATTTTGTTCTT+AGG | + | chr4_1:50554254-50554273 | Msa0553430:CDS | 30.0% |
| !! | TGCTGGTTATTTTGTTCTTA+GGG | + | chr4_1:50554255-50554274 | Msa0553430:CDS | 30.0% |
| ! | TTTGTTCTTAGGGAGATTTT+TGG | + | chr4_1:50554265-50554284 | Msa0553430:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGCTATAA+TGG | + | chr4_1:50554280-50554299 | Msa0553430:CDS | 30.0% |
| ! | GATGATGATGATAATGATTC+TGG | + | chr4_1:50554424-50554443 | Msa0553430:CDS | 30.0% |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_1:50554555-50554574 | Msa0553430:CDS | 30.0% | |
| ! | TAGAATAGCTTTACATGATG+AGG | + | chr4_1:50554879-50554898 | Msa0553430:CDS | 30.0% |
| ! | AGAATAGCTTTACATGATGA+GGG | + | chr4_1:50554880-50554899 | Msa0553430:CDS | 30.0% |
| !!! | TGGTTTTAAACTTATCAGTC+TGG | - | chr4_1:50555014-50555033 | None:intergenic | 30.0% |
| ! | ATCACATATTCTGAAGGTAA+CGG | + | chr4_1:50555129-50555148 | Msa0553430:CDS | 30.0% |
| TATCCAAGCTACAAAACCTA+TGG | + | chr4_1:50553888-50553907 | Msa0553430:CDS | 35.0% | |
| TACAAACTGCTTAGTGTGAT+CGG | - | chr4_1:50553981-50554000 | None:intergenic | 35.0% | |
| GAGAAGAGAGAATGTAAACT+AGG | - | chr4_1:50554033-50554052 | None:intergenic | 35.0% | |
| CTGTTATTGTTCAAGCTGAT+TGG | + | chr4_1:50554116-50554135 | Msa0553430:CDS | 35.0% | |
| GAGCTACCTACTTCTTTATT+TGG | + | chr4_1:50554178-50554197 | Msa0553430:CDS | 35.0% | |
| ! | TGGCTATAATGGTCATGTTT+TGG | + | chr4_1:50554291-50554310 | Msa0553430:CDS | 35.0% |
| !!! | TCATGTTTTGGCTGCTAAAA+AGG | + | chr4_1:50554303-50554322 | Msa0553430:CDS | 35.0% |
| CTATCGTCAGAAAAAGTTTC+TGG | - | chr4_1:50554373-50554392 | None:intergenic | 35.0% | |
| ! | TGTTAGGATGGTGTTGAAAA+AGG | + | chr4_1:50554567-50554586 | Msa0553430:CDS | 35.0% |
| ! | GTTAGGATGGTGTTGAAAAA+GGG | + | chr4_1:50554568-50554587 | Msa0553430:CDS | 35.0% |
| !! | AATACGGATCCACTTTTGAT+TGG | + | chr4_1:50554601-50554620 | Msa0553430:CDS | 35.0% |
| TAAAAATGAGTCTGTTTCGG+AGG | + | chr4_1:50554630-50554649 | Msa0553430:CDS | 35.0% | |
| TATATAGACTGTGCAAATGC+AGG | - | chr4_1:50554697-50554716 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_1:50554793-50554812 | Msa0553430:CDS | 35.0% | |
| ! | GAATAGCTTTACATGATGAG+GGG | + | chr4_1:50554881-50554900 | Msa0553430:CDS | 35.0% |
| GTACTCAATCTTATTCGACT+TGG | - | chr4_1:50554935-50554954 | None:intergenic | 35.0% | |
| CTAGTGTCTTATCAGATATC+AGG | + | chr4_1:50555052-50555071 | Msa0553430:CDS | 35.0% | |
| TATCAGATATCAGGAAACAC+TGG | + | chr4_1:50555061-50555080 | Msa0553430:CDS | 35.0% | |
| ATCAGATATCAGGAAACACT+GGG | + | chr4_1:50555062-50555081 | Msa0553430:CDS | 35.0% | |
| ! | TCACATATTCTGAAGGTAAC+GGG | + | chr4_1:50555130-50555149 | Msa0553430:CDS | 35.0% |
| TATCCAAGCTACAAAACCTA+TGG | + | chr4_1:50553888-50553907 | Msa0553430:CDS | 35.0% | |
| TACAAACTGCTTAGTGTGAT+CGG | - | chr4_1:50553981-50554000 | None:intergenic | 35.0% | |
| GAGAAGAGAGAATGTAAACT+AGG | - | chr4_1:50554033-50554052 | None:intergenic | 35.0% | |
| CTGTTATTGTTCAAGCTGAT+TGG | + | chr4_1:50554116-50554135 | Msa0553430:CDS | 35.0% | |
| GAGCTACCTACTTCTTTATT+TGG | + | chr4_1:50554178-50554197 | Msa0553430:CDS | 35.0% | |
| ! | TGGCTATAATGGTCATGTTT+TGG | + | chr4_1:50554291-50554310 | Msa0553430:CDS | 35.0% |
| !!! | TCATGTTTTGGCTGCTAAAA+AGG | + | chr4_1:50554303-50554322 | Msa0553430:CDS | 35.0% |
| CTATCGTCAGAAAAAGTTTC+TGG | - | chr4_1:50554373-50554392 | None:intergenic | 35.0% | |
| ! | TGTTAGGATGGTGTTGAAAA+AGG | + | chr4_1:50554567-50554586 | Msa0553430:CDS | 35.0% |
| ! | GTTAGGATGGTGTTGAAAAA+GGG | + | chr4_1:50554568-50554587 | Msa0553430:CDS | 35.0% |
| !! | AATACGGATCCACTTTTGAT+TGG | + | chr4_1:50554601-50554620 | Msa0553430:CDS | 35.0% |
| TAAAAATGAGTCTGTTTCGG+AGG | + | chr4_1:50554630-50554649 | Msa0553430:CDS | 35.0% | |
| TATATAGACTGTGCAAATGC+AGG | - | chr4_1:50554697-50554716 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_1:50554793-50554812 | Msa0553430:CDS | 35.0% | |
| ! | GAATAGCTTTACATGATGAG+GGG | + | chr4_1:50554881-50554900 | Msa0553430:CDS | 35.0% |
| GTACTCAATCTTATTCGACT+TGG | - | chr4_1:50554935-50554954 | None:intergenic | 35.0% | |
| CTAGTGTCTTATCAGATATC+AGG | + | chr4_1:50555052-50555071 | Msa0553430:CDS | 35.0% | |
| TATCAGATATCAGGAAACAC+TGG | + | chr4_1:50555061-50555080 | Msa0553430:CDS | 35.0% | |
| ATCAGATATCAGGAAACACT+GGG | + | chr4_1:50555062-50555081 | Msa0553430:CDS | 35.0% | |
| ! | TCACATATTCTGAAGGTAAC+GGG | + | chr4_1:50555130-50555149 | Msa0553430:CDS | 35.0% |
| TCGAAATGGAGTGTAGAGAA+TGG | - | chr4_1:50553914-50553933 | None:intergenic | 40.0% | |
| ! | ATGGTTTGAGTTCGTCGAAA+TGG | - | chr4_1:50553928-50553947 | None:intergenic | 40.0% |
| ACAAACTGCTTAGTGTGATC+GGG | - | chr4_1:50553980-50553999 | None:intergenic | 40.0% | |
| TAAACTAGGGACTGTGTTTC+AGG | - | chr4_1:50554019-50554038 | None:intergenic | 40.0% | |
| CGGAACATGATTGTTCTGAT+AGG | - | chr4_1:50554060-50554079 | None:intergenic | 40.0% | |
| GCTTGAACAATAACAGCATC+AGG | - | chr4_1:50554112-50554131 | None:intergenic | 40.0% | |
| TTGGTAGAGATGAGTATGAG+AGG | + | chr4_1:50554230-50554249 | Msa0553430:CDS | 40.0% | |
| TGGTAGAGATGAGTATGAGA+GGG | + | chr4_1:50554231-50554250 | Msa0553430:CDS | 40.0% | |
| !!! | CTTAGGGAGATTTTTGGTAC+TGG | + | chr4_1:50554271-50554290 | Msa0553430:CDS | 40.0% |
| AAAAAGGCTGCCAAAGATGT+TGG | + | chr4_1:50554319-50554338 | Msa0553430:CDS | 40.0% | |
| AAACTCCGAACCAACATCTT+TGG | - | chr4_1:50554332-50554351 | None:intergenic | 40.0% | |
| ! | TCGTCAGAAAAAGTTTCTGG+AGG | - | chr4_1:50554370-50554389 | None:intergenic | 40.0% |
| ! | GCAACTTCTTTGGCTTCAAT+TGG | + | chr4_1:50554517-50554536 | Msa0553430:CDS | 40.0% |
| !! | TGGCTTCAATTGGTTTGAAG+AGG | + | chr4_1:50554527-50554546 | Msa0553430:CDS | 40.0% |
| ACATGCACAGAAGATGTTGT+TGG | + | chr4_1:50554780-50554799 | Msa0553430:CDS | 40.0% | |
| TGATGTTAAGACTGTCTCTG+AGG | + | chr4_1:50554825-50554844 | Msa0553430:CDS | 40.0% | |
| ! | CACATATTCTGAAGGTAACG+GGG | + | chr4_1:50555131-50555150 | Msa0553430:CDS | 40.0% |
| !! | AACGGGGCTAGTTTAAATCA+TGG | + | chr4_1:50555147-50555166 | Msa0553430:CDS | 40.0% |
| TGACAGCAAGCAGTTGTTTA+CGG | + | chr4_1:50555170-50555189 | Msa0553430:CDS | 40.0% | |
| ! | GTTGTTTACGGATAGTTCTG+TGG | + | chr4_1:50555182-50555201 | Msa0553430:CDS | 40.0% |
| CGGATAATAGTTTCTGCATC+TGG | - | chr4_1:50555332-50555351 | None:intergenic | 40.0% | |
| AAACTATTATCCGTTGCCCT+TGG | + | chr4_1:50555339-50555358 | Msa0553430:CDS | 40.0% | |
| TTAAGATGAACCAAGGGCAA+CGG | - | chr4_1:50555352-50555371 | None:intergenic | 40.0% | |
| TCGAAATGGAGTGTAGAGAA+TGG | - | chr4_1:50553914-50553933 | None:intergenic | 40.0% | |
| ! | ATGGTTTGAGTTCGTCGAAA+TGG | - | chr4_1:50553928-50553947 | None:intergenic | 40.0% |
| ACAAACTGCTTAGTGTGATC+GGG | - | chr4_1:50553980-50553999 | None:intergenic | 40.0% | |
| TAAACTAGGGACTGTGTTTC+AGG | - | chr4_1:50554019-50554038 | None:intergenic | 40.0% | |
| CGGAACATGATTGTTCTGAT+AGG | - | chr4_1:50554060-50554079 | None:intergenic | 40.0% | |
| GCTTGAACAATAACAGCATC+AGG | - | chr4_1:50554112-50554131 | None:intergenic | 40.0% | |
| TTGGTAGAGATGAGTATGAG+AGG | + | chr4_1:50554230-50554249 | Msa0553430:CDS | 40.0% | |
| TGGTAGAGATGAGTATGAGA+GGG | + | chr4_1:50554231-50554250 | Msa0553430:CDS | 40.0% | |
| !!! | CTTAGGGAGATTTTTGGTAC+TGG | + | chr4_1:50554271-50554290 | Msa0553430:CDS | 40.0% |
| AAAAAGGCTGCCAAAGATGT+TGG | + | chr4_1:50554319-50554338 | Msa0553430:CDS | 40.0% | |
| AAACTCCGAACCAACATCTT+TGG | - | chr4_1:50554332-50554351 | None:intergenic | 40.0% | |
| ! | TCGTCAGAAAAAGTTTCTGG+AGG | - | chr4_1:50554370-50554389 | None:intergenic | 40.0% |
| ! | GCAACTTCTTTGGCTTCAAT+TGG | + | chr4_1:50554517-50554536 | Msa0553430:CDS | 40.0% |
| !! | TGGCTTCAATTGGTTTGAAG+AGG | + | chr4_1:50554527-50554546 | Msa0553430:CDS | 40.0% |
| ACATGCACAGAAGATGTTGT+TGG | + | chr4_1:50554780-50554799 | Msa0553430:CDS | 40.0% | |
| TGATGTTAAGACTGTCTCTG+AGG | + | chr4_1:50554825-50554844 | Msa0553430:CDS | 40.0% | |
| ! | CACATATTCTGAAGGTAACG+GGG | + | chr4_1:50555131-50555150 | Msa0553430:CDS | 40.0% |
| !! | AACGGGGCTAGTTTAAATCA+TGG | + | chr4_1:50555147-50555166 | Msa0553430:CDS | 40.0% |
| TGACAGCAAGCAGTTGTTTA+CGG | + | chr4_1:50555170-50555189 | Msa0553430:CDS | 40.0% | |
| ! | GTTGTTTACGGATAGTTCTG+TGG | + | chr4_1:50555182-50555201 | Msa0553430:CDS | 40.0% |
| CGGATAATAGTTTCTGCATC+TGG | - | chr4_1:50555332-50555351 | None:intergenic | 40.0% | |
| AAACTATTATCCGTTGCCCT+TGG | + | chr4_1:50555339-50555358 | Msa0553430:CDS | 40.0% | |
| TTAAGATGAACCAAGGGCAA+CGG | - | chr4_1:50555352-50555371 | None:intergenic | 40.0% | |
| !! | TGGCCATAGGTTTTGTAGCT+TGG | - | chr4_1:50553894-50553913 | None:intergenic | 45.0% |
| CAAACTGCTTAGTGTGATCG+GGG | - | chr4_1:50553979-50553998 | None:intergenic | 45.0% | |
| ATTGATGAGTTCACGCGCAT+CGG | - | chr4_1:50554080-50554099 | None:intergenic | 45.0% | |
| !!! | AGTTTTGTTCCTCAGCAGCA+AGG | + | chr4_1:50554490-50554509 | Msa0553430:CDS | 45.0% |
| AAATGAGTCTGTTTCGGAGG+CGG | + | chr4_1:50554633-50554652 | Msa0553430:CDS | 45.0% | |
| ! | GGAGCATCATAACTAGCTGT+TGG | - | chr4_1:50554676-50554695 | None:intergenic | 45.0% |
| GCTAACGCATTACCCATCAA+TGG | - | chr4_1:50554760-50554779 | None:intergenic | 45.0% | |
| GTTGGATGTGAATAGAGGAG+AGG | + | chr4_1:50554798-50554817 | Msa0553430:CDS | 45.0% | |
| ! | TACTTTCCGATTTGCCGTAG+AGG | + | chr4_1:50554852-50554871 | Msa0553430:CDS | 45.0% |
| ! | ACTTTCCGATTTGCCGTAGA+GGG | + | chr4_1:50554853-50554872 | Msa0553430:CDS | 45.0% |
| AGCTATTCTAAGCCCCTCTA+CGG | - | chr4_1:50554869-50554888 | None:intergenic | 45.0% | |
| ATTGAGTACTCAGAGCTTCC+AGG | + | chr4_1:50554946-50554965 | Msa0553430:CDS | 45.0% | |
| GTGTAAACATCACTTGTGCC+TGG | - | chr4_1:50554978-50554997 | None:intergenic | 45.0% | |
| GGCACAAGTGATGTTTACAC+AGG | + | chr4_1:50554978-50554997 | Msa0553430:CDS | 45.0% | |
| CTTATCAGTCTGGCTACGAA+TGG | - | chr4_1:50555004-50555023 | None:intergenic | 45.0% | |
| AGCATCAACTACTGCCACAA+TGG | - | chr4_1:50555034-50555053 | None:intergenic | 45.0% | |
| TCTTTAAGCTCACCAGGAAG+CGG | - | chr4_1:50555093-50555112 | None:intergenic | 45.0% | |
| AGAACCTCTTTAAGCTCACC+AGG | - | chr4_1:50555099-50555118 | None:intergenic | 45.0% | |
| GGTGAGCTTAAAGAGGTTCT+TGG | + | chr4_1:50555099-50555118 | Msa0553430:CDS | 45.0% | |
| ! | GTTTACGGATAGTTCTGTGG+TGG | + | chr4_1:50555185-50555204 | Msa0553430:CDS | 45.0% |
| ! | ATAGTTCTGTGGTGGCAGTT+GGG | + | chr4_1:50555193-50555212 | Msa0553430:CDS | 45.0% |
| AGTACGATCTTGAGAGAAGC+TGG | - | chr4_1:50555306-50555325 | None:intergenic | 45.0% | |
| !! | TGGCCATAGGTTTTGTAGCT+TGG | - | chr4_1:50553894-50553913 | None:intergenic | 45.0% |
| CAAACTGCTTAGTGTGATCG+GGG | - | chr4_1:50553979-50553998 | None:intergenic | 45.0% | |
| ATTGATGAGTTCACGCGCAT+CGG | - | chr4_1:50554080-50554099 | None:intergenic | 45.0% | |
| !!! | AGTTTTGTTCCTCAGCAGCA+AGG | + | chr4_1:50554490-50554509 | Msa0553430:CDS | 45.0% |
| AAATGAGTCTGTTTCGGAGG+CGG | + | chr4_1:50554633-50554652 | Msa0553430:CDS | 45.0% | |
| ! | GGAGCATCATAACTAGCTGT+TGG | - | chr4_1:50554676-50554695 | None:intergenic | 45.0% |
| GCTAACGCATTACCCATCAA+TGG | - | chr4_1:50554760-50554779 | None:intergenic | 45.0% | |
| GTTGGATGTGAATAGAGGAG+AGG | + | chr4_1:50554798-50554817 | Msa0553430:CDS | 45.0% | |
| ! | TACTTTCCGATTTGCCGTAG+AGG | + | chr4_1:50554852-50554871 | Msa0553430:CDS | 45.0% |
| ! | ACTTTCCGATTTGCCGTAGA+GGG | + | chr4_1:50554853-50554872 | Msa0553430:CDS | 45.0% |
| AGCTATTCTAAGCCCCTCTA+CGG | - | chr4_1:50554869-50554888 | None:intergenic | 45.0% | |
| ATTGAGTACTCAGAGCTTCC+AGG | + | chr4_1:50554946-50554965 | Msa0553430:CDS | 45.0% | |
| GTGTAAACATCACTTGTGCC+TGG | - | chr4_1:50554978-50554997 | None:intergenic | 45.0% | |
| GGCACAAGTGATGTTTACAC+AGG | + | chr4_1:50554978-50554997 | Msa0553430:CDS | 45.0% | |
| CTTATCAGTCTGGCTACGAA+TGG | - | chr4_1:50555004-50555023 | None:intergenic | 45.0% | |
| AGCATCAACTACTGCCACAA+TGG | - | chr4_1:50555034-50555053 | None:intergenic | 45.0% | |
| TCTTTAAGCTCACCAGGAAG+CGG | - | chr4_1:50555093-50555112 | None:intergenic | 45.0% | |
| AGAACCTCTTTAAGCTCACC+AGG | - | chr4_1:50555099-50555118 | None:intergenic | 45.0% | |
| GGTGAGCTTAAAGAGGTTCT+TGG | + | chr4_1:50555099-50555118 | Msa0553430:CDS | 45.0% | |
| ! | GTTTACGGATAGTTCTGTGG+TGG | + | chr4_1:50555185-50555204 | Msa0553430:CDS | 45.0% |
| ! | ATAGTTCTGTGGTGGCAGTT+GGG | + | chr4_1:50555193-50555212 | Msa0553430:CDS | 45.0% |
| AGTACGATCTTGAGAGAAGC+TGG | - | chr4_1:50555306-50555325 | None:intergenic | 45.0% | |
| GGAGTGTAGAGAATGGCCAT+AGG | - | chr4_1:50553907-50553926 | None:intergenic | 50.0% | |
| GATGAGTATGAGAGGGTTGC+TGG | + | chr4_1:50554238-50554257 | Msa0553430:CDS | 50.0% | |
| ! | GGCTGCCAAAGATGTTGGTT+CGG | + | chr4_1:50554324-50554343 | Msa0553430:CDS | 50.0% |
| !! | GCAAGGTGCTGCAACTTCTT+TGG | + | chr4_1:50554507-50554526 | Msa0553430:CDS | 50.0% |
| AATGAGTCTGTTTCGGAGGC+GGG | + | chr4_1:50554634-50554653 | Msa0553430:CDS | 50.0% | |
| ! | CTTTCCGATTTGCCGTAGAG+GGG | + | chr4_1:50554854-50554873 | Msa0553430:CDS | 50.0% |
| TAAGCCCCTCTACGGCAAAT+CGG | - | chr4_1:50554861-50554880 | None:intergenic | 50.0% | |
| GCTTCCTGGTGAGCTTAAAG+AGG | + | chr4_1:50555092-50555111 | Msa0553430:CDS | 50.0% | |
| ! | GATAGTTCTGTGGTGGCAGT+TGG | + | chr4_1:50555192-50555211 | Msa0553430:CDS | 50.0% |
| ! | TAGTTCTGTGGTGGCAGTTG+GGG | + | chr4_1:50555194-50555213 | Msa0553430:CDS | 50.0% |
| ! | GCTGGAGCAACAGCAGTTTT+AGG | + | chr4_1:50555216-50555235 | Msa0553430:CDS | 50.0% |
| GGAGTGTAGAGAATGGCCAT+AGG | - | chr4_1:50553907-50553926 | None:intergenic | 50.0% | |
| GATGAGTATGAGAGGGTTGC+TGG | + | chr4_1:50554238-50554257 | Msa0553430:CDS | 50.0% | |
| ! | GGCTGCCAAAGATGTTGGTT+CGG | + | chr4_1:50554324-50554343 | Msa0553430:CDS | 50.0% |
| !! | GCAAGGTGCTGCAACTTCTT+TGG | + | chr4_1:50554507-50554526 | Msa0553430:CDS | 50.0% |
| AATGAGTCTGTTTCGGAGGC+GGG | + | chr4_1:50554634-50554653 | Msa0553430:CDS | 50.0% | |
| ! | CTTTCCGATTTGCCGTAGAG+GGG | + | chr4_1:50554854-50554873 | Msa0553430:CDS | 50.0% |
| TAAGCCCCTCTACGGCAAAT+CGG | - | chr4_1:50554861-50554880 | None:intergenic | 50.0% | |
| GCTTCCTGGTGAGCTTAAAG+AGG | + | chr4_1:50555092-50555111 | Msa0553430:CDS | 50.0% | |
| ! | GATAGTTCTGTGGTGGCAGT+TGG | + | chr4_1:50555192-50555211 | Msa0553430:CDS | 50.0% |
| ! | TAGTTCTGTGGTGGCAGTTG+GGG | + | chr4_1:50555194-50555213 | Msa0553430:CDS | 50.0% |
| ! | GCTGGAGCAACAGCAGTTTT+AGG | + | chr4_1:50555216-50555235 | Msa0553430:CDS | 50.0% |
| ATGCAGCCTGTTGGCGAGAA+AGG | + | chr4_1:50554904-50554923 | Msa0553430:CDS | 55.0% | |
| GAAACGCCTTTCTCGCCAAC+AGG | - | chr4_1:50554913-50554932 | None:intergenic | 55.0% | |
| AGAGCTTCCAGGTGATGTCC+AGG | + | chr4_1:50554957-50554976 | Msa0553430:CDS | 55.0% | |
| ACTTGTGCCTGGACATCACC+TGG | - | chr4_1:50554967-50554986 | None:intergenic | 55.0% | |
| AGGAGCTTCGTCTCTGACCA+AGG | + | chr4_1:50555236-50555255 | Msa0553430:CDS | 55.0% | |
| !! | CCTTTGTCAGCGTCGACATG+GGG | - | chr4_1:50555266-50555285 | None:intergenic | 55.0% |
| !! | GCCTTTGTCAGCGTCGACAT+GGG | - | chr4_1:50555267-50555286 | None:intergenic | 55.0% |
| !! | AGCCTTTGTCAGCGTCGACA+TGG | - | chr4_1:50555268-50555287 | None:intergenic | 55.0% |
| ATGCAGCCTGTTGGCGAGAA+AGG | + | chr4_1:50554904-50554923 | Msa0553430:CDS | 55.0% | |
| GAAACGCCTTTCTCGCCAAC+AGG | - | chr4_1:50554913-50554932 | None:intergenic | 55.0% | |
| AGAGCTTCCAGGTGATGTCC+AGG | + | chr4_1:50554957-50554976 | Msa0553430:CDS | 55.0% | |
| ACTTGTGCCTGGACATCACC+TGG | - | chr4_1:50554967-50554986 | None:intergenic | 55.0% | |
| AGGAGCTTCGTCTCTGACCA+AGG | + | chr4_1:50555236-50555255 | Msa0553430:CDS | 55.0% | |
| !! | CCTTTGTCAGCGTCGACATG+GGG | - | chr4_1:50555266-50555285 | None:intergenic | 55.0% |
| !! | GCCTTTGTCAGCGTCGACAT+GGG | - | chr4_1:50555267-50555286 | None:intergenic | 55.0% |
| !! | AGCCTTTGTCAGCGTCGACA+TGG | - | chr4_1:50555268-50555287 | None:intergenic | 55.0% |
| GTTGCAGCACCTTGCTGCTG+AGG | - | chr4_1:50554502-50554521 | None:intergenic | 60.0% | |
| ! | GTCTGTTTCGGAGGCGGGTT+CGG | + | chr4_1:50554639-50554658 | Msa0553430:CDS | 60.0% |
| GATGAGGGGATGCAGCCTGT+TGG | + | chr4_1:50554895-50554914 | Msa0553430:CDS | 60.0% | |
| CACTGGGATACTCCGCTTCC+TGG | + | chr4_1:50555078-50555097 | Msa0553430:CDS | 60.0% | |
| CGTCGACATGGGGACTACCT+TGG | - | chr4_1:50555256-50555275 | None:intergenic | 60.0% | |
| CCCCATGTCGACGCTGACAA+AGG | + | chr4_1:50555263-50555282 | Msa0553430:CDS | 60.0% | |
| GTTGCAGCACCTTGCTGCTG+AGG | - | chr4_1:50554502-50554521 | None:intergenic | 60.0% | |
| ! | GTCTGTTTCGGAGGCGGGTT+CGG | + | chr4_1:50554639-50554658 | Msa0553430:CDS | 60.0% |
| GATGAGGGGATGCAGCCTGT+TGG | + | chr4_1:50554895-50554914 | Msa0553430:CDS | 60.0% | |
| CACTGGGATACTCCGCTTCC+TGG | + | chr4_1:50555078-50555097 | Msa0553430:CDS | 60.0% | |
| CGTCGACATGGGGACTACCT+TGG | - | chr4_1:50555256-50555275 | None:intergenic | 60.0% | |
| CCCCATGTCGACGCTGACAA+AGG | + | chr4_1:50555263-50555282 | Msa0553430:CDS | 60.0% | |
| TCTGTGGTGGCAGTTGGGGC+TGG | + | chr4_1:50555198-50555217 | Msa0553430:CDS | 65.0% | |
| TCTGTGGTGGCAGTTGGGGC+TGG | + | chr4_1:50555198-50555217 | Msa0553430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 50553872 | 50555371 | 50553872 | ID=Msa0553430;Name=Msa0553430 |
| chr4_1 | mRNA | 50553872 | 50555371 | 50553872 | ID=Msa0553430-mRNA-1;Parent=Msa0553430;Name=Msa0553430-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|499 |
| chr4_1 | exon | 50553872 | 50555371 | 50553872 | ID=Msa0553430-mRNA-1:exon:14284;Parent=Msa0553430-mRNA-1 |
| chr4_1 | CDS | 50553872 | 50555371 | 50553872 | ID=Msa0553430-mRNA-1:cds;Parent=Msa0553430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
