Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647780 | XP_003607336.1 | 83.385 | 644 | 59 | 3 | 1 | 637 | 1 | 603 | 0.0 | 1042 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647780 | G7JQN1 | 83.385 | 644 | 59 | 3 | 1 | 637 | 1 | 603 | 0.0 | 1042 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647780 | Msa0690470 | 0.886428 | 3.448924e-72 | -8.615850e-47 |
| Msa0553430 | Msa0647780 | 0.813435 | 2.563338e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647780 | MtrunA17_Chr4g0039111 | 83.385 | 644 | 59 | 3 | 1 | 637 | 1 | 603 | 0.0 | 1042 |
| Msa0647780 | MtrunA17_Chr4g0039101 | 68.885 | 646 | 169 | 7 | 1 | 637 | 1 | 623 | 0.0 | 852 |
| Msa0647780 | MtrunA17_Chr4g0039091 | 67.816 | 87 | 28 | 0 | 549 | 635 | 1 | 87 | 2.39e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647780 | AT2G43250.1 | 46.215 | 634 | 317 | 8 | 5 | 632 | 6 | 621 | 0.0 | 533 |
Find 127 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTACCTACTTCTTTATT+TGG | 0.169176 | 4_3:+53860759 | Msa0647780:CDS |
| TAAACTAGGGACTGTGTTTC+AGG | 0.190651 | 4_3:-53860582 | None:intergenic |
| TGTTAGGATGGTGTTGAAAA+AGG | 0.228608 | 4_3:+53861121 | Msa0647780:CDS |
| TTGCCTTGGGCTACATTTGC+AGG | 0.246779 | 4_3:+53862115 | Msa0647780:CDS |
| GCAAGGTGCTGCAACTTCTT+TGG | 0.282101 | 4_3:+53861061 | Msa0647780:CDS |
| AGCGTGTTGGCTTCTTGCCT+TGG | 0.304013 | 4_3:+53862101 | Msa0647780:CDS |
| GATGATGATGATAATGATTC+TGG | 0.304630 | 4_3:+53860978 | Msa0647780:CDS |
| TGGCTATAATGGTCATGTTT+TGG | 0.310822 | 4_3:+53860872 | Msa0647780:CDS |
| GCTCCTGGATTTGCAACTTC+TGG | 0.314815 | 4_3:+53861932 | Msa0647780:CDS |
| AGGTGTTTCGTTGATAAAAT+TGG | 0.315113 | 4_3:+53860792 | Msa0647780:CDS |
| GATGAGTATGAGAGGGTTGC+TGG | 0.316031 | 4_3:+53860819 | Msa0647780:CDS |
| GTCTGTTTCGGAGGCGGGTT+CGG | 0.318325 | 4_3:+53861193 | Msa0647780:CDS |
| GCAACTTCTTTGGCTTCAAT+TGG | 0.322777 | 4_3:+53861071 | Msa0647780:CDS |
| CACTGGGATACTCCGCTTCC+TGG | 0.339484 | 4_3:+53861632 | Msa0647780:CDS |
| TTTCGATGAATAAAGATGTT+AGG | 0.339563 | 4_3:+53861105 | Msa0647780:CDS |
| CTTCATGAAAACCGATGATT+TGG | 0.341982 | 4_3:-53861957 | None:intergenic |
| GGTGAGCTTAAAGAGGTTCT+TGG | 0.343809 | 4_3:+53861653 | Msa0647780:CDS |
| AAATCTACGCAAGGCATCTA+AGG | 0.344087 | 4_3:+53862246 | Msa0647780:CDS |
| TCTGTGGTGGCAGTTGGGGC+TGG | 0.365844 | 4_3:+53861752 | Msa0647780:CDS |
| TTGAATTCCACGACCCAAAC+TGG | 0.370222 | 4_3:-53862224 | None:intergenic |
| TGACAGCAAGCAGTTGTTTA+CGG | 0.373345 | 4_3:+53861724 | Msa0647780:CDS |
| CTAGTGTCTTATCAGATATC+AGG | 0.379221 | 4_3:+53861606 | Msa0647780:CDS |
| GGCAGCATCGCAACTTGCAC+AGG | 0.383363 | 4_3:+53862136 | Msa0647780:CDS |
| TCATCTAAAGCTACGGCTCC+TGG | 0.394440 | 4_3:+53861917 | Msa0647780:CDS |
| ATGGTTTGAATTCGTCGAAA+TGG | 0.396953 | 4_3:-53860491 | None:intergenic |
| TCACATATTCTGAAGGTAAC+GGG | 0.398720 | 4_3:+53861684 | Msa0647780:CDS |
| ATTGAGTACTCAGAGCTTCC+AGG | 0.401163 | 4_3:+53861500 | Msa0647780:CDS |
| AAACTCCGAACCAACATCTT+TGG | 0.402577 | 4_3:-53860910 | None:intergenic |
| GCGTGTTGGCTTCTTGCCTT+GGG | 0.409038 | 4_3:+53862102 | Msa0647780:CDS |
| GAAACGCCTTTCTCGCCAAC+AGG | 0.412208 | 4_3:-53861464 | None:intergenic |
| CGGATAGTAGTTTCTGCATC+TGG | 0.414807 | 4_3:-53861883 | None:intergenic |
| ATGCAGCCTGTTGGCGAGAA+AGG | 0.418562 | 4_3:+53861458 | Msa0647780:CDS |
| ACAAACTGCTTAGTGTGATC+GGG | 0.423948 | 4_3:-53860543 | None:intergenic |
| CGGAACATGATTGTTCTGAT+AGG | 0.424487 | 4_3:-53860623 | None:intergenic |
| CTTTATTTGGTGTTATCAAA+AGG | 0.426684 | 4_3:+53860772 | Msa0647780:CDS |
| CTGTTATTGTTCAAGCTGAT+TGG | 0.431321 | 4_3:+53860682 | Msa0647780:CDS |
| AAAGAGTCTGTTTCGGAGGC+GGG | 0.432385 | 4_3:+53861188 | Msa0647780:CDS |
| GCTTGAACAATAACAGCATC+AGG | 0.435756 | 4_3:-53860675 | None:intergenic |
| ATAGTTCTGTGGTGGCAGTT+GGG | 0.436152 | 4_3:+53861747 | Msa0647780:CDS |
| AAAGGGTTTATCTGAAAATA+CGG | 0.437356 | 4_3:+53861139 | Msa0647780:CDS |
| GATAGTTCTGTGGTGGCAGT+TGG | 0.441768 | 4_3:+53861746 | Msa0647780:CDS |
| GGCTTGATTTACTATGAAGA+TGG | 0.453837 | 4_3:+53862157 | Msa0647780:CDS |
| GGCTGCCAAAGATGTTGGTT+CGG | 0.456595 | 4_3:+53860905 | Msa0647780:CDS |
| TATTCACAAAATCTCTAAAA+CGG | 0.463081 | 4_3:-53861022 | None:intergenic |
| TACAAACTGCTTAGTGTGAT+CGG | 0.465388 | 4_3:-53860544 | None:intergenic |
| TCAATTGCCAGTTTGGGTCG+TGG | 0.475526 | 4_3:+53862217 | Msa0647780:CDS |
| GCTCCAGAAGTTGCAAATCC+AGG | 0.476554 | 4_3:-53861935 | None:intergenic |
| TAAGCCCCTCTACGGCAAAT+CGG | 0.478190 | 4_3:-53861412 | None:intergenic |
| GAGAAGAGAGAATGTAAACT+AGG | 0.479814 | 4_3:-53860596 | None:intergenic |
| TTACTATTACCAATCAAAAG+TGG | 0.483777 | 4_3:-53861164 | None:intergenic |
| AGTACGATCTTGAGAGAAGC+TGG | 0.493091 | 4_3:-53861857 | None:intergenic |
| ACTTTCCGATTTGCCGTAGA+GGG | 0.493522 | 4_3:+53861407 | Msa0647780:CDS |
| GTAAACAGTATAAGGACAGC+AGG | 0.493787 | 4_3:+53862319 | Msa0647780:CDS |
| ATTGATGAGTTCACGCGCAT+CGG | 0.501516 | 4_3:-53860643 | None:intergenic |
| TGGCTTCAATTGGTTTGAAG+AGG | 0.502134 | 4_3:+53861081 | Msa0647780:CDS |
| TATATAGACTGTGCAAATGC+AGG | 0.502372 | 4_3:-53861248 | None:intergenic |
| CGACCCAAACTGGCAATTGA+GGG | 0.505588 | 4_3:-53862214 | None:intergenic |
| TAGAATAGCTTTACATGATG+AGG | 0.515895 | 4_3:+53861433 | Msa0647780:CDS |
| GTGTAAACATCACTTGTGCC+TGG | 0.516628 | 4_3:-53861529 | None:intergenic |
| AAAAGAGTCTGTTTCGGAGG+CGG | 0.517124 | 4_3:+53861187 | Msa0647780:CDS |
| GCCTTTGTCAGCGTCGACAT+GGG | 0.518045 | 4_3:-53861818 | None:intergenic |
| GCTTGATTTACTATGAAGAT+GGG | 0.519449 | 4_3:+53862158 | Msa0647780:CDS |
| CCTTGGTTCATCTAAAGCTA+CGG | 0.524603 | 4_3:+53861910 | Msa0647780:CDS |
| TATCCAAGCTACAAAACCTA+TGG | 0.524781 | 4_3:+53860454 | Msa0647780:CDS |
| AAACTACTATCCGTTGCCCT+TGG | 0.529028 | 4_3:+53861893 | Msa0647780:CDS |
| AGCCTTTGTCAGCGTCGACA+TGG | 0.529215 | 4_3:-53861819 | None:intergenic |
| ACGACCCAAACTGGCAATTG+AGG | 0.529521 | 4_3:-53862215 | None:intergenic |
| GTTGCAGCACCTTGCTGCTG+AGG | 0.529964 | 4_3:-53861053 | None:intergenic |
| AGAGCTTCCAGGTGATGTCC+AGG | 0.533423 | 4_3:+53861511 | Msa0647780:CDS |
| TATCAGATATCAGGAAACAC+TGG | 0.536180 | 4_3:+53861615 | Msa0647780:CDS |
| ACTTGTGCCTGGACATCACC+TGG | 0.536457 | 4_3:-53861518 | None:intergenic |
| TAGTTCTGTGGTGGCAGTTG+GGG | 0.537530 | 4_3:+53861748 | Msa0647780:CDS |
| GTACTCAATCTTATTCGACT+TGG | 0.537533 | 4_3:-53861486 | None:intergenic |
| TGGTAGAGATGAGTATGAGA+GGG | 0.538249 | 4_3:+53860812 | Msa0647780:CDS |
| AGAATAGCTTTACATGATGA+GGG | 0.540286 | 4_3:+53861434 | Msa0647780:CDS |
| AGAACCTCTTTAAGCTCACC+AGG | 0.545322 | 4_3:-53861650 | None:intergenic |
| ATAACACCAAATAAAGAAGT+AGG | 0.545666 | 4_3:-53860765 | None:intergenic |
| AGAAGAGAGAATGTAAACTA+GGG | 0.546637 | 4_3:-53860595 | None:intergenic |
| ATGTTGTTGGATGTGAATAG+AGG | 0.547789 | 4_3:+53861347 | Msa0647780:CDS |
| GGCTATGGCAACCTGAGTAA+TGG | 0.549586 | 4_3:-53862008 | None:intergenic |
| CGTCGACATGGGGACTACCT+TGG | 0.551635 | 4_3:-53861807 | None:intergenic |
| GCTTCCTGGTGAGCTTAAAG+AGG | 0.551773 | 4_3:+53861646 | Msa0647780:CDS |
| GATGAATAAAGATGTTAGGA+TGG | 0.552168 | 4_3:+53861109 | Msa0647780:CDS |
| ACATGCACAGAAGATGTTGT+TGG | 0.554385 | 4_3:+53861334 | Msa0647780:CDS |
| AACTTCTGGAGCCAAATCAT+CGG | 0.562407 | 4_3:+53861946 | Msa0647780:CDS |
| AACGGGGCTAGTTTAAATCA+TGG | 0.563180 | 4_3:+53861701 | Msa0647780:CDS |
| TCTTTAAGCTCACCAGGAAG+CGG | 0.563491 | 4_3:-53861644 | None:intergenic |
| AGCTATTCTAAGCCCCTCTA+CGG | 0.563581 | 4_3:-53861420 | None:intergenic |
| ATCACATATTCTGAAGGTAA+CGG | 0.567859 | 4_3:+53861683 | Msa0647780:CDS |
| GGAGCATCATAACTAGCTGT+TGG | 0.568658 | 4_3:-53861227 | None:intergenic |
| TTGGTAGAGATGAGTATGAG+AGG | 0.570361 | 4_3:+53860811 | Msa0647780:CDS |
| AGGAGCTTCGTCTCTGACCA+AGG | 0.573466 | 4_3:+53861790 | Msa0647780:CDS |
| AGGCGAAAGATTCAGCGTGT+TGG | 0.574368 | 4_3:+53862088 | Msa0647780:CDS |
| TACTTTCCGATTTGCCGTAG+AGG | 0.576011 | 4_3:+53861406 | Msa0647780:CDS |
| TCGAAATGGAGTGTAGAGAA+TGG | 0.577639 | 4_3:-53860477 | None:intergenic |
| GACCCAAACTGGCAATTGAG+GGG | 0.581848 | 4_3:-53862213 | None:intergenic |
| CCCCATGTCGACGCTGACAA+AGG | 0.592575 | 4_3:+53861817 | Msa0647780:CDS |
| TTTAGATGAACCAAGGGCAA+CGG | 0.597102 | 4_3:-53861903 | None:intergenic |
| GTTGTTTACGGATAGTTCTG+TGG | 0.604428 | 4_3:+53861736 | Msa0647780:CDS |
| CTTATCAGTCTGGCTACGAA+TGG | 0.609370 | 4_3:-53861555 | None:intergenic |
| CTGCCTGCAAATGTAGCCCA+AGG | 0.610402 | 4_3:-53862118 | None:intergenic |
| TGATGTTAAGACTGTCTCTG+AGG | 0.611028 | 4_3:+53861379 | Msa0647780:CDS |
| TAAACAGTATAAGGACAGCA+GGG | 0.613425 | 4_3:+53862320 | Msa0647780:CDS |
| AGCATCAACTACTGCCACAA+TGG | 0.614592 | 4_3:-53861585 | None:intergenic |
| GCTAACGCATTACCCATCAA+TGG | 0.615405 | 4_3:-53861311 | None:intergenic |
| AAGGCAGTAATGCAAACAGA+AGG | 0.621943 | 4_3:+53862265 | Msa0647780:CDS |
| AAAGATTAGAGCCATTACTC+AGG | 0.624579 | 4_3:+53861997 | Msa0647780:CDS |
| CACATATTCTGAAGGTAACG+GGG | 0.625070 | 4_3:+53861685 | Msa0647780:CDS |
| CTTTCCGATTTGCCGTAGAG+GGG | 0.626574 | 4_3:+53861408 | Msa0647780:CDS |
| TGGAATTCAAAATCTACGCA+AGG | 0.628926 | 4_3:+53862237 | Msa0647780:CDS |
| ATCAGATATCAGGAAACACT+GGG | 0.629051 | 4_3:+53861616 | Msa0647780:CDS |
| ACCCAAACTGGCAATTGAGG+GGG | 0.631842 | 4_3:-53862212 | None:intergenic |
| CCTTTGTCAGCGTCGACATG+GGG | 0.632576 | 4_3:-53861817 | None:intergenic |
| GAATTAATCACATATTCTGA+AGG | 0.634590 | 4_3:+53861677 | Msa0647780:CDS |
| GAATAGCTTTACATGATGAG+GGG | 0.637430 | 4_3:+53861435 | Msa0647780:CDS |
| TGATAAGTTTAAAACCATTG+TGG | 0.638774 | 4_3:+53861571 | Msa0647780:CDS |
| GTTTACGGATAGTTCTGTGG+TGG | 0.643321 | 4_3:+53861739 | Msa0647780:CDS |
| CCGTAGCTTTAGATGAACCA+AGG | 0.650188 | 4_3:-53861910 | None:intergenic |
| CAAACTGCTTAGTGTGATCG+GGG | 0.657065 | 4_3:-53860542 | None:intergenic |
| CGTAGCTTTAGATGAACCAA+GGG | 0.659199 | 4_3:-53861909 | None:intergenic |
| GATGAGGGGATGCAGCCTGT+TGG | 0.663325 | 4_3:+53861449 | Msa0647780:CDS |
| GGCACAAGTGATGTTTACAC+AGG | 0.664673 | 4_3:+53861532 | Msa0647780:CDS |
| GTTGGATGTGAATAGAGGAG+AGG | 0.665248 | 4_3:+53861352 | Msa0647780:CDS |
| CAGCATTCTATGACATAATG+CGG | 0.668940 | 4_3:+53862065 | Msa0647780:CDS |
| GGAGTGTAGAGAATGGCCAT+AGG | 0.668959 | 4_3:-53860470 | None:intergenic |
| CATTCTATGACATAATGCGG+AGG | 0.705567 | 4_3:+53862068 | Msa0647780:CDS |
| AAACAGTATAAGGACAGCAG+GGG | 0.706177 | 4_3:+53862321 | Msa0647780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCACAAAATCTCTAAAA+CGG | - | chr4_3:53861025-53861044 | None:intergenic | 20.0% |
| !!! | CAAAAGATTCTATTGATTTT+TGG | - | chr4_3:53862300-53862319 | None:intergenic | 20.0% |
| !!! | AATCTTTTGTAAACAGTATA+AGG | + | chr4_3:53862311-53862330 | Msa0647780:CDS | 20.0% |
| !!! | TATTCACAAAATCTCTAAAA+CGG | - | chr4_3:53861025-53861044 | None:intergenic | 20.0% |
| !!! | CAAAAGATTCTATTGATTTT+TGG | - | chr4_3:53862300-53862319 | None:intergenic | 20.0% |
| !!! | AATCTTTTGTAAACAGTATA+AGG | + | chr4_3:53862311-53862330 | Msa0647780:CDS | 20.0% |
| !!! | TTGTTTACTAGTTGTTTTGA+TGG | - | chr4_3:53860513-53860532 | None:intergenic | 25.0% |
| ! | ATAACACCAAATAAAGAAGT+AGG | - | chr4_3:53860768-53860787 | None:intergenic | 25.0% |
| !!! | CTTTATTTGGTGTTATCAAA+AGG | + | chr4_3:53860772-53860791 | Msa0647780:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_3:53861105-53861124 | Msa0647780:CDS | 25.0% |
| ! | AAAGGGTTTATCTGAAAATA+CGG | + | chr4_3:53861139-53861158 | Msa0647780:CDS | 25.0% |
| ! | TTACTATTACCAATCAAAAG+TGG | - | chr4_3:53861167-53861186 | None:intergenic | 25.0% |
| ! | TAGTAAAAAAGAGTCTGTTT+CGG | + | chr4_3:53861181-53861200 | Msa0647780:CDS | 25.0% |
| !! | ATTTTCGTATTTACCATTGA+TGG | + | chr4_3:53861298-53861317 | Msa0647780:CDS | 25.0% |
| !! | TTTTCGTATTTACCATTGAT+GGG | + | chr4_3:53861299-53861318 | Msa0647780:CDS | 25.0% |
| !! | TGATAAGTTTAAAACCATTG+TGG | + | chr4_3:53861571-53861590 | Msa0647780:CDS | 25.0% |
| ! | GAATTAATCACATATTCTGA+AGG | + | chr4_3:53861677-53861696 | Msa0647780:CDS | 25.0% |
| !!! | TTGTTTACTAGTTGTTTTGA+TGG | - | chr4_3:53860513-53860532 | None:intergenic | 25.0% |
| ! | ATAACACCAAATAAAGAAGT+AGG | - | chr4_3:53860768-53860787 | None:intergenic | 25.0% |
| !!! | CTTTATTTGGTGTTATCAAA+AGG | + | chr4_3:53860772-53860791 | Msa0647780:CDS | 25.0% |
| ! | TTTCGATGAATAAAGATGTT+AGG | + | chr4_3:53861105-53861124 | Msa0647780:CDS | 25.0% |
| ! | AAAGGGTTTATCTGAAAATA+CGG | + | chr4_3:53861139-53861158 | Msa0647780:CDS | 25.0% |
| ! | TTACTATTACCAATCAAAAG+TGG | - | chr4_3:53861167-53861186 | None:intergenic | 25.0% |
| ! | TAGTAAAAAAGAGTCTGTTT+CGG | + | chr4_3:53861181-53861200 | Msa0647780:CDS | 25.0% |
| !! | ATTTTCGTATTTACCATTGA+TGG | + | chr4_3:53861298-53861317 | Msa0647780:CDS | 25.0% |
| !! | TTTTCGTATTTACCATTGAT+GGG | + | chr4_3:53861299-53861318 | Msa0647780:CDS | 25.0% |
| !! | TGATAAGTTTAAAACCATTG+TGG | + | chr4_3:53861571-53861590 | Msa0647780:CDS | 25.0% |
| ! | GAATTAATCACATATTCTGA+AGG | + | chr4_3:53861677-53861696 | Msa0647780:CDS | 25.0% |
| AGAAGAGAGAATGTAAACTA+GGG | - | chr4_3:53860598-53860617 | None:intergenic | 30.0% | |
| ! | AGGTGTTTCGTTGATAAAAT+TGG | + | chr4_3:53860792-53860811 | Msa0647780:CDS | 30.0% |
| !! | TTGCTGGTTATTTTGTTCTT+AGG | + | chr4_3:53860835-53860854 | Msa0647780:CDS | 30.0% |
| !! | TGCTGGTTATTTTGTTCTTA+GGG | + | chr4_3:53860836-53860855 | Msa0647780:CDS | 30.0% |
| ! | TTTGTTCTTAGGGAGATTTT+TGG | + | chr4_3:53860846-53860865 | Msa0647780:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGCTATAA+TGG | + | chr4_3:53860861-53860880 | Msa0647780:CDS | 30.0% |
| ! | GATGATGATGATAATGATTC+TGG | + | chr4_3:53860978-53860997 | Msa0647780:CDS | 30.0% |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_3:53861109-53861128 | Msa0647780:CDS | 30.0% | |
| ! | TAGAATAGCTTTACATGATG+AGG | + | chr4_3:53861433-53861452 | Msa0647780:CDS | 30.0% |
| ! | AGAATAGCTTTACATGATGA+GGG | + | chr4_3:53861434-53861453 | Msa0647780:CDS | 30.0% |
| !!! | TGGTTTTAAACTTATCAGTC+TGG | - | chr4_3:53861568-53861587 | None:intergenic | 30.0% |
| ! | ATCACATATTCTGAAGGTAA+CGG | + | chr4_3:53861683-53861702 | Msa0647780:CDS | 30.0% |
| !!! | AAAACTAGTTTTTTCAGCAG+AGG | - | chr4_3:53862032-53862051 | None:intergenic | 30.0% |
| !!! | AAACTAGTTTTTCAACTCTG+AGG | + | chr4_3:53862041-53862060 | Msa0647780:CDS | 30.0% |
| GCTTGATTTACTATGAAGAT+GGG | + | chr4_3:53862158-53862177 | Msa0647780:CDS | 30.0% | |
| !!! | TTCTATTGATTTTTGGACTC+TGG | - | chr4_3:53862293-53862312 | None:intergenic | 30.0% |
| AGAAGAGAGAATGTAAACTA+GGG | - | chr4_3:53860598-53860617 | None:intergenic | 30.0% | |
| ! | AGGTGTTTCGTTGATAAAAT+TGG | + | chr4_3:53860792-53860811 | Msa0647780:CDS | 30.0% |
| !! | TTGCTGGTTATTTTGTTCTT+AGG | + | chr4_3:53860835-53860854 | Msa0647780:CDS | 30.0% |
| !! | TGCTGGTTATTTTGTTCTTA+GGG | + | chr4_3:53860836-53860855 | Msa0647780:CDS | 30.0% |
| ! | TTTGTTCTTAGGGAGATTTT+TGG | + | chr4_3:53860846-53860865 | Msa0647780:CDS | 30.0% |
| !!! | ATTTTTGGTACTGGCTATAA+TGG | + | chr4_3:53860861-53860880 | Msa0647780:CDS | 30.0% |
| ! | GATGATGATGATAATGATTC+TGG | + | chr4_3:53860978-53860997 | Msa0647780:CDS | 30.0% |
| GATGAATAAAGATGTTAGGA+TGG | + | chr4_3:53861109-53861128 | Msa0647780:CDS | 30.0% | |
| ! | TAGAATAGCTTTACATGATG+AGG | + | chr4_3:53861433-53861452 | Msa0647780:CDS | 30.0% |
| ! | AGAATAGCTTTACATGATGA+GGG | + | chr4_3:53861434-53861453 | Msa0647780:CDS | 30.0% |
| !!! | TGGTTTTAAACTTATCAGTC+TGG | - | chr4_3:53861568-53861587 | None:intergenic | 30.0% |
| ! | ATCACATATTCTGAAGGTAA+CGG | + | chr4_3:53861683-53861702 | Msa0647780:CDS | 30.0% |
| !!! | AAAACTAGTTTTTTCAGCAG+AGG | - | chr4_3:53862032-53862051 | None:intergenic | 30.0% |
| !!! | AAACTAGTTTTTCAACTCTG+AGG | + | chr4_3:53862041-53862060 | Msa0647780:CDS | 30.0% |
| GCTTGATTTACTATGAAGAT+GGG | + | chr4_3:53862158-53862177 | Msa0647780:CDS | 30.0% | |
| !!! | TTCTATTGATTTTTGGACTC+TGG | - | chr4_3:53862293-53862312 | None:intergenic | 30.0% |
| TATCCAAGCTACAAAACCTA+TGG | + | chr4_3:53860454-53860473 | Msa0647780:CDS | 35.0% | |
| ATGGTTTGAATTCGTCGAAA+TGG | - | chr4_3:53860494-53860513 | None:intergenic | 35.0% | |
| TACAAACTGCTTAGTGTGAT+CGG | - | chr4_3:53860547-53860566 | None:intergenic | 35.0% | |
| GAGAAGAGAGAATGTAAACT+AGG | - | chr4_3:53860599-53860618 | None:intergenic | 35.0% | |
| CTGTTATTGTTCAAGCTGAT+TGG | + | chr4_3:53860682-53860701 | Msa0647780:CDS | 35.0% | |
| ! | TGATGATGATGATGATGAAG+AGG | + | chr4_3:53860728-53860747 | Msa0647780:CDS | 35.0% |
| GAGCTACCTACTTCTTTATT+TGG | + | chr4_3:53860759-53860778 | Msa0647780:CDS | 35.0% | |
| ! | TGGCTATAATGGTCATGTTT+TGG | + | chr4_3:53860872-53860891 | Msa0647780:CDS | 35.0% |
| !!! | TCATGTTTTGGCTGCTAAAA+AGG | + | chr4_3:53860884-53860903 | Msa0647780:CDS | 35.0% |
| CTATCGTCAGAAAAAGTTTC+TGG | - | chr4_3:53860954-53860973 | None:intergenic | 35.0% | |
| ! | TGTTAGGATGGTGTTGAAAA+AGG | + | chr4_3:53861121-53861140 | Msa0647780:CDS | 35.0% |
| ! | GTTAGGATGGTGTTGAAAAA+GGG | + | chr4_3:53861122-53861141 | Msa0647780:CDS | 35.0% |
| !! | AATACGGATCCACTTTTGAT+TGG | + | chr4_3:53861155-53861174 | Msa0647780:CDS | 35.0% |
| TAAAAAAGAGTCTGTTTCGG+AGG | + | chr4_3:53861184-53861203 | Msa0647780:CDS | 35.0% | |
| TATATAGACTGTGCAAATGC+AGG | - | chr4_3:53861251-53861270 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_3:53861347-53861366 | Msa0647780:CDS | 35.0% | |
| ! | GAATAGCTTTACATGATGAG+GGG | + | chr4_3:53861435-53861454 | Msa0647780:CDS | 35.0% |
| GTACTCAATCTTATTCGACT+TGG | - | chr4_3:53861489-53861508 | None:intergenic | 35.0% | |
| CTAGTGTCTTATCAGATATC+AGG | + | chr4_3:53861606-53861625 | Msa0647780:CDS | 35.0% | |
| TATCAGATATCAGGAAACAC+TGG | + | chr4_3:53861615-53861634 | Msa0647780:CDS | 35.0% | |
| ATCAGATATCAGGAAACACT+GGG | + | chr4_3:53861616-53861635 | Msa0647780:CDS | 35.0% | |
| ! | TCACATATTCTGAAGGTAAC+GGG | + | chr4_3:53861684-53861703 | Msa0647780:CDS | 35.0% |
| CTTCATGAAAACCGATGATT+TGG | - | chr4_3:53861960-53861979 | None:intergenic | 35.0% | |
| AAAGATTAGAGCCATTACTC+AGG | + | chr4_3:53861997-53862016 | Msa0647780:CDS | 35.0% | |
| CAGCATTCTATGACATAATG+CGG | + | chr4_3:53862065-53862084 | Msa0647780:CDS | 35.0% | |
| GGCTTGATTTACTATGAAGA+TGG | + | chr4_3:53862157-53862176 | Msa0647780:CDS | 35.0% | |
| TGGAATTCAAAATCTACGCA+AGG | + | chr4_3:53862237-53862256 | Msa0647780:CDS | 35.0% | |
| TAAACAGTATAAGGACAGCA+GGG | + | chr4_3:53862320-53862339 | Msa0647780:CDS | 35.0% | |
| TATCCAAGCTACAAAACCTA+TGG | + | chr4_3:53860454-53860473 | Msa0647780:CDS | 35.0% | |
| ATGGTTTGAATTCGTCGAAA+TGG | - | chr4_3:53860494-53860513 | None:intergenic | 35.0% | |
| TACAAACTGCTTAGTGTGAT+CGG | - | chr4_3:53860547-53860566 | None:intergenic | 35.0% | |
| GAGAAGAGAGAATGTAAACT+AGG | - | chr4_3:53860599-53860618 | None:intergenic | 35.0% | |
| CTGTTATTGTTCAAGCTGAT+TGG | + | chr4_3:53860682-53860701 | Msa0647780:CDS | 35.0% | |
| ! | TGATGATGATGATGATGAAG+AGG | + | chr4_3:53860728-53860747 | Msa0647780:CDS | 35.0% |
| GAGCTACCTACTTCTTTATT+TGG | + | chr4_3:53860759-53860778 | Msa0647780:CDS | 35.0% | |
| ! | TGGCTATAATGGTCATGTTT+TGG | + | chr4_3:53860872-53860891 | Msa0647780:CDS | 35.0% |
| !!! | TCATGTTTTGGCTGCTAAAA+AGG | + | chr4_3:53860884-53860903 | Msa0647780:CDS | 35.0% |
| CTATCGTCAGAAAAAGTTTC+TGG | - | chr4_3:53860954-53860973 | None:intergenic | 35.0% | |
| ! | TGTTAGGATGGTGTTGAAAA+AGG | + | chr4_3:53861121-53861140 | Msa0647780:CDS | 35.0% |
| ! | GTTAGGATGGTGTTGAAAAA+GGG | + | chr4_3:53861122-53861141 | Msa0647780:CDS | 35.0% |
| !! | AATACGGATCCACTTTTGAT+TGG | + | chr4_3:53861155-53861174 | Msa0647780:CDS | 35.0% |
| TAAAAAAGAGTCTGTTTCGG+AGG | + | chr4_3:53861184-53861203 | Msa0647780:CDS | 35.0% | |
| TATATAGACTGTGCAAATGC+AGG | - | chr4_3:53861251-53861270 | None:intergenic | 35.0% | |
| ATGTTGTTGGATGTGAATAG+AGG | + | chr4_3:53861347-53861366 | Msa0647780:CDS | 35.0% | |
| ! | GAATAGCTTTACATGATGAG+GGG | + | chr4_3:53861435-53861454 | Msa0647780:CDS | 35.0% |
| GTACTCAATCTTATTCGACT+TGG | - | chr4_3:53861489-53861508 | None:intergenic | 35.0% | |
| CTAGTGTCTTATCAGATATC+AGG | + | chr4_3:53861606-53861625 | Msa0647780:CDS | 35.0% | |
| TATCAGATATCAGGAAACAC+TGG | + | chr4_3:53861615-53861634 | Msa0647780:CDS | 35.0% | |
| ATCAGATATCAGGAAACACT+GGG | + | chr4_3:53861616-53861635 | Msa0647780:CDS | 35.0% | |
| ! | TCACATATTCTGAAGGTAAC+GGG | + | chr4_3:53861684-53861703 | Msa0647780:CDS | 35.0% |
| CTTCATGAAAACCGATGATT+TGG | - | chr4_3:53861960-53861979 | None:intergenic | 35.0% | |
| AAAGATTAGAGCCATTACTC+AGG | + | chr4_3:53861997-53862016 | Msa0647780:CDS | 35.0% | |
| CAGCATTCTATGACATAATG+CGG | + | chr4_3:53862065-53862084 | Msa0647780:CDS | 35.0% | |
| GGCTTGATTTACTATGAAGA+TGG | + | chr4_3:53862157-53862176 | Msa0647780:CDS | 35.0% | |
| TGGAATTCAAAATCTACGCA+AGG | + | chr4_3:53862237-53862256 | Msa0647780:CDS | 35.0% | |
| TAAACAGTATAAGGACAGCA+GGG | + | chr4_3:53862320-53862339 | Msa0647780:CDS | 35.0% | |
| TCGAAATGGAGTGTAGAGAA+TGG | - | chr4_3:53860480-53860499 | None:intergenic | 40.0% | |
| ACAAACTGCTTAGTGTGATC+GGG | - | chr4_3:53860546-53860565 | None:intergenic | 40.0% | |
| TAAACTAGGGACTGTGTTTC+AGG | - | chr4_3:53860585-53860604 | None:intergenic | 40.0% | |
| CGGAACATGATTGTTCTGAT+AGG | - | chr4_3:53860626-53860645 | None:intergenic | 40.0% | |
| GCTTGAACAATAACAGCATC+AGG | - | chr4_3:53860678-53860697 | None:intergenic | 40.0% | |
| TTGGTAGAGATGAGTATGAG+AGG | + | chr4_3:53860811-53860830 | Msa0647780:CDS | 40.0% | |
| TGGTAGAGATGAGTATGAGA+GGG | + | chr4_3:53860812-53860831 | Msa0647780:CDS | 40.0% | |
| !!! | CTTAGGGAGATTTTTGGTAC+TGG | + | chr4_3:53860852-53860871 | Msa0647780:CDS | 40.0% |
| AAAAAGGCTGCCAAAGATGT+TGG | + | chr4_3:53860900-53860919 | Msa0647780:CDS | 40.0% | |
| AAACTCCGAACCAACATCTT+TGG | - | chr4_3:53860913-53860932 | None:intergenic | 40.0% | |
| ! | TCGTCAGAAAAAGTTTCTGG+AGG | - | chr4_3:53860951-53860970 | None:intergenic | 40.0% |
| ! | GCAACTTCTTTGGCTTCAAT+TGG | + | chr4_3:53861071-53861090 | Msa0647780:CDS | 40.0% |
| !! | TGGCTTCAATTGGTTTGAAG+AGG | + | chr4_3:53861081-53861100 | Msa0647780:CDS | 40.0% |
| ACATGCACAGAAGATGTTGT+TGG | + | chr4_3:53861334-53861353 | Msa0647780:CDS | 40.0% | |
| TGATGTTAAGACTGTCTCTG+AGG | + | chr4_3:53861379-53861398 | Msa0647780:CDS | 40.0% | |
| ! | CACATATTCTGAAGGTAACG+GGG | + | chr4_3:53861685-53861704 | Msa0647780:CDS | 40.0% |
| !! | AACGGGGCTAGTTTAAATCA+TGG | + | chr4_3:53861701-53861720 | Msa0647780:CDS | 40.0% |
| TGACAGCAAGCAGTTGTTTA+CGG | + | chr4_3:53861724-53861743 | Msa0647780:CDS | 40.0% | |
| ! | GTTGTTTACGGATAGTTCTG+TGG | + | chr4_3:53861736-53861755 | Msa0647780:CDS | 40.0% |
| TTTAGATGAACCAAGGGCAA+CGG | - | chr4_3:53861906-53861925 | None:intergenic | 40.0% | |
| !! | CGTAGCTTTAGATGAACCAA+GGG | - | chr4_3:53861912-53861931 | None:intergenic | 40.0% |
| ! | CCTTGGTTCATCTAAAGCTA+CGG | + | chr4_3:53861910-53861929 | Msa0647780:CDS | 40.0% |
| !! | AACTTCTGGAGCCAAATCAT+CGG | + | chr4_3:53861946-53861965 | Msa0647780:CDS | 40.0% |
| !!! | AGTTTTTTCAGCAGAGGCTA+TGG | - | chr4_3:53862026-53862045 | None:intergenic | 40.0% |
| CATTCTATGACATAATGCGG+AGG | + | chr4_3:53862068-53862087 | Msa0647780:CDS | 40.0% | |
| ! | AAATCTACGCAAGGCATCTA+AGG | + | chr4_3:53862246-53862265 | Msa0647780:CDS | 40.0% |
| AAGGCAGTAATGCAAACAGA+AGG | + | chr4_3:53862265-53862284 | Msa0647780:CDS | 40.0% | |
| GTAAACAGTATAAGGACAGC+AGG | + | chr4_3:53862319-53862338 | Msa0647780:CDS | 40.0% | |
| AAACAGTATAAGGACAGCAG+GGG | + | chr4_3:53862321-53862340 | Msa0647780:CDS | 40.0% | |
| TCGAAATGGAGTGTAGAGAA+TGG | - | chr4_3:53860480-53860499 | None:intergenic | 40.0% | |
| ACAAACTGCTTAGTGTGATC+GGG | - | chr4_3:53860546-53860565 | None:intergenic | 40.0% | |
| TAAACTAGGGACTGTGTTTC+AGG | - | chr4_3:53860585-53860604 | None:intergenic | 40.0% | |
| CGGAACATGATTGTTCTGAT+AGG | - | chr4_3:53860626-53860645 | None:intergenic | 40.0% | |
| GCTTGAACAATAACAGCATC+AGG | - | chr4_3:53860678-53860697 | None:intergenic | 40.0% | |
| TTGGTAGAGATGAGTATGAG+AGG | + | chr4_3:53860811-53860830 | Msa0647780:CDS | 40.0% | |
| TGGTAGAGATGAGTATGAGA+GGG | + | chr4_3:53860812-53860831 | Msa0647780:CDS | 40.0% | |
| !!! | CTTAGGGAGATTTTTGGTAC+TGG | + | chr4_3:53860852-53860871 | Msa0647780:CDS | 40.0% |
| AAAAAGGCTGCCAAAGATGT+TGG | + | chr4_3:53860900-53860919 | Msa0647780:CDS | 40.0% | |
| AAACTCCGAACCAACATCTT+TGG | - | chr4_3:53860913-53860932 | None:intergenic | 40.0% | |
| ! | TCGTCAGAAAAAGTTTCTGG+AGG | - | chr4_3:53860951-53860970 | None:intergenic | 40.0% |
| ! | GCAACTTCTTTGGCTTCAAT+TGG | + | chr4_3:53861071-53861090 | Msa0647780:CDS | 40.0% |
| !! | TGGCTTCAATTGGTTTGAAG+AGG | + | chr4_3:53861081-53861100 | Msa0647780:CDS | 40.0% |
| ACATGCACAGAAGATGTTGT+TGG | + | chr4_3:53861334-53861353 | Msa0647780:CDS | 40.0% | |
| TGATGTTAAGACTGTCTCTG+AGG | + | chr4_3:53861379-53861398 | Msa0647780:CDS | 40.0% | |
| ! | CACATATTCTGAAGGTAACG+GGG | + | chr4_3:53861685-53861704 | Msa0647780:CDS | 40.0% |
| !! | AACGGGGCTAGTTTAAATCA+TGG | + | chr4_3:53861701-53861720 | Msa0647780:CDS | 40.0% |
| TGACAGCAAGCAGTTGTTTA+CGG | + | chr4_3:53861724-53861743 | Msa0647780:CDS | 40.0% | |
| ! | GTTGTTTACGGATAGTTCTG+TGG | + | chr4_3:53861736-53861755 | Msa0647780:CDS | 40.0% |
| TTTAGATGAACCAAGGGCAA+CGG | - | chr4_3:53861906-53861925 | None:intergenic | 40.0% | |
| !! | CGTAGCTTTAGATGAACCAA+GGG | - | chr4_3:53861912-53861931 | None:intergenic | 40.0% |
| ! | CCTTGGTTCATCTAAAGCTA+CGG | + | chr4_3:53861910-53861929 | Msa0647780:CDS | 40.0% |
| !! | AACTTCTGGAGCCAAATCAT+CGG | + | chr4_3:53861946-53861965 | Msa0647780:CDS | 40.0% |
| !!! | AGTTTTTTCAGCAGAGGCTA+TGG | - | chr4_3:53862026-53862045 | None:intergenic | 40.0% |
| CATTCTATGACATAATGCGG+AGG | + | chr4_3:53862068-53862087 | Msa0647780:CDS | 40.0% | |
| ! | AAATCTACGCAAGGCATCTA+AGG | + | chr4_3:53862246-53862265 | Msa0647780:CDS | 40.0% |
| AAGGCAGTAATGCAAACAGA+AGG | + | chr4_3:53862265-53862284 | Msa0647780:CDS | 40.0% | |
| GTAAACAGTATAAGGACAGC+AGG | + | chr4_3:53862319-53862338 | Msa0647780:CDS | 40.0% | |
| AAACAGTATAAGGACAGCAG+GGG | + | chr4_3:53862321-53862340 | Msa0647780:CDS | 40.0% | |
| !! | TGGCCATAGGTTTTGTAGCT+TGG | - | chr4_3:53860460-53860479 | None:intergenic | 45.0% |
| CAAACTGCTTAGTGTGATCG+GGG | - | chr4_3:53860545-53860564 | None:intergenic | 45.0% | |
| ATTGATGAGTTCACGCGCAT+CGG | - | chr4_3:53860646-53860665 | None:intergenic | 45.0% | |
| !!! | AGTTTTGTTCCTCAGCAGCA+AGG | + | chr4_3:53861044-53861063 | Msa0647780:CDS | 45.0% |
| AAAAGAGTCTGTTTCGGAGG+CGG | + | chr4_3:53861187-53861206 | Msa0647780:CDS | 45.0% | |
| ! | GGAGCATCATAACTAGCTGT+TGG | - | chr4_3:53861230-53861249 | None:intergenic | 45.0% |
| GCTAACGCATTACCCATCAA+TGG | - | chr4_3:53861314-53861333 | None:intergenic | 45.0% | |
| GTTGGATGTGAATAGAGGAG+AGG | + | chr4_3:53861352-53861371 | Msa0647780:CDS | 45.0% | |
| ! | TACTTTCCGATTTGCCGTAG+AGG | + | chr4_3:53861406-53861425 | Msa0647780:CDS | 45.0% |
| ! | ACTTTCCGATTTGCCGTAGA+GGG | + | chr4_3:53861407-53861426 | Msa0647780:CDS | 45.0% |
| AGCTATTCTAAGCCCCTCTA+CGG | - | chr4_3:53861423-53861442 | None:intergenic | 45.0% | |
| ATTGAGTACTCAGAGCTTCC+AGG | + | chr4_3:53861500-53861519 | Msa0647780:CDS | 45.0% | |
| GTGTAAACATCACTTGTGCC+TGG | - | chr4_3:53861532-53861551 | None:intergenic | 45.0% | |
| GGCACAAGTGATGTTTACAC+AGG | + | chr4_3:53861532-53861551 | Msa0647780:CDS | 45.0% | |
| CTTATCAGTCTGGCTACGAA+TGG | - | chr4_3:53861558-53861577 | None:intergenic | 45.0% | |
| AGCATCAACTACTGCCACAA+TGG | - | chr4_3:53861588-53861607 | None:intergenic | 45.0% | |
| TCTTTAAGCTCACCAGGAAG+CGG | - | chr4_3:53861647-53861666 | None:intergenic | 45.0% | |
| AGAACCTCTTTAAGCTCACC+AGG | - | chr4_3:53861653-53861672 | None:intergenic | 45.0% | |
| GGTGAGCTTAAAGAGGTTCT+TGG | + | chr4_3:53861653-53861672 | Msa0647780:CDS | 45.0% | |
| ! | GTTTACGGATAGTTCTGTGG+TGG | + | chr4_3:53861739-53861758 | Msa0647780:CDS | 45.0% |
| ! | ATAGTTCTGTGGTGGCAGTT+GGG | + | chr4_3:53861747-53861766 | Msa0647780:CDS | 45.0% |
| AGTACGATCTTGAGAGAAGC+TGG | - | chr4_3:53861860-53861879 | None:intergenic | 45.0% | |
| CGGATAGTAGTTTCTGCATC+TGG | - | chr4_3:53861886-53861905 | None:intergenic | 45.0% | |
| AAACTACTATCCGTTGCCCT+TGG | + | chr4_3:53861893-53861912 | Msa0647780:CDS | 45.0% | |
| !! | CCGTAGCTTTAGATGAACCA+AGG | - | chr4_3:53861913-53861932 | None:intergenic | 45.0% |
| TTGAATTCCACGACCCAAAC+TGG | - | chr4_3:53862227-53862246 | None:intergenic | 45.0% | |
| !! | TGGCCATAGGTTTTGTAGCT+TGG | - | chr4_3:53860460-53860479 | None:intergenic | 45.0% |
| CAAACTGCTTAGTGTGATCG+GGG | - | chr4_3:53860545-53860564 | None:intergenic | 45.0% | |
| ATTGATGAGTTCACGCGCAT+CGG | - | chr4_3:53860646-53860665 | None:intergenic | 45.0% | |
| !!! | AGTTTTGTTCCTCAGCAGCA+AGG | + | chr4_3:53861044-53861063 | Msa0647780:CDS | 45.0% |
| AAAAGAGTCTGTTTCGGAGG+CGG | + | chr4_3:53861187-53861206 | Msa0647780:CDS | 45.0% | |
| ! | GGAGCATCATAACTAGCTGT+TGG | - | chr4_3:53861230-53861249 | None:intergenic | 45.0% |
| GCTAACGCATTACCCATCAA+TGG | - | chr4_3:53861314-53861333 | None:intergenic | 45.0% | |
| GTTGGATGTGAATAGAGGAG+AGG | + | chr4_3:53861352-53861371 | Msa0647780:CDS | 45.0% | |
| ! | TACTTTCCGATTTGCCGTAG+AGG | + | chr4_3:53861406-53861425 | Msa0647780:CDS | 45.0% |
| ! | ACTTTCCGATTTGCCGTAGA+GGG | + | chr4_3:53861407-53861426 | Msa0647780:CDS | 45.0% |
| AGCTATTCTAAGCCCCTCTA+CGG | - | chr4_3:53861423-53861442 | None:intergenic | 45.0% | |
| ATTGAGTACTCAGAGCTTCC+AGG | + | chr4_3:53861500-53861519 | Msa0647780:CDS | 45.0% | |
| GTGTAAACATCACTTGTGCC+TGG | - | chr4_3:53861532-53861551 | None:intergenic | 45.0% | |
| GGCACAAGTGATGTTTACAC+AGG | + | chr4_3:53861532-53861551 | Msa0647780:CDS | 45.0% | |
| CTTATCAGTCTGGCTACGAA+TGG | - | chr4_3:53861558-53861577 | None:intergenic | 45.0% | |
| AGCATCAACTACTGCCACAA+TGG | - | chr4_3:53861588-53861607 | None:intergenic | 45.0% | |
| TCTTTAAGCTCACCAGGAAG+CGG | - | chr4_3:53861647-53861666 | None:intergenic | 45.0% | |
| AGAACCTCTTTAAGCTCACC+AGG | - | chr4_3:53861653-53861672 | None:intergenic | 45.0% | |
| GGTGAGCTTAAAGAGGTTCT+TGG | + | chr4_3:53861653-53861672 | Msa0647780:CDS | 45.0% | |
| ! | GTTTACGGATAGTTCTGTGG+TGG | + | chr4_3:53861739-53861758 | Msa0647780:CDS | 45.0% |
| ! | ATAGTTCTGTGGTGGCAGTT+GGG | + | chr4_3:53861747-53861766 | Msa0647780:CDS | 45.0% |
| AGTACGATCTTGAGAGAAGC+TGG | - | chr4_3:53861860-53861879 | None:intergenic | 45.0% | |
| CGGATAGTAGTTTCTGCATC+TGG | - | chr4_3:53861886-53861905 | None:intergenic | 45.0% | |
| AAACTACTATCCGTTGCCCT+TGG | + | chr4_3:53861893-53861912 | Msa0647780:CDS | 45.0% | |
| !! | CCGTAGCTTTAGATGAACCA+AGG | - | chr4_3:53861913-53861932 | None:intergenic | 45.0% |
| TTGAATTCCACGACCCAAAC+TGG | - | chr4_3:53862227-53862246 | None:intergenic | 45.0% | |
| GGAGTGTAGAGAATGGCCAT+AGG | - | chr4_3:53860473-53860492 | None:intergenic | 50.0% | |
| GATGAGTATGAGAGGGTTGC+TGG | + | chr4_3:53860819-53860838 | Msa0647780:CDS | 50.0% | |
| ! | GGCTGCCAAAGATGTTGGTT+CGG | + | chr4_3:53860905-53860924 | Msa0647780:CDS | 50.0% |
| !! | GCAAGGTGCTGCAACTTCTT+TGG | + | chr4_3:53861061-53861080 | Msa0647780:CDS | 50.0% |
| AAAGAGTCTGTTTCGGAGGC+GGG | + | chr4_3:53861188-53861207 | Msa0647780:CDS | 50.0% | |
| ! | CTTTCCGATTTGCCGTAGAG+GGG | + | chr4_3:53861408-53861427 | Msa0647780:CDS | 50.0% |
| TAAGCCCCTCTACGGCAAAT+CGG | - | chr4_3:53861415-53861434 | None:intergenic | 50.0% | |
| GCTTCCTGGTGAGCTTAAAG+AGG | + | chr4_3:53861646-53861665 | Msa0647780:CDS | 50.0% | |
| ! | GATAGTTCTGTGGTGGCAGT+TGG | + | chr4_3:53861746-53861765 | Msa0647780:CDS | 50.0% |
| ! | TAGTTCTGTGGTGGCAGTTG+GGG | + | chr4_3:53861748-53861767 | Msa0647780:CDS | 50.0% |
| ! | GCTGGAGCAACAGCAGTTTT+AGG | + | chr4_3:53861770-53861789 | Msa0647780:CDS | 50.0% |
| ! | TCATCTAAAGCTACGGCTCC+TGG | + | chr4_3:53861917-53861936 | Msa0647780:CDS | 50.0% |
| GCTCCTGGATTTGCAACTTC+TGG | + | chr4_3:53861932-53861951 | Msa0647780:CDS | 50.0% | |
| GCTCCAGAAGTTGCAAATCC+AGG | - | chr4_3:53861938-53861957 | None:intergenic | 50.0% | |
| GGCTATGGCAACCTGAGTAA+TGG | - | chr4_3:53862011-53862030 | None:intergenic | 50.0% | |
| AGGCGAAAGATTCAGCGTGT+TGG | + | chr4_3:53862088-53862107 | Msa0647780:CDS | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | + | chr4_3:53862115-53862134 | Msa0647780:CDS | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | - | chr4_3:53862215-53862234 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | - | chr4_3:53862216-53862235 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | - | chr4_3:53862217-53862236 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | - | chr4_3:53862218-53862237 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | + | chr4_3:53862217-53862236 | Msa0647780:CDS | 50.0% | |
| GGAGTGTAGAGAATGGCCAT+AGG | - | chr4_3:53860473-53860492 | None:intergenic | 50.0% | |
| GATGAGTATGAGAGGGTTGC+TGG | + | chr4_3:53860819-53860838 | Msa0647780:CDS | 50.0% | |
| ! | GGCTGCCAAAGATGTTGGTT+CGG | + | chr4_3:53860905-53860924 | Msa0647780:CDS | 50.0% |
| !! | GCAAGGTGCTGCAACTTCTT+TGG | + | chr4_3:53861061-53861080 | Msa0647780:CDS | 50.0% |
| AAAGAGTCTGTTTCGGAGGC+GGG | + | chr4_3:53861188-53861207 | Msa0647780:CDS | 50.0% | |
| ! | CTTTCCGATTTGCCGTAGAG+GGG | + | chr4_3:53861408-53861427 | Msa0647780:CDS | 50.0% |
| TAAGCCCCTCTACGGCAAAT+CGG | - | chr4_3:53861415-53861434 | None:intergenic | 50.0% | |
| GCTTCCTGGTGAGCTTAAAG+AGG | + | chr4_3:53861646-53861665 | Msa0647780:CDS | 50.0% | |
| ! | GATAGTTCTGTGGTGGCAGT+TGG | + | chr4_3:53861746-53861765 | Msa0647780:CDS | 50.0% |
| ! | TAGTTCTGTGGTGGCAGTTG+GGG | + | chr4_3:53861748-53861767 | Msa0647780:CDS | 50.0% |
| ! | GCTGGAGCAACAGCAGTTTT+AGG | + | chr4_3:53861770-53861789 | Msa0647780:CDS | 50.0% |
| ! | TCATCTAAAGCTACGGCTCC+TGG | + | chr4_3:53861917-53861936 | Msa0647780:CDS | 50.0% |
| GCTCCTGGATTTGCAACTTC+TGG | + | chr4_3:53861932-53861951 | Msa0647780:CDS | 50.0% | |
| GCTCCAGAAGTTGCAAATCC+AGG | - | chr4_3:53861938-53861957 | None:intergenic | 50.0% | |
| GGCTATGGCAACCTGAGTAA+TGG | - | chr4_3:53862011-53862030 | None:intergenic | 50.0% | |
| AGGCGAAAGATTCAGCGTGT+TGG | + | chr4_3:53862088-53862107 | Msa0647780:CDS | 50.0% | |
| TTGCCTTGGGCTACATTTGC+AGG | + | chr4_3:53862115-53862134 | Msa0647780:CDS | 50.0% | |
| ACCCAAACTGGCAATTGAGG+GGG | - | chr4_3:53862215-53862234 | None:intergenic | 50.0% | |
| GACCCAAACTGGCAATTGAG+GGG | - | chr4_3:53862216-53862235 | None:intergenic | 50.0% | |
| CGACCCAAACTGGCAATTGA+GGG | - | chr4_3:53862217-53862236 | None:intergenic | 50.0% | |
| ACGACCCAAACTGGCAATTG+AGG | - | chr4_3:53862218-53862237 | None:intergenic | 50.0% | |
| TCAATTGCCAGTTTGGGTCG+TGG | + | chr4_3:53862217-53862236 | Msa0647780:CDS | 50.0% | |
| ATGCAGCCTGTTGGCGAGAA+AGG | + | chr4_3:53861458-53861477 | Msa0647780:CDS | 55.0% | |
| GAAACGCCTTTCTCGCCAAC+AGG | - | chr4_3:53861467-53861486 | None:intergenic | 55.0% | |
| AGAGCTTCCAGGTGATGTCC+AGG | + | chr4_3:53861511-53861530 | Msa0647780:CDS | 55.0% | |
| ACTTGTGCCTGGACATCACC+TGG | - | chr4_3:53861521-53861540 | None:intergenic | 55.0% | |
| AGGAGCTTCGTCTCTGACCA+AGG | + | chr4_3:53861790-53861809 | Msa0647780:CDS | 55.0% | |
| !! | CCTTTGTCAGCGTCGACATG+GGG | - | chr4_3:53861820-53861839 | None:intergenic | 55.0% |
| !! | GCCTTTGTCAGCGTCGACAT+GGG | - | chr4_3:53861821-53861840 | None:intergenic | 55.0% |
| !! | AGCCTTTGTCAGCGTCGACA+TGG | - | chr4_3:53861822-53861841 | None:intergenic | 55.0% |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | + | chr4_3:53862101-53862120 | Msa0647780:CDS | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | + | chr4_3:53862102-53862121 | Msa0647780:CDS | 55.0% |
| CTGCCTGCAAATGTAGCCCA+AGG | - | chr4_3:53862121-53862140 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | + | chr4_3:53862211-53862230 | Msa0647780:CDS | 55.0% | |
| ATGCAGCCTGTTGGCGAGAA+AGG | + | chr4_3:53861458-53861477 | Msa0647780:CDS | 55.0% | |
| GAAACGCCTTTCTCGCCAAC+AGG | - | chr4_3:53861467-53861486 | None:intergenic | 55.0% | |
| AGAGCTTCCAGGTGATGTCC+AGG | + | chr4_3:53861511-53861530 | Msa0647780:CDS | 55.0% | |
| ACTTGTGCCTGGACATCACC+TGG | - | chr4_3:53861521-53861540 | None:intergenic | 55.0% | |
| AGGAGCTTCGTCTCTGACCA+AGG | + | chr4_3:53861790-53861809 | Msa0647780:CDS | 55.0% | |
| !! | CCTTTGTCAGCGTCGACATG+GGG | - | chr4_3:53861820-53861839 | None:intergenic | 55.0% |
| !! | GCCTTTGTCAGCGTCGACAT+GGG | - | chr4_3:53861821-53861840 | None:intergenic | 55.0% |
| !! | AGCCTTTGTCAGCGTCGACA+TGG | - | chr4_3:53861822-53861841 | None:intergenic | 55.0% |
| !! | AGCGTGTTGGCTTCTTGCCT+TGG | + | chr4_3:53862101-53862120 | Msa0647780:CDS | 55.0% |
| !! | GCGTGTTGGCTTCTTGCCTT+GGG | + | chr4_3:53862102-53862121 | Msa0647780:CDS | 55.0% |
| CTGCCTGCAAATGTAGCCCA+AGG | - | chr4_3:53862121-53862140 | None:intergenic | 55.0% | |
| GCCCCCTCAATTGCCAGTTT+GGG | + | chr4_3:53862211-53862230 | Msa0647780:CDS | 55.0% | |
| GTTGCAGCACCTTGCTGCTG+AGG | - | chr4_3:53861056-53861075 | None:intergenic | 60.0% | |
| ! | GTCTGTTTCGGAGGCGGGTT+CGG | + | chr4_3:53861193-53861212 | Msa0647780:CDS | 60.0% |
| GATGAGGGGATGCAGCCTGT+TGG | + | chr4_3:53861449-53861468 | Msa0647780:CDS | 60.0% | |
| CACTGGGATACTCCGCTTCC+TGG | + | chr4_3:53861632-53861651 | Msa0647780:CDS | 60.0% | |
| CGTCGACATGGGGACTACCT+TGG | - | chr4_3:53861810-53861829 | None:intergenic | 60.0% | |
| CCCCATGTCGACGCTGACAA+AGG | + | chr4_3:53861817-53861836 | Msa0647780:CDS | 60.0% | |
| GGCAGCATCGCAACTTGCAC+AGG | + | chr4_3:53862136-53862155 | Msa0647780:CDS | 60.0% | |
| TGGCAATTGAGGGGGCGACA+GGG | - | chr4_3:53862207-53862226 | None:intergenic | 60.0% | |
| CGCCCCCTCAATTGCCAGTT+TGG | + | chr4_3:53862210-53862229 | Msa0647780:CDS | 60.0% | |
| GTTGCAGCACCTTGCTGCTG+AGG | - | chr4_3:53861056-53861075 | None:intergenic | 60.0% | |
| ! | GTCTGTTTCGGAGGCGGGTT+CGG | + | chr4_3:53861193-53861212 | Msa0647780:CDS | 60.0% |
| GATGAGGGGATGCAGCCTGT+TGG | + | chr4_3:53861449-53861468 | Msa0647780:CDS | 60.0% | |
| CACTGGGATACTCCGCTTCC+TGG | + | chr4_3:53861632-53861651 | Msa0647780:CDS | 60.0% | |
| CGTCGACATGGGGACTACCT+TGG | - | chr4_3:53861810-53861829 | None:intergenic | 60.0% | |
| CCCCATGTCGACGCTGACAA+AGG | + | chr4_3:53861817-53861836 | Msa0647780:CDS | 60.0% | |
| GGCAGCATCGCAACTTGCAC+AGG | + | chr4_3:53862136-53862155 | Msa0647780:CDS | 60.0% | |
| TGGCAATTGAGGGGGCGACA+GGG | - | chr4_3:53862207-53862226 | None:intergenic | 60.0% | |
| CGCCCCCTCAATTGCCAGTT+TGG | + | chr4_3:53862210-53862229 | Msa0647780:CDS | 60.0% | |
| TCTGTGGTGGCAGTTGGGGC+TGG | + | chr4_3:53861752-53861771 | Msa0647780:CDS | 65.0% | |
| CTGGCAATTGAGGGGGCGAC+AGG | - | chr4_3:53862208-53862227 | None:intergenic | 65.0% | |
| TCTGTGGTGGCAGTTGGGGC+TGG | + | chr4_3:53861752-53861771 | Msa0647780:CDS | 65.0% | |
| CTGGCAATTGAGGGGGCGAC+AGG | - | chr4_3:53862208-53862227 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53860438 | 53862351 | 53860438 | ID=Msa0647780;Name=Msa0647780 |
| chr4_3 | mRNA | 53860438 | 53862351 | 53860438 | ID=Msa0647780-mRNA-1;Parent=Msa0647780;Name=Msa0647780-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|637 |
| chr4_3 | exon | 53860438 | 53862351 | 53860438 | ID=Msa0647780-mRNA-1:exon:13515;Parent=Msa0647780-mRNA-1 |
| chr4_3 | CDS | 53860438 | 53862351 | 53860438 | ID=Msa0647780-mRNA-1:cds;Parent=Msa0647780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
