Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554750 | XP_003604349.1 | 98.621 | 290 | 4 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554750 | sp|Q9LVC8|COQ5_ARATH | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.10e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554750 | B7FL93 | 98.621 | 290 | 4 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0554750 | Msa0626830 | 0.971490 | 3.029753e-133 | -8.615850e-47 |
| Msa0554750 | Msa0664960 | 0.872767 | 2.468873e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554750 | MtrunA17_Chr4g0003041 | 98.621 | 290 | 4 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554750 | AT5G57300.3 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0554750 | AT5G57300.1 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0554750 | AT5G57300.4 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0554750 | AT5G57300.2 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0554750 | AT1G23360.1 | 28.736 | 261 | 155 | 7 | 31 | 280 | 12 | 252 | 8.62e-22 | 92.4 |
Find 98 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAGATTGTTCTTCTAAT+TGG | 0.136627 | 4_1:-52437176 | Msa0554750:three_prime_UTR |
| AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4_1:-52440725 | Msa0554750:exon |
| GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4_1:-52437374 | Msa0554750:CDS |
| GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4_1:+52437405 | None:intergenic |
| TTGCAAACACCTAATATTAA+TGG | 0.258533 | 4_1:+52437206 | None:intergenic |
| CAGCATTATGTTCCACTTCC+AGG | 0.259306 | 4_1:-52440666 | Msa0554750:CDS |
| TCTCGTTTCTCGCCTGGTTC+AGG | 0.292738 | 4_1:-52441009 | Msa0554750:intron |
| CATGATTTATTATATAATTA+CGG | 0.292739 | 4_1:+52437317 | None:intergenic |
| GATGGTTACACTATTGCATT+TGG | 0.299423 | 4_1:-52439089 | Msa0554750:CDS |
| GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4_1:-52439157 | Msa0554750:CDS |
| AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4_1:-52439296 | Msa0554750:intron |
| TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4_1:+52439317 | None:intergenic |
| ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4_1:-52440724 | Msa0554750:exon |
| TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4_1:+52439318 | None:intergenic |
| ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4_1:+52438853 | None:intergenic |
| TCCAATTAGAAGAACAATCT+TGG | 0.346971 | 4_1:+52437175 | None:intergenic |
| AAGTTTATTCCCCAACCTTT+TGG | 0.347857 | 4_1:+52440693 | None:intergenic |
| CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4_1:-52440114 | Msa0554750:intron |
| CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4_1:-52440637 | Msa0554750:intron |
| ATGATTTATTATATAATTAC+GGG | 0.363596 | 4_1:+52437318 | None:intergenic |
| TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4_1:+52440624 | None:intergenic |
| ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4_1:-52439082 | Msa0554750:CDS |
| AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4_1:-52439156 | Msa0554750:CDS |
| CCCGTCTCTCGTTTCTCGCC+TGG | 0.375748 | 4_1:-52441015 | Msa0554750:five_prime_UTR |
| GGAATAGTCACCAAAAGGTT+GGG | 0.387755 | 4_1:-52440703 | Msa0554750:CDS |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4_1:-52441150 | None:intergenic |
| CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4_1:-52438324 | Msa0554750:CDS |
| GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4_1:-52437398 | Msa0554750:CDS |
| AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4_1:+52440135 | None:intergenic |
| AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4_1:+52440434 | None:intergenic |
| TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4_1:-52439170 | Msa0554750:intron |
| TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4_1:-52437397 | Msa0554750:CDS |
| AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4_1:-52439040 | Msa0554750:intron |
| AACCATCCATTGAATCATCT+TGG | 0.445596 | 4_1:+52439105 | None:intergenic |
| ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4_1:+52440129 | None:intergenic |
| ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4_1:-52440432 | Msa0554750:CDS |
| CCAATTAGAAGAACAATCTT+GGG | 0.461393 | 4_1:+52437176 | None:intergenic |
| GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4_1:-52439149 | Msa0554750:CDS |
| AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4_1:-52438284 | Msa0554750:CDS |
| GAGTGTATGGTCTCAGCTAA+TGG | 0.468461 | 4_1:+52441114 | None:intergenic |
| GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4_1:+52438878 | None:intergenic |
| ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4_1:-52439088 | Msa0554750:CDS |
| ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4_1:+52438290 | None:intergenic |
| TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4_1:-52440407 | Msa0554750:intron |
| GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4_1:-52437431 | Msa0554750:CDS |
| TAGATACGAGTTTGTGAGAA+TGG | 0.480268 | 4_1:-52437244 | Msa0554750:three_prime_UTR |
| AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4_1:-52439153 | Msa0554750:CDS |
| GGGAATAGTCACCAAAAGGT+TGG | 0.494727 | 4_1:-52440704 | Msa0554750:CDS |
| ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4_1:-52440505 | Msa0554750:CDS |
| TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4_1:-52439107 | Msa0554750:CDS |
| TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4_1:-52439150 | Msa0554750:CDS |
| GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4_1:-52437373 | Msa0554750:CDS |
| CCAGGCGAGAAACGAGAGAC+GGG | 0.503692 | 4_1:+52441015 | None:intergenic |
| CTCACAAACTCGTATCTACT+AGG | 0.505688 | 4_1:+52437249 | None:intergenic |
| AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4_1:-52439320 | Msa0554750:CDS |
| CTTTGGGAATAGTCACCAAA+AGG | 0.511333 | 4_1:-52440708 | Msa0554750:CDS |
| GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4_1:-52440492 | Msa0554750:CDS |
| GAGTTTCCAAGATGATTCAA+TGG | 0.519909 | 4_1:-52439111 | Msa0554750:CDS |
| CACGGAAGCGTAGAGGGCGG+TGG | 0.520965 | 4_1:+52441083 | None:intergenic |
| GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4_1:+52440648 | None:intergenic |
| AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4_1:+52440654 | None:intergenic |
| CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4_1:+52439144 | None:intergenic |
| CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4_1:-52440496 | Msa0554750:CDS |
| GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4_1:-52438909 | Msa0554750:CDS |
| TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4_1:-52438339 | Msa0554750:CDS |
| CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4_1:-52437430 | Msa0554750:CDS |
| TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4_1:-52439403 | Msa0554750:CDS |
| ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4_1:-52440123 | Msa0554750:CDS |
| CTGGAAGTGGAACATAATGC+TGG | 0.574988 | 4_1:+52440667 | None:intergenic |
| AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4_1:-52437396 | Msa0554750:CDS |
| TTGCCACACGGAAGCGTAGA+GGG | 0.577744 | 4_1:+52441077 | None:intergenic |
| TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4_1:-52438331 | Msa0554750:CDS |
| GAGAGAAGAAGAGAGAAGAG+AGG | 0.582470 | 4_1:+52441037 | None:intergenic |
| CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4_1:+52438884 | None:intergenic |
| GAATAGTCACCAAAAGGTTG+GGG | 0.588614 | 4_1:-52440702 | Msa0554750:CDS |
| AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4_1:-52439392 | Msa0554750:CDS |
| GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4_1:-52439309 | Msa0554750:CDS |
| TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4_1:-52438916 | Msa0554750:intron |
| TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4_1:-52440431 | Msa0554750:CDS |
| AAGCAATTCTTACCTGAACC+AGG | 0.613905 | 4_1:+52440997 | None:intergenic |
| TTTGCCACACGGAAGCGTAG+AGG | 0.616595 | 4_1:+52441076 | None:intergenic |
| TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4_1:+52438866 | None:intergenic |
| TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4_1:-52440127 | Msa0554750:CDS |
| GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4_1:+52438327 | None:intergenic |
| ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4_1:-52439404 | Msa0554750:CDS |
| ACCAGGCGAGAAACGAGAGA+CGG | 0.632914 | 4_1:+52441014 | None:intergenic |
| AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4_1:+52438255 | None:intergenic |
| GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4_1:-52437395 | Msa0554750:CDS |
| TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4_1:+52440146 | None:intergenic |
| TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4_1:-52439310 | Msa0554750:CDS |
| GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4_1:+52438254 | None:intergenic |
| ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4_1:+52439145 | None:intergenic |
| AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4_1:-52440120 | Msa0554750:CDS |
| CCGCCCTCTACGCTTCCGTG+TGG | 0.691726 | 4_1:-52441080 | Msa0554750:five_prime_UTR |
| CCACACGGAAGCGTAGAGGG+CGG | 0.697309 | 4_1:+52441080 | None:intergenic |
| AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4_1:-52438913 | Msa0554750:intron |
| ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4_1:+52440627 | None:intergenic |
| GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4_1:-52440416 | Msa0554750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTAACTAAAAAAA+TGG | + | chr4_1:52437680-52437699 | None:intergenic | 10.0% |
| !! | GTAATAATTTAAAAAAGAAA+TGG | + | chr4_1:52438016-52438035 | None:intergenic | 10.0% |
| !! | AATTAAATAATGAATAACAT+AGG | + | chr4_1:52440245-52440264 | None:intergenic | 10.0% |
| !!! | ACTAGTTTTTTTTTTTTTTT+AGG | + | chr4_1:52440615-52440634 | None:intergenic | 10.0% |
| !! | ATGATTTATTATATAATTAC+GGG | + | chr4_1:52440958-52440977 | None:intergenic | 10.0% |
| !! | CATGATTTATTATATAATTA+CGG | + | chr4_1:52440959-52440978 | None:intergenic | 10.0% |
| !!! | TTATTTTTTCCATTAATATT+AGG | - | chr4_1:52441058-52441077 | Msa0554750:five_prime_UTR | 10.0% |
| !!! | ACATTTTTCCATAAAAAATT+AGG | - | chr4_1:52437739-52437758 | Msa0554750:intron | 15.0% |
| !! | AATTATTTATAGAATGGAAT+AGG | + | chr4_1:52437900-52437919 | None:intergenic | 15.0% |
| !! | TTAGAAACTATAAAGTTTAA+AGG | + | chr4_1:52438204-52438223 | None:intergenic | 15.0% |
| !! | TATAATCATTAATAAGCATA+AGG | - | chr4_1:52438797-52438816 | Msa0554750:intron | 15.0% |
| !!! | GATTTTTTATTGATTTTACA+GGG | - | chr4_1:52438819-52438838 | Msa0554750:intron | 15.0% |
| !!! | ATTTTTTATTGATTTTACAG+GGG | - | chr4_1:52438820-52438839 | Msa0554750:intron | 15.0% |
| !! | TTAATTTATCTTCATTTGTT+AGG | - | chr4_1:52439058-52439077 | Msa0554750:CDS | 15.0% |
| !!! | TTTTTTTCATTTCTTTAACA+GGG | - | chr4_1:52439344-52439363 | Msa0554750:CDS | 15.0% |
| !! | TACAAGGTATATAAATTAAA+GGG | + | chr4_1:52439572-52439591 | None:intergenic | 15.0% |
| !! | TTACAAGGTATATAAATTAA+AGG | + | chr4_1:52439573-52439592 | None:intergenic | 15.0% |
| !! | AATAATGAAAAAAACATCAC+TGG | + | chr4_1:52437484-52437503 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTCTTTGTTATTT+AGG | - | chr4_1:52437520-52437539 | Msa0554750:intron | 20.0% |
| !! | AAACAAATAATATTAACCTG+TGG | - | chr4_1:52437692-52437711 | Msa0554750:intron | 20.0% |
| !!! | GTTTGAAACCTAATTTTTTA+TGG | + | chr4_1:52437750-52437769 | None:intergenic | 20.0% |
| !!! | ATATAAAATGTTACTTTGAG+TGG | - | chr4_1:52438227-52438246 | Msa0554750:intron | 20.0% |
| !! | CATGAGATATCAATAAATAA+GGG | - | chr4_1:52438307-52438326 | Msa0554750:CDS | 20.0% |
| !!! | GGATTTTTTATTGATTTTAC+AGG | - | chr4_1:52438818-52438837 | Msa0554750:intron | 20.0% |
| !!! | GTTTTTATGCTTATTTTGAT+AGG | - | chr4_1:52439088-52439107 | Msa0554750:CDS | 20.0% |
| !!! | GTTTTTTTCATTTCTTTAAC+AGG | - | chr4_1:52439343-52439362 | Msa0554750:CDS | 20.0% |
| !!! | TCGATTATGTTTTATTTACA+AGG | + | chr4_1:52439588-52439607 | None:intergenic | 20.0% |
| !! | AAACATAATCGAAGTTTATA+TGG | - | chr4_1:52439596-52439615 | Msa0554750:intron | 20.0% |
| !!! | TACTTTCATACTTCAAATTT+TGG | - | chr4_1:52439639-52439658 | Msa0554750:intron | 20.0% |
| !! | AGTTATATTCTATTCAAGTA+TGG | + | chr4_1:52439871-52439890 | None:intergenic | 20.0% |
| !! | TGACTAATGTATTATATTGA+TGG | - | chr4_1:52440803-52440822 | Msa0554750:intron | 20.0% |
| ! | TTTGCAAAGAAAAGAACATA+AGG | + | chr4_1:52437349-52437368 | None:intergenic | 25.0% |
| !!! | TTTCATTATTGCTGACTTAT+TGG | - | chr4_1:52437494-52437513 | Msa0554750:intron | 25.0% |
| !!! | TTCATTATTGCTGACTTATT+GGG | - | chr4_1:52437495-52437514 | Msa0554750:intron | 25.0% |
| !!! | GTTTTGAACAATCAAATTCA+TGG | - | chr4_1:52437542-52437561 | Msa0554750:intron | 25.0% |
| ! | GCATGAGATATCAATAAATA+AGG | - | chr4_1:52438306-52438325 | Msa0554750:CDS | 25.0% |
| ! | ACCTTATATAAACAGAAACT+TGG | + | chr4_1:52438439-52438458 | None:intergenic | 25.0% |
| ! | TTGAAAAATATGTAGTGTGT+GGG | - | chr4_1:52438495-52438514 | Msa0554750:intron | 25.0% |
| ! | TCTCCATATTAATGCAATAT+TGG | + | chr4_1:52438739-52438758 | None:intergenic | 25.0% |
| !! | ACATTCTCATTTACCTTTTT+CGG | + | chr4_1:52438993-52439012 | None:intergenic | 25.0% |
| !!! | ATGCTTATTTTGATAGGTTA+TGG | - | chr4_1:52439094-52439113 | Msa0554750:CDS | 25.0% |
| ! | TAAATATAGGAAGACTAACA+TGG | + | chr4_1:52439410-52439429 | None:intergenic | 25.0% |
| ! | ACTCACAGTTCTTTAAATAT+AGG | + | chr4_1:52439423-52439442 | None:intergenic | 25.0% |
| ! | TTGAAGTATGAAAGTAAACA+AGG | + | chr4_1:52439635-52439654 | None:intergenic | 25.0% |
| !! | TTTTGGACAAAAGAATTAAG+AGG | - | chr4_1:52439656-52439675 | Msa0554750:intron | 25.0% |
| !! | GGATATATCTTTGAAAATTG+AGG | - | chr4_1:52439782-52439801 | Msa0554750:intron | 25.0% |
| ! | TTTGAAAATTGAGGAATTCT+CGG | - | chr4_1:52439791-52439810 | Msa0554750:intron | 25.0% |
| !!! | TCATTTTAGCTTGAAAGAAA+AGG | - | chr4_1:52440068-52440087 | Msa0554750:intron | 25.0% |
| !!! | CATTTTAGCTTGAAAGAAAA+GGG | - | chr4_1:52440069-52440088 | Msa0554750:intron | 25.0% |
| ! | ACTAAAGCATATAAAGATGT+TGG | + | chr4_1:52440168-52440187 | None:intergenic | 25.0% |
| ! | ATAATGAATAACATAGGAGA+TGG | + | chr4_1:52440239-52440258 | None:intergenic | 25.0% |
| !! | AGATCAGATATACTCATTTT+GGG | - | chr4_1:52440401-52440420 | Msa0554750:intron | 25.0% |
| !!! | ACTGTGTAGTTTTTTTATGT+TGG | - | chr4_1:52440679-52440698 | Msa0554750:CDS | 25.0% |
| ! | ACATTAGTCAATACAGAAAA+GGG | + | chr4_1:52440793-52440812 | None:intergenic | 25.0% |
| ! | TACATTAGTCAATACAGAAA+AGG | + | chr4_1:52440794-52440813 | None:intergenic | 25.0% |
| ! | TTGCAAACACCTAATATTAA+TGG | + | chr4_1:52441070-52441089 | None:intergenic | 25.0% |
| ! | TCTTTTCTTTGCAAATTGCT+CGG | - | chr4_1:52437354-52437373 | Msa0554750:exon | 30.0% |
| AACAATCAAATTCATGGCTT+TGG | - | chr4_1:52437548-52437567 | Msa0554750:intron | 30.0% | |
| ACAATCAAATTCATGGCTTT+GGG | - | chr4_1:52437549-52437568 | Msa0554750:intron | 30.0% | |
| ACATGTAAACGAAGAAGAAA+AGG | - | chr4_1:52437768-52437787 | Msa0554750:intron | 30.0% | |
| AGCACTCATTAAATCATTCA+TGG | + | chr4_1:52437842-52437861 | None:intergenic | 30.0% | |
| ATGAATGATTTAATGAGTGC+TGG | - | chr4_1:52437841-52437860 | Msa0554750:intron | 30.0% | |
| TGAATGATTTAATGAGTGCT+GGG | - | chr4_1:52437842-52437861 | Msa0554750:intron | 30.0% | |
| CGACATTAATGCGTAAAAAT+CGG | + | chr4_1:52438038-52438057 | None:intergenic | 30.0% | |
| AATCCTATACAGAACTAACA+CGG | + | chr4_1:52438064-52438083 | None:intergenic | 30.0% | |
| TAATTTCTGCTCAATTTCTC+AGG | - | chr4_1:52438097-52438116 | Msa0554750:intron | 30.0% | |
| AAGTTTAAAGGTGAGTATGA+AGG | + | chr4_1:52438192-52438211 | None:intergenic | 30.0% | |
| TGTAGTAGCAGTTAGATAAA+AGG | - | chr4_1:52438265-52438284 | Msa0554750:intron | 30.0% | |
| TGTTACAGATAATGTGAGAT+TGG | - | chr4_1:52438407-52438426 | Msa0554750:intron | 30.0% | |
| GCCAAGTTTCTGTTTATATA+AGG | - | chr4_1:52438435-52438454 | Msa0554750:intron | 30.0% | |
| CTTGAAAAATATGTAGTGTG+TGG | - | chr4_1:52438494-52438513 | Msa0554750:intron | 30.0% | |
| GTAAAAGAAGTGATGAAGTA+TGG | - | chr4_1:52438517-52438536 | Msa0554750:intron | 30.0% | |
| TCGCCAATATTGCATTAATA+TGG | - | chr4_1:52438733-52438752 | Msa0554750:intron | 30.0% | |
| ATTAATATGGAGAGACTTGA+AGG | - | chr4_1:52438746-52438765 | Msa0554750:intron | 30.0% | |
| TTAATATGGAGAGACTTGAA+GGG | - | chr4_1:52438747-52438766 | Msa0554750:intron | 30.0% | |
| ATGGTTACACTATTGCATTT+GGG | - | chr4_1:52439185-52439204 | Msa0554750:intron | 30.0% | |
| !! | TTTAACAGGGTATTGAAACA+TGG | - | chr4_1:52439357-52439376 | Msa0554750:CDS | 30.0% |
| TTCTCAAGAATGATGTGAAT+TGG | - | chr4_1:52439458-52439477 | Msa0554750:intron | 30.0% | |
| AAACAACAGATAATGTGTCT+CGG | - | chr4_1:52439680-52439699 | Msa0554750:intron | 30.0% | |
| TTCTATTCAAGTATGGAAGA+AGG | + | chr4_1:52439864-52439883 | None:intergenic | 30.0% | |
| TAAGTACAGCTATCAATAGA+AGG | + | chr4_1:52440040-52440059 | None:intergenic | 30.0% | |
| TAATTGAAACCCAAGAAAAG+AGG | - | chr4_1:52440260-52440279 | Msa0554750:intron | 30.0% | |
| ! | ATACAAAAGCCTCTTTTCTT+GGG | + | chr4_1:52440272-52440291 | None:intergenic | 30.0% |
| ! | TATACAAAAGCCTCTTTTCT+TGG | + | chr4_1:52440273-52440292 | None:intergenic | 30.0% |
| ! | GAGATCAGATATACTCATTT+TGG | - | chr4_1:52440400-52440419 | Msa0554750:intron | 30.0% |
| TGTAATTGACACGATAAAGT+GGG | + | chr4_1:52440427-52440446 | None:intergenic | 30.0% | |
| TTGTAATTGACACGATAAAG+TGG | + | chr4_1:52440428-52440447 | None:intergenic | 30.0% | |
| GAACATGTAAAAACTAGTCA+CGG | - | chr4_1:52440465-52440484 | Msa0554750:CDS | 30.0% | |
| !! | GTATTATATTGATGGATTGC+AGG | - | chr4_1:52440811-52440830 | Msa0554750:intron | 30.0% |
| TAGAGTATGAGAATCTAGTT+GGG | - | chr4_1:52440876-52440895 | Msa0554750:intron | 30.0% | |
| ! | GATTTTTATCCCTGAATGAA+TGG | + | chr4_1:52440912-52440931 | None:intergenic | 30.0% |
| CCAATTAGAAGAACAATCTT+GGG | + | chr4_1:52441100-52441119 | None:intergenic | 30.0% | |
| TCCAATTAGAAGAACAATCT+TGG | + | chr4_1:52441101-52441120 | None:intergenic | 30.0% | |
| ! | AAGTTTATTCCCCAACCTTT+TGG | + | chr4_1:52437583-52437602 | None:intergenic | 35.0% |
| TGAATGTAACTAACCGAAAC+TGG | + | chr4_1:52437652-52437671 | None:intergenic | 35.0% | |
| TCAGAGGGATATAGTTCAAA+AGG | - | chr4_1:52438545-52438564 | Msa0554750:intron | 35.0% | |
| ATGCTGTAAAATTCTCACCA+TGG | - | chr4_1:52438576-52438595 | Msa0554750:intron | 35.0% | |
| TGCTGTAAAATTCTCACCAT+GGG | - | chr4_1:52438577-52438596 | Msa0554750:intron | 35.0% | |
| TACAGCTATACCCTATGAAA+GGG | + | chr4_1:52438683-52438702 | None:intergenic | 35.0% | |
| ATACAGCTATACCCTATGAA+AGG | + | chr4_1:52438684-52438703 | None:intergenic | 35.0% | |
| !!! | GGATGTTGCTTTTAGAATCT+TGG | - | chr4_1:52438841-52438860 | Msa0554750:intron | 35.0% |
| ATAAACAGAGTTAAGCAGAG+AGG | - | chr4_1:52438869-52438888 | Msa0554750:CDS | 35.0% | |
| TAAACAGAGTTAAGCAGAGA+GGG | - | chr4_1:52438870-52438889 | Msa0554750:CDS | 35.0% | |
| AACCCAAACATGTTGAATGT+TGG | - | chr4_1:52438953-52438972 | Msa0554750:intron | 35.0% | |
| TGCCAACATTCAACATGTTT+GGG | + | chr4_1:52438958-52438977 | None:intergenic | 35.0% | |
| TTGCCAACATTCAACATGTT+TGG | + | chr4_1:52438959-52438978 | None:intergenic | 35.0% | |
| TTGATAGGTTATGGAGAAGA+TGG | - | chr4_1:52439103-52439122 | Msa0554750:CDS | 35.0% | |
| GAGTTTCCAAGATGATTCAA+TGG | - | chr4_1:52439162-52439181 | Msa0554750:CDS | 35.0% | |
| TTCCAAGATGATTCAATGGA+TGG | - | chr4_1:52439166-52439185 | Msa0554750:CDS | 35.0% | |
| AACCATCCATTGAATCATCT+TGG | + | chr4_1:52439171-52439190 | None:intergenic | 35.0% | |
| GATGGTTACACTATTGCATT+TGG | - | chr4_1:52439184-52439203 | Msa0554750:intron | 35.0% | |
| ! | ACACTATTGCATTTGGGATA+AGG | - | chr4_1:52439191-52439210 | Msa0554750:intron | 35.0% |
| AAGTTCTTAGTGAAGCTCAT+AGG | - | chr4_1:52439233-52439252 | Msa0554750:intron | 35.0% | |
| ! | GAATGATGTGAATTGGTGTT+TGG | - | chr4_1:52439465-52439484 | Msa0554750:intron | 35.0% |
| AACAACAGATAATGTGTCTC+GGG | - | chr4_1:52439681-52439700 | Msa0554750:intron | 35.0% | |
| !! | TTGCTTATCGCTTGTTTCTA+AGG | + | chr4_1:52439738-52439757 | None:intergenic | 35.0% |
| !! | ACTCTCAACTAAGTACTGAT+AGG | + | chr4_1:52439986-52440005 | None:intergenic | 35.0% |
| !! | AGTACTTAGTTGAGAGTATC+CGG | - | chr4_1:52439989-52440008 | Msa0554750:intron | 35.0% |
| ! | AGAAGGAATTGATAACCTGT+GGG | + | chr4_1:52440023-52440042 | None:intergenic | 35.0% |
| ! | TAGAAGGAATTGATAACCTG+TGG | + | chr4_1:52440024-52440043 | None:intergenic | 35.0% |
| CATCTTGTAGAAGGATCTAT+AGG | + | chr4_1:52440122-52440141 | None:intergenic | 35.0% | |
| GATGGTCATTATCAACCAAT+TGG | + | chr4_1:52440221-52440240 | None:intergenic | 35.0% | |
| TTGGCAATGTCGATATTGTT+AGG | - | chr4_1:52440507-52440526 | Msa0554750:CDS | 35.0% | |
| GATTCTCATACTCTACTTTC+TGG | + | chr4_1:52440871-52440890 | None:intergenic | 35.0% | |
| GTAGAGTATGAGAATCTAGT+TGG | - | chr4_1:52440875-52440894 | Msa0554750:intron | 35.0% | |
| AGAGTATGAGAATCTAGTTG+GGG | - | chr4_1:52440877-52440896 | Msa0554750:intron | 35.0% | |
| TAGATACGAGTTTGTGAGAA+TGG | - | chr4_1:52441029-52441048 | Msa0554750:five_prime_UTR | 35.0% | |
| CCCAAGATTGTTCTTCTAAT+TGG | - | chr4_1:52441097-52441116 | Msa0554750:intron | 35.0% | |
| AAGCAATTCTTACCTGAACC+AGG | + | chr4_1:52437279-52437298 | None:intergenic | 40.0% | |
| TGGTTCAGGTAAGAATTGCT+TGG | - | chr4_1:52437278-52437297 | Msa0554750:three_prime_UTR | 40.0% | |
| !!! | TCGGTCACATTAGTTTTGCT+TGG | - | chr4_1:52437373-52437392 | Msa0554750:CDS | 40.0% |
| !! | TTGCTTGGTTTGTGACAGTT+TGG | - | chr4_1:52437388-52437407 | Msa0554750:CDS | 40.0% |
| ! | CTTTGGGAATAGTCACCAAA+AGG | - | chr4_1:52437565-52437584 | Msa0554750:intron | 40.0% |
| GGAATAGTCACCAAAAGGTT+GGG | - | chr4_1:52437570-52437589 | Msa0554750:intron | 40.0% | |
| GAATAGTCACCAAAAGGTTG+GGG | - | chr4_1:52437571-52437590 | Msa0554750:intron | 40.0% | |
| ATGTAACTAACCGAAACTGG+TGG | + | chr4_1:52437649-52437668 | None:intergenic | 40.0% | |
| TCAATTTCACAATGCTCCAC+AGG | + | chr4_1:52437711-52437730 | None:intergenic | 40.0% | |
| TGCATAGACTGTGGAAAGAA+AGG | - | chr4_1:52437866-52437885 | Msa0554750:intron | 40.0% | |
| AGATTTGTCCTATGTTGCAC+CGG | - | chr4_1:52437944-52437963 | Msa0554750:intron | 40.0% | |
| GTCATGTTTGTATCCTACAC+CGG | + | chr4_1:52437966-52437985 | None:intergenic | 40.0% | |
| !! | TGTCCGTGTTAGTTCTGTAT+AGG | - | chr4_1:52438058-52438077 | Msa0554750:intron | 40.0% |
| ! | TCCATGTTGAATCCTTTTCC+TGG | - | chr4_1:52438126-52438145 | Msa0554750:intron | 40.0% |
| TCCAGGAAAAGGATTCAACA+TGG | + | chr4_1:52438130-52438149 | None:intergenic | 40.0% | |
| AGATGCTTCATTCCAGGAAA+AGG | + | chr4_1:52438141-52438160 | None:intergenic | 40.0% | |
| ACATCAAGATGCTTCATTCC+AGG | + | chr4_1:52438147-52438166 | None:intergenic | 40.0% | |
| ! | TGGAATGAAGCATCTTGATG+TGG | - | chr4_1:52438146-52438165 | Msa0554750:intron | 40.0% |
| AGAAGTGATGAAGTATGGAC+TGG | - | chr4_1:52438522-52438541 | Msa0554750:intron | 40.0% | |
| GCTGTAAAATTCTCACCATG+GGG | - | chr4_1:52438578-52438597 | Msa0554750:intron | 40.0% | |
| AAGTGGTTCCAACCTTTCAT+TGG | + | chr4_1:52438608-52438627 | None:intergenic | 40.0% | |
| ATGAAAGGGACTGTATGACT+AGG | + | chr4_1:52438669-52438688 | None:intergenic | 40.0% | |
| AGTCATACAGTCCCTTTCAT+AGG | - | chr4_1:52438669-52438688 | Msa0554750:intron | 40.0% | |
| GTCATACAGTCCCTTTCATA+GGG | - | chr4_1:52438670-52438689 | Msa0554750:intron | 40.0% | |
| !! | CGGTTTTATCGATGTTCTAG+AGG | - | chr4_1:52438901-52438920 | Msa0554750:CDS | 40.0% |
| TGTTGAATGTTGGCAAACAG+CGG | - | chr4_1:52438963-52438982 | Msa0554750:intron | 40.0% | |
| ATTACTTCGAGCTTTCGTGA+AGG | - | chr4_1:52439027-52439046 | Msa0554750:intron | 40.0% | |
| ! | AGAAGATGGTTCCCTTGTTT+GGG | - | chr4_1:52439117-52439136 | Msa0554750:CDS | 40.0% |
| TCTTAGTGAAGCTCATAGGT+TGG | - | chr4_1:52439237-52439256 | Msa0554750:intron | 40.0% | |
| !! | AACAGGGTATTGAAACATGG+CGG | - | chr4_1:52439360-52439379 | Msa0554750:CDS | 40.0% |
| GACTAACATGGCTTAGTTCA+AGG | + | chr4_1:52439398-52439417 | None:intergenic | 40.0% | |
| ACAACAGATAATGTGTCTCG+GGG | - | chr4_1:52439682-52439701 | Msa0554750:intron | 40.0% | |
| ! | AAAGCGCTAGAGAATTGTGT+GGG | - | chr4_1:52439756-52439775 | Msa0554750:intron | 40.0% |
| ! | GGTTCACGAGTTAATTTGGT+TGG | + | chr4_1:52439817-52439836 | None:intergenic | 40.0% |
| ACGTGGTTCACGAGTTAATT+TGG | + | chr4_1:52439821-52439840 | None:intergenic | 40.0% | |
| TGATTCTATGGCACTTTACG+TGG | + | chr4_1:52439838-52439857 | None:intergenic | 40.0% | |
| GGAAGAAGGCTATGATTCTA+TGG | + | chr4_1:52439850-52439869 | None:intergenic | 40.0% | |
| TGTTACTCTTCTTCTCTTGC+AGG | - | chr4_1:52439896-52439915 | Msa0554750:intron | 40.0% | |
| TTCTCAGTTATTCCACGCAT+AGG | - | chr4_1:52439934-52439953 | Msa0554750:intron | 40.0% | |
| ! | AAGGAATTGATAACCTGTGG+GGG | + | chr4_1:52440021-52440040 | None:intergenic | 40.0% |
| ! | GAAGGAATTGATAACCTGTG+GGG | + | chr4_1:52440022-52440041 | None:intergenic | 40.0% |
| CTTGAAAGAAAAGGGTAGTC+AGG | - | chr4_1:52440077-52440096 | Msa0554750:intron | 40.0% | |
| TCTATAGGTCTGTTCAGGAA+TGG | + | chr4_1:52440107-52440126 | None:intergenic | 40.0% | |
| AAGGATCTATAGGTCTGTTC+AGG | + | chr4_1:52440112-52440131 | None:intergenic | 40.0% | |
| AGATCCTTCTACAAGATGTC+CGG | - | chr4_1:52440124-52440143 | Msa0554750:CDS | 40.0% | |
| ! | GTGAATAAAAGCGTAGAGTG+AGG | - | chr4_1:52440186-52440205 | Msa0554750:intron | 40.0% |
| TCTGATCTCAACATTGTCTG+CGG | + | chr4_1:52440389-52440408 | None:intergenic | 40.0% | |
| TCGACATTGCCAATTAAGCT+AGG | + | chr4_1:52440500-52440519 | None:intergenic | 40.0% | |
| CAATGTCGATATTGTTAGGC+TGG | - | chr4_1:52440511-52440530 | Msa0554750:CDS | 40.0% | |
| CTGAAACTCACATAACTGTG+AGG | + | chr4_1:52440565-52440584 | None:intergenic | 40.0% | |
| CTCACAGTTATGTGAGTTTC+AGG | - | chr4_1:52440563-52440582 | Msa0554750:intron | 40.0% | |
| ACAGTTATGTGAGTTTCAGG+TGG | - | chr4_1:52440566-52440585 | Msa0554750:intron | 40.0% | |
| AAATGTCAAGAAAGCCGTGA+CGG | - | chr4_1:52440763-52440782 | Msa0554750:intron | 40.0% | |
| CATCAATGATTGCTGATGCA+GGG | - | chr4_1:52440843-52440862 | Msa0554750:intron | 40.0% | |
| GAGTATGAGAATCTAGTTGG+GGG | - | chr4_1:52440878-52440897 | Msa0554750:intron | 40.0% | |
| CTCACAAACTCGTATCTACT+AGG | + | chr4_1:52441027-52441046 | None:intergenic | 40.0% | |
| GAGTGTATGGTCTCAGCTAA+TGG | + | chr4_1:52437162-52437181 | None:intergenic | 45.0% | |
| GAGAGAAGAAGAGAGAAGAG+AGG | + | chr4_1:52437239-52437258 | None:intergenic | 45.0% | |
| GGGAATAGTCACCAAAAGGT+TGG | - | chr4_1:52437569-52437588 | Msa0554750:intron | 45.0% | |
| CTGGAAGTGGAACATAATGC+TGG | + | chr4_1:52437609-52437628 | None:intergenic | 45.0% | |
| CAGCATTATGTTCCACTTCC+AGG | - | chr4_1:52437607-52437626 | Msa0554750:intron | 45.0% | |
| AGAATGTAGAAGCCTGGAAG+TGG | + | chr4_1:52437622-52437641 | None:intergenic | 45.0% | |
| ! | ATGAAGCATCTTGATGTGGC+TGG | - | chr4_1:52438150-52438169 | Msa0554750:intron | 45.0% |
| !! | ATGAAGTATGGACTGGTCAG+AGG | - | chr4_1:52438529-52438548 | Msa0554750:intron | 45.0% |
| !! | TGAAGTATGGACTGGTCAGA+GGG | - | chr4_1:52438530-52438549 | Msa0554750:intron | 45.0% |
| GTAAAATTCTCACCATGGGG+AGG | - | chr4_1:52438581-52438600 | Msa0554750:intron | 45.0% | |
| AAAGGTTGGAACCACTTGTG+AGG | - | chr4_1:52438611-52438630 | Msa0554750:intron | 45.0% | |
| AAGGTTGGAACCACTTGTGA+GGG | - | chr4_1:52438612-52438631 | Msa0554750:intron | 45.0% | |
| GTTGAATGTTGGCAAACAGC+GGG | - | chr4_1:52438964-52438983 | Msa0554750:intron | 45.0% | |
| GAGAAGATGGTTCCCTTGTT+TGG | - | chr4_1:52439116-52439135 | Msa0554750:CDS | 45.0% | |
| ATTTCCCTCCACCCAAACAA+GGG | + | chr4_1:52439131-52439150 | None:intergenic | 45.0% | |
| CATGGCTTAGTTCAAGGCAT+AGG | + | chr4_1:52439392-52439411 | None:intergenic | 45.0% | |
| CAACAGATAATGTGTCTCGG+GGG | - | chr4_1:52439683-52439702 | Msa0554750:intron | 45.0% | |
| ! | CAAAGCGCTAGAGAATTGTG+TGG | - | chr4_1:52439755-52439774 | Msa0554750:intron | 45.0% |
| GCTAGAGAATTGTGTGGGAA+AGG | - | chr4_1:52439761-52439780 | Msa0554750:intron | 45.0% | |
| TATTCCACGCATAGGAGAGA+TGG | - | chr4_1:52439942-52439961 | Msa0554750:intron | 45.0% | |
| GTATCCGGACATCTTGTAGA+AGG | + | chr4_1:52440131-52440150 | None:intergenic | 45.0% | |
| GCAGTGAACTGAACTGTATC+CGG | + | chr4_1:52440146-52440165 | None:intergenic | 45.0% | |
| AAAGCGTAGAGTGAGGAAGA+TGG | - | chr4_1:52440193-52440212 | Msa0554750:intron | 45.0% | |
| AAGCGTAGAGTGAGGAAGAT+GGG | - | chr4_1:52440194-52440213 | Msa0554750:intron | 45.0% | |
| ACAGCTGAATGTGGAAGACT+GGG | + | chr4_1:52440313-52440332 | None:intergenic | 45.0% | |
| TACAGCTGAATGTGGAAGAC+TGG | + | chr4_1:52440314-52440333 | None:intergenic | 45.0% | |
| CTTCCACATTCAGCTGTAAG+AGG | - | chr4_1:52440316-52440335 | Msa0554750:intron | 45.0% | |
| CTTCCTCTTACAGCTGAATG+TGG | + | chr4_1:52440322-52440341 | None:intergenic | 45.0% | |
| CACATTCAGCTGTAAGAGGA+AGG | - | chr4_1:52440320-52440339 | Msa0554750:intron | 45.0% | |
| AAAACTAGTCACGGTCCGTA+AGG | - | chr4_1:52440474-52440493 | Msa0554750:CDS | 45.0% | |
| TCCGTAAGGCCTAGCTTAAT+TGG | - | chr4_1:52440488-52440507 | Msa0554750:CDS | 45.0% | |
| GCCAATTAAGCTAGGCCTTA+CGG | + | chr4_1:52440492-52440511 | None:intergenic | 45.0% | |
| TTAGGCTGGACATCTTCATC+CGG | - | chr4_1:52440525-52440544 | Msa0554750:intron | 45.0% | |
| CACGGCTTTCTTGACATTTG+AGG | + | chr4_1:52440762-52440781 | None:intergenic | 45.0% | |
| AATGTCAAGAAAGCCGTGAC+GGG | - | chr4_1:52440764-52440783 | Msa0554750:intron | 45.0% | |
| GCATCAATGATTGCTGATGC+AGG | - | chr4_1:52440842-52440861 | Msa0554750:intron | 45.0% | |
| GAGTGGTTGCCATTCATTCA+GGG | - | chr4_1:52440900-52440919 | Msa0554750:intron | 45.0% | |
| !! | AATATAAATTATTTATAGAA+TGG | + | chr4_1:52437906-52437925 | None:intergenic | 5.0% |
| !! | AATTAAAAATTTAAGTAAAT+TGG | - | chr4_1:52438465-52438484 | Msa0554750:intron | 5.0% |
| ! | GGTGGCGAACAAAGAGTGTA+TGG | + | chr4_1:52437175-52437194 | None:intergenic | 50.0% |
| GTGTGTGTGTGTTTGCCACA+CGG | + | chr4_1:52437211-52437230 | None:intergenic | 50.0% | |
| CATTCTCACGCCACCAGTTT+CGG | - | chr4_1:52437636-52437655 | Msa0554750:intron | 50.0% | |
| ! | CGAAGAAGAAAAGGCACGCA+TGG | - | chr4_1:52437777-52437796 | Msa0554750:intron | 50.0% |
| ! | GAAGAAAAGGCACGCATGGT+TGG | - | chr4_1:52437781-52437800 | Msa0554750:intron | 50.0% |
| ATCCTACACCGGTGCAACAT+AGG | + | chr4_1:52437955-52437974 | None:intergenic | 50.0% | |
| AAGCATCTTGATGTGGCTGG+TGG | - | chr4_1:52438153-52438172 | Msa0554750:intron | 50.0% | |
| AGTCTAGAGACCCTCACAAG+TGG | + | chr4_1:52438625-52438644 | None:intergenic | 50.0% | |
| GGACTGTATGACTAGGACGA+TGG | + | chr4_1:52438662-52438681 | None:intergenic | 50.0% | |
| AAGCAGAGAGGGCTTCAAGA+CGG | - | chr4_1:52438881-52438900 | Msa0554750:CDS | 50.0% | |
| ! | AGATGGTTCCCTTGTTTGGG+TGG | - | chr4_1:52439120-52439139 | Msa0554750:CDS | 50.0% |
| CATTTCCCTCCACCCAAACA+AGG | + | chr4_1:52439132-52439151 | None:intergenic | 50.0% | |
| GTGAGGAAGATGGGTCCAAT+TGG | - | chr4_1:52440203-52440222 | Msa0554750:intron | 50.0% | |
| CAGCTGAATGTGGAAGACTG+GGG | + | chr4_1:52440312-52440331 | None:intergenic | 50.0% | |
| TAGGCTGGACATCTTCATCC+GGG | - | chr4_1:52440526-52440545 | Msa0554750:intron | 50.0% | |
| TCTTCATCCGGGTTCAAACC+CGG | - | chr4_1:52440537-52440556 | Msa0554750:intron | 50.0% | |
| TCACATAACTGTGAGGTCCC+GGG | + | chr4_1:52440558-52440577 | None:intergenic | 50.0% | |
| CTCACATAACTGTGAGGTCC+CGG | + | chr4_1:52440559-52440578 | None:intergenic | 50.0% | |
| CAGAAAAGGGTAACCCGTCA+CGG | + | chr4_1:52440780-52440799 | None:intergenic | 50.0% | |
| TGAGAATCTAGTTGGGGGAG+TGG | - | chr4_1:52440883-52440902 | Msa0554750:intron | 50.0% | |
| GGAGTGGTTGCCATTCATTC+AGG | - | chr4_1:52440899-52440918 | Msa0554750:intron | 50.0% | |
| ! | TTGCCACACGGAAGCGTAGA+GGG | + | chr4_1:52437199-52437218 | None:intergenic | 55.0% |
| ! | TTTGCCACACGGAAGCGTAG+AGG | + | chr4_1:52437200-52437219 | None:intergenic | 55.0% |
| ACCAGGCGAGAAACGAGAGA+CGG | + | chr4_1:52437262-52437281 | None:intergenic | 55.0% | |
| TCTCGTTTCTCGCCTGGTTC+AGG | - | chr4_1:52437264-52437283 | Msa0554750:three_prime_UTR | 55.0% | |
| GGCGTGAGAATGTAGAAGCC+TGG | + | chr4_1:52437628-52437647 | None:intergenic | 55.0% | |
| GTGCTGGGTTGCATAGACTG+TGG | - | chr4_1:52437857-52437876 | Msa0554750:intron | 55.0% | |
| ! | GTCCTATGTTGCACCGGTGT+AGG | - | chr4_1:52437950-52437969 | Msa0554750:intron | 55.0% |
| CCTTTCATTGGACCTCCCCA+TGG | + | chr4_1:52438596-52438615 | None:intergenic | 55.0% | |
| CCATGGGGAGGTCCAATGAA+AGG | - | chr4_1:52438593-52438612 | Msa0554750:intron | 55.0% | |
| GGGGAGGTCCAATGAAAGGT+TGG | - | chr4_1:52438597-52438616 | Msa0554750:intron | 55.0% | |
| !! | AAACAGCGGGCTGCCGAAAA+AGG | - | chr4_1:52438977-52438996 | Msa0554750:intron | 55.0% |
| ! | TGGTTCCCTTGTTTGGGTGG+AGG | - | chr4_1:52439123-52439142 | Msa0554750:CDS | 55.0% |
| ! | GGTTCCCTTGTTTGGGTGGA+GGG | - | chr4_1:52439124-52439143 | Msa0554750:CDS | 55.0% |
| !! | GGGTATTGAAACATGGCGGC+AGG | - | chr4_1:52439364-52439383 | Msa0554750:CDS | 55.0% |
| GCAACCATCTCTCCTATGCG+TGG | + | chr4_1:52439949-52439968 | None:intergenic | 55.0% | |
| CGCATAGGAGAGATGGTTGC+TGG | - | chr4_1:52439949-52439968 | Msa0554750:intron | 55.0% | |
| TAACCTGTGGGGGAAAACGC+CGG | + | chr4_1:52440011-52440030 | None:intergenic | 55.0% | |
| CTTCATCCGGGTTCAAACCC+GGG | - | chr4_1:52440538-52440557 | Msa0554750:intron | 55.0% | |
| CCAGGCGAGAAACGAGAGAC+GGG | + | chr4_1:52437261-52437280 | None:intergenic | 60.0% | |
| CTTGATGTGGCTGGTGGCAC+AGG | - | chr4_1:52438159-52438178 | Msa0554750:intron | 60.0% | |
| ! | TATCCGGCGTTTTCCCCCAC+AGG | - | chr4_1:52440005-52440024 | Msa0554750:intron | 60.0% |
| TGAGGTCCCGGGTTTGAACC+CGG | + | chr4_1:52440547-52440566 | None:intergenic | 60.0% | |
| ! | CCACACGGAAGCGTAGAGGG+CGG | + | chr4_1:52437196-52437215 | None:intergenic | 65.0% |
| CCCGTCTCTCGTTTCTCGCC+TGG | - | chr4_1:52437258-52437277 | Msa0554750:three_prime_UTR | 65.0% | |
| ! | CACGGAAGCGTAGAGGGCGG+TGG | + | chr4_1:52437193-52437212 | None:intergenic | 70.0% |
| CCGCCCTCTACGCTTCCGTG+TGG | - | chr4_1:52437193-52437212 | Msa0554750:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 52437127 | 52441168 | 52437127 | ID=Msa0554750;Name=Msa0554750 |
| chr4_1 | mRNA | 52437127 | 52441168 | 52437127 | ID=Msa0554750-mRNA-1;Parent=Msa0554750;Name=Msa0554750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155|1|1|1|0.77|0.7|10|234|290 |
| chr4_1 | exon | 52437127 | 52437462 | 52437127 | ID=Msa0554750-mRNA-1:exon:15141;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52438269 | 52438377 | 52438269 | ID=Msa0554750-mRNA-1:exon:15140;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52438859 | 52438930 | 52438859 | ID=Msa0554750-mRNA-1:exon:15139;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52439041 | 52439185 | 52439041 | ID=Msa0554750-mRNA-1:exon:15138;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52439297 | 52439455 | 52439297 | ID=Msa0554750-mRNA-1:exon:15137;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52440115 | 52440176 | 52440115 | ID=Msa0554750-mRNA-1:exon:15136;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52440408 | 52440534 | 52440408 | ID=Msa0554750-mRNA-1:exon:15135;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52440638 | 52440753 | 52440638 | ID=Msa0554750-mRNA-1:exon:15134;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52441010 | 52441102 | 52441010 | ID=Msa0554750-mRNA-1:exon:15133;Parent=Msa0554750-mRNA-1 |
| chr4_1 | exon | 52441126 | 52441168 | 52441126 | ID=Msa0554750-mRNA-1:exon:15132;Parent=Msa0554750-mRNA-1 |
| chr4_1 | five_prime_UTR | 52441126 | 52441168 | 52441126 | ID=Msa0554750-mRNA-1:five_prime_utr;Parent=Msa0554750-mRNA-1 |
| chr4_1 | five_prime_UTR | 52441010 | 52441102 | 52441010 | ID=Msa0554750-mRNA-1:five_prime_utr;Parent=Msa0554750-mRNA-1 |
| chr4_1 | five_prime_UTR | 52440735 | 52440753 | 52440735 | ID=Msa0554750-mRNA-1:five_prime_utr;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52440638 | 52440734 | 52440638 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52440408 | 52440534 | 52440408 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52440115 | 52440176 | 52440115 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52439297 | 52439455 | 52439297 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52439041 | 52439185 | 52439041 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52438859 | 52438930 | 52438859 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52438269 | 52438377 | 52438269 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | CDS | 52437361 | 52437462 | 52437361 | ID=Msa0554750-mRNA-1:cds;Parent=Msa0554750-mRNA-1 |
| chr4_1 | three_prime_UTR | 52437127 | 52437360 | 52437127 | ID=Msa0554750-mRNA-1:three_prime_utr;Parent=Msa0554750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
