AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554330 MtrunA17_Chr4g0040341 97.844 371 7 1 1 370 1 371 0.0 736
Msa0554330 MtrunA17_Chr3g0088301 74.680 391 74 4 1 369 1 388 0.0 545
Msa0554330 MtrunA17_Chr8g0352031 74.599 374 80 5 1 369 1 364 0.0 518
Msa0554330 MtrunA17_Chr2g0328891 73.243 370 88 4 1 369 2 361 2.83e-180 504
Msa0554330 MtrunA17_Chr8g0393031 58.537 287 119 0 73 359 17 303 1.01e-128 372
Msa0554330 MtrunA17_Chr3g0135801 39.796 294 166 6 70 357 30 318 2.59e-68 218
Msa0554330 MtrunA17_Chr6g0488081 29.431 299 190 6 70 357 15 303 3.38e-34 128
Msa0554330 MtrunA17_Chr3g0135861 30.990 313 174 10 70 357 31 326 9.77e-31 119
Msa0554330 MtrunA17_Chr1g0149111 29.236 301 186 10 65 360 132 410 1.38e-29 118
Msa0554330 MtrunA17_Chr1g0149111 27.273 209 131 6 62 267 221 411 1.98e-14 74.3
Msa0554330 MtrunA17_Chr3g0137941 28.881 277 173 8 77 349 125 381 4.64e-28 113
Msa0554330 MtrunA17_Chr3g0137941 28.571 196 120 5 75 267 216 394 1.46e-15 77.4
Msa0554330 MtrunA17_Chr4g0006851 33.099 284 167 8 74 354 89 352 1.03e-27 112
Msa0554330 MtrunA17_Chr7g0242311 31.095 283 164 8 85 360 98 356 6.17e-27 110
Msa0554330 MtrunA17_Chr5g0396801 28.660 321 175 12 74 360 38 338 7.27e-27 109
Msa0554330 MtrunA17_Chr5g0396801 24.107 224 153 4 54 266 121 338 2.11e-11 64.7
Msa0554330 MtrunA17_Chr8g0347451 29.630 297 172 10 74 344 51 336 5.31e-26 107
Msa0554330 MtrunA17_Chr8g0347451 26.601 203 130 5 77 266 157 353 2.08e-12 67.8
Msa0554330 MtrunA17_Chr4g0063561 28.058 278 180 6 74 349 123 382 4.50e-25 105
Msa0554330 MtrunA17_Chr4g0063561 28.019 207 127 5 60 263 204 391 1.31e-16 80.5
Msa0554330 MtrunA17_Chr7g0240341 28.247 308 202 8 64 360 15 314 1.34e-24 102
Msa0554330 MtrunA17_Chr5g0436041 27.097 310 206 8 60 360 23 321 6.84e-23 97.8
Msa0554330 MtrunA17_Chr2g0296061 27.358 318 186 8 71 354 12 318 1.26e-22 97.1
Msa0554330 MtrunA17_Chr8g0385571 28.723 282 177 9 74 349 227 490 2.50e-22 98.2
Msa0554330 MtrunA17_Chr7g0252401 28.772 285 170 8 74 349 207 467 9.68e-22 96.3
Msa0554330 MtrunA17_Chr4g0067231 26.087 322 191 8 71 356 11 321 1.57e-21 94.0
Msa0554330 MtrunA17_Chr3g0131501 28.622 283 176 10 74 349 205 468 3.94e-20 91.7
Msa0554330 MtrunA17_Chr3g0115801 27.508 309 175 12 77 360 119 403 3.01e-18 85.5
Msa0554330 MtrunA17_Chr4g0000261 24.161 298 184 7 73 349 65 341 1.95e-17 82.8
Msa0554330 MtrunA17_Chr1g0196921 22.932 266 193 5 74 335 14 271 2.33e-15 75.9
Msa0554330 MtrunA17_Chr1g0196921 29.167 168 111 4 75 241 112 272 5.48e-14 72.0
Msa0554330 MtrunA17_Chr6g0488341 26.360 239 155 6 123 357 7 228 2.58e-15 74.7
Msa0554330 MtrunA17_Chr5g0411411 26.621 293 195 10 73 354 8 291 5.54e-15 74.7
Msa0554330 MtrunA17_Chr7g0241521 24.254 268 194 6 70 335 13 273 6.48e-15 74.7
Msa0554330 MtrunA17_Chr6g0463041 26.697 221 126 5 172 357 18 237 1.40e-14 72.8
Msa0554330 MtrunA17_Chr3g0133111 24.830 294 188 8 74 342 6 291 2.37e-14 73.2
Msa0554330 MtrunA17_Chr4g0008061 24.060 266 189 8 74 335 15 271 2.21e-13 70.1
Msa0554330 MtrunA17_Chr8g0366791 24.232 293 181 8 73 344 8 280 3.77e-13 69.3
Msa0554330 MtrunA17_Chr4g0004571 25.692 253 174 5 119 364 51 296 4.09e-13 69.3
Msa0554330 MtrunA17_Chr8g0382201 25.000 308 184 12 77 360 198 482 4.68e-13 70.1
Msa0554330 MtrunA17_Chr2g0331771 24.476 286 199 6 73 354 155 427 5.22e-13 70.1
Msa0554330 MtrunA17_Chr4g0028531 25.000 304 191 10 76 365 27 307 1.69e-12 67.8
Msa0554330 MtrunA17_Chr7g0269701 22.074 299 210 8 61 349 9 294 2.59e-12 67.0
Msa0554330 MtrunA17_Chr5g0412401 22.074 299 199 7 74 342 6 300 7.55e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554330 AT4G28390.1 80.423 378 64 2 3 370 2 379 0.0 583
Msa0554330 AT4G28390.2 80.423 378 64 2 3 370 2 379 0.0 583
Msa0554330 AT5G13490.1 74.545 385 81 4 1 369 1 384 0.0 544
Msa0554330 AT5G13490.2 74.545 385 81 4 1 369 1 384 0.0 544
Msa0554330 AT3G08580.2 74.541 381 84 4 1 369 1 380 0.0 527
Msa0554330 AT3G08580.1 74.541 381 84 4 1 369 1 380 0.0 527
Msa0554330 AT5G17400.1 61.986 292 111 0 70 361 10 301 7.91e-133 382
Msa0554330 AT5G56450.1 38.614 303 167 7 70 360 30 325 5.29e-62 202
Msa0554330 AT4G26180.1 32.899 307 176 9 70 360 17 309 5.08e-33 126
Msa0554330 AT4G26180.2 33.218 289 164 8 70 343 17 291 1.06e-31 121
Msa0554330 AT2G37890.1 29.341 334 217 8 37 360 8 332 1.36e-31 122
Msa0554330 AT3G55640.1 28.475 295 194 7 73 358 37 323 6.83e-30 117
Msa0554330 AT3G55640.4 28.475 295 194 7 73 358 37 323 6.83e-30 117
Msa0554330 AT1G14560.1 29.537 281 172 6 85 349 38 308 1.76e-29 116
Msa0554330 AT3G51870.1 33.333 282 159 10 85 360 102 360 4.48e-29 116
Msa0554330 AT1G14560.2 29.818 275 167 6 85 343 38 302 8.77e-29 114
Msa0554330 AT5G01500.1 33.212 274 158 11 85 354 130 382 1.18e-27 113
Msa0554330 AT3G53940.1 29.545 308 196 9 64 360 63 360 1.70e-27 111
Msa0554330 AT4G32400.1 30.605 281 169 9 74 349 114 373 2.49e-27 111
Msa0554330 AT4G01100.1 27.812 320 175 11 77 360 45 344 3.52e-25 105
Msa0554330 AT4G01100.2 28.000 325 182 11 77 360 45 358 1.28e-23 100
Msa0554330 AT5G51050.1 29.643 280 174 7 74 349 223 483 1.41e-23 102
Msa0554330 AT4G01100.3 27.070 314 173 11 83 360 1 294 3.73e-23 98.6
Msa0554330 AT4G01100.3 25.854 205 129 6 77 266 98 294 5.52e-12 66.2
Msa0554330 AT5G61810.2 27.857 280 174 7 74 349 65 320 3.57e-22 96.3
Msa0554330 AT5G48970.1 27.358 318 189 8 71 354 19 328 8.41e-22 95.5
Msa0554330 AT3G21390.1 26.582 316 193 8 71 354 16 324 1.23e-21 94.7
Msa0554330 AT3G20240.1 24.746 295 186 6 73 349 51 327 1.78e-21 94.7
Msa0554330 AT3G21390.2 26.582 316 193 8 71 354 38 346 2.67e-21 94.4
Msa0554330 AT5G61810.1 27.857 280 174 7 74 349 208 463 4.02e-21 95.1
Msa0554330 AT3G55640.2 28.205 195 128 3 73 263 37 223 4.42e-21 91.7
Msa0554330 AT3G55640.3 28.205 195 128 3 73 263 37 223 4.42e-21 91.7
Msa0554330 AT5G07320.1 26.296 270 173 7 83 349 218 464 3.29e-19 89.4
Msa0554330 AT1G14560.3 30.851 188 113 4 178 349 24 210 5.06e-19 85.5
Msa0554330 AT3G53940.2 29.167 216 139 4 64 274 63 269 5.20e-19 86.7
Msa0554330 AT5G48970.2 26.562 256 153 6 126 354 10 257 9.55e-16 77.0
Msa0554330 AT5G64970.1 27.797 295 169 11 77 349 138 410 2.34e-15 77.4
Msa0554330 AT5G64970.2 27.119 295 171 11 77 349 14 286 9.55e-15 74.7
Msa0554330 AT3G54110.1 23.485 264 193 7 74 335 15 271 1.23e-14 74.3
Msa0554330 AT1G14140.1 24.820 278 192 7 64 335 8 274 1.49e-14 73.9
Msa0554330 AT5G64970.3 28.028 289 164 11 77 343 138 404 1.70e-14 74.7
Msa0554330 AT5G58970.1 24.460 278 195 6 70 342 12 279 2.85e-14 73.2
Msa0554330 AT1G78180.1 26.948 308 178 12 77 360 131 415 7.61e-13 69.7
Msa0554330 AT5G66380.1 27.805 205 124 6 172 364 5 197 2.05e-12 67.8
Msa0554330 AT4G27940.1 25.000 272 169 12 114 360 146 407 6.40e-11 63.9

Find 123 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATTTGGATAATTT+TGG 0.105411 4_1:+51583716 Msa0554330:three_prime_UTR
ACTCCTATTTGTCTATTCTT+TGG 0.187425 4_1:+51582651 Msa0554330:CDS
GATAGGTGGACATTCTTATT+TGG 0.215860 4_1:+51581642 Msa0554330:CDS
TGAGCATTTCATCCTGGTTT+TGG 0.229183 4_1:-51581897 None:intergenic
GACATTCTTATTTGGTTTCC+AGG 0.255723 4_1:+51581650 Msa0554330:CDS
GTCTTGTTTGGAAAGAAATA+TGG 0.260053 4_1:+51583636 Msa0554330:CDS
TGGAACAAACAGAAGGATTC+AGG 0.284229 4_1:-51583695 None:intergenic
GAAATGAAAATCAGTATAAA+TGG 0.294757 4_1:-51580545 None:intergenic
GGTGGTGAGAGGCAGTTTAA+TGG 0.306537 4_1:+51582721 Msa0554330:CDS
GCAGGTGCTGGTGTGCTTGC+TGG 0.309350 4_1:+51583594 Msa0554330:CDS
CTGTTTGTTCCATTGTGATT+TGG 0.314328 4_1:+51583706 Msa0554330:three_prime_UTR
TATCACAATTGGTGCTGGTT+TGG 0.315135 4_1:+51583413 Msa0554330:CDS
AATCCAAAGAATAGACAAAT+AGG 0.321819 4_1:-51582654 None:intergenic
CAGTCACCAATTCCCTTATA+TGG 0.327603 4_1:-51581940 None:intergenic
TGCTAGTTTCCTGTTGGGAT+GGG 0.328388 4_1:+51583389 Msa0554330:CDS
CTGCACCGAGGCCTCTCTTC+TGG 0.330623 4_1:+51580606 Msa0554330:five_prime_UTR
AATAGAAAGGTCCTAAATTC+TGG 0.331139 4_1:-51583763 None:intergenic
AATTATACCCTCATCCTTCA+TGG 0.333517 4_1:-51581974 None:intergenic
TTAGCATCTGGTGGAGCTGC+TGG 0.340273 4_1:+51582619 Msa0554330:CDS
AACATATTGCGTGCTGTTGC+AGG 0.340667 4_1:+51583576 Msa0554330:CDS
TTCTTTGCTAGTTTCCTGTT+GGG 0.343196 4_1:+51583384 Msa0554330:CDS
CCTATCTTCTGAGCAATTGA+TGG 0.352718 4_1:-51581625 None:intergenic
AGAAGAATGATGATGACTTC+TGG 0.353166 4_1:+51583462 Msa0554330:CDS
AAGCTGCAGCTGGTCTTGTT+TGG 0.353609 4_1:+51583624 Msa0554330:CDS
TTACAGTCTGATGGCATTGC+TGG 0.359420 4_1:+51582769 Msa0554330:CDS
AGCAATTTAATTCGTTCAAT+AGG 0.374655 4_1:-51581871 None:intergenic
GGCTACTGGAAGTGGTTTGC+TGG 0.374984 4_1:+51582592 Msa0554330:CDS
AAACCCTAGTCTCTTCATTT+CGG 0.377194 4_1:+51580517 Msa0554330:five_prime_UTR
TTTGGAAAGAAATATGGTTC+TGG 0.380189 4_1:+51583642 Msa0554330:CDS
TTATGAACTTAAATTTCATT+TGG 0.386157 4_1:+51583800 Msa0554330:three_prime_UTR
CTTTGCGTCATTTGCCAAAC+GGG 0.396020 4_1:-51582686 None:intergenic
ACTAATGGAGTGCAGACTTC+TGG 0.400993 4_1:+51581721 Msa0554330:CDS
TTGCTAGTTTCCTGTTGGGA+TGG 0.404433 4_1:+51583388 Msa0554330:CDS
AGATGTTGAATCCACGATAA+AGG 0.405874 4_1:-51582792 None:intergenic
CCATCAATTGCTCAGAAGAT+AGG 0.406150 4_1:+51581625 Msa0554330:CDS
GGATTATGCCCGTACCCGTT+TGG 0.408041 4_1:+51582672 Msa0554330:CDS
CTGAAACCAGTTGTCTTGGT+TGG 0.408866 4_1:+51582868 Msa0554330:CDS
TCTGAGCCATATAAGGGAAT+TGG 0.421286 4_1:+51581934 Msa0554330:CDS
TCTTCTACGCACAGTGTCAA+TGG 0.421926 4_1:-51583445 None:intergenic
GTTAGAGTTGGCGCTAAGCC+TGG 0.422723 4_1:-51581668 None:intergenic
CAGGTTATCTGAGCCATATA+AGG 0.423186 4_1:+51581927 Msa0554330:CDS
TAGCATCTGGTGGAGCTGCT+GGG 0.424080 4_1:+51582620 Msa0554330:CDS
GTGTATCGTGGTCTTTACTT+TGG 0.436559 4_1:+51582832 Msa0554330:CDS
TGGGGTATCACAATTGGTGC+TGG 0.437821 4_1:+51583408 Msa0554330:CDS
CCAAACCATCGTTGCAAAAG+AGG 0.440517 4_1:+51583521 Msa0554330:CDS
TGGAGTGCAGACTTCTGGTT+TGG 0.442748 4_1:+51581726 Msa0554330:CDS
TGACGCAAAGGCTGCAAAGA+AGG 0.445560 4_1:+51582699 Msa0554330:CDS
TTGGGATGGGGTATCACAAT+TGG 0.445710 4_1:+51583402 Msa0554330:CDS
TTTCTTTGCTAGTTTCCTGT+TGG 0.448910 4_1:+51583383 Msa0554330:CDS
CGTCATTTGCCAAACGGGTA+CGG 0.451569 4_1:-51582681 None:intergenic
TTCTCTGAAACCAGTTGTCT+TGG 0.454364 4_1:+51582864 Msa0554330:CDS
ACGTCCGGTACTTTCACTAA+TGG 0.459227 4_1:+51581706 Msa0554330:CDS
CCAGCGGGTCCTTTCTCTGC+TGG 0.461085 4_1:-51581787 None:intergenic
CACTTTGTAGGCTGCAATCA+TGG 0.461883 4_1:+51581585 Msa0554330:exon
TTGCGTGCTGTTGCAGGTGC+TGG 0.462273 4_1:+51583582 Msa0554330:CDS
AAGAAATATGGTTCTGGCGG+CGG 0.463431 4_1:+51583648 Msa0554330:CDS
GGTCCTTTCTCTGCTGGAGA+AGG 0.466249 4_1:-51581781 None:intergenic
AAACCAGTTGTCTTGGTTGG+TGG 0.469067 4_1:+51582871 Msa0554330:CDS
TTGTGATACCCCATCCCAAC+AGG 0.471309 4_1:-51583398 None:intergenic
CACAGTGTCAATGGGATAAG+AGG 0.473276 4_1:-51583436 None:intergenic
ATTCAGATTATCACCTGAGT+AGG 0.479406 4_1:-51582039 None:intergenic
GCTAGTTTCCTGTTGGGATG+GGG 0.479609 4_1:+51583390 Msa0554330:CDS
TGTCTTGGTTGGTGGGATGC+AGG 0.479765 4_1:+51582879 Msa0554330:CDS
ATCCCACCAACCAAGACAAC+TGG 0.485200 4_1:-51582874 None:intergenic
AGGTTATCTGAGCCATATAA+GGG 0.488890 4_1:+51581928 Msa0554330:CDS
CCTTTGCGTCATTTGCCAAA+CGG 0.490345 4_1:-51582687 None:intergenic
GTCATTTGCCAAACGGGTAC+GGG 0.492794 4_1:-51582680 None:intergenic
ACTATAATCTCTAAATAGAA+AGG 0.494293 4_1:-51583776 None:intergenic
ACAGAGATGGCTACTGGAAG+TGG 0.495428 4_1:+51582584 Msa0554330:CDS
GCTGGGAATTTAGCATCTGG+TGG 0.501424 4_1:+51582610 Msa0554330:CDS
AGCAATGCCATCAGACTGTA+AGG 0.504971 4_1:-51582767 None:intergenic
TACAGGAATTACTCTACGTC+CGG 0.508953 4_1:+51581691 Msa0554330:CDS
GTCCCTTCTCCAGCAGAGAA+AGG 0.510593 4_1:+51581778 Msa0554330:CDS
CTTCTACGCACAGTGTCAAT+GGG 0.512712 4_1:-51583444 None:intergenic
TTTGCTGGGAATTTAGCATC+TGG 0.520737 4_1:+51582607 Msa0554330:CDS
GTAATTCCTGTAGTTAGAGT+TGG 0.521037 4_1:-51581680 None:intergenic
AACCAGTTGTCTTGGTTGGT+GGG 0.523148 4_1:+51582872 Msa0554330:CDS
GGAACAAACAGAAGGATTCA+GGG 0.524505 4_1:-51583694 None:intergenic
TGCTCGAACCATGAAGGATG+AGG 0.524575 4_1:+51581966 Msa0554330:CDS
TGGTTATGACAAGCTGCAGC+TGG 0.524956 4_1:+51583614 Msa0554330:CDS
AGCATCTGGTGGAGCTGCTG+GGG 0.525003 4_1:+51582621 Msa0554330:CDS
ATTAATACTCGTTGTGATTG+CGG 0.526257 4_1:+51583883 Msa0554330:three_prime_UTR
GGCATTGCTGGCCTTTATCG+TGG 0.542365 4_1:+51582781 Msa0554330:CDS
ATATACCAGAAGAGAGGCCT+CGG 0.547222 4_1:-51580611 None:intergenic
GTCCTTTCTCTGCTGGAGAA+GGG 0.549707 4_1:-51581780 None:intergenic
ATACTCGTTGTGATTGCGGA+TGG 0.555346 4_1:+51583887 Msa0554330:three_prime_UTR
GCTACTGGAAGTGGTTTGCT+GGG 0.556481 4_1:+51582593 Msa0554330:CDS
ATGAAATGCTCAAAAGTGGC+AGG 0.556927 4_1:+51581908 Msa0554330:CDS
GGATTCAACATCTCGTGTGT+TGG 0.568016 4_1:+51582802 Msa0554330:CDS
GCACCGAAATGAAGAGACTA+GGG 0.568820 4_1:-51580520 None:intergenic
TTAGCGCCAACTCTAACTAC+AGG 0.570302 4_1:+51581674 Msa0554330:CDS
TTCAGATTATCACCTGAGTA+GGG 0.571644 4_1:-51582038 None:intergenic
GACGCAAAGGCTGCAAAGAA+GGG 0.572621 4_1:+51582700 Msa0554330:CDS
CCAGCAGAGAAAGGACCCGC+TGG 0.578869 4_1:+51581787 Msa0554330:CDS
TGAGAGGCAGTTTAATGGAA+TGG 0.581022 4_1:+51582726 Msa0554330:CDS
CAAACCATCGTTGCAAAAGA+GGG 0.586013 4_1:+51583522 Msa0554330:CDS
CAGGATGAAATGCTCAAAAG+TGG 0.586952 4_1:+51581904 Msa0554330:CDS
AGCACCGAAATGAAGAGACT+AGG 0.589050 4_1:-51580521 None:intergenic
GCCTCGGTGCAGATCGCGAG+AGG 0.592203 4_1:-51580595 None:intergenic
AAGAAAACCTTACAGTCTGA+TGG 0.592392 4_1:+51582760 Msa0554330:CDS
TAGGCTGCAATCATGGCCGA+TGG 0.596371 4_1:+51581592 Msa0554330:exon
CAAAATTATCCAAATCACAA+TGG 0.597881 4_1:-51583715 None:intergenic
CACTCCATTAGTGAAAGTAC+CGG 0.601548 4_1:-51581710 None:intergenic
TAAATTGCTTATCCAAAACC+AGG 0.601587 4_1:+51581885 Msa0554330:CDS
GGTATAATTGCTCTGTGGAG+AGG 0.606231 4_1:+51581988 Msa0554330:CDS
GCTCGAACCATGAAGGATGA+GGG 0.608674 4_1:+51581967 Msa0554330:CDS
TGATGGATGATGTGGTCCAT+CGG 0.611029 4_1:-51581608 None:intergenic
GGAAAGAAATATGGTTCTGG+CGG 0.618520 4_1:+51583645 Msa0554330:CDS
TCAATTGCTCAGAAGATAGG+TGG 0.621358 4_1:+51581628 Msa0554330:CDS
CTGCAAAGAAGGGTGGTGAG+AGG 0.621915 4_1:+51582710 Msa0554330:CDS
AGAATAGACAAATAGGAGTG+AGG 0.622653 4_1:-51582647 None:intergenic
CCGTTTGGCAAATGACGCAA+AGG 0.622778 4_1:+51582687 Msa0554330:CDS
TATCAGATACTTCCCTACTC+AGG 0.622842 4_1:+51582026 Msa0554330:CDS
ATCACAATGGAACAAACAGA+AGG 0.628087 4_1:-51583702 None:intergenic
GAGATGATATACCAGAAGAG+AGG 0.642723 4_1:-51580617 None:intergenic
TGAGCAATTGATGGATGATG+TGG 0.652110 4_1:-51581616 None:intergenic
ATAGACAAATAGGAGTGAGG+AGG 0.664089 4_1:-51582644 None:intergenic
CCTCGGTGCAGATCGCGAGA+GGG 0.680688 4_1:-51580594 None:intergenic
GCAAAGGCTGCAAAGAAGGG+TGG 0.689413 4_1:+51582703 Msa0554330:CDS
CCCTCTCGCGATCTGCACCG+AGG 0.693806 4_1:+51580594 Msa0554330:five_prime_UTR
GTTGGCATTATAGTGTATCG+TGG 0.717264 4_1:+51582820 Msa0554330:CDS
ATGAGGGTATAATTGCTCTG+TGG 0.733403 4_1:+51581983 Msa0554330:CDS
GGGACAGTAAATGACGACAG+AGG 0.743353 4_1:-51581760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATAAATTAATTTTGCT+AGG + chr4_1:51580909-51580928 Msa0554330:intron 15.0%
!!! CATATAAATTAATTTTGCTA+GGG + chr4_1:51580910-51580929 Msa0554330:intron 15.0%
!! AGAATGAAATTAGAAATTAA+AGG - chr4_1:51582498-51582517 None:intergenic 15.0%
!!! TGTACAAAATTTGATTTTAA+CGG + chr4_1:51582904-51582923 Msa0554330:intron 15.0%
!! TGAACATTACTAAAATAATT+GGG - chr4_1:51583319-51583338 None:intergenic 15.0%
!! ATGAACATTACTAAAATAAT+TGG - chr4_1:51583320-51583339 None:intergenic 15.0%
!!! ATTAATATTTTCCAGAATTT+AGG + chr4_1:51583752-51583771 Msa0554330:three_prime_UTR 15.0%
!! TTATGAACTTAAATTTCATT+TGG + chr4_1:51583800-51583819 Msa0554330:three_prime_UTR 15.0%
!! GAAATGAAAATCAGTATAAA+TGG - chr4_1:51580548-51580567 None:intergenic 20.0%
!! AGCATAAAAACGAAAATTAA+TGG - chr4_1:51580692-51580711 None:intergenic 20.0%
!! AATAATTCAATTCAACATGT+TGG - chr4_1:51581048-51581067 None:intergenic 20.0%
!!! AACATCAATTTTTTGTTGTT+GGG + chr4_1:51581364-51581383 Msa0554330:intron 20.0%
!! CAAATGTATTTGTTTCAATT+TGG + chr4_1:51581453-51581472 Msa0554330:intron 20.0%
!!! ATTTTTCTGCTTTTAACTTT+TGG + chr4_1:51581524-51581543 Msa0554330:intron 20.0%
!!! ATTGAGATTAGCTTATATTT+TGG + chr4_1:51582318-51582337 Msa0554330:intron 20.0%
!!! AATTTCATTCTTTTCCTTTT+AGG + chr4_1:51582507-51582526 Msa0554330:intron 20.0%
!!! AATTTTAAAAAAGACAGAGA+TGG + chr4_1:51582571-51582590 Msa0554330:CDS 20.0%
!!! GTACAAAATTTGATTTTAAC+GGG + chr4_1:51582905-51582924 Msa0554330:intron 20.0%
!!! GGAATAATTTTAATCTAACA+CGG - chr4_1:51582955-51582974 None:intergenic 20.0%
!!! TAAAATTATTCCTCTTTTGT+TGG + chr4_1:51582963-51582982 Msa0554330:intron 20.0%
!!! TTTTAATAGAAAGATGTCTA+GGG - chr4_1:51583202-51583221 None:intergenic 20.0%
!! TTGAAACTTTAATTGAACTA+GGG + chr4_1:51583257-51583276 Msa0554330:intron 20.0%
!! GAACATTACTAAAATAATTG+GGG - chr4_1:51583318-51583337 None:intergenic 20.0%
!!! CATCATTTTCTTATTATCTA+TGG + chr4_1:51583337-51583356 Msa0554330:intron 20.0%
!! ACTATAATCTCTAAATAGAA+AGG - chr4_1:51583779-51583798 None:intergenic 20.0%
!! TATTTCACAGTGATTTTTAC+TGG + chr4_1:51580730-51580749 Msa0554330:intron 25.0%
!!! TTTTTAAGCTGATTATGAAG+CGG + chr4_1:51580810-51580829 Msa0554330:intron 25.0%
! AAAAAGTAATCGACAAAAAC+AGG - chr4_1:51581243-51581262 None:intergenic 25.0%
!!! GAACATCAATTTTTTGTTGT+TGG + chr4_1:51581363-51581382 Msa0554330:intron 25.0%
!!! ACATCAATTTTTTGTTGTTG+GGG + chr4_1:51581365-51581384 Msa0554330:intron 25.0%
!!! TTTTGGAATTTTTGAATCGT+TGG + chr4_1:51581541-51581560 Msa0554330:intron 25.0%
!!! ATTTTTGATCGATTTTCTGA+TGG + chr4_1:51581810-51581829 Msa0554330:CDS 25.0%
!!! TTTTTGATCGATTTTCTGAT+GGG + chr4_1:51581811-51581830 Msa0554330:CDS 25.0%
! AGCAATTTAATTCGTTCAAT+AGG - chr4_1:51581874-51581893 None:intergenic 25.0%
! ATAAGTTATATGCGTTGTAA+GGG + chr4_1:51582110-51582129 Msa0554330:intron 25.0%
! TTAGATTTCCACAAATTTCT+TGG - chr4_1:51582165-51582184 None:intergenic 25.0%
! AGAAATTTGTGGAAATCTAA+TGG + chr4_1:51582165-51582184 Msa0554330:intron 25.0%
!!! AGATTAGCTTATATTTTGGA+AGG + chr4_1:51582322-51582341 Msa0554330:intron 25.0%
!!! GATTAGCTTATATTTTGGAA+GGG + chr4_1:51582323-51582342 Msa0554330:intron 25.0%
! AAATGCAAGGATACAAAAAT+AGG - chr4_1:51582367-51582386 None:intergenic 25.0%
!! GAAAATGTTTTGTATGTCTA+GGG - chr4_1:51582394-51582413 None:intergenic 25.0%
!! AGAAAATGTTTTGTATGTCT+AGG - chr4_1:51582395-51582414 None:intergenic 25.0%
! AATCCAAAGAATAGACAAAT+AGG - chr4_1:51582657-51582676 None:intergenic 25.0%
!!! TTTGATTTTAACGGGAAATA+TGG + chr4_1:51582913-51582932 Msa0554330:intron 25.0%
!!! ACTTTGATTTTATGTTTGTC+AGG + chr4_1:51582990-51583009 Msa0554330:intron 25.0%
!!! GTAAAAGGTGTTTAATAGAA+AGG - chr4_1:51583180-51583199 None:intergenic 25.0%
!!! GTTTTAATAGAAAGATGTCT+AGG - chr4_1:51583203-51583222 None:intergenic 25.0%
! CTTGAAACTTTAATTGAACT+AGG + chr4_1:51583256-51583275 Msa0554330:intron 25.0%
! CTAAAAGAAAGTCAAAATTG+TGG - chr4_1:51583295-51583314 None:intergenic 25.0%
! CAAAATTATCCAAATCACAA+TGG - chr4_1:51583718-51583737 None:intergenic 25.0%
!!! CATTGTGATTTGGATAATTT+TGG + chr4_1:51583716-51583735 Msa0554330:three_prime_UTR 25.0%
AATCGTTGAGAAAATGGAAA+TGG - chr4_1:51580667-51580686 None:intergenic 30.0%
ATGGAAAATCGTTGAGAAAA+TGG - chr4_1:51580673-51580692 None:intergenic 30.0%
TACAATAAAAACGATTGCAG+AGG - chr4_1:51580767-51580786 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + chr4_1:51581066-51581085 Msa0554330:intron 30.0%
!! ATTTTCTTCTATGAAGCACT+AGG - chr4_1:51581207-51581226 None:intergenic 30.0%
AATCGACAAAAACAGGAATA+AGG - chr4_1:51581236-51581255 None:intergenic 30.0%
! TTTGTGTACATGATTTTCTG+TGG + chr4_1:51581311-51581330 Msa0554330:intron 30.0%
! TTTGAATCGTTGGTATGTTT+TGG + chr4_1:51581551-51581570 Msa0554330:intron 30.0%
AAAATCGATCAAAAATCCAG+CGG - chr4_1:51581806-51581825 None:intergenic 30.0%
TAAATTGCTTATCCAAAACC+AGG + chr4_1:51581885-51581904 Msa0554330:CDS 30.0%
CTTACAACGCATATAACTTA+TGG - chr4_1:51582111-51582130 None:intergenic 30.0%
CATAAGTTATATGCGTTGTA+AGG + chr4_1:51582109-51582128 Msa0554330:intron 30.0%
TTAACACAATATACACTTCG+AGG - chr4_1:51582141-51582160 None:intergenic 30.0%
GTGTTAAACCAAGAAATTTG+TGG + chr4_1:51582154-51582173 Msa0554330:intron 30.0%
!! CTTTTAAGGATTACTTCAAG+AGG + chr4_1:51582542-51582561 Msa0554330:CDS 30.0%
ACTCCTATTTGTCTATTCTT+TGG + chr4_1:51582651-51582670 Msa0554330:CDS 30.0%
CAAAGTAAAACCAACAAAAG+AGG - chr4_1:51582976-51582995 None:intergenic 30.0%
! ATATACACATTACTGATTGC+AGG - chr4_1:51583152-51583171 None:intergenic 30.0%
! CTATGATGTCTAGGATATAA+AGG - chr4_1:51583227-51583246 None:intergenic 30.0%
TTTAGCAATCTATGATGTCT+AGG - chr4_1:51583236-51583255 None:intergenic 30.0%
! ATGGTACTTTTCTTGTTAAC+AGG + chr4_1:51583356-51583375 Msa0554330:intron 30.0%
!! GTCTTGTTTGGAAAGAAATA+TGG + chr4_1:51583636-51583655 Msa0554330:CDS 30.0%
TTTGGAAAGAAATATGGTTC+TGG + chr4_1:51583642-51583661 Msa0554330:CDS 30.0%
AATAGAAAGGTCCTAAATTC+TGG - chr4_1:51583766-51583785 None:intergenic 30.0%
GTATTAATTACCGAACCAAA+AGG - chr4_1:51583871-51583890 None:intergenic 30.0%
ATTAATACTCGTTGTGATTG+CGG + chr4_1:51583883-51583902 Msa0554330:three_prime_UTR 30.0%
AAACCCTAGTCTCTTCATTT+CGG + chr4_1:51580517-51580536 Msa0554330:five_prime_UTR 35.0%
TTTGCTAGGGTTTAACGTTT+AGG + chr4_1:51580923-51580942 Msa0554330:intron 35.0%
TGAATGTAATCACATGTGTC+GGG + chr4_1:51581067-51581086 Msa0554330:intron 35.0%
!! TATTAGAAGTGTCAGTGCTA+AGG + chr4_1:51581092-51581111 Msa0554330:intron 35.0%
!! ATTAGAAGTGTCAGTGCTAA+GGG + chr4_1:51581093-51581112 Msa0554330:intron 35.0%
TATGTAATCCAGAGTTCAGT+CGG - chr4_1:51581140-51581159 None:intergenic 35.0%
!!! TGGTATGTTTTGGTTTTTGC+AGG + chr4_1:51581561-51581580 Msa0554330:intron 35.0%
GATAGGTGGACATTCTTATT+TGG + chr4_1:51581642-51581661 Msa0554330:CDS 35.0%
! GACATTCTTATTTGGTTTCC+AGG + chr4_1:51581650-51581669 Msa0554330:CDS 35.0%
GTAATTCCTGTAGTTAGAGT+TGG - chr4_1:51581683-51581702 None:intergenic 35.0%
AAATCGATCAAAAATCCAGC+GGG - chr4_1:51581805-51581824 None:intergenic 35.0%
AGGTTATCTGAGCCATATAA+GGG + chr4_1:51581928-51581947 Msa0554330:CDS 35.0%
AATTATACCCTCATCCTTCA+TGG - chr4_1:51581977-51581996 None:intergenic 35.0%
TTCAGATTATCACCTGAGTA+GGG - chr4_1:51582041-51582060 None:intergenic 35.0%
ATTCAGATTATCACCTGAGT+AGG - chr4_1:51582042-51582061 None:intergenic 35.0%
TGTGGTGTTTGTATAAGTAG+AGG - chr4_1:51582210-51582229 None:intergenic 35.0%
! ACAGTGACAGTTTTTGTATG+TGG - chr4_1:51582228-51582247 None:intergenic 35.0%
AAAAACTGTCACTGTGATTC+CGG + chr4_1:51582233-51582252 Msa0554330:intron 35.0%
! TTTCCATGTGTTGTCTTGTT+TGG + chr4_1:51582267-51582286 Msa0554330:intron 35.0%
!! TTCCATGTGTTGTCTTGTTT+GGG + chr4_1:51582268-51582287 Msa0554330:intron 35.0%
!! CTCTTTTGGTGATTGAATGT+TGG + chr4_1:51582449-51582468 Msa0554330:intron 35.0%
AGAATAGACAAATAGGAGTG+AGG - chr4_1:51582650-51582669 None:intergenic 35.0%
AAGAAAACCTTACAGTCTGA+TGG + chr4_1:51582760-51582779 Msa0554330:CDS 35.0%
AGATGTTGAATCCACGATAA+AGG - chr4_1:51582795-51582814 None:intergenic 35.0%
! AGAAAGATGTCTAGGGTAAA+AGG - chr4_1:51583195-51583214 None:intergenic 35.0%
! TTTCTTTGCTAGTTTCCTGT+TGG + chr4_1:51583383-51583402 Msa0554330:CDS 35.0%
! TTCTTTGCTAGTTTCCTGTT+GGG + chr4_1:51583384-51583403 Msa0554330:CDS 35.0%
! AGAAGAATGATGATGACTTC+TGG + chr4_1:51583462-51583481 Msa0554330:CDS 35.0%
! GGTACTAAGTCTCTTTTCAA+AGG + chr4_1:51583543-51583562 Msa0554330:CDS 35.0%
ATCACAATGGAACAAACAGA+AGG - chr4_1:51583705-51583724 None:intergenic 35.0%
CTGTTTGTTCCATTGTGATT+TGG + chr4_1:51583706-51583725 Msa0554330:three_prime_UTR 35.0%
TTAATTACCGAACCAAAAGG+AGG - chr4_1:51583868-51583887 None:intergenic 35.0%
GAGATGATATACCAGAAGAG+AGG - chr4_1:51580620-51580639 None:intergenic 40.0%
ATGTAATCCAGAGTTCAGTC+GGG - chr4_1:51581139-51581158 None:intergenic 40.0%
! GTGTACATGATTTTCTGTGG+TGG + chr4_1:51581314-51581333 Msa0554330:intron 40.0%
!! GTTTTTGCAGGTCACTTTGT+AGG + chr4_1:51581573-51581592 Msa0554330:intron 40.0%
! TGAGCAATTGATGGATGATG+TGG - chr4_1:51581619-51581638 None:intergenic 40.0%
CCTATCTTCTGAGCAATTGA+TGG - chr4_1:51581628-51581647 None:intergenic 40.0%
CCATCAATTGCTCAGAAGAT+AGG + chr4_1:51581625-51581644 Msa0554330:CDS 40.0%
TCAATTGCTCAGAAGATAGG+TGG + chr4_1:51581628-51581647 Msa0554330:CDS 40.0%
TACAGGAATTACTCTACGTC+CGG + chr4_1:51581691-51581710 Msa0554330:CDS 40.0%
! CACTCCATTAGTGAAAGTAC+CGG - chr4_1:51581713-51581732 None:intergenic 40.0%
!! TTGATCGATTTTCTGATGGG+AGG + chr4_1:51581814-51581833 Msa0554330:CDS 40.0%
! TGAGCATTTCATCCTGGTTT+TGG - chr4_1:51581900-51581919 None:intergenic 40.0%
! CACTTTTGAGCATTTCATCC+TGG - chr4_1:51581906-51581925 None:intergenic 40.0%
CAGGATGAAATGCTCAAAAG+TGG + chr4_1:51581904-51581923 Msa0554330:CDS 40.0%
ATGAAATGCTCAAAAGTGGC+AGG + chr4_1:51581908-51581927 Msa0554330:CDS 40.0%
CAGGTTATCTGAGCCATATA+AGG + chr4_1:51581927-51581946 Msa0554330:CDS 40.0%
TCTGAGCCATATAAGGGAAT+TGG + chr4_1:51581934-51581953 Msa0554330:CDS 40.0%
CAGTCACCAATTCCCTTATA+TGG - chr4_1:51581943-51581962 None:intergenic 40.0%
! ATGAGGGTATAATTGCTCTG+TGG + chr4_1:51581983-51582002 Msa0554330:CDS 40.0%
TATCAGATACTTCCCTACTC+AGG + chr4_1:51582026-51582045 Msa0554330:CDS 40.0%
CATGGAAAATCTCATGACAC+CGG - chr4_1:51582255-51582274 None:intergenic 40.0%
AACCCAAACAAGACAACACA+TGG - chr4_1:51582273-51582292 None:intergenic 40.0%
TGTCTAGGGATGTAAATGCA+AGG - chr4_1:51582380-51582399 None:intergenic 40.0%
! GATGCATGTGAATGCTCTTT+TGG + chr4_1:51582435-51582454 Msa0554330:intron 40.0%
AGCAAAGTTCAGAGCCTAAA+AGG - chr4_1:51582524-51582543 None:intergenic 40.0%
!!! GGCTCTGAACTTTGCTTTTA+AGG + chr4_1:51582528-51582547 Msa0554330:intron 40.0%
AAAAAGACAGAGATGGCTAC+TGG + chr4_1:51582578-51582597 Msa0554330:CDS 40.0%
TTTGCTGGGAATTTAGCATC+TGG + chr4_1:51582607-51582626 Msa0554330:CDS 40.0%
ATAGACAAATAGGAGTGAGG+AGG - chr4_1:51582647-51582666 None:intergenic 40.0%
TGAGAGGCAGTTTAATGGAA+TGG + chr4_1:51582726-51582745 Msa0554330:CDS 40.0%
GTTGGCATTATAGTGTATCG+TGG + chr4_1:51582820-51582839 Msa0554330:CDS 40.0%
GTGTATCGTGGTCTTTACTT+TGG + chr4_1:51582832-51582851 Msa0554330:CDS 40.0%
!! TTCTCTGAAACCAGTTGTCT+TGG + chr4_1:51582864-51582883 Msa0554330:CDS 40.0%
!! TATCACAATTGGTGCTGGTT+TGG + chr4_1:51583413-51583432 Msa0554330:CDS 40.0%
CAAACCATCGTTGCAAAAGA+GGG + chr4_1:51583522-51583541 Msa0554330:CDS 40.0%
!! AAGTCTCTTTTCAAAGGTGC+TGG + chr4_1:51583549-51583568 Msa0554330:CDS 40.0%
!! GGAAAGAAATATGGTTCTGG+CGG + chr4_1:51583645-51583664 Msa0554330:CDS 40.0%
GGAACAAACAGAAGGATTCA+GGG - chr4_1:51583697-51583716 None:intergenic 40.0%
TGGAACAAACAGAAGGATTC+AGG - chr4_1:51583698-51583717 None:intergenic 40.0%
!! TTTGAGACCTCCTTTTGGTT+CGG + chr4_1:51583858-51583877 Msa0554330:intron 40.0%
GCACCGAAATGAAGAGACTA+GGG - chr4_1:51580523-51580542 None:intergenic 45.0%
! AGCACCGAAATGAAGAGACT+AGG - chr4_1:51580524-51580543 None:intergenic 45.0%
ATATACCAGAAGAGAGGCCT+CGG - chr4_1:51580614-51580633 None:intergenic 45.0%
ACTCCGGTTCTTAGTGGAAA+GGG - chr4_1:51581165-51581184 None:intergenic 45.0%
CACAAAGCAAAGTCCATCAC+AGG - chr4_1:51581342-51581361 None:intergenic 45.0%
CACTTTGTAGGCTGCAATCA+TGG + chr4_1:51581585-51581604 Msa0554330:exon 45.0%
! TGATGGATGATGTGGTCCAT+CGG - chr4_1:51581611-51581630 None:intergenic 45.0%
TTAGCGCCAACTCTAACTAC+AGG + chr4_1:51581674-51581693 Msa0554330:CDS 45.0%
ACGTCCGGTACTTTCACTAA+TGG + chr4_1:51581706-51581725 Msa0554330:CDS 45.0%
ACTAATGGAGTGCAGACTTC+TGG + chr4_1:51581721-51581740 Msa0554330:CDS 45.0%
! CTGTTTTGCTCGAACCATGA+AGG + chr4_1:51581960-51581979 Msa0554330:CDS 45.0%
GGTATAATTGCTCTGTGGAG+AGG + chr4_1:51581988-51582007 Msa0554330:CDS 45.0%
CTTTGCGTCATTTGCCAAAC+GGG - chr4_1:51582689-51582708 None:intergenic 45.0%
CCTTTGCGTCATTTGCCAAA+CGG - chr4_1:51582690-51582709 None:intergenic 45.0%
AGCAATGCCATCAGACTGTA+AGG - chr4_1:51582770-51582789 None:intergenic 45.0%
TTACAGTCTGATGGCATTGC+TGG + chr4_1:51582769-51582788 Msa0554330:CDS 45.0%
GGATTCAACATCTCGTGTGT+TGG + chr4_1:51582802-51582821 Msa0554330:CDS 45.0%
CTGAAACCAGTTGTCTTGGT+TGG + chr4_1:51582868-51582887 Msa0554330:CDS 45.0%
AAACCAGTTGTCTTGGTTGG+TGG + chr4_1:51582871-51582890 Msa0554330:CDS 45.0%
AACCAGTTGTCTTGGTTGGT+GGG + chr4_1:51582872-51582891 Msa0554330:CDS 45.0%
! TTGCTAGTTTCCTGTTGGGA+TGG + chr4_1:51583388-51583407 Msa0554330:CDS 45.0%
! TGCTAGTTTCCTGTTGGGAT+GGG + chr4_1:51583389-51583408 Msa0554330:CDS 45.0%
! TTGGGATGGGGTATCACAAT+TGG + chr4_1:51583402-51583421 Msa0554330:CDS 45.0%
CACAGTGTCAATGGGATAAG+AGG - chr4_1:51583439-51583458 None:intergenic 45.0%
CTTCTACGCACAGTGTCAAT+GGG - chr4_1:51583447-51583466 None:intergenic 45.0%
TCTTCTACGCACAGTGTCAA+TGG - chr4_1:51583448-51583467 None:intergenic 45.0%
! CCTCTTTTGCAACGATGGTT+TGG - chr4_1:51583524-51583543 None:intergenic 45.0%
CCAAACCATCGTTGCAAAAG+AGG + chr4_1:51583521-51583540 Msa0554330:CDS 45.0%
! AGTACCCTCTTTTGCAACGA+TGG - chr4_1:51583529-51583548 None:intergenic 45.0%
! AACATATTGCGTGCTGTTGC+AGG + chr4_1:51583576-51583595 Msa0554330:CDS 45.0%
!! AAGAAATATGGTTCTGGCGG+CGG + chr4_1:51583648-51583667 Msa0554330:CDS 45.0%
AAAGGAGGTCTCAAAGTGCA+AGG - chr4_1:51583853-51583872 None:intergenic 45.0%
!!! TGCACTTTGAGACCTCCTTT+TGG + chr4_1:51583853-51583872 Msa0554330:intron 45.0%
ATACTCGTTGTGATTGCGGA+TGG + chr4_1:51583887-51583906 Msa0554330:three_prime_UTR 45.0%
! GGTGTTGTGTCTGAGTGTCT+CGG - chr4_1:51581027-51581046 None:intergenic 50.0%
CGGGAGGTAAGTAAACCACT+AGG - chr4_1:51581120-51581139 None:intergenic 50.0%
TAATCCAGAGTTCAGTCGGG+AGG - chr4_1:51581136-51581155 None:intergenic 50.0%
AGCCCCTTTCCACTAAGAAC+CGG + chr4_1:51581159-51581178 Msa0554330:intron 50.0%
CTCCGGTTCTTAGTGGAAAG+GGG - chr4_1:51581164-51581183 None:intergenic 50.0%
CACTCCGGTTCTTAGTGGAA+AGG - chr4_1:51581166-51581185 None:intergenic 50.0%
CTTTCCACTAAGAACCGGAG+TGG + chr4_1:51581164-51581183 Msa0554330:intron 50.0%
GTTACCACTCCGGTTCTTAG+TGG - chr4_1:51581171-51581190 None:intergenic 50.0%
AGCACTAGGACACTGTGTGT+GGG - chr4_1:51581193-51581212 None:intergenic 50.0%
AAGCACTAGGACACTGTGTG+TGG - chr4_1:51581194-51581213 None:intergenic 50.0%
TTCTGTGGTGGTTCCTGTGA+TGG + chr4_1:51581326-51581345 Msa0554330:intron 50.0%
! TGGAGTGCAGACTTCTGGTT+TGG + chr4_1:51581726-51581745 Msa0554330:CDS 50.0%
GGGACAGTAAATGACGACAG+AGG - chr4_1:51581763-51581782 None:intergenic 50.0%
GTCCTTTCTCTGCTGGAGAA+GGG - chr4_1:51581783-51581802 None:intergenic 50.0%
TGCTCGAACCATGAAGGATG+AGG + chr4_1:51581966-51581985 Msa0554330:CDS 50.0%
GCTCGAACCATGAAGGATGA+GGG + chr4_1:51581967-51581986 Msa0554330:CDS 50.0%
ACAGAGATGGCTACTGGAAG+TGG + chr4_1:51582584-51582603 Msa0554330:CDS 50.0%
!! GCTACTGGAAGTGGTTTGCT+GGG + chr4_1:51582593-51582612 Msa0554330:CDS 50.0%
GCTGGGAATTTAGCATCTGG+TGG + chr4_1:51582610-51582629 Msa0554330:CDS 50.0%
GTCATTTGCCAAACGGGTAC+GGG - chr4_1:51582683-51582702 None:intergenic 50.0%
CGTCATTTGCCAAACGGGTA+CGG - chr4_1:51582684-51582703 None:intergenic 50.0%
CCGTTTGGCAAATGACGCAA+AGG + chr4_1:51582687-51582706 Msa0554330:CDS 50.0%
TGACGCAAAGGCTGCAAAGA+AGG + chr4_1:51582699-51582718 Msa0554330:CDS 50.0%
GACGCAAAGGCTGCAAAGAA+GGG + chr4_1:51582700-51582719 Msa0554330:CDS 50.0%
GGTGGTGAGAGGCAGTTTAA+TGG + chr4_1:51582721-51582740 Msa0554330:CDS 50.0%
ATCCCACCAACCAAGACAAC+TGG - chr4_1:51582877-51582896 None:intergenic 50.0%
! GCTAGTTTCCTGTTGGGATG+GGG + chr4_1:51583390-51583409 Msa0554330:CDS 50.0%
TTGTGATACCCCATCCCAAC+AGG - chr4_1:51583401-51583420 None:intergenic 50.0%
! TGGGGTATCACAATTGGTGC+TGG + chr4_1:51583408-51583427 Msa0554330:CDS 50.0%
TGGTTATGACAAGCTGCAGC+TGG + chr4_1:51583614-51583633 Msa0554330:CDS 50.0%
!! AAGCTGCAGCTGGTCTTGTT+TGG + chr4_1:51583624-51583643 Msa0554330:CDS 50.0%
GGTCTCAAAGTGCAAGGACT+TGG - chr4_1:51583847-51583866 None:intergenic 50.0%
GTCAGTGCTAAGGGTCCTAG+TGG + chr4_1:51581102-51581121 Msa0554330:intron 55.0%
CTTACCTCCCGACTGAACTC+TGG + chr4_1:51581129-51581148 Msa0554330:intron 55.0%
! CTGTGTGTGGGTTACCACTC+CGG - chr4_1:51581181-51581200 None:intergenic 55.0%
TAGGCTGCAATCATGGCCGA+TGG + chr4_1:51581592-51581611 Msa0554330:exon 55.0%
GTTAGAGTTGGCGCTAAGCC+TGG - chr4_1:51581671-51581690 None:intergenic 55.0%
GTCCCTTCTCCAGCAGAGAA+AGG + chr4_1:51581778-51581797 Msa0554330:CDS 55.0%
GGTCCTTTCTCTGCTGGAGA+AGG - chr4_1:51581784-51581803 None:intergenic 55.0%
! GGCTACTGGAAGTGGTTTGC+TGG + chr4_1:51582592-51582611 Msa0554330:CDS 55.0%
TTAGCATCTGGTGGAGCTGC+TGG + chr4_1:51582619-51582638 Msa0554330:CDS 55.0%
TAGCATCTGGTGGAGCTGCT+GGG + chr4_1:51582620-51582639 Msa0554330:CDS 55.0%
GGATTATGCCCGTACCCGTT+TGG + chr4_1:51582672-51582691 Msa0554330:CDS 55.0%
GCAAAGGCTGCAAAGAAGGG+TGG + chr4_1:51582703-51582722 Msa0554330:CDS 55.0%
CTGCAAAGAAGGGTGGTGAG+AGG + chr4_1:51582710-51582729 Msa0554330:CDS 55.0%
!! GGCATTGCTGGCCTTTATCG+TGG + chr4_1:51582781-51582800 Msa0554330:CDS 55.0%
!! TGTCTTGGTTGGTGGGATGC+AGG + chr4_1:51582879-51582898 Msa0554330:CDS 55.0%
AGCATCTGGTGGAGCTGCTG+GGG + chr4_1:51582621-51582640 Msa0554330:CDS 60.0%
! TTGCGTGCTGTTGCAGGTGC+TGG + chr4_1:51583582-51583601 Msa0554330:CDS 60.0%
! CCTCGGTGCAGATCGCGAGA+GGG - chr4_1:51580597-51580616 None:intergenic 65.0%
CTGCACCGAGGCCTCTCTTC+TGG + chr4_1:51580606-51580625 Msa0554330:five_prime_UTR 65.0%
CCAGCGGGTCCTTTCTCTGC+TGG - chr4_1:51581790-51581809 None:intergenic 65.0%
CCAGCAGAGAAAGGACCCGC+TGG + chr4_1:51581787-51581806 Msa0554330:CDS 65.0%
!! GCAGGTGCTGGTGTGCTTGC+TGG + chr4_1:51583594-51583613 Msa0554330:CDS 65.0%
CCCTCTCGCGATCTGCACCG+AGG + chr4_1:51580594-51580613 Msa0554330:five_prime_UTR 70.0%
! GCCTCGGTGCAGATCGCGAG+AGG - chr4_1:51580598-51580617 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51580478 51583973 51580478 ID=Msa0554330;Name=Msa0554330
chr4_1 mRNA 51580478 51583973 51580478 ID=Msa0554330-mRNA-1;Parent=Msa0554330;Name=Msa0554330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=171|1|1|1|0.5|0.4|5|261|370
chr4_1 exon 51580478 51580627 51580478 ID=Msa0554330-mRNA-1:exon:14758;Parent=Msa0554330-mRNA-1
chr4_1 exon 51581583 51582047 51581583 ID=Msa0554330-mRNA-1:exon:14759;Parent=Msa0554330-mRNA-1
chr4_1 exon 51582529 51582900 51582529 ID=Msa0554330-mRNA-1:exon:14760;Parent=Msa0554330-mRNA-1
chr4_1 exon 51583378 51583836 51583378 ID=Msa0554330-mRNA-1:exon:14761;Parent=Msa0554330-mRNA-1
chr4_1 exon 51583875 51583973 51583875 ID=Msa0554330-mRNA-1:exon:14762;Parent=Msa0554330-mRNA-1
chr4_1 five_prime_UTR 51580478 51580627 51580478 ID=Msa0554330-mRNA-1:five_prime_utr;Parent=Msa0554330-mRNA-1
chr4_1 five_prime_UTR 51581583 51581603 51581583 ID=Msa0554330-mRNA-1:five_prime_utr;Parent=Msa0554330-mRNA-1
chr4_1 CDS 51581604 51582047 51581604 ID=Msa0554330-mRNA-1:cds;Parent=Msa0554330-mRNA-1
chr4_1 CDS 51582529 51582900 51582529 ID=Msa0554330-mRNA-1:cds;Parent=Msa0554330-mRNA-1
chr4_1 CDS 51583378 51583674 51583378 ID=Msa0554330-mRNA-1:cds;Parent=Msa0554330-mRNA-1
chr4_1 three_prime_UTR 51583675 51583836 51583675 ID=Msa0554330-mRNA-1:three_prime_utr;Parent=Msa0554330-mRNA-1
chr4_1 three_prime_UTR 51583875 51583973 51583875 ID=Msa0554330-mRNA-1:three_prime_utr;Parent=Msa0554330-mRNA-1
Gene Sequence

>Msa0554330

ATGGCCGATGGACCACATCATCCATCAATTGCTCAGAAGATAGGTGGACATTCTTATTTGGTTTCCAGGCTTAGCGCCAACTCTAACTACAGGAATTACTCTACGTCCGGTACTTTCACTAATGGAGTGCAGACTTCTGGTTTGGCACTTGCGTCACCTCTGTCGTCATTTACTGTCCCTTCTCCAGCAGAGAAAGGACCCGCTGGATTTTTGATCGATTTTCTGATGGGAGGAGTGTCTGCTGCTGTGTCAAAGACAGCTGCTGCTCCTATTGAACGAATTAAATTGCTTATCCAAAACCAGGATGAAATGCTCAAAAGTGGCAGGTTATCTGAGCCATATAAGGGAATTGGTGACTGTTTTGCTCGAACCATGAAGGATGAGGGTATAATTGCTCTGTGGAGAGGCAATACTGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAATTTTAAAAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTAGCATCTGGTGGAGCTGCTGGGGCCTCCTCACTCCTATTTGTCTATTCTTTGGATTATGCCCGTACCCGTTTGGCAAATGACGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGAATGGTTGATGTTTACAAGAAAACCTTACAGTCTGATGGCATTGCTGGCCTTTATCGTGGATTCAACATCTCGTGTGTTGGCATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTCTTGGTTGGTGGGATGCAGGATAGTTTCTTTGCTAGTTTCCTGTTGGGATGGGGTATCACAATTGGTGCTGGTTTGGCCTCTTATCCCATTGACACTGTGCGTAGAAGAATGATGATGACTTCTGGAGAAGCTGTGAAGTATAACAGCTCTTTGCATGCATTCCAAACCATCGTTGCAAAAGAGGGTACTAAGTCTCTTTTCAAAGGTGCTGGTGCAAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAGCTGCAGCTGGTCTTGTTTGGAAAGAAATATGGTTCTGGCGGCGGCTAA
Protein sequence

>Msa0554330

MADGPHHPSIAQKIGGHSYLVSRLSANSNYRNYSTSGTFTNGVQTSGLALASPLSSFTVPSPAEKGPAGFLIDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMLKSGRLSEPYKGIGDCFARTMKDEGIIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGMVDVYKKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGMQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVLFGKKYGSGGG*