AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801220 MtrunA17_Chr5g0407811 98.280 407 7 0 4 410 2 408 0.0 817
Msa0801220 MtrunA17_Chr1g0168531 96.049 405 16 0 6 410 47 451 0.0 754
Msa0801220 MtrunA17_Chr1g0181761 94.059 404 24 0 7 410 2 405 0.0 744
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801220 AT3G09630.1 82.963 405 69 0 6 410 2 406 0.0 693
Msa0801220 AT3G09630.2 82.716 405 69 1 6 410 2 405 0.0 686
Msa0801220 AT5G02870.1 81.975 405 73 0 6 410 3 407 0.0 682
Msa0801220 AT5G02870.2 81.728 405 73 1 6 410 3 406 0.0 676

Find 155 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTGGATTCGATTTA+TGG 0.106859 5_3:+14902635 Msa0801220:CDS
AAGGGACCGTTGATTGTTTA+TGG 0.170065 5_3:+14902473 Msa0801220:CDS
CTCTTAACATCCTTCTTAAT+TGG 0.181814 5_3:-14902773 None:intergenic
TTATCTGAACTAAATAATTT+TGG 0.199263 5_3:+14905120 Msa0801220:three_prime_UTR
GAAAACTAAGGAGGCTATTA+AGG 0.230890 5_3:+14902346 Msa0801220:CDS
GCTTGCACCGGGTGGGCATT+TGG 0.242314 5_3:+14902580 Msa0801220:CDS
GTTCCTCATCTTCCCCTTCC+CGG 0.264935 5_3:-14902432 None:intergenic
CGGTGGACATTTCCGATTCT+AGG 0.271462 5_3:-14901887 None:intergenic
AACTATGGCGAACATATAAA+TGG 0.273513 5_3:-14905085 None:intergenic
CGTGCTGGTCAGGCTGCTTT+TGG 0.280197 5_3:+14902116 Msa0801220:CDS
CCTGAGTTTCCTCTTGTTGT+TGG 0.285780 5_3:+14902302 Msa0801220:CDS
AATTTGACAACTTCTCTAAA+TGG 0.287943 5_3:+14905041 Msa0801220:CDS
GCTGCTGCTGCGGCGGCCAT+TGG 0.294478 5_3:-14901831 None:intergenic
AGCTTCTGCTATTCCTTCAT+TGG 0.305726 5_3:+14902247 Msa0801220:CDS
AGGTTTGGTGACCAGCTTTC+CGG 0.324392 5_3:-14902025 None:intergenic
CTTGCACCGGGTGGGCATTT+GGG 0.333428 5_3:+14902581 Msa0801220:CDS
AGCTTTCCCTGCAGCCTTGA+TGG 0.333710 5_3:-14904981 None:intergenic
TGGTTCTTGCTCGTGGTCAT+AGG 0.345540 5_3:+14902267 Msa0801220:CDS
GAGATGAATACAATGTGTTT+TGG 0.353712 5_3:-14901713 None:intergenic
AGAAATTGGATTCGATTTAT+GGG 0.370066 5_3:+14902636 Msa0801220:CDS
TGGAAGGGTTGTTGGTGAAT+CGG 0.372776 5_3:-14901907 None:intergenic
ATTTGGGTAGGTTTGTGATT+TGG 0.373636 5_3:+14902597 Msa0801220:CDS
GCTGCTGCGGCGGCCATTGG+TGG 0.376380 5_3:-14901828 None:intergenic
TCACGTATCCCTCGTGTTGC+TGG 0.377052 5_3:+14902080 Msa0801220:CDS
ACATTTCCGATTCTAGGGTT+TGG 0.381003 5_3:-14901881 None:intergenic
CTCTTAGCAGTCTTGGCATA+AGG 0.381657 5_3:-14902851 None:intergenic
GATTTATGGGTCGTTTGATA+AGG 0.391731 5_3:+14902649 Msa0801220:CDS
CCCATGATTCAGCTGAGGTT+TGG 0.398368 5_3:-14902040 None:intergenic
GGAAGGGGAAGATGAGGAAC+AGG 0.401302 5_3:+14902435 Msa0801220:CDS
CTTTGCTTGCTGAGGCTGAA+AGG 0.401451 5_3:+14902879 Msa0801220:CDS
GCTGCGGCGGCCATTGGTGG+AGG 0.401489 5_3:-14901825 None:intergenic
CCACAAGGATCTGGAGGAAA+TGG 0.401682 5_3:+14902171 Msa0801220:CDS
TGGACGAAGTTGACGATGTC+AGG 0.402562 5_3:-14901960 None:intergenic
GCTGACGGCGTAAGGTTGTC+TGG 0.404851 5_3:-14902003 None:intergenic
TGAAGGGGCGAAGGCGGTTA+AGG 0.407318 5_3:+14902499 Msa0801220:CDS
GTGTAAGCCTTGCGTAGTTT+TGG 0.408233 5_3:+14905340 Msa0801220:three_prime_UTR
GAAGAGAAAGACTGTCTCTA+AGG 0.412134 5_3:+14902931 Msa0801220:CDS
TCGGGGATTGGAAGGGTTGT+TGG 0.414001 5_3:-14901915 None:intergenic
TTCCTCATCTTCCCCTTCCC+GGG 0.419374 5_3:-14902431 None:intergenic
ATCCCTCGTGTTGCTGGTGG+TGG 0.419638 5_3:+14902086 Msa0801220:CDS
CATTTCCTCCAGATCCTTGT+GGG 0.422522 5_3:-14902170 None:intergenic
TGGGACCCACCGTGCTGGTC+AGG 0.423632 5_3:+14902106 Msa0801220:CDS
AGCTAGGTGCATACCTTACT+TGG 0.430184 5_3:-14905291 None:intergenic
TGTTTGCTCCCACAAGGATC+TGG 0.440906 5_3:+14902162 Msa0801220:CDS
ATAACATTAAGATTCTTAAG+AGG 0.441145 5_3:-14902815 None:intergenic
ACCAAACCTCAGCTGAATCA+TGG 0.447157 5_3:+14902039 Msa0801220:CDS
ATTGAAGCACGCATGACATC+GGG 0.449044 5_3:-14901933 None:intergenic
CACTATCCAAACCCTAGAAT+CGG 0.457816 5_3:+14901875 Msa0801220:CDS
TGCTGAGGCTGAAAGGGTTA+AGG 0.459340 5_3:+14902886 Msa0801220:CDS
ATGCTGTCCCTGGCCAAGTA+AGG 0.466393 5_3:+14905278 Msa0801220:three_prime_UTR
ACAACTTCTCTAAATGGCTA+GGG 0.469584 5_3:+14905047 Msa0801220:CDS
TTTGCTTGCTGAGGCTGAAA+GGG 0.469665 5_3:+14902880 Msa0801220:CDS
AGCCATCCTCTTAGCAGTCT+TGG 0.471110 5_3:-14902858 None:intergenic
GCTTCTGCCATCAAGGCTGC+AGG 0.471561 5_3:+14904974 Msa0801220:CDS
CCAAACCTCAGCTGAATCAT+GGG 0.477617 5_3:+14902040 Msa0801220:CDS
AATGTGTAATAATCTTAAAC+CGG 0.479016 5_3:-14905157 None:intergenic
TGGGTCGTTTGATAAGGCTT+CGG 0.480693 5_3:+14902655 Msa0801220:CDS
GCTTTCCGGCTGACGGCGTA+AGG 0.484743 5_3:-14902011 None:intergenic
GCACGCATGACATCGGGGAT+TGG 0.488868 5_3:-14901927 None:intergenic
GTGACCAGCTTTCCGGCTGA+CGG 0.489052 5_3:-14902018 None:intergenic
AGAATCTTAATGTTATGCTC+AGG 0.492457 5_3:+14902822 Msa0801220:CDS
TACGCCGTCAGCCGGAAAGC+TGG 0.492481 5_3:+14902014 Msa0801220:CDS
TAAGGTATGCACCTAGCTAT+CGG 0.496967 5_3:+14905296 Msa0801220:three_prime_UTR
CACCGGGTGGGCATTTGGGT+AGG 0.501033 5_3:+14902585 Msa0801220:CDS
TGAAAGGGTTAAGGCTAAGA+AGG 0.502198 5_3:+14902895 Msa0801220:CDS
GGTGGACATTTCCGATTCTA+GGG 0.503679 5_3:-14901886 None:intergenic
TTTCTTCCTCCCTCCACCAA+TGG 0.505861 5_3:+14901815 Msa0801220:exon
TCAAGGCTGCAGGGAAAGCT+TGG 0.505941 5_3:+14904984 Msa0801220:CDS
GAAAAGGCCAAGGATAGCCT+TGG 0.508889 5_3:+14902401 Msa0801220:CDS
GACAACCTTACGCCGTCAGC+CGG 0.509508 5_3:+14902006 Msa0801220:CDS
GTTGTTGGTGATGCTGCTGA+AGG 0.512772 5_3:+14902317 Msa0801220:CDS
GACAACTTCTCTAAATGGCT+AGG 0.516462 5_3:+14905046 Msa0801220:CDS
AAGGTATGCACCTAGCTATC+GGG 0.517073 5_3:+14905297 Msa0801220:three_prime_UTR
TTGATTGTTTATGGTACTGA+AGG 0.517929 5_3:+14902482 Msa0801220:CDS
GGTGGTGGGACCCACCGTGC+TGG 0.518839 5_3:+14902101 Msa0801220:CDS
CTGCGGCGGCCATTGGTGGA+GGG 0.520408 5_3:-14901824 None:intergenic
GCATGACATCGGGGATTGGA+AGG 0.520572 5_3:-14901923 None:intergenic
GAGGATGGCTTTGCTTGCTG+AGG 0.523283 5_3:+14902871 Msa0801220:CDS
GGAGGAAGCTTCTGCCATCA+AGG 0.523621 5_3:+14904967 Msa0801220:intron
TCTAATCCCAAGGCTATCCT+TGG 0.524268 5_3:-14902408 None:intergenic
GATACGTGAAACAGCACGTC+CGG 0.525790 5_3:-14902066 None:intergenic
TTGGGATTAGACCCGGGAAG+GGG 0.526474 5_3:+14902420 Msa0801220:CDS
AATTTGTTATATGCTGTCCC+TGG 0.527625 5_3:+14905268 Msa0801220:three_prime_UTR
CAATTAAGAAGGATGTTAAG+AGG 0.528802 5_3:+14902774 Msa0801220:CDS
GGTGCATACCTTACTTGGCC+AGG 0.528908 5_3:-14905286 None:intergenic
CCATTTCCTCCAGATCCTTG+TGG 0.531420 5_3:-14902171 None:intergenic
GGGAGGAAGAAACACTAGCT+AGG 0.532621 5_3:-14901804 None:intergenic
CAGGCGATATATATCGCGTA+AGG 0.533503 5_3:+14902454 Msa0801220:CDS
TGATTGTTTATGGTACTGAA+GGG 0.536027 5_3:+14902483 Msa0801220:CDS
CCTTCATTGGTTCTTGCTCG+TGG 0.536411 5_3:+14902260 Msa0801220:CDS
TGCTGATGCTGAAAAGGCCA+AGG 0.537379 5_3:+14902391 Msa0801220:CDS
AAAAGGCCAAGGATAGCCTT+GGG 0.538830 5_3:+14902402 Msa0801220:CDS
TGGTGAATTCTGATTTGACT+AGG 0.539110 5_3:+14902714 Msa0801220:CDS
TGTTGTGAGGCCAATTAAGA+AGG 0.543329 5_3:+14902763 Msa0801220:CDS
AAGGCTTCGGAGAAGAAGAA+AGG 0.545763 5_3:+14902668 Msa0801220:CDS
CGGCGGCCATTGGTGGAGGG+AGG 0.548170 5_3:-14901821 None:intergenic
TCAGCAGACACCCGATAGCT+AGG 0.550548 5_3:-14905307 None:intergenic
AACCTACCCAAATGCCCACC+CGG 0.552263 5_3:-14902587 None:intergenic
AGCAGCCTGACCAGCACGGT+GGG 0.552373 5_3:-14902111 None:intergenic
CCTTGGGATTAGACCCGGGA+AGG 0.558086 5_3:+14902418 Msa0801220:CDS
GATTGAAGCACGCATGACAT+CGG 0.563386 5_3:-14901934 None:intergenic
CTTATGCCAAGACTGCTAAG+AGG 0.565343 5_3:+14902852 Msa0801220:CDS
CTAGGGTTTGGATAGTGACA+AGG 0.566331 5_3:-14901869 None:intergenic
GATAGCCTTGGGATTAGACC+CGG 0.567327 5_3:+14902413 Msa0801220:CDS
CTTGGGATTAGACCCGGGAA+GGG 0.569338 5_3:+14902419 Msa0801220:CDS
GAATTCACCATCTTAGCCCT+AGG 0.569796 5_3:-14902701 None:intergenic
TTATGGTACTGAAGGGGCGA+AGG 0.571791 5_3:+14902490 Msa0801220:CDS
TACACATTATGCAGACAGCA+TGG 0.574711 5_3:+14905172 Msa0801220:three_prime_UTR
ATATATTCCAAAACTACGCA+AGG 0.577003 5_3:-14905347 None:intergenic
TCAGCTGAATCATGGGGTAC+CGG 0.577134 5_3:+14902047 Msa0801220:CDS
CGAAGTTGACGATGTCAGGA+CGG 0.577332 5_3:-14901956 None:intergenic
TGAAGGAGTAGAGAAAACTA+AGG 0.578428 5_3:+14902334 Msa0801220:CDS
CCTTCCCGGGTCTAATCCCA+AGG 0.579401 5_3:-14902418 None:intergenic
CCACGAGCAAGAACCAATGA+AGG 0.582084 5_3:-14902260 None:intergenic
ATAATCAGAATCTGAGACCA+TGG 0.582620 5_3:-14905014 None:intergenic
GGAGGAAGAAACACTAGCTA+GGG 0.583478 5_3:-14901803 None:intergenic
GCAGCATCACCAACAACAAG+AGG 0.587525 5_3:-14902311 None:intergenic
CAACTTCTCTAAATGGCTAG+GGG 0.592153 5_3:+14905048 Msa0801220:CDS
TCCCTCGTGTTGCTGGTGGT+GGG 0.595574 5_3:+14902087 Msa0801220:CDS
GACCCGGGAAGGGGAAGATG+AGG 0.595589 5_3:+14902429 Msa0801220:CDS
GGATCTGGAGGAAATGGCAT+AGG 0.598192 5_3:+14902177 Msa0801220:CDS
CTTCTGCCATCAAGGCTGCA+GGG 0.598308 5_3:+14904975 Msa0801220:CDS
TGCCAAGACTGCTAAGAGGA+TGG 0.598875 5_3:+14902856 Msa0801220:CDS
TGGTGTTGAGATTACTAATG+TGG 0.599446 5_3:+14902538 Msa0801220:CDS
AATTAAGAAGGATGTTAAGA+GGG 0.600812 5_3:+14902775 Msa0801220:CDS
AGGCTTCGGAGAAGAAGAAA+GGG 0.601116 5_3:+14902669 Msa0801220:CDS
CCAACAACAAGAGGAAACTC+AGG 0.606988 5_3:-14902302 None:intergenic
GTGCATACCTTACTTGGCCA+GGG 0.608278 5_3:-14905285 None:intergenic
GTCCCACCACCAGCAACACG+AGG 0.616153 5_3:-14902089 None:intergenic
GATTGTTTATGGTACTGAAG+GGG 0.617143 5_3:+14902484 Msa0801220:CDS
TGGTACTGAAGGGGCGAAGG+CGG 0.619937 5_3:+14902493 Msa0801220:CDS
AAGGGTTGTTGGTGAATCGG+TGG 0.620089 5_3:-14901904 None:intergenic
CGTATCCCTCGTGTTGCTGG+TGG 0.624534 5_3:+14902083 Msa0801220:CDS
CATGACATCGGGGATTGGAA+GGG 0.626690 5_3:-14901922 None:intergenic
AGGAGTAGAGAAAACTAAGG+AGG 0.635842 5_3:+14902337 Msa0801220:CDS
GTAGAATGTTTGCTCCCACA+AGG 0.636493 5_3:+14902156 Msa0801220:CDS
TAGGGTTTGGATAGTGACAA+GGG 0.638790 5_3:-14901868 None:intergenic
TAGGATTATTAATAGTGATG+AGG 0.640452 5_3:+14902733 Msa0801220:CDS
TCAGTACCATAAACAATCAA+CGG 0.642392 5_3:-14902479 None:intergenic
ATAGCCTTGGGATTAGACCC+GGG 0.646880 5_3:+14902414 Msa0801220:CDS
TTGCTCCCACAAGGATCTGG+AGG 0.649385 5_3:+14902165 Msa0801220:CDS
TTGAGATTACTAATGTGGAG+AGG 0.654222 5_3:+14902543 Msa0801220:CDS
GGTACCCCATGATTCAGCTG+AGG 0.655914 5_3:-14902045 None:intergenic
CAAAAGCAGCCTGACCAGCA+CGG 0.671346 5_3:-14902115 None:intergenic
ACATTAGTAATCTCAACACC+AGG 0.671385 5_3:-14902536 None:intergenic
AGGCGATATATATCGCGTAA+GGG 0.674298 5_3:+14902455 Msa0801220:CDS
AGGGTTTGGATAGTGACAAG+GGG 0.687917 5_3:-14901867 None:intergenic
TTTGGTAACATGTGTCGTGG+TGG 0.688796 5_3:+14902134 Msa0801220:CDS
TATTGGTAAGAATCATAGTG+AGG 0.691339 5_3:+14905375 Msa0801220:three_prime_UTR
TCCCACCACCAGCAACACGA+GGG 0.698370 5_3:-14902088 None:intergenic
AAGCAGCCTGACCAGCACGG+TGG 0.701528 5_3:-14902112 None:intergenic
GAAAGCTTGGTATAACACCA+TGG 0.705586 5_3:+14904997 Msa0801220:CDS
ATGAGGTGCAGAGTGTTGTG+AGG 0.717794 5_3:+14902750 Msa0801220:CDS
TTGAAGCACGCATGACATCG+GGG 0.725773 5_3:-14901932 None:intergenic
CAAACCTCAGCTGAATCATG+GGG 0.734702 5_3:+14902041 Msa0801220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTAAATTATTAAAGTT+TGG - chr5_3:14903351-14903370 None:intergenic 10.0%
!!! ATAATTAATAGTTTTTGATT+TGG + chr5_3:14903407-14903426 Msa0801220:intron 10.0%
!!! TAATTAATAGTTTTTGATTT+GGG + chr5_3:14903408-14903427 Msa0801220:intron 10.0%
!!! TACAAAATGTTTTTAAAATA+TGG - chr5_3:14903869-14903888 None:intergenic 10.0%
!!! TTTGGAATATATATATATAT+TGG + chr5_3:14905358-14905377 Msa0801220:three_prime_UTR 10.0%
!!! ATAATTCATAGTTTTTGATT+TGG + chr5_3:14903555-14903574 Msa0801220:intron 15.0%
!!! TAATTCATAGTTTTTGATTT+GGG + chr5_3:14903556-14903575 Msa0801220:intron 15.0%
!!! TTTTTAAAATATGGTCAATT+TGG - chr5_3:14903860-14903879 None:intergenic 15.0%
!!! CAAATTTCTAAATTGATTTA+GGG + chr5_3:14903896-14903915 Msa0801220:intron 15.0%
!!! AACTTAGTTTTATTTTAATC+TGG - chr5_3:14904279-14904298 None:intergenic 15.0%
!!! AGTTTAAGACAATAATTAAA+TGG - chr5_3:14904911-14904930 None:intergenic 15.0%
!!! TTATCTGAACTAAATAATTT+TGG + chr5_3:14905120-14905139 Msa0801220:three_prime_UTR 15.0%
!! ATAACATTAAGATTCTTAAG+AGG - chr5_3:14902818-14902837 None:intergenic 20.0%
!!! TTGATCATTTTATGTTGATT+TGG + chr5_3:14903108-14903127 Msa0801220:intron 20.0%
!!! ATTAAAGCACTAAATCTAAA+TGG - chr5_3:14903224-14903243 None:intergenic 20.0%
!! TTAGATTTAGTGCTTTAATT+AGG + chr5_3:14903225-14903244 Msa0801220:intron 20.0%
!!! ACAATCTCAACTTTTATATA+AGG - chr5_3:14903264-14903283 None:intergenic 20.0%
!! TTTCAACTAAAATCAAATAG+CGG - chr5_3:14903833-14903852 None:intergenic 20.0%
!! CCTAAATCAATTTAGAAATT+TGG - chr5_3:14903898-14903917 None:intergenic 20.0%
!!! CCAAATTTCTAAATTGATTT+AGG + chr5_3:14903895-14903914 Msa0801220:intron 20.0%
!!! CCTTTTTTTTTCTTGTTTTA+CGG + chr5_3:14903981-14904000 Msa0801220:intron 20.0%
!!! ATTTAGATTTGAGATTGTAA+TGG - chr5_3:14904237-14904256 None:intergenic 20.0%
!!! AATCTGGTTTGTATAATTTA+GGG - chr5_3:14904263-14904282 None:intergenic 20.0%
!!! TAATCTGGTTTGTATAATTT+AGG - chr5_3:14904264-14904283 None:intergenic 20.0%
!! ATAAAATAGTAGAGTAAACT+AGG - chr5_3:14904448-14904467 None:intergenic 20.0%
!! TCTTGCATGATAAATAATAA+GGG - chr5_3:14904492-14904511 None:intergenic 20.0%
!! TTCTTGCATGATAAATAATA+AGG - chr5_3:14904493-14904512 None:intergenic 20.0%
!!! AAGTATTTTTTAGTTGTAAG+TGG + chr5_3:14904512-14904531 Msa0801220:intron 20.0%
!! AATGTGTAATAATCTTAAAC+CGG - chr5_3:14905160-14905179 None:intergenic 20.0%
! AGAAATTGGATTCGATTTAT+GGG + chr5_3:14902636-14902655 Msa0801220:CDS 25.0%
! TAGGATTATTAATAGTGATG+AGG + chr5_3:14902733-14902752 Msa0801220:CDS 25.0%
! AATTAAGAAGGATGTTAAGA+GGG + chr5_3:14902775-14902794 Msa0801220:CDS 25.0%
! TTAAGACAATATAAGTGCAA+AGG - chr5_3:14903484-14903503 None:intergenic 25.0%
!!! AAATTGATTTAGGGCATTTT+AGG + chr5_3:14903905-14903924 Msa0801220:intron 25.0%
!!! AATTGATTTAGGGCATTTTA+GGG + chr5_3:14903906-14903925 Msa0801220:intron 25.0%
! CCGTAAAACAAGAAAAAAAA+AGG - chr5_3:14903984-14904003 None:intergenic 25.0%
!!! GTTCTCTATCTTTTGTTTTT+TGG + chr5_3:14904034-14904053 Msa0801220:intron 25.0%
! CATCTTAAGTTATCAAAACT+TGG + chr5_3:14904299-14904318 Msa0801220:intron 25.0%
!!! GTTTGTTTTTTGCAGAATAA+TGG + chr5_3:14904780-14904799 Msa0801220:intron 25.0%
! AATTTGACAACTTCTCTAAA+TGG + chr5_3:14905041-14905060 Msa0801220:CDS 25.0%
! TAACCACACAAAAAAAACTA+TGG - chr5_3:14905103-14905122 None:intergenic 25.0%
! GAGATGAATACAATGTGTTT+TGG - chr5_3:14901716-14901735 None:intergenic 30.0%
!! AGTTTTTGGAAATGTTGGAA+TGG - chr5_3:14901983-14902002 None:intergenic 30.0%
TCAGTACCATAAACAATCAA+CGG - chr5_3:14902482-14902501 None:intergenic 30.0%
! TTGATTGTTTATGGTACTGA+AGG + chr5_3:14902482-14902501 Msa0801220:CDS 30.0%
! TGATTGTTTATGGTACTGAA+GGG + chr5_3:14902483-14902502 Msa0801220:CDS 30.0%
!! TAAGTCTGCTTTTGAGAAAT+TGG + chr5_3:14902622-14902641 Msa0801220:CDS 30.0%
GAGAAATTGGATTCGATTTA+TGG + chr5_3:14902635-14902654 Msa0801220:CDS 30.0%
CTCTTAACATCCTTCTTAAT+TGG - chr5_3:14902776-14902795 None:intergenic 30.0%
CAATTAAGAAGGATGTTAAG+AGG + chr5_3:14902774-14902793 Msa0801220:CDS 30.0%
AGAATCTTAATGTTATGCTC+AGG + chr5_3:14902822-14902841 Msa0801220:CDS 30.0%
TTTGATTCTATCGTGAAGAT+AGG + chr5_3:14903298-14903317 Msa0801220:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_3:14903458-14903477 Msa0801220:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_3:14903458-14903477 Msa0801220:intron 30.0%
GTAATCATAGTAGTCAATAG+TGG + chr5_3:14903700-14903719 Msa0801220:intron 30.0%
! ACCAAATAGACTTTGTTGTA+TGG + chr5_3:14903937-14903956 Msa0801220:intron 30.0%
ACCATACAACAAAGTCTATT+TGG - chr5_3:14903941-14903960 None:intergenic 30.0%
! TTTGTTTATACTCCCACTTT+TGG + chr5_3:14904146-14904165 Msa0801220:intron 30.0%
!! TTGTTTATACTCCCACTTTT+GGG + chr5_3:14904147-14904166 Msa0801220:intron 30.0%
ACATTCATAGTAGTTGATCT+CGG - chr5_3:14904195-14904214 None:intergenic 30.0%
! TTAGTTGTAAGTGGATTTGA+TGG + chr5_3:14904521-14904540 Msa0801220:intron 30.0%
AATTAATAACTGCAATTCCC+AGG - chr5_3:14904562-14904581 None:intergenic 30.0%
!!! AGTGGATGAGTTGATTTTTT+GGG + chr5_3:14904634-14904653 Msa0801220:intron 30.0%
!!! GTTGATTTTTTGGGGAATAA+TGG + chr5_3:14904643-14904662 Msa0801220:intron 30.0%
!!! GCAGAATAATGGATGAATTT+TGG + chr5_3:14904791-14904810 Msa0801220:intron 30.0%
AACTATGGCGAACATATAAA+TGG - chr5_3:14905088-14905107 None:intergenic 30.0%
ATATATTCCAAAACTACGCA+AGG - chr5_3:14905350-14905369 None:intergenic 30.0%
TATTGGTAAGAATCATAGTG+AGG + chr5_3:14905375-14905394 Msa0801220:three_prime_UTR 30.0%
!!! AAGAAGGGTTTGTTTTGTGA+TGG - chr5_3:14901740-14901759 None:intergenic 35.0%
!! TCTGGAGTTTTTGGAAATGT+TGG - chr5_3:14901988-14902007 None:intergenic 35.0%
TGAAGGAGTAGAGAAAACTA+AGG + chr5_3:14902334-14902353 Msa0801220:CDS 35.0%
GAAAACTAAGGAGGCTATTA+AGG + chr5_3:14902346-14902365 Msa0801220:CDS 35.0%
!!! ATTAAGGTTTTGAAGCAGGT+TGG + chr5_3:14902362-14902381 Msa0801220:CDS 35.0%
! GATTGTTTATGGTACTGAAG+GGG + chr5_3:14902484-14902503 Msa0801220:CDS 35.0%
!! AAGGCTTTTAGGAATATTCC+TGG + chr5_3:14902518-14902537 Msa0801220:CDS 35.0%
ACATTAGTAATCTCAACACC+AGG - chr5_3:14902539-14902558 None:intergenic 35.0%
! TGGTGTTGAGATTACTAATG+TGG + chr5_3:14902538-14902557 Msa0801220:CDS 35.0%
TTGAGATTACTAATGTGGAG+AGG + chr5_3:14902543-14902562 Msa0801220:CDS 35.0%
ATTTGGGTAGGTTTGTGATT+TGG + chr5_3:14902597-14902616 Msa0801220:CDS 35.0%
GATTTATGGGTCGTTTGATA+AGG + chr5_3:14902649-14902668 Msa0801220:CDS 35.0%
!! AGAAAGGGTATGTTTTACCT+AGG + chr5_3:14902684-14902703 Msa0801220:CDS 35.0%
!! GAAAGGGTATGTTTTACCTA+GGG + chr5_3:14902685-14902704 Msa0801220:CDS 35.0%
! TGGTGAATTCTGATTTGACT+AGG + chr5_3:14902714-14902733 Msa0801220:CDS 35.0%
CATTCAAAAATCAAGCACAG+TGG - chr5_3:14902971-14902990 None:intergenic 35.0%
!! GTTGATTTGGTATTGTTCCT+AGG + chr5_3:14903121-14903140 Msa0801220:intron 35.0%
ACTAGAACATACATCTCCTT+TGG - chr5_3:14903153-14903172 None:intergenic 35.0%
GATTTGAATTGTGATCTTGC+TGG + chr5_3:14903181-14903200 Msa0801220:intron 35.0%
ATTCTATCGTGAAGATAGGA+CGG + chr5_3:14903302-14903321 Msa0801220:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_3:14903422-14903441 Msa0801220:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_3:14903457-14903476 Msa0801220:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_3:14903422-14903441 Msa0801220:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_3:14903457-14903476 Msa0801220:intron 35.0%
AAATCAAATAGCGGCTAAAG+CGG - chr5_3:14903824-14903843 None:intergenic 35.0%
!! TGTTTATACTCCCACTTTTG+GGG + chr5_3:14904148-14904167 Msa0801220:intron 35.0%
AGTAAAGAGCAGAATATGCA+AGG - chr5_3:14904407-14904426 None:intergenic 35.0%
!!! GAGTGGATGAGTTGATTTTT+TGG + chr5_3:14904633-14904652 Msa0801220:intron 35.0%
!!! GTGGATGAGTTGATTTTTTG+GGG + chr5_3:14904635-14904654 Msa0801220:intron 35.0%
! AGAAAGAAGCATGGAACATA+TGG - chr5_3:14904691-14904710 None:intergenic 35.0%
AACACAATCAGAAAGAAGCA+TGG - chr5_3:14904700-14904719 None:intergenic 35.0%
ACACGGTTGAATGTCTAAAT+TGG - chr5_3:14904740-14904759 None:intergenic 35.0%
TCCACTCATCTAAATACACA+CGG - chr5_3:14904757-14904776 None:intergenic 35.0%
! ATAATCAGAATCTGAGACCA+TGG - chr5_3:14905017-14905036 None:intergenic 35.0%
ACAACTTCTCTAAATGGCTA+GGG + chr5_3:14905047-14905066 Msa0801220:CDS 35.0%
!!! TCGCCATAGTTTTTTTTGTG+TGG + chr5_3:14905097-14905116 Msa0801220:three_prime_UTR 35.0%
!!! TTTGGTTTTTTGTCGTTCTC+CGG + chr5_3:14905138-14905157 Msa0801220:three_prime_UTR 35.0%
!! AATTTGTTATATGCTGTCCC+TGG + chr5_3:14905268-14905287 Msa0801220:three_prime_UTR 35.0%
! AACACTAGCTAGGGTTTTTG+CGG - chr5_3:14901797-14901816 None:intergenic 40.0%
TAGGGTTTGGATAGTGACAA+GGG - chr5_3:14901871-14901890 None:intergenic 40.0%
CACTATCCAAACCCTAGAAT+CGG + chr5_3:14901875-14901894 Msa0801220:CDS 40.0%
!! ACATTTCCGATTCTAGGGTT+TGG - chr5_3:14901884-14901903 None:intergenic 40.0%
!! GTAAGGTTGTCTGGAGTTTT+TGG - chr5_3:14901997-14902016 None:intergenic 40.0%
AGCTTCTGCTATTCCTTCAT+TGG + chr5_3:14902247-14902266 Msa0801220:CDS 40.0%
AGGAGTAGAGAAAACTAAGG+AGG + chr5_3:14902337-14902356 Msa0801220:CDS 40.0%
!!! GGCTATTAAGGTTTTGAAGC+AGG + chr5_3:14902358-14902377 Msa0801220:CDS 40.0%
! TGCTTTTGCTGATGCTGAAA+AGG + chr5_3:14902385-14902404 Msa0801220:CDS 40.0%
AGGCGATATATATCGCGTAA+GGG + chr5_3:14902455-14902474 Msa0801220:CDS 40.0%
! AAGGGACCGTTGATTGTTTA+TGG + chr5_3:14902473-14902492 Msa0801220:CDS 40.0%
!!! GAATCTTTTGAAGCTTGCAC+CGG + chr5_3:14902568-14902587 Msa0801220:CDS 40.0%
!!! AATCTTTTGAAGCTTGCACC+GGG + chr5_3:14902569-14902588 Msa0801220:CDS 40.0%
! TGTTTTACCTAGGGCTAAGA+TGG + chr5_3:14902694-14902713 Msa0801220:CDS 40.0%
TGTTGTGAGGCCAATTAAGA+AGG + chr5_3:14902763-14902782 Msa0801220:CDS 40.0%
TGAAAGGGTTAAGGCTAAGA+AGG + chr5_3:14902895-14902914 Msa0801220:CDS 40.0%
GAAGAGAAAGACTGTCTCTA+AGG + chr5_3:14902931-14902950 Msa0801220:CDS 40.0%
TTCTATCGTGAAGATAGGAC+GGG + chr5_3:14903303-14903322 Msa0801220:intron 40.0%
TAGTAGTTGATCTCGGAAAG+TGG - chr5_3:14904188-14904207 None:intergenic 40.0%
CATCCACTCATCTAAACACA+CGG - chr5_3:14904622-14904641 None:intergenic 40.0%
!!! GGGGAATAATGGATGACTTT+TGG + chr5_3:14904654-14904673 Msa0801220:intron 40.0%
GAAGCATGGAACATATGGAA+TGG - chr5_3:14904686-14904705 None:intergenic 40.0%
ACCGTGTGTATTTAGATGAG+TGG + chr5_3:14904753-14904772 Msa0801220:intron 40.0%
AGAAAGAAGCAGGGAACATA+TGG - chr5_3:14904828-14904847 None:intergenic 40.0%
AACACAGTCAGAAAGAAGCA+GGG - chr5_3:14904837-14904856 None:intergenic 40.0%
AAACACAGTCAGAAAGAAGC+AGG - chr5_3:14904838-14904857 None:intergenic 40.0%
GAAAGCTTGGTATAACACCA+TGG + chr5_3:14904997-14905016 Msa0801220:CDS 40.0%
GACAACTTCTCTAAATGGCT+AGG + chr5_3:14905046-14905065 Msa0801220:CDS 40.0%
CAACTTCTCTAAATGGCTAG+GGG + chr5_3:14905048-14905067 Msa0801220:CDS 40.0%
TACACATTATGCAGACAGCA+TGG + chr5_3:14905172-14905191 Msa0801220:three_prime_UTR 40.0%
TAAGGTATGCACCTAGCTAT+CGG + chr5_3:14905296-14905315 Msa0801220:three_prime_UTR 40.0%
GTGTGTGTGTGTGAGAAGAA+GGG - chr5_3:14901755-14901774 None:intergenic 45.0%
TGTGTGTGTGTGTGAGAAGA+AGG - chr5_3:14901756-14901775 None:intergenic 45.0%
! ACACTAGCTAGGGTTTTTGC+GGG - chr5_3:14901796-14901815 None:intergenic 45.0%
GGAGGAAGAAACACTAGCTA+GGG - chr5_3:14901806-14901825 None:intergenic 45.0%
AGGGTTTGGATAGTGACAAG+GGG - chr5_3:14901870-14901889 None:intergenic 45.0%
CTAGGGTTTGGATAGTGACA+AGG - chr5_3:14901872-14901891 None:intergenic 45.0%
GGTGGACATTTCCGATTCTA+GGG - chr5_3:14901889-14901908 None:intergenic 45.0%
! TGGAAGGGTTGTTGGTGAAT+CGG - chr5_3:14901910-14901929 None:intergenic 45.0%
ATTGAAGCACGCATGACATC+GGG - chr5_3:14901936-14901955 None:intergenic 45.0%
GATTGAAGCACGCATGACAT+CGG - chr5_3:14901937-14901956 None:intergenic 45.0%
ACCAAACCTCAGCTGAATCA+TGG + chr5_3:14902039-14902058 Msa0801220:CDS 45.0%
CCAAACCTCAGCTGAATCAT+GGG + chr5_3:14902040-14902059 Msa0801220:CDS 45.0%
CAAACCTCAGCTGAATCATG+GGG + chr5_3:14902041-14902060 Msa0801220:CDS 45.0%
!! GCTTTTGGTAACATGTGTCG+TGG + chr5_3:14902131-14902150 Msa0801220:CDS 45.0%
! TTTGGTAACATGTGTCGTGG+TGG + chr5_3:14902134-14902153 Msa0801220:CDS 45.0%
GTAGAATGTTTGCTCCCACA+AGG + chr5_3:14902156-14902175 Msa0801220:CDS 45.0%
CATTTCCTCCAGATCCTTGT+GGG - chr5_3:14902173-14902192 None:intergenic 45.0%
CCAACAACAAGAGGAAACTC+AGG - chr5_3:14902305-14902324 None:intergenic 45.0%
! CCTGAGTTTCCTCTTGTTGT+TGG + chr5_3:14902302-14902321 Msa0801220:CDS 45.0%
AAAAGGCCAAGGATAGCCTT+GGG + chr5_3:14902402-14902421 Msa0801220:CDS 45.0%
TCTAATCCCAAGGCTATCCT+TGG - chr5_3:14902411-14902430 None:intergenic 45.0%
CAGGCGATATATATCGCGTA+AGG + chr5_3:14902454-14902473 Msa0801220:CDS 45.0%
TGGGTCGTTTGATAAGGCTT+CGG + chr5_3:14902655-14902674 Msa0801220:CDS 45.0%
AAGGCTTCGGAGAAGAAGAA+AGG + chr5_3:14902668-14902687 Msa0801220:CDS 45.0%
AGGCTTCGGAGAAGAAGAAA+GGG + chr5_3:14902669-14902688 Msa0801220:CDS 45.0%
GAATTCACCATCTTAGCCCT+AGG - chr5_3:14902704-14902723 None:intergenic 45.0%
CTCTTAGCAGTCTTGGCATA+AGG - chr5_3:14902854-14902873 None:intergenic 45.0%
CTTATGCCAAGACTGCTAAG+AGG + chr5_3:14902852-14902871 Msa0801220:CDS 45.0%
! TTTGCTTGCTGAGGCTGAAA+GGG + chr5_3:14902880-14902899 Msa0801220:CDS 45.0%
TGTTCCTAGGATTCTGCCAA+AGG + chr5_3:14903134-14903153 Msa0801220:intron 45.0%
ATCTCCTTTGGCAGAATCCT+AGG - chr5_3:14903141-14903160 None:intergenic 45.0%
TCTATCGTGAAGATAGGACG+GGG + chr5_3:14903304-14903323 Msa0801220:intron 45.0%
GGATTCTCATCATGCTCTTG+AGG + chr5_3:14904320-14904339 Msa0801220:intron 45.0%
! AGTGGATTTGATGGCAGCTT+TGG + chr5_3:14904530-14904549 Msa0801220:intron 45.0%
! TGGCAGCTTTGGTAAATTCC+TGG + chr5_3:14904541-14904560 Msa0801220:intron 45.0%
! GGCAGCTTTGGTAAATTCCT+GGG + chr5_3:14904542-14904561 Msa0801220:intron 45.0%
CAACCGTGTGTTTAGATGAG+TGG + chr5_3:14904616-14904635 Msa0801220:intron 45.0%
GAAGCAGGGAACATATGGAA+TGG - chr5_3:14904823-14904842 None:intergenic 45.0%
TGTGTTCCTTTCCCTCTTTC+AGG + chr5_3:14904946-14904965 Msa0801220:intron 45.0%
AGAAGCTTCCTCCTGAAAGA+GGG - chr5_3:14904960-14904979 None:intergenic 45.0%
AGCTAGGTGCATACCTTACT+TGG - chr5_3:14905294-14905313 None:intergenic 45.0%
AAGGTATGCACCTAGCTATC+GGG + chr5_3:14905297-14905316 Msa0801220:three_prime_UTR 45.0%
! GTGTAAGCCTTGCGTAGTTT+TGG + chr5_3:14905340-14905359 Msa0801220:three_prime_UTR 45.0%
GGGAGGAAGAAACACTAGCT+AGG - chr5_3:14901807-14901826 None:intergenic 50.0%
TTTCTTCCTCCCTCCACCAA+TGG + chr5_3:14901815-14901834 Msa0801220:exon 50.0%
CGGTGGACATTTCCGATTCT+AGG - chr5_3:14901890-14901909 None:intergenic 50.0%
! AAGGGTTGTTGGTGAATCGG+TGG - chr5_3:14901907-14901926 None:intergenic 50.0%
CATGACATCGGGGATTGGAA+GGG - chr5_3:14901925-14901944 None:intergenic 50.0%
TTGAAGCACGCATGACATCG+GGG - chr5_3:14901935-14901954 None:intergenic 50.0%
CGAAGTTGACGATGTCAGGA+CGG - chr5_3:14901959-14901978 None:intergenic 50.0%
TGGACGAAGTTGACGATGTC+AGG - chr5_3:14901963-14901982 None:intergenic 50.0%
!! AGGTTTGGTGACCAGCTTTC+CGG - chr5_3:14902028-14902047 None:intergenic 50.0%
CCCATGATTCAGCTGAGGTT+TGG - chr5_3:14902043-14902062 None:intergenic 50.0%
TCAGCTGAATCATGGGGTAC+CGG + chr5_3:14902047-14902066 Msa0801220:CDS 50.0%
GATACGTGAAACAGCACGTC+CGG - chr5_3:14902069-14902088 None:intergenic 50.0%
TGTTTGCTCCCACAAGGATC+TGG + chr5_3:14902162-14902181 Msa0801220:CDS 50.0%
CCATTTCCTCCAGATCCTTG+TGG - chr5_3:14902174-14902193 None:intergenic 50.0%
CCACAAGGATCTGGAGGAAA+TGG + chr5_3:14902171-14902190 Msa0801220:CDS 50.0%
GGATCTGGAGGAAATGGCAT+AGG + chr5_3:14902177-14902196 Msa0801220:CDS 50.0%
CCACGAGCAAGAACCAATGA+AGG - chr5_3:14902263-14902282 None:intergenic 50.0%
!! CCTTCATTGGTTCTTGCTCG+TGG + chr5_3:14902260-14902279 Msa0801220:CDS 50.0%
TGGTTCTTGCTCGTGGTCAT+AGG + chr5_3:14902267-14902286 Msa0801220:CDS 50.0%
GCAGCATCACCAACAACAAG+AGG - chr5_3:14902314-14902333 None:intergenic 50.0%
!! GTTGTTGGTGATGCTGCTGA+AGG + chr5_3:14902317-14902336 Msa0801220:CDS 50.0%
TGCTGATGCTGAAAAGGCCA+AGG + chr5_3:14902391-14902410 Msa0801220:CDS 50.0%
GAAAAGGCCAAGGATAGCCT+TGG + chr5_3:14902401-14902420 Msa0801220:CDS 50.0%
! GATAGCCTTGGGATTAGACC+CGG + chr5_3:14902413-14902432 Msa0801220:CDS 50.0%
! ATAGCCTTGGGATTAGACCC+GGG + chr5_3:14902414-14902433 Msa0801220:CDS 50.0%
! TTATGGTACTGAAGGGGCGA+AGG + chr5_3:14902490-14902509 Msa0801220:CDS 50.0%
! CGAAGGCGGTTAAGGCTTTT+AGG + chr5_3:14902507-14902526 Msa0801220:CDS 50.0%
!!! TTTTGAAGCTTGCACCGGGT+GGG + chr5_3:14902573-14902592 Msa0801220:CDS 50.0%
!! ATGAGGTGCAGAGTGTTGTG+AGG + chr5_3:14902750-14902769 Msa0801220:CDS 50.0%
TGCCAAGACTGCTAAGAGGA+TGG + chr5_3:14902856-14902875 Msa0801220:CDS 50.0%
AGCCATCCTCTTAGCAGTCT+TGG - chr5_3:14902861-14902880 None:intergenic 50.0%
! CTTTGCTTGCTGAGGCTGAA+AGG + chr5_3:14902879-14902898 Msa0801220:CDS 50.0%
TGCTGAGGCTGAAAGGGTTA+AGG + chr5_3:14902886-14902905 Msa0801220:CDS 50.0%
CGGGGATCTCAATTGCATGA+AGG + chr5_3:14903322-14903341 Msa0801220:intron 50.0%
TCTCGGAAAGTGGAGCATAG+CGG - chr5_3:14904178-14904197 None:intergenic 50.0%
GTTCCTTTCCCTCTTTCAGG+AGG + chr5_3:14904949-14904968 Msa0801220:intron 50.0%
CTTCCTCCTGAAAGAGGGAA+AGG - chr5_3:14904955-14904974 None:intergenic 50.0%
CAGAAGCTTCCTCCTGAAAG+AGG - chr5_3:14904961-14904980 None:intergenic 50.0%
GTGCATACCTTACTTGGCCA+GGG - chr5_3:14905288-14905307 None:intergenic 50.0%
TCGGGGATTGGAAGGGTTGT+TGG - chr5_3:14901918-14901937 None:intergenic 55.0%
GCATGACATCGGGGATTGGA+AGG - chr5_3:14901926-14901945 None:intergenic 55.0%
GGTACCCCATGATTCAGCTG+AGG - chr5_3:14902048-14902067 None:intergenic 55.0%
TCACGTATCCCTCGTGTTGC+TGG + chr5_3:14902080-14902099 Msa0801220:CDS 55.0%
CAAAAGCAGCCTGACCAGCA+CGG - chr5_3:14902118-14902137 None:intergenic 55.0%
TTGCTCCCACAAGGATCTGG+AGG + chr5_3:14902165-14902184 Msa0801220:CDS 55.0%
CTTGGGATTAGACCCGGGAA+GGG + chr5_3:14902419-14902438 Msa0801220:CDS 55.0%
TTGGGATTAGACCCGGGAAG+GGG + chr5_3:14902420-14902439 Msa0801220:CDS 55.0%
TTCCTCATCTTCCCCTTCCC+GGG - chr5_3:14902434-14902453 None:intergenic 55.0%
GTTCCTCATCTTCCCCTTCC+CGG - chr5_3:14902435-14902454 None:intergenic 55.0%
GGAAGGGGAAGATGAGGAAC+AGG + chr5_3:14902435-14902454 Msa0801220:CDS 55.0%
!!! CTTTTGAAGCTTGCACCGGG+TGG + chr5_3:14902572-14902591 Msa0801220:CDS 55.0%
AACCTACCCAAATGCCCACC+CGG - chr5_3:14902590-14902609 None:intergenic 55.0%
! GAGGATGGCTTTGCTTGCTG+AGG + chr5_3:14902871-14902890 Msa0801220:CDS 55.0%
CTTATTCCGCACCGCTACGA+CGG - chr5_3:14903748-14903767 None:intergenic 55.0%
AGCGGTGCGGAATAAGACAG+CGG + chr5_3:14903752-14903771 Msa0801220:intron 55.0%
GGTCGCTTCAGCTGCTATAG+CGG + chr5_3:14903773-14903792 Msa0801220:intron 55.0%
TAGCGGCTGACCCCAAAAGT+GGG - chr5_3:14904161-14904180 None:intergenic 55.0%
ATAGCGGCTGACCCCAAAAG+TGG - chr5_3:14904162-14904181 None:intergenic 55.0%
GGAGGAAGCTTCTGCCATCA+AGG + chr5_3:14904967-14904986 Msa0801220:intron 55.0%
CTTCTGCCATCAAGGCTGCA+GGG + chr5_3:14904975-14904994 Msa0801220:CDS 55.0%
AGCTTTCCCTGCAGCCTTGA+TGG - chr5_3:14904984-14905003 None:intergenic 55.0%
TCAAGGCTGCAGGGAAAGCT+TGG + chr5_3:14904984-14905003 Msa0801220:CDS 55.0%
ATGCTGTCCCTGGCCAAGTA+AGG + chr5_3:14905278-14905297 Msa0801220:three_prime_UTR 55.0%
GGTGCATACCTTACTTGGCC+AGG - chr5_3:14905289-14905308 None:intergenic 55.0%
TCAGCAGACACCCGATAGCT+AGG - chr5_3:14905310-14905329 None:intergenic 55.0%
GCACGCATGACATCGGGGAT+TGG - chr5_3:14901930-14901949 None:intergenic 60.0%
GCTGACGGCGTAAGGTTGTC+TGG - chr5_3:14902006-14902025 None:intergenic 60.0%
GACAACCTTACGCCGTCAGC+CGG + chr5_3:14902006-14902025 Msa0801220:CDS 60.0%
GTGACCAGCTTTCCGGCTGA+CGG - chr5_3:14902021-14902040 None:intergenic 60.0%
! CGTATCCCTCGTGTTGCTGG+TGG + chr5_3:14902083-14902102 Msa0801220:CDS 60.0%
! ATCCCTCGTGTTGCTGGTGG+TGG + chr5_3:14902086-14902105 Msa0801220:CDS 60.0%
! TCCCTCGTGTTGCTGGTGGT+GGG + chr5_3:14902087-14902106 Msa0801220:CDS 60.0%
TCCCACCACCAGCAACACGA+GGG - chr5_3:14902091-14902110 None:intergenic 60.0%
!! CGTGCTGGTCAGGCTGCTTT+TGG + chr5_3:14902116-14902135 Msa0801220:CDS 60.0%
CCTTCCCGGGTCTAATCCCA+AGG - chr5_3:14902421-14902440 None:intergenic 60.0%
CCTTGGGATTAGACCCGGGA+AGG + chr5_3:14902418-14902437 Msa0801220:CDS 60.0%
! TGGTACTGAAGGGGCGAAGG+CGG + chr5_3:14902493-14902512 Msa0801220:CDS 60.0%
TGAAGGGGCGAAGGCGGTTA+AGG + chr5_3:14902499-14902518 Msa0801220:CDS 60.0%
CTTGCACCGGGTGGGCATTT+GGG + chr5_3:14902581-14902600 Msa0801220:CDS 60.0%
CGCTACGACGGTTAGCGTAG+CGG - chr5_3:14903736-14903755 None:intergenic 60.0%
CGCTACGCTAACCGTCGTAG+CGG + chr5_3:14903734-14903753 Msa0801220:intron 60.0%
CAGCTGCTATAGCGGCGTAG+TGG + chr5_3:14903781-14903800 Msa0801220:intron 60.0%
! GCTATAGCGGCGTAGTGGAG+CGG + chr5_3:14903786-14903805 Msa0801220:intron 60.0%
GCTTCTGCCATCAAGGCTGC+AGG + chr5_3:14904974-14904993 Msa0801220:CDS 60.0%
TGCTGCTGCTGCTGCTGCTG+CGG - chr5_3:14901844-14901863 None:intergenic 65.0%
GCTTTCCGGCTGACGGCGTA+AGG - chr5_3:14902014-14902033 None:intergenic 65.0%
TACGCCGTCAGCCGGAAAGC+TGG + chr5_3:14902014-14902033 Msa0801220:CDS 65.0%
GTCCCACCACCAGCAACACG+AGG - chr5_3:14902092-14902111 None:intergenic 65.0%
AGCAGCCTGACCAGCACGGT+GGG - chr5_3:14902114-14902133 None:intergenic 65.0%
AAGCAGCCTGACCAGCACGG+TGG - chr5_3:14902115-14902134 None:intergenic 65.0%
GACCCGGGAAGGGGAAGATG+AGG + chr5_3:14902429-14902448 Msa0801220:CDS 65.0%
GCTTGCACCGGGTGGGCATT+TGG + chr5_3:14902580-14902599 Msa0801220:CDS 65.0%
CACCGGGTGGGCATTTGGGT+AGG + chr5_3:14902585-14902604 Msa0801220:CDS 65.0%
CGCTAACCGTCGTAGCGGTG+CGG + chr5_3:14903739-14903758 Msa0801220:intron 65.0%
CTGCGGCGGCCATTGGTGGA+GGG - chr5_3:14901827-14901846 None:intergenic 70.0%
TGCTGCTGCTGCTGCTGCGG+CGG - chr5_3:14901841-14901860 None:intergenic 70.0%
! TGGGACCCACCGTGCTGGTC+AGG + chr5_3:14902106-14902125 Msa0801220:CDS 70.0%
GTTAGCGTAGCGGCGACGCG+TGG - chr5_3:14903726-14903745 None:intergenic 70.0%
! AGCGGCGTAGTGGAGCGGAG+TGG + chr5_3:14903791-14903810 Msa0801220:intron 70.0%
CGGCGGCCATTGGTGGAGGG+AGG - chr5_3:14901824-14901843 None:intergenic 75.0%
GCTGCGGCGGCCATTGGTGG+AGG - chr5_3:14901828-14901847 None:intergenic 75.0%
GCTGCTGCGGCGGCCATTGG+TGG - chr5_3:14901831-14901850 None:intergenic 75.0%
GCTGCTGCTGCGGCGGCCAT+TGG - chr5_3:14901834-14901853 None:intergenic 75.0%
!! GGTGGTGGGACCCACCGTGC+TGG + chr5_3:14902101-14902120 Msa0801220:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 14901713 14905398 14901713 ID=Msa0801220;Name=Msa0801220
chr5_3 mRNA 14901713 14905398 14901713 ID=Msa0801220-mRNA-1;Parent=Msa0801220;Name=Msa0801220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|2|317|410
chr5_3 exon 14901713 14902952 14901713 ID=Msa0801220-mRNA-1:exon:6268;Parent=Msa0801220-mRNA-1
chr5_3 exon 14904968 14905398 14904968 ID=Msa0801220-mRNA-1:exon:6269;Parent=Msa0801220-mRNA-1
chr5_3 five_prime_UTR 14901713 14901833 14901713 ID=Msa0801220-mRNA-1:five_prime_utr;Parent=Msa0801220-mRNA-1
chr5_3 CDS 14901834 14902952 14901834 ID=Msa0801220-mRNA-1:cds;Parent=Msa0801220-mRNA-1
chr5_3 CDS 14904968 14905081 14904968 ID=Msa0801220-mRNA-1:cds;Parent=Msa0801220-mRNA-1
chr5_3 three_prime_UTR 14905082 14905398 14905082 ID=Msa0801220-mRNA-1:three_prime_utr;Parent=Msa0801220-mRNA-1
Gene Sequence

>Msa0801220

ATGGCCGCCGCAGCAGCAGCAGCAGCAGCACGTCCCCTTGTCACTATCCAAACCCTAGAATCGGAAATGTCCACCGATTCACCAACAACCCTTCCAATCCCCGATGTCATGCGTGCTTCAATCCGTCCTGACATCGTCAACTTCGTCCATTCCAACATTTCCAAAAACTCCAGACAACCTTACGCCGTCAGCCGGAAAGCTGGTCACCAAACCTCAGCTGAATCATGGGGTACCGGACGTGCTGTTTCACGTATCCCTCGTGTTGCTGGTGGTGGGACCCACCGTGCTGGTCAGGCTGCTTTTGGTAACATGTGTCGTGGTGGTAGAATGTTTGCTCCCACAAGGATCTGGAGGAAATGGCATAGGAAGATTAATGTTAATCAGAAACGTTATGCTGTTGTTTCAGCTATAGCAGCTTCTGCTATTCCTTCATTGGTTCTTGCTCGTGGTCATAGGATTGAGACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATGCTGCTGAAGGAGTAGAGAAAACTAAGGAGGCTATTAAGGTTTTGAAGCAGGTTGGTGCTTTTGCTGATGCTGAAAAGGCCAAGGATAGCCTTGGGATTAGACCCGGGAAGGGGAAGATGAGGAACAGGCGATATATATCGCGTAAGGGACCGTTGATTGTTTATGGTACTGAAGGGGCGAAGGCGGTTAAGGCTTTTAGGAATATTCCTGGTGTTGAGATTACTAATGTGGAGAGGTTGAATCTTTTGAAGCTTGCACCGGGTGGGCATTTGGGTAGGTTTGTGATTTGGACTAAGTCTGCTTTTGAGAAATTGGATTCGATTTATGGGTCGTTTGATAAGGCTTCGGAGAAGAAGAAAGGGTATGTTTTACCTAGGGCTAAGATGGTGAATTCTGATTTGACTAGGATTATTAATAGTGATGAGGTGCAGAGTGTTGTGAGGCCAATTAAGAAGGATGTTAAGAGGGCTACGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTCAGGCTTAATCCTTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGAAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTATAACACCATGGTCTCAGATTCTGATTATGCTGAATTTGACAACTTCTCTAAATGGCTAGGGGTTTCTCAGTAA
Protein sequence

>Msa0801220

MAAAAAAAAARPLVTIQTLESEMSTDSPTTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ*