AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648220 MtrunA17_Chr4g0040341 97.844 371 7 1 1 370 1 371 0.0 736
Msa0648220 MtrunA17_Chr3g0088301 74.680 391 74 4 1 369 1 388 0.0 545
Msa0648220 MtrunA17_Chr8g0352031 74.599 374 80 5 1 369 1 364 0.0 518
Msa0648220 MtrunA17_Chr2g0328891 73.243 370 88 4 1 369 2 361 2.83e-180 504
Msa0648220 MtrunA17_Chr8g0393031 58.537 287 119 0 73 359 17 303 1.01e-128 372
Msa0648220 MtrunA17_Chr3g0135801 39.796 294 166 6 70 357 30 318 2.59e-68 218
Msa0648220 MtrunA17_Chr6g0488081 29.431 299 190 6 70 357 15 303 3.38e-34 128
Msa0648220 MtrunA17_Chr3g0135861 30.990 313 174 10 70 357 31 326 9.77e-31 119
Msa0648220 MtrunA17_Chr1g0149111 29.236 301 186 10 65 360 132 410 1.38e-29 118
Msa0648220 MtrunA17_Chr1g0149111 27.273 209 131 6 62 267 221 411 1.98e-14 74.3
Msa0648220 MtrunA17_Chr3g0137941 28.881 277 173 8 77 349 125 381 4.64e-28 113
Msa0648220 MtrunA17_Chr3g0137941 28.571 196 120 5 75 267 216 394 1.46e-15 77.4
Msa0648220 MtrunA17_Chr4g0006851 33.099 284 167 8 74 354 89 352 1.03e-27 112
Msa0648220 MtrunA17_Chr7g0242311 31.095 283 164 8 85 360 98 356 6.17e-27 110
Msa0648220 MtrunA17_Chr5g0396801 28.660 321 175 12 74 360 38 338 7.27e-27 109
Msa0648220 MtrunA17_Chr5g0396801 24.107 224 153 4 54 266 121 338 2.11e-11 64.7
Msa0648220 MtrunA17_Chr8g0347451 29.630 297 172 10 74 344 51 336 5.31e-26 107
Msa0648220 MtrunA17_Chr8g0347451 26.601 203 130 5 77 266 157 353 2.08e-12 67.8
Msa0648220 MtrunA17_Chr4g0063561 28.058 278 180 6 74 349 123 382 4.50e-25 105
Msa0648220 MtrunA17_Chr4g0063561 28.019 207 127 5 60 263 204 391 1.31e-16 80.5
Msa0648220 MtrunA17_Chr7g0240341 28.247 308 202 8 64 360 15 314 1.34e-24 102
Msa0648220 MtrunA17_Chr5g0436041 27.097 310 206 8 60 360 23 321 6.84e-23 97.8
Msa0648220 MtrunA17_Chr2g0296061 27.358 318 186 8 71 354 12 318 1.26e-22 97.1
Msa0648220 MtrunA17_Chr8g0385571 28.723 282 177 9 74 349 227 490 2.50e-22 98.2
Msa0648220 MtrunA17_Chr7g0252401 28.772 285 170 8 74 349 207 467 9.68e-22 96.3
Msa0648220 MtrunA17_Chr4g0067231 26.087 322 191 8 71 356 11 321 1.57e-21 94.0
Msa0648220 MtrunA17_Chr3g0131501 28.622 283 176 10 74 349 205 468 3.94e-20 91.7
Msa0648220 MtrunA17_Chr3g0115801 27.508 309 175 12 77 360 119 403 3.01e-18 85.5
Msa0648220 MtrunA17_Chr4g0000261 24.161 298 184 7 73 349 65 341 1.95e-17 82.8
Msa0648220 MtrunA17_Chr1g0196921 22.932 266 193 5 74 335 14 271 2.33e-15 75.9
Msa0648220 MtrunA17_Chr1g0196921 29.167 168 111 4 75 241 112 272 5.48e-14 72.0
Msa0648220 MtrunA17_Chr6g0488341 26.360 239 155 6 123 357 7 228 2.58e-15 74.7
Msa0648220 MtrunA17_Chr5g0411411 26.621 293 195 10 73 354 8 291 5.54e-15 74.7
Msa0648220 MtrunA17_Chr7g0241521 24.254 268 194 6 70 335 13 273 6.48e-15 74.7
Msa0648220 MtrunA17_Chr6g0463041 26.697 221 126 5 172 357 18 237 1.40e-14 72.8
Msa0648220 MtrunA17_Chr3g0133111 24.830 294 188 8 74 342 6 291 2.37e-14 73.2
Msa0648220 MtrunA17_Chr4g0008061 24.060 266 189 8 74 335 15 271 2.21e-13 70.1
Msa0648220 MtrunA17_Chr8g0366791 24.232 293 181 8 73 344 8 280 3.77e-13 69.3
Msa0648220 MtrunA17_Chr4g0004571 25.692 253 174 5 119 364 51 296 4.09e-13 69.3
Msa0648220 MtrunA17_Chr8g0382201 25.000 308 184 12 77 360 198 482 4.68e-13 70.1
Msa0648220 MtrunA17_Chr2g0331771 24.476 286 199 6 73 354 155 427 5.22e-13 70.1
Msa0648220 MtrunA17_Chr4g0028531 25.000 304 191 10 76 365 27 307 1.69e-12 67.8
Msa0648220 MtrunA17_Chr7g0269701 22.074 299 210 8 61 349 9 294 2.59e-12 67.0
Msa0648220 MtrunA17_Chr5g0412401 22.074 299 199 7 74 342 6 300 7.55e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648220 AT4G28390.1 80.423 378 64 2 3 370 2 379 0.0 583
Msa0648220 AT4G28390.2 80.423 378 64 2 3 370 2 379 0.0 583
Msa0648220 AT5G13490.1 74.545 385 81 4 1 369 1 384 0.0 544
Msa0648220 AT5G13490.2 74.545 385 81 4 1 369 1 384 0.0 544
Msa0648220 AT3G08580.2 74.541 381 84 4 1 369 1 380 0.0 527
Msa0648220 AT3G08580.1 74.541 381 84 4 1 369 1 380 0.0 527
Msa0648220 AT5G17400.1 61.986 292 111 0 70 361 10 301 7.91e-133 382
Msa0648220 AT5G56450.1 38.614 303 167 7 70 360 30 325 5.29e-62 202
Msa0648220 AT4G26180.1 32.899 307 176 9 70 360 17 309 5.08e-33 126
Msa0648220 AT4G26180.2 33.218 289 164 8 70 343 17 291 1.06e-31 121
Msa0648220 AT2G37890.1 29.341 334 217 8 37 360 8 332 1.36e-31 122
Msa0648220 AT3G55640.1 28.475 295 194 7 73 358 37 323 6.83e-30 117
Msa0648220 AT3G55640.4 28.475 295 194 7 73 358 37 323 6.83e-30 117
Msa0648220 AT1G14560.1 29.537 281 172 6 85 349 38 308 1.76e-29 116
Msa0648220 AT3G51870.1 33.333 282 159 10 85 360 102 360 4.48e-29 116
Msa0648220 AT1G14560.2 29.818 275 167 6 85 343 38 302 8.77e-29 114
Msa0648220 AT5G01500.1 33.212 274 158 11 85 354 130 382 1.18e-27 113
Msa0648220 AT3G53940.1 29.545 308 196 9 64 360 63 360 1.70e-27 111
Msa0648220 AT4G32400.1 30.605 281 169 9 74 349 114 373 2.49e-27 111
Msa0648220 AT4G01100.1 27.812 320 175 11 77 360 45 344 3.52e-25 105
Msa0648220 AT4G01100.2 28.000 325 182 11 77 360 45 358 1.28e-23 100
Msa0648220 AT5G51050.1 29.643 280 174 7 74 349 223 483 1.41e-23 102
Msa0648220 AT4G01100.3 27.070 314 173 11 83 360 1 294 3.73e-23 98.6
Msa0648220 AT4G01100.3 25.854 205 129 6 77 266 98 294 5.52e-12 66.2
Msa0648220 AT5G61810.2 27.857 280 174 7 74 349 65 320 3.57e-22 96.3
Msa0648220 AT5G48970.1 27.358 318 189 8 71 354 19 328 8.41e-22 95.5
Msa0648220 AT3G21390.1 26.582 316 193 8 71 354 16 324 1.23e-21 94.7
Msa0648220 AT3G20240.1 24.746 295 186 6 73 349 51 327 1.78e-21 94.7
Msa0648220 AT3G21390.2 26.582 316 193 8 71 354 38 346 2.67e-21 94.4
Msa0648220 AT5G61810.1 27.857 280 174 7 74 349 208 463 4.02e-21 95.1
Msa0648220 AT3G55640.2 28.205 195 128 3 73 263 37 223 4.42e-21 91.7
Msa0648220 AT3G55640.3 28.205 195 128 3 73 263 37 223 4.42e-21 91.7
Msa0648220 AT5G07320.1 26.296 270 173 7 83 349 218 464 3.29e-19 89.4
Msa0648220 AT1G14560.3 30.851 188 113 4 178 349 24 210 5.06e-19 85.5
Msa0648220 AT3G53940.2 29.167 216 139 4 64 274 63 269 5.20e-19 86.7
Msa0648220 AT5G48970.2 26.562 256 153 6 126 354 10 257 9.55e-16 77.0
Msa0648220 AT5G64970.1 27.797 295 169 11 77 349 138 410 2.34e-15 77.4
Msa0648220 AT5G64970.2 27.119 295 171 11 77 349 14 286 9.55e-15 74.7
Msa0648220 AT3G54110.1 23.485 264 193 7 74 335 15 271 1.23e-14 74.3
Msa0648220 AT1G14140.1 24.820 278 192 7 64 335 8 274 1.49e-14 73.9
Msa0648220 AT5G64970.3 28.028 289 164 11 77 343 138 404 1.70e-14 74.7
Msa0648220 AT5G58970.1 24.460 278 195 6 70 342 12 279 2.85e-14 73.2
Msa0648220 AT1G78180.1 26.948 308 178 12 77 360 131 415 7.61e-13 69.7
Msa0648220 AT5G66380.1 27.805 205 124 6 172 364 5 197 2.05e-12 67.8
Msa0648220 AT4G27940.1 25.000 272 169 12 114 360 146 407 6.40e-11 63.9

Find 116 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCTATTTGTCTATTCTT+TGG 0.187425 4_3:+54682463 Msa0648220:CDS
GATAGGTGGACATTCTTATT+TGG 0.215860 4_3:+54681447 Msa0648220:CDS
TGAGCATTTCATCCTGGTTT+TGG 0.229183 4_3:-54681702 None:intergenic
GACATTCTTATTTGGTTTCC+AGG 0.255723 4_3:+54681455 Msa0648220:CDS
GTCTTGTTTGGAAAGAAATA+TGG 0.260053 4_3:+54683448 Msa0648220:CDS
GAAATGAAAATCAGTATAAA+TGG 0.294757 4_3:-54680348 None:intergenic
GGTGGTGAGAGGCAGTTTAA+TGG 0.306537 4_3:+54682533 Msa0648220:CDS
GCAGGTGCTGGTGTGCTTGC+TGG 0.309350 4_3:+54683406 Msa0648220:CDS
TATCACAATTGGTGCTGGTT+TGG 0.315135 4_3:+54683225 Msa0648220:CDS
AATCCAAAGAATAGACAAAT+AGG 0.321819 4_3:-54682466 None:intergenic
CAGTCACCAATTCCCTTATA+TGG 0.327603 4_3:-54681745 None:intergenic
TGCTAGTTTCCTGTTGGGAT+GGG 0.328388 4_3:+54683201 Msa0648220:CDS
AATTATACCCTCATCCTTCA+TGG 0.333517 4_3:-54681779 None:intergenic
CTGAACCGAGGCCTCTCTTC+TGG 0.339255 4_3:+54680409 Msa0648220:five_prime_UTR
TTAGCATCTGGTGGAGCTGC+TGG 0.340273 4_3:+54682431 Msa0648220:CDS
AACATATTGCGTGCTGTTGC+AGG 0.340667 4_3:+54683388 Msa0648220:CDS
TTCTTTGCTAGTTTCCTGTT+GGG 0.343196 4_3:+54683196 Msa0648220:CDS
ACGAACAAACAGAAGGATTC+CGG 0.349551 4_3:-54683507 None:intergenic
CCTATCTTCTGAGCAATTGA+TGG 0.352718 4_3:-54681430 None:intergenic
AGAAGAATGATGATGACTTC+TGG 0.353166 4_3:+54683274 Msa0648220:CDS
AAGCTGCAGCTGGTCTTGTT+TGG 0.353609 4_3:+54683436 Msa0648220:CDS
TTACAGTCTGATGGCATTGC+TGG 0.359420 4_3:+54682581 Msa0648220:CDS
AGCAATTTAATTCGTTCAAT+AGG 0.374655 4_3:-54681676 None:intergenic
GGCTACTGGAAGTGGTTTGC+TGG 0.374984 4_3:+54682404 Msa0648220:CDS
AAACCCTAGTCTCTTCATTT+CGG 0.377194 4_3:+54680320 Msa0648220:five_prime_UTR
TTTGGAAAGAAATATGGTTC+TGG 0.380189 4_3:+54683454 Msa0648220:CDS
CTTTGCGTCATTTGCCAAAC+GGG 0.396020 4_3:-54682498 None:intergenic
ACTAATGGAGTGCAGACTTC+TGG 0.400993 4_3:+54681526 Msa0648220:CDS
TTGCTAGTTTCCTGTTGGGA+TGG 0.404433 4_3:+54683200 Msa0648220:CDS
AGATGTTGAATCCACGATAA+AGG 0.405874 4_3:-54682604 None:intergenic
CCATCAATTGCTCAGAAGAT+AGG 0.406150 4_3:+54681430 Msa0648220:CDS
GGATTATGCCCGTACCCGTT+TGG 0.408041 4_3:+54682484 Msa0648220:CDS
CTGAAACCAGTTGTCTTGGT+TGG 0.408866 4_3:+54682680 Msa0648220:CDS
TCTGAGCCATATAAGGGAAT+TGG 0.421286 4_3:+54681739 Msa0648220:CDS
TCTTCTACGCACAGTGTCAA+TGG 0.421926 4_3:-54683257 None:intergenic
GTTAGAGTTGGCGCTAAGCC+TGG 0.422723 4_3:-54681473 None:intergenic
CAGGTTATCTGAGCCATATA+AGG 0.423186 4_3:+54681732 Msa0648220:CDS
TAGCATCTGGTGGAGCTGCT+GGG 0.424080 4_3:+54682432 Msa0648220:CDS
GTGTATCGTGGTCTTTACTT+TGG 0.436559 4_3:+54682644 Msa0648220:CDS
TGGGGTATCACAATTGGTGC+TGG 0.437821 4_3:+54683220 Msa0648220:CDS
CCAAACCATCGTTGCAAAAG+AGG 0.440517 4_3:+54683333 Msa0648220:CDS
TGGAGTGCAGACTTCTGGTT+TGG 0.442748 4_3:+54681531 Msa0648220:CDS
TGACGCAAAGGCTGCAAAGA+AGG 0.445560 4_3:+54682511 Msa0648220:CDS
TTGGGATGGGGTATCACAAT+TGG 0.445710 4_3:+54683214 Msa0648220:CDS
CGAACAAACAGAAGGATTCC+GGG 0.447022 4_3:-54683506 None:intergenic
TTTCTTTGCTAGTTTCCTGT+TGG 0.448910 4_3:+54683195 Msa0648220:CDS
CGTCATTTGCCAAACGGGTA+CGG 0.451569 4_3:-54682493 None:intergenic
TTCTCTGAAACCAGTTGTCT+TGG 0.454364 4_3:+54682676 Msa0648220:CDS
ACGTCCGGTACTTTCACTAA+TGG 0.459227 4_3:+54681511 Msa0648220:CDS
CCAGCGGGTCCTTTCTCTGC+TGG 0.461085 4_3:-54681592 None:intergenic
CACTTTGTAGGCTGCAATCA+TGG 0.461883 4_3:+54681390 Msa0648220:exon
TTGCGTGCTGTTGCAGGTGC+TGG 0.462273 4_3:+54683394 Msa0648220:CDS
AAGAAATATGGTTCTGGCGG+CGG 0.463431 4_3:+54683460 Msa0648220:CDS
GGTCCTTTCTCTGCTGGAGA+AGG 0.466249 4_3:-54681586 None:intergenic
AAACCAGTTGTCTTGGTTGG+TGG 0.469067 4_3:+54682683 Msa0648220:CDS
TTGTGATACCCCATCCCAAC+AGG 0.471309 4_3:-54683210 None:intergenic
CACAGTGTCAATGGGATAAG+AGG 0.473276 4_3:-54683248 None:intergenic
ATTCAGATTATCACCTGAGT+AGG 0.479406 4_3:-54681844 None:intergenic
GCTAGTTTCCTGTTGGGATG+GGG 0.479609 4_3:+54683202 Msa0648220:CDS
TGTCTTGGTTGGTGGGATGC+AGG 0.479765 4_3:+54682691 Msa0648220:CDS
ATCCCACCAACCAAGACAAC+TGG 0.485200 4_3:-54682686 None:intergenic
AGGTTATCTGAGCCATATAA+GGG 0.488890 4_3:+54681733 Msa0648220:CDS
CCTTTGCGTCATTTGCCAAA+CGG 0.490345 4_3:-54682499 None:intergenic
GTCATTTGCCAAACGGGTAC+GGG 0.492794 4_3:-54682492 None:intergenic
ACAGAGATGGCTACTGGAAG+TGG 0.495428 4_3:+54682396 Msa0648220:CDS
GCTGGGAATTTAGCATCTGG+TGG 0.501424 4_3:+54682422 Msa0648220:CDS
AGCAATGCCATCAGACTGTA+AGG 0.504971 4_3:-54682579 None:intergenic
TACAGGAATTACTCTACGTC+CGG 0.508953 4_3:+54681496 Msa0648220:CDS
GTCCCTTCTCCAGCAGAGAA+AGG 0.510593 4_3:+54681583 Msa0648220:CDS
CTTCTACGCACAGTGTCAAT+GGG 0.512712 4_3:-54683256 None:intergenic
TTTGCTGGGAATTTAGCATC+TGG 0.520737 4_3:+54682419 Msa0648220:CDS
GTAATTCCTGTAGTTAGAGT+TGG 0.521037 4_3:-54681485 None:intergenic
AACCAGTTGTCTTGGTTGGT+GGG 0.523148 4_3:+54682684 Msa0648220:CDS
TGCTCGAACCATGAAGGATG+AGG 0.524575 4_3:+54681771 Msa0648220:CDS
TGGTTATGACAAGCTGCAGC+TGG 0.524956 4_3:+54683426 Msa0648220:CDS
AGCATCTGGTGGAGCTGCTG+GGG 0.525003 4_3:+54682433 Msa0648220:CDS
GGCATTGCTGGCCTTTATCG+TGG 0.542365 4_3:+54682593 Msa0648220:CDS
ATATACCAGAAGAGAGGCCT+CGG 0.547222 4_3:-54680414 None:intergenic
GTCCTTTCTCTGCTGGAGAA+GGG 0.549707 4_3:-54681585 None:intergenic
GCTACTGGAAGTGGTTTGCT+GGG 0.556481 4_3:+54682405 Msa0648220:CDS
GGATTCAACATCTCGTGTGT+TGG 0.556905 4_3:+54682614 Msa0648220:CDS
ATGAAATGCTCAAAAGTGGC+AGG 0.556927 4_3:+54681713 Msa0648220:CDS
GCACCGAAATGAAGAGACTA+GGG 0.568820 4_3:-54680323 None:intergenic
TTAGCGCCAACTCTAACTAC+AGG 0.570302 4_3:+54681479 Msa0648220:CDS
TTCAGATTATCACCTGAGTA+GGG 0.571644 4_3:-54681843 None:intergenic
GACGCAAAGGCTGCAAAGAA+GGG 0.572621 4_3:+54682512 Msa0648220:CDS
CCAGCAGAGAAAGGACCCGC+TGG 0.578869 4_3:+54681592 Msa0648220:CDS
TGAGAGGCAGTTTAATGGAA+TGG 0.581022 4_3:+54682538 Msa0648220:CDS
CAAACCATCGTTGCAAAAGA+GGG 0.586013 4_3:+54683334 Msa0648220:CDS
CAGGATGAAATGCTCAAAAG+TGG 0.586952 4_3:+54681709 Msa0648220:CDS
AGCACCGAAATGAAGAGACT+AGG 0.589050 4_3:-54680324 None:intergenic
AAGAAAACCTTACAGTCTGA+TGG 0.592392 4_3:+54682572 Msa0648220:CDS
TAGGCTGCAATCATGGCCGA+TGG 0.596371 4_3:+54681397 Msa0648220:exon
CACTCCATTAGTGAAAGTAC+CGG 0.601548 4_3:-54681515 None:intergenic
TAAATTGCTTATCCAAAACC+AGG 0.601587 4_3:+54681690 Msa0648220:CDS
GCCTCGGTTCAGATCGCGAG+AGG 0.603756 4_3:-54680398 None:intergenic
GGTATAATTGCTCTGTGGAG+AGG 0.606231 4_3:+54681793 Msa0648220:CDS
GCTCGAACCATGAAGGATGA+GGG 0.608674 4_3:+54681772 Msa0648220:CDS
TGATGGATGATGTGGTCCAT+CGG 0.611029 4_3:-54681413 None:intergenic
CCCTCTCGCGATCTGAACCG+AGG 0.611496 4_3:+54680397 Msa0648220:five_prime_UTR
GGAAAGAAATATGGTTCTGG+CGG 0.618520 4_3:+54683457 Msa0648220:CDS
TCAATTGCTCAGAAGATAGG+TGG 0.621358 4_3:+54681433 Msa0648220:CDS
CTGCAAAGAAGGGTGGTGAG+AGG 0.621915 4_3:+54682522 Msa0648220:CDS
AGAATAGACAAATAGGAGTG+AGG 0.622653 4_3:-54682459 None:intergenic
CCGTTTGGCAAATGACGCAA+AGG 0.622778 4_3:+54682499 Msa0648220:CDS
TATCAGATACTTCCCTACTC+AGG 0.622842 4_3:+54681831 Msa0648220:CDS
CATTTAAACGAACAAACAGA+AGG 0.632681 4_3:-54683514 None:intergenic
TGATGACGATAATAATTACC+CGG 0.640899 4_3:+54683488 Msa0648220:three_prime_UTR
GAGATGATATACCAGAAGAG+AGG 0.642723 4_3:-54680420 None:intergenic
TGAGCAATTGATGGATGATG+TGG 0.652110 4_3:-54681421 None:intergenic
ATAGACAAATAGGAGTGAGG+AGG 0.664089 4_3:-54682456 None:intergenic
GTTGGAATTATAGTGTATCG+TGG 0.683295 4_3:+54682632 Msa0648220:CDS
GCAAAGGCTGCAAAGAAGGG+TGG 0.689413 4_3:+54682515 Msa0648220:CDS
CCTCGGTTCAGATCGCGAGA+GGG 0.701243 4_3:-54680397 None:intergenic
ATGAGGGTATAATTGCTCTG+TGG 0.733403 4_3:+54681788 Msa0648220:CDS
GGGACAGTAAATGACGACAG+AGG 0.743353 4_3:-54681565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATAAATTAATTTTGCT+AGG + chr4_3:54680712-54680731 Msa0648220:intron 15.0%
!!! CATATAAATTAATTTTGCTA+GGG + chr4_3:54680713-54680732 Msa0648220:intron 15.0%
!! AGAATGAAATTAGAAATTAA+AGG - chr4_3:54682310-54682329 None:intergenic 15.0%
!!! TGTACAAAATTTGATTTTAA+CGG + chr4_3:54682716-54682735 Msa0648220:intron 15.0%
!! TTGAAACTTTAATTGAATTA+GGG + chr4_3:54683069-54683088 Msa0648220:intron 15.0%
!! TGAACATTACTAAAATAATT+GGG - chr4_3:54683131-54683150 None:intergenic 15.0%
!! ATGAACATTACTAAAATAAT+TGG - chr4_3:54683132-54683151 None:intergenic 15.0%
!!! TTTATTTAAACGATCATTTT+AGG + chr4_3:54683765-54683784 Msa0648220:three_prime_UTR 15.0%
!! GAAATGAAAATCAGTATAAA+TGG - chr4_3:54680351-54680370 None:intergenic 20.0%
!! AGCATAAAAACGAAAATTAA+TGG - chr4_3:54680495-54680514 None:intergenic 20.0%
!! AATAATTCAATTCAACATGT+TGG - chr4_3:54680851-54680870 None:intergenic 20.0%
!!! AACATCAATTTTTTGTTGTT+GGG + chr4_3:54681169-54681188 Msa0648220:intron 20.0%
!! CAAATGTATTTGTTTCAATT+TGG + chr4_3:54681258-54681277 Msa0648220:intron 20.0%
!!! ATTTTTCTGCTTTTAACTTT+TGG + chr4_3:54681329-54681348 Msa0648220:intron 20.0%
!!! ATTGAGATTAGCTTATATTT+TGG + chr4_3:54682123-54682142 Msa0648220:intron 20.0%
!!! AATTTCATTCTTTTCCTTTT+AGG + chr4_3:54682319-54682338 Msa0648220:intron 20.0%
!!! AATTTTAAAAAAGACAGAGA+TGG + chr4_3:54682383-54682402 Msa0648220:CDS 20.0%
!!! GTACAAAATTTGATTTTAAC+GGG + chr4_3:54682717-54682736 Msa0648220:intron 20.0%
!!! GGAATAATTTTAATCTAACA+CGG - chr4_3:54682767-54682786 None:intergenic 20.0%
!!! TAAAATTATTCCTCTTTTGT+TGG + chr4_3:54682775-54682794 Msa0648220:intron 20.0%
!!! TTTTAATAGAAAGATGTCTA+GGG - chr4_3:54683014-54683033 None:intergenic 20.0%
!! CTTGAAACTTTAATTGAATT+AGG + chr4_3:54683068-54683087 Msa0648220:intron 20.0%
!! GAACATTACTAAAATAATTG+GGG - chr4_3:54683130-54683149 None:intergenic 20.0%
!!! CATCATTTTCTTATTATCTA+TGG + chr4_3:54683149-54683168 Msa0648220:intron 20.0%
!! TATTTCACAGTGATTTTTAC+TGG + chr4_3:54680533-54680552 Msa0648220:intron 25.0%
!!! TTTTTAAGCTGATTATGAAG+CGG + chr4_3:54680613-54680632 Msa0648220:intron 25.0%
! AAAAAGTAATCGACAAAAAC+AGG - chr4_3:54681048-54681067 None:intergenic 25.0%
!!! GAACATCAATTTTTTGTTGT+TGG + chr4_3:54681168-54681187 Msa0648220:intron 25.0%
!!! ACATCAATTTTTTGTTGTTG+GGG + chr4_3:54681170-54681189 Msa0648220:intron 25.0%
!!! TTTTGGAATTTTTGAATCGT+TGG + chr4_3:54681346-54681365 Msa0648220:intron 25.0%
!!! ATTTTTGATCGATTTTCTGA+TGG + chr4_3:54681615-54681634 Msa0648220:CDS 25.0%
!!! TTTTTGATCGATTTTCTGAT+GGG + chr4_3:54681616-54681635 Msa0648220:CDS 25.0%
! AGCAATTTAATTCGTTCAAT+AGG - chr4_3:54681679-54681698 None:intergenic 25.0%
! ATAAGTTATATGCGTTGTAA+GGG + chr4_3:54681915-54681934 Msa0648220:intron 25.0%
! TTAGATTTCCACAAATTTCT+TGG - chr4_3:54681970-54681989 None:intergenic 25.0%
! AGAAATTTGTGGAAATCTAA+TGG + chr4_3:54681970-54681989 Msa0648220:intron 25.0%
!!! AGATTAGCTTATATTTTGGA+AGG + chr4_3:54682127-54682146 Msa0648220:intron 25.0%
!!! GATTAGCTTATATTTTGGAA+GGG + chr4_3:54682128-54682147 Msa0648220:intron 25.0%
! AATAGCAAGGATACAAAAAT+AGG - chr4_3:54682172-54682191 None:intergenic 25.0%
!! GAAAATGTTTTGTATGTCTA+GGG - chr4_3:54682206-54682225 None:intergenic 25.0%
!! AGAAAATGTTTTGTATGTCT+AGG - chr4_3:54682207-54682226 None:intergenic 25.0%
! AATCCAAAGAATAGACAAAT+AGG - chr4_3:54682469-54682488 None:intergenic 25.0%
!!! TTTGATTTTAACGGGAAATA+TGG + chr4_3:54682725-54682744 Msa0648220:intron 25.0%
!!! ACTTTGATTTTATGTTTGTC+AGG + chr4_3:54682802-54682821 Msa0648220:intron 25.0%
!!! GTAAAAGGTGTTTAATAGAA+AGG - chr4_3:54682992-54683011 None:intergenic 25.0%
!!! GTTTTAATAGAAAGATGTCT+AGG - chr4_3:54683015-54683034 None:intergenic 25.0%
AATCGTTGAGAAAATGGAAA+TGG - chr4_3:54680470-54680489 None:intergenic 30.0%
ATGGAAAATCGTTGAGAAAA+TGG - chr4_3:54680476-54680495 None:intergenic 30.0%
TACAATAAAAACGATTGCAG+AGG - chr4_3:54680570-54680589 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + chr4_3:54680869-54680888 Msa0648220:intron 30.0%
!! ATTTTCTTCTATGAAGCACT+AGG - chr4_3:54681012-54681031 None:intergenic 30.0%
AATCGACAAAAACAGGAATA+AGG - chr4_3:54681041-54681060 None:intergenic 30.0%
! TTTGTGTACATGATTTTCTG+TGG + chr4_3:54681116-54681135 Msa0648220:intron 30.0%
! TTTGAATCGTTGGTATGTTT+TGG + chr4_3:54681356-54681375 Msa0648220:intron 30.0%
AAAATCGATCAAAAATCCAG+CGG - chr4_3:54681611-54681630 None:intergenic 30.0%
TAAATTGCTTATCCAAAACC+AGG + chr4_3:54681690-54681709 Msa0648220:CDS 30.0%
CTTACAACGCATATAACTTA+TGG - chr4_3:54681916-54681935 None:intergenic 30.0%
CATAAGTTATATGCGTTGTA+AGG + chr4_3:54681914-54681933 Msa0648220:intron 30.0%
TTAACACAATATACACTTCG+AGG - chr4_3:54681946-54681965 None:intergenic 30.0%
GTGTTAAACCAAGAAATTTG+TGG + chr4_3:54681959-54681978 Msa0648220:intron 30.0%
GGATGTAAATGTTAATAGCA+AGG - chr4_3:54682185-54682204 None:intergenic 30.0%
!! CTTTTAAGGATTACTTCAAG+AGG + chr4_3:54682354-54682373 Msa0648220:CDS 30.0%
ACTCCTATTTGTCTATTCTT+TGG + chr4_3:54682463-54682482 Msa0648220:CDS 30.0%
CAAAGTAAAACCAACAAAAG+AGG - chr4_3:54682788-54682807 None:intergenic 30.0%
! ATATACACATTACTGATTGC+AGG - chr4_3:54682964-54682983 None:intergenic 30.0%
! CTATGATGTCTAGGATATAA+AGG - chr4_3:54683039-54683058 None:intergenic 30.0%
TTTAGCAATCTATGATGTCT+AGG - chr4_3:54683048-54683067 None:intergenic 30.0%
CTAAAAGAGAGTCAAAATTG+TGG - chr4_3:54683107-54683126 None:intergenic 30.0%
! ATGGTACTTTTCTTGTTAAC+AGG + chr4_3:54683168-54683187 Msa0648220:intron 30.0%
!! GTCTTGTTTGGAAAGAAATA+TGG + chr4_3:54683448-54683467 Msa0648220:CDS 30.0%
TTTGGAAAGAAATATGGTTC+TGG + chr4_3:54683454-54683473 Msa0648220:CDS 30.0%
! TGATGACGATAATAATTACC+CGG + chr4_3:54683488-54683507 Msa0648220:three_prime_UTR 30.0%
CATTTAAACGAACAAACAGA+AGG - chr4_3:54683517-54683536 None:intergenic 30.0%
AAACCCTAGTCTCTTCATTT+CGG + chr4_3:54680320-54680339 Msa0648220:five_prime_UTR 35.0%
TTTGCTAGGGTTTAACGTTT+AGG + chr4_3:54680726-54680745 Msa0648220:intron 35.0%
TGAATGTAATCACATGTGTC+GGG + chr4_3:54680870-54680889 Msa0648220:intron 35.0%
!! TATTAGAAGTGTCAGTGCTA+AGG + chr4_3:54680895-54680914 Msa0648220:intron 35.0%
!! ATTAGAAGTGTCAGTGCTAA+GGG + chr4_3:54680896-54680915 Msa0648220:intron 35.0%
TATGTAATCCAGAGTTCAGT+CGG - chr4_3:54680943-54680962 None:intergenic 35.0%
!!! TGGTATGTTTTGGTTTTTGC+AGG + chr4_3:54681366-54681385 Msa0648220:intron 35.0%
GATAGGTGGACATTCTTATT+TGG + chr4_3:54681447-54681466 Msa0648220:CDS 35.0%
! GACATTCTTATTTGGTTTCC+AGG + chr4_3:54681455-54681474 Msa0648220:CDS 35.0%
GTAATTCCTGTAGTTAGAGT+TGG - chr4_3:54681488-54681507 None:intergenic 35.0%
AAATCGATCAAAAATCCAGC+GGG - chr4_3:54681610-54681629 None:intergenic 35.0%
AGGTTATCTGAGCCATATAA+GGG + chr4_3:54681733-54681752 Msa0648220:CDS 35.0%
AATTATACCCTCATCCTTCA+TGG - chr4_3:54681782-54681801 None:intergenic 35.0%
TTCAGATTATCACCTGAGTA+GGG - chr4_3:54681846-54681865 None:intergenic 35.0%
ATTCAGATTATCACCTGAGT+AGG - chr4_3:54681847-54681866 None:intergenic 35.0%
TGTGGTGTTTGTATAAGTAG+AGG - chr4_3:54682015-54682034 None:intergenic 35.0%
! ACAGTGACAGTTTTTGTATG+TGG - chr4_3:54682033-54682052 None:intergenic 35.0%
AAAAACTGTCACTGTGATTC+CGG + chr4_3:54682038-54682057 Msa0648220:intron 35.0%
! TTTCCATGTGTTGTCTTGTT+TGG + chr4_3:54682072-54682091 Msa0648220:intron 35.0%
!! TTCCATGTGTTGTCTTGTTT+GGG + chr4_3:54682073-54682092 Msa0648220:intron 35.0%
!! CTCTTTTGGTGATTGAATGT+TGG + chr4_3:54682261-54682280 Msa0648220:intron 35.0%
AGAATAGACAAATAGGAGTG+AGG - chr4_3:54682462-54682481 None:intergenic 35.0%
AAGAAAACCTTACAGTCTGA+TGG + chr4_3:54682572-54682591 Msa0648220:CDS 35.0%
AGATGTTGAATCCACGATAA+AGG - chr4_3:54682607-54682626 None:intergenic 35.0%
GTTGGAATTATAGTGTATCG+TGG + chr4_3:54682632-54682651 Msa0648220:CDS 35.0%
! AGAAAGATGTCTAGGGTAAA+AGG - chr4_3:54683007-54683026 None:intergenic 35.0%
! TTTCTTTGCTAGTTTCCTGT+TGG + chr4_3:54683195-54683214 Msa0648220:CDS 35.0%
! TTCTTTGCTAGTTTCCTGTT+GGG + chr4_3:54683196-54683215 Msa0648220:CDS 35.0%
! AGAAGAATGATGATGACTTC+TGG + chr4_3:54683274-54683293 Msa0648220:CDS 35.0%
! GGTACTAAGTCTCTTTTCAA+AGG + chr4_3:54683355-54683374 Msa0648220:CDS 35.0%
GAGATGATATACCAGAAGAG+AGG - chr4_3:54680423-54680442 None:intergenic 40.0%
ATGTAATCCAGAGTTCAGTC+GGG - chr4_3:54680942-54680961 None:intergenic 40.0%
! GTGTACATGATTTTCTGTGG+TGG + chr4_3:54681119-54681138 Msa0648220:intron 40.0%
!! GTTTTTGCAGGTCACTTTGT+AGG + chr4_3:54681378-54681397 Msa0648220:intron 40.0%
! TGAGCAATTGATGGATGATG+TGG - chr4_3:54681424-54681443 None:intergenic 40.0%
CCTATCTTCTGAGCAATTGA+TGG - chr4_3:54681433-54681452 None:intergenic 40.0%
CCATCAATTGCTCAGAAGAT+AGG + chr4_3:54681430-54681449 Msa0648220:CDS 40.0%
TCAATTGCTCAGAAGATAGG+TGG + chr4_3:54681433-54681452 Msa0648220:CDS 40.0%
TACAGGAATTACTCTACGTC+CGG + chr4_3:54681496-54681515 Msa0648220:CDS 40.0%
! CACTCCATTAGTGAAAGTAC+CGG - chr4_3:54681518-54681537 None:intergenic 40.0%
!! TTGATCGATTTTCTGATGGG+AGG + chr4_3:54681619-54681638 Msa0648220:CDS 40.0%
! TGAGCATTTCATCCTGGTTT+TGG - chr4_3:54681705-54681724 None:intergenic 40.0%
! CACTTTTGAGCATTTCATCC+TGG - chr4_3:54681711-54681730 None:intergenic 40.0%
CAGGATGAAATGCTCAAAAG+TGG + chr4_3:54681709-54681728 Msa0648220:CDS 40.0%
ATGAAATGCTCAAAAGTGGC+AGG + chr4_3:54681713-54681732 Msa0648220:CDS 40.0%
CAGGTTATCTGAGCCATATA+AGG + chr4_3:54681732-54681751 Msa0648220:CDS 40.0%
TCTGAGCCATATAAGGGAAT+TGG + chr4_3:54681739-54681758 Msa0648220:CDS 40.0%
CAGTCACCAATTCCCTTATA+TGG - chr4_3:54681748-54681767 None:intergenic 40.0%
! ATGAGGGTATAATTGCTCTG+TGG + chr4_3:54681788-54681807 Msa0648220:CDS 40.0%
TATCAGATACTTCCCTACTC+AGG + chr4_3:54681831-54681850 Msa0648220:CDS 40.0%
CATGGAAAATCTCATGACAC+CGG - chr4_3:54682060-54682079 None:intergenic 40.0%
AACCCAAACAAGACAACACA+TGG - chr4_3:54682078-54682097 None:intergenic 40.0%
! GATGCATGTGAATGCTCTTT+TGG + chr4_3:54682247-54682266 Msa0648220:intron 40.0%
AGCAAAGTTCAGAGCCTAAA+AGG - chr4_3:54682336-54682355 None:intergenic 40.0%
!!! GGCTCTGAACTTTGCTTTTA+AGG + chr4_3:54682340-54682359 Msa0648220:intron 40.0%
AAAAAGACAGAGATGGCTAC+TGG + chr4_3:54682390-54682409 Msa0648220:CDS 40.0%
TTTGCTGGGAATTTAGCATC+TGG + chr4_3:54682419-54682438 Msa0648220:CDS 40.0%
ATAGACAAATAGGAGTGAGG+AGG - chr4_3:54682459-54682478 None:intergenic 40.0%
TGAGAGGCAGTTTAATGGAA+TGG + chr4_3:54682538-54682557 Msa0648220:CDS 40.0%
GTGTATCGTGGTCTTTACTT+TGG + chr4_3:54682644-54682663 Msa0648220:CDS 40.0%
!! TTCTCTGAAACCAGTTGTCT+TGG + chr4_3:54682676-54682695 Msa0648220:CDS 40.0%
!! TATCACAATTGGTGCTGGTT+TGG + chr4_3:54683225-54683244 Msa0648220:CDS 40.0%
CAAACCATCGTTGCAAAAGA+GGG + chr4_3:54683334-54683353 Msa0648220:CDS 40.0%
!! AAGTCTCTTTTCAAAGGTGC+TGG + chr4_3:54683361-54683380 Msa0648220:CDS 40.0%
!! GGAAAGAAATATGGTTCTGG+CGG + chr4_3:54683457-54683476 Msa0648220:CDS 40.0%
ACGAACAAACAGAAGGATTC+CGG - chr4_3:54683510-54683529 None:intergenic 40.0%
GCACCGAAATGAAGAGACTA+GGG - chr4_3:54680326-54680345 None:intergenic 45.0%
! AGCACCGAAATGAAGAGACT+AGG - chr4_3:54680327-54680346 None:intergenic 45.0%
ATATACCAGAAGAGAGGCCT+CGG - chr4_3:54680417-54680436 None:intergenic 45.0%
ACTCCGGTTCTTAGTGGAAA+GGG - chr4_3:54680968-54680987 None:intergenic 45.0%
CACAAAGCAAAGTCCATCAC+AGG - chr4_3:54681147-54681166 None:intergenic 45.0%
CACTTTGTAGGCTGCAATCA+TGG + chr4_3:54681390-54681409 Msa0648220:exon 45.0%
! TGATGGATGATGTGGTCCAT+CGG - chr4_3:54681416-54681435 None:intergenic 45.0%
TTAGCGCCAACTCTAACTAC+AGG + chr4_3:54681479-54681498 Msa0648220:CDS 45.0%
ACGTCCGGTACTTTCACTAA+TGG + chr4_3:54681511-54681530 Msa0648220:CDS 45.0%
ACTAATGGAGTGCAGACTTC+TGG + chr4_3:54681526-54681545 Msa0648220:CDS 45.0%
! CTGTTTTGCTCGAACCATGA+AGG + chr4_3:54681765-54681784 Msa0648220:CDS 45.0%
GGTATAATTGCTCTGTGGAG+AGG + chr4_3:54681793-54681812 Msa0648220:CDS 45.0%
CTTTGCGTCATTTGCCAAAC+GGG - chr4_3:54682501-54682520 None:intergenic 45.0%
CCTTTGCGTCATTTGCCAAA+CGG - chr4_3:54682502-54682521 None:intergenic 45.0%
AGCAATGCCATCAGACTGTA+AGG - chr4_3:54682582-54682601 None:intergenic 45.0%
TTACAGTCTGATGGCATTGC+TGG + chr4_3:54682581-54682600 Msa0648220:CDS 45.0%
GGATTCAACATCTCGTGTGT+TGG + chr4_3:54682614-54682633 Msa0648220:CDS 45.0%
CTGAAACCAGTTGTCTTGGT+TGG + chr4_3:54682680-54682699 Msa0648220:CDS 45.0%
AAACCAGTTGTCTTGGTTGG+TGG + chr4_3:54682683-54682702 Msa0648220:CDS 45.0%
AACCAGTTGTCTTGGTTGGT+GGG + chr4_3:54682684-54682703 Msa0648220:CDS 45.0%
! TTGCTAGTTTCCTGTTGGGA+TGG + chr4_3:54683200-54683219 Msa0648220:CDS 45.0%
! TGCTAGTTTCCTGTTGGGAT+GGG + chr4_3:54683201-54683220 Msa0648220:CDS 45.0%
! TTGGGATGGGGTATCACAAT+TGG + chr4_3:54683214-54683233 Msa0648220:CDS 45.0%
CACAGTGTCAATGGGATAAG+AGG - chr4_3:54683251-54683270 None:intergenic 45.0%
CTTCTACGCACAGTGTCAAT+GGG - chr4_3:54683259-54683278 None:intergenic 45.0%
TCTTCTACGCACAGTGTCAA+TGG - chr4_3:54683260-54683279 None:intergenic 45.0%
! CCTCTTTTGCAACGATGGTT+TGG - chr4_3:54683336-54683355 None:intergenic 45.0%
CCAAACCATCGTTGCAAAAG+AGG + chr4_3:54683333-54683352 Msa0648220:CDS 45.0%
! AGTACCCTCTTTTGCAACGA+TGG - chr4_3:54683341-54683360 None:intergenic 45.0%
! AACATATTGCGTGCTGTTGC+AGG + chr4_3:54683388-54683407 Msa0648220:CDS 45.0%
!! AAGAAATATGGTTCTGGCGG+CGG + chr4_3:54683460-54683479 Msa0648220:CDS 45.0%
CGAACAAACAGAAGGATTCC+GGG - chr4_3:54683509-54683528 None:intergenic 45.0%
! GGTGTTGTGTCTGAGTGTCT+CGG - chr4_3:54680830-54680849 None:intergenic 50.0%
CGGGAGGTAAGTAAACCACT+AGG - chr4_3:54680923-54680942 None:intergenic 50.0%
TAATCCAGAGTTCAGTCGGG+AGG - chr4_3:54680939-54680958 None:intergenic 50.0%
AGCCCCTTTCCACTAAGAAC+CGG + chr4_3:54680962-54680981 Msa0648220:intron 50.0%
CTCCGGTTCTTAGTGGAAAG+GGG - chr4_3:54680967-54680986 None:intergenic 50.0%
CACTCCGGTTCTTAGTGGAA+AGG - chr4_3:54680969-54680988 None:intergenic 50.0%
CTTTCCACTAAGAACCGGAG+TGG + chr4_3:54680967-54680986 Msa0648220:intron 50.0%
GTTACCACTCCGGTTCTTAG+TGG - chr4_3:54680974-54680993 None:intergenic 50.0%
CACTAGGACACTGTGTGTGT+GGG - chr4_3:54680996-54681015 None:intergenic 50.0%
TTCTGTGGTGGTTCCTGTGA+TGG + chr4_3:54681131-54681150 Msa0648220:intron 50.0%
! TGGAGTGCAGACTTCTGGTT+TGG + chr4_3:54681531-54681550 Msa0648220:CDS 50.0%
GGGACAGTAAATGACGACAG+AGG - chr4_3:54681568-54681587 None:intergenic 50.0%
GTCCTTTCTCTGCTGGAGAA+GGG - chr4_3:54681588-54681607 None:intergenic 50.0%
TGCTCGAACCATGAAGGATG+AGG + chr4_3:54681771-54681790 Msa0648220:CDS 50.0%
GCTCGAACCATGAAGGATGA+GGG + chr4_3:54681772-54681791 Msa0648220:CDS 50.0%
ACAGAGATGGCTACTGGAAG+TGG + chr4_3:54682396-54682415 Msa0648220:CDS 50.0%
!! GCTACTGGAAGTGGTTTGCT+GGG + chr4_3:54682405-54682424 Msa0648220:CDS 50.0%
GCTGGGAATTTAGCATCTGG+TGG + chr4_3:54682422-54682441 Msa0648220:CDS 50.0%
GTCATTTGCCAAACGGGTAC+GGG - chr4_3:54682495-54682514 None:intergenic 50.0%
CGTCATTTGCCAAACGGGTA+CGG - chr4_3:54682496-54682515 None:intergenic 50.0%
CCGTTTGGCAAATGACGCAA+AGG + chr4_3:54682499-54682518 Msa0648220:CDS 50.0%
TGACGCAAAGGCTGCAAAGA+AGG + chr4_3:54682511-54682530 Msa0648220:CDS 50.0%
GACGCAAAGGCTGCAAAGAA+GGG + chr4_3:54682512-54682531 Msa0648220:CDS 50.0%
GGTGGTGAGAGGCAGTTTAA+TGG + chr4_3:54682533-54682552 Msa0648220:CDS 50.0%
ATCCCACCAACCAAGACAAC+TGG - chr4_3:54682689-54682708 None:intergenic 50.0%
! GCTAGTTTCCTGTTGGGATG+GGG + chr4_3:54683202-54683221 Msa0648220:CDS 50.0%
TTGTGATACCCCATCCCAAC+AGG - chr4_3:54683213-54683232 None:intergenic 50.0%
! TGGGGTATCACAATTGGTGC+TGG + chr4_3:54683220-54683239 Msa0648220:CDS 50.0%
TGGTTATGACAAGCTGCAGC+TGG + chr4_3:54683426-54683445 Msa0648220:CDS 50.0%
!! AAGCTGCAGCTGGTCTTGTT+TGG + chr4_3:54683436-54683455 Msa0648220:CDS 50.0%
GTCAGTGCTAAGGGTCCTAG+TGG + chr4_3:54680905-54680924 Msa0648220:intron 55.0%
CTTACCTCCCGACTGAACTC+TGG + chr4_3:54680932-54680951 Msa0648220:intron 55.0%
! GTGTGTGTGGGTTACCACTC+CGG - chr4_3:54680984-54681003 None:intergenic 55.0%
GCACTAGGACACTGTGTGTG+TGG - chr4_3:54680997-54681016 None:intergenic 55.0%
TAGGCTGCAATCATGGCCGA+TGG + chr4_3:54681397-54681416 Msa0648220:exon 55.0%
GTTAGAGTTGGCGCTAAGCC+TGG - chr4_3:54681476-54681495 None:intergenic 55.0%
GTCCCTTCTCCAGCAGAGAA+AGG + chr4_3:54681583-54681602 Msa0648220:CDS 55.0%
GGTCCTTTCTCTGCTGGAGA+AGG - chr4_3:54681589-54681608 None:intergenic 55.0%
! GGCTACTGGAAGTGGTTTGC+TGG + chr4_3:54682404-54682423 Msa0648220:CDS 55.0%
TTAGCATCTGGTGGAGCTGC+TGG + chr4_3:54682431-54682450 Msa0648220:CDS 55.0%
TAGCATCTGGTGGAGCTGCT+GGG + chr4_3:54682432-54682451 Msa0648220:CDS 55.0%
GGATTATGCCCGTACCCGTT+TGG + chr4_3:54682484-54682503 Msa0648220:CDS 55.0%
GCAAAGGCTGCAAAGAAGGG+TGG + chr4_3:54682515-54682534 Msa0648220:CDS 55.0%
CTGCAAAGAAGGGTGGTGAG+AGG + chr4_3:54682522-54682541 Msa0648220:CDS 55.0%
!! GGCATTGCTGGCCTTTATCG+TGG + chr4_3:54682593-54682612 Msa0648220:CDS 55.0%
!! TGTCTTGGTTGGTGGGATGC+AGG + chr4_3:54682691-54682710 Msa0648220:CDS 55.0%
CCTCGGTTCAGATCGCGAGA+GGG - chr4_3:54680400-54680419 None:intergenic 60.0%
CTGAACCGAGGCCTCTCTTC+TGG + chr4_3:54680409-54680428 Msa0648220:five_prime_UTR 60.0%
AGCATCTGGTGGAGCTGCTG+GGG + chr4_3:54682433-54682452 Msa0648220:CDS 60.0%
! TTGCGTGCTGTTGCAGGTGC+TGG + chr4_3:54683394-54683413 Msa0648220:CDS 60.0%
CCCTCTCGCGATCTGAACCG+AGG + chr4_3:54680397-54680416 Msa0648220:five_prime_UTR 65.0%
GCCTCGGTTCAGATCGCGAG+AGG - chr4_3:54680401-54680420 None:intergenic 65.0%
CCAGCGGGTCCTTTCTCTGC+TGG - chr4_3:54681595-54681614 None:intergenic 65.0%
CCAGCAGAGAAAGGACCCGC+TGG + chr4_3:54681592-54681611 Msa0648220:CDS 65.0%
!! GCAGGTGCTGGTGTGCTTGC+TGG + chr4_3:54683406-54683425 Msa0648220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54680281 54683796 54680281 ID=Msa0648220;Name=Msa0648220
chr4_3 mRNA 54680281 54683796 54680281 ID=Msa0648220-mRNA-1;Parent=Msa0648220;Name=Msa0648220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=171|1|1|1|0.75|0.4|5|270|370
chr4_3 exon 54680281 54680430 54680281 ID=Msa0648220-mRNA-1:exon:13820;Parent=Msa0648220-mRNA-1
chr4_3 exon 54681388 54681852 54681388 ID=Msa0648220-mRNA-1:exon:13821;Parent=Msa0648220-mRNA-1
chr4_3 exon 54682341 54682712 54682341 ID=Msa0648220-mRNA-1:exon:13822;Parent=Msa0648220-mRNA-1
chr4_3 exon 54683190 54683581 54683190 ID=Msa0648220-mRNA-1:exon:13823;Parent=Msa0648220-mRNA-1
chr4_3 exon 54683622 54683796 54683622 ID=Msa0648220-mRNA-1:exon:13824;Parent=Msa0648220-mRNA-1
chr4_3 five_prime_UTR 54680281 54680430 54680281 ID=Msa0648220-mRNA-1:five_prime_utr;Parent=Msa0648220-mRNA-1
chr4_3 five_prime_UTR 54681388 54681408 54681388 ID=Msa0648220-mRNA-1:five_prime_utr;Parent=Msa0648220-mRNA-1
chr4_3 CDS 54681409 54681852 54681409 ID=Msa0648220-mRNA-1:cds;Parent=Msa0648220-mRNA-1
chr4_3 CDS 54682341 54682712 54682341 ID=Msa0648220-mRNA-1:cds;Parent=Msa0648220-mRNA-1
chr4_3 CDS 54683190 54683486 54683190 ID=Msa0648220-mRNA-1:cds;Parent=Msa0648220-mRNA-1
chr4_3 three_prime_UTR 54683487 54683581 54683487 ID=Msa0648220-mRNA-1:three_prime_utr;Parent=Msa0648220-mRNA-1
chr4_3 three_prime_UTR 54683622 54683796 54683622 ID=Msa0648220-mRNA-1:three_prime_utr;Parent=Msa0648220-mRNA-1
Gene Sequence

>Msa0648220

ATGGCCGATGGACCACATCATCCATCAATTGCTCAGAAGATAGGTGGACATTCTTATTTGGTTTCCAGGCTTAGCGCCAACTCTAACTACAGGAATTACTCTACGTCCGGTACTTTCACTAATGGAGTGCAGACTTCTGGTTTGGCACTTGCGTCACCTCTGTCGTCATTTACTGTCCCTTCTCCAGCAGAGAAAGGACCCGCTGGATTTTTGATCGATTTTCTGATGGGAGGAGTGTCTGCTGCTGTGTCAAAGACAGCTGCTGCTCCTATTGAACGAATTAAATTGCTTATCCAAAACCAGGATGAAATGCTCAAAAGTGGCAGGTTATCTGAGCCATATAAGGGAATTGGTGACTGTTTTGCTCGAACCATGAAGGATGAGGGTATAATTGCTCTGTGGAGAGGCAATACTGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAATTTTAAAAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTAGCATCTGGTGGAGCTGCTGGGGCCTCCTCACTCCTATTTGTCTATTCTTTGGATTATGCCCGTACCCGTTTGGCAAATGACGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGAATGGTTGATGTTTACAAGAAAACCTTACAGTCTGATGGCATTGCTGGCCTTTATCGTGGATTCAACATCTCGTGTGTTGGAATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTCTTGGTTGGTGGGATGCAGGATAGTTTCTTTGCTAGTTTCCTGTTGGGATGGGGTATCACAATTGGTGCTGGTTTGGCCTCTTATCCCATTGACACTGTGCGTAGAAGAATGATGATGACTTCTGGAGAAGCTGTGAAGTATAACAGCTCTTTGCATGCATTCCAAACCATCGTTGCAAAAGAGGGTACTAAGTCTCTTTTCAAAGGTGCTGGTGCAAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAGCTGCAGCTGGTCTTGTTTGGAAAGAAATATGGTTCTGGCGGCGGCTAA
Protein sequence

>Msa0648220

MADGPHHPSIAQKIGGHSYLVSRLSANSNYRNYSTSGTFTNGVQTSGLALASPLSSFTVPSPAEKGPAGFLIDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMLKSGRLSEPYKGIGDCFARTMKDEGIIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGMVDVYKKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGMQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVLFGKKYGSGGG*