Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664960 | XP_003604349.1 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664960 | sp|Q9LVC8|COQ5_ARATH | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.25e-157 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664960 | B7FL93 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0664960 | 0.823302 | 1.490283e-53 | -8.615850e-47 |
| Msa0027580 | Msa0664960 | 0.812909 | 3.344077e-51 | -8.615850e-47 |
| Msa0047980 | Msa0664960 | 0.805167 | 1.521258e-49 | -8.615850e-47 |
| Msa0057140 | Msa0664960 | 0.821333 | 4.268243e-53 | -8.615850e-47 |
| Msa0064350 | Msa0664960 | 0.811093 | 8.318652e-51 | -8.615850e-47 |
| Msa0068760 | Msa0664960 | 0.810505 | 1.115066e-50 | -8.615850e-47 |
| Msa0073670 | Msa0664960 | 0.824264 | 8.870275e-54 | -8.615850e-47 |
| Msa0075340 | Msa0664960 | 0.812036 | 5.188195e-51 | -8.615850e-47 |
| Msa0076000 | Msa0664960 | 0.800556 | 1.363707e-48 | -8.615850e-47 |
| Msa0094010 | Msa0664960 | 0.826550 | 2.550879e-54 | -8.615850e-47 |
| Msa0094950 | Msa0664960 | 0.821919 | 3.125867e-53 | -8.615850e-47 |
| Msa0095380 | Msa0664960 | 0.808404 | 3.149314e-50 | -8.615850e-47 |
| Msa0607510 | Msa0664960 | 0.802075 | 6.663038e-49 | -8.615850e-47 |
| Msa0614490 | Msa0664960 | 0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0616340 | Msa0664960 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
| Msa0623700 | Msa0664960 | 0.808457 | 3.068672e-50 | -8.615850e-47 |
| Msa0625790 | Msa0664960 | 0.809750 | 1.621396e-50 | -8.615850e-47 |
| Msa0626830 | Msa0664960 | 0.886408 | 3.509595e-72 | -8.615850e-47 |
| Msa0627910 | Msa0664960 | 0.806757 | 7.045364e-50 | -8.615850e-47 |
| Msa0639120 | Msa0664960 | 0.832083 | 1.157299e-55 | -8.615850e-47 |
| Msa0647490 | Msa0664960 | 0.826132 | 3.208228e-54 | -8.615850e-47 |
| Msa0659140 | Msa0664960 | 0.808944 | 2.414952e-50 | -8.615850e-47 |
| Msa0663900 | Msa0664960 | 0.863193 | 2.963522e-64 | -8.615850e-47 |
| Msa0664960 | Msa0669850 | 0.811757 | 5.966656e-51 | -8.615850e-47 |
| Msa0664960 | Msa0680240 | 0.820930 | 5.285863e-53 | -8.615850e-47 |
| Msa0664960 | Msa0682780 | 0.812182 | 4.822139e-51 | -8.615850e-47 |
| Msa0664960 | Msa0687630 | 0.832133 | 1.124580e-55 | -8.615850e-47 |
| Msa0664960 | Msa0690550 | 0.803082 | 4.131437e-49 | -8.615850e-47 |
| Msa0664960 | Msa0703230 | 0.813891 | 2.034245e-51 | -8.615850e-47 |
| Msa0664960 | Msa0704800 | 0.804185 | 2.439222e-49 | -8.615850e-47 |
| Msa0664960 | Msa0705040 | 0.808022 | 3.797962e-50 | -8.615850e-47 |
| Msa0664960 | Msa0705600 | 0.816672 | 4.901369e-52 | -8.615850e-47 |
| Msa0664960 | Msa0707390 | 0.808309 | 3.298986e-50 | -8.615850e-47 |
| Msa0664960 | Msa0711490 | 0.825366 | 4.874514e-54 | -8.615850e-47 |
| Msa0664960 | Msa0712310 | 0.804577 | 2.020323e-49 | -8.615850e-47 |
| Msa0664960 | Msa0735310 | 0.810429 | 1.158066e-50 | -8.615850e-47 |
| Msa0664960 | Msa0797120 | 0.814577 | 1.435660e-51 | -8.615850e-47 |
| Msa0664960 | Msa0797750 | 0.802760 | 4.814078e-49 | -8.615850e-47 |
| Msa0664960 | Msa0798720 | 0.818563 | 1.836337e-52 | -8.615850e-47 |
| Msa0664960 | Msa0814250 | 0.836399 | 9.572805e-57 | -8.615850e-47 |
| Msa0664960 | Msa0824640 | 0.816560 | 5.193553e-52 | -8.615850e-47 |
| Msa0664960 | Msa0830990 | 0.805992 | 1.021197e-49 | -8.615850e-47 |
| Msa0664960 | Msa0847080 | 0.814771 | 1.300138e-51 | -8.615850e-47 |
| Msa0664960 | Msa0864010 | 0.808850 | 2.528930e-50 | -8.615850e-47 |
| Msa0664960 | Msa0871890 | 0.804695 | 1.908959e-49 | -8.615850e-47 |
| Msa0664960 | Msa0874670 | 0.801603 | 8.328899e-49 | -8.615850e-47 |
| Msa0664960 | Msa0900630 | 0.810662 | 1.031146e-50 | -8.615850e-47 |
| Msa0664960 | Msa0903330 | 0.815336 | 9.742650e-52 | -8.615850e-47 |
| Msa0664960 | Msa0926460 | 0.812062 | 5.122363e-51 | -8.615850e-47 |
| Msa0664960 | Msa0939790 | 0.812634 | 3.841647e-51 | -8.615850e-47 |
| Msa0664960 | Msa0940830 | 0.811709 | 6.112762e-51 | -8.615850e-47 |
| Msa0664960 | Msa0960830 | 0.800963 | 1.126215e-48 | -8.615850e-47 |
| Msa0664960 | Msa0967370 | 0.828637 | 8.048056e-55 | -8.615850e-47 |
| Msa0664960 | Msa0970520 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0664960 | Msa0974810 | 0.830173 | 3.409617e-55 | -8.615850e-47 |
| Msa0664960 | Msa0976330 | 0.837130 | 6.233193e-57 | -8.615850e-47 |
| Msa0664960 | Msa0980940 | 0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa0664960 | Msa1004420 | 0.801747 | 7.783153e-49 | -8.615850e-47 |
| Msa0664960 | Msa1008060 | -0.810798 | 9.635489e-51 | -8.615850e-47 |
| Msa0664960 | Msa1030930 | 0.830641 | 2.619231e-55 | -8.615850e-47 |
| Msa0664960 | Msa1070050 | 0.828962 | 6.714529e-55 | -8.615850e-47 |
| Msa0664960 | Msa1073400 | 0.827894 | 1.215773e-54 | -8.615850e-47 |
| Msa0664960 | Msa1082700 | 0.823405 | 1.409735e-53 | -8.615850e-47 |
| Msa0664960 | Msa1083210 | 0.808908 | 2.458160e-50 | -8.615850e-47 |
| Msa0664960 | Msa1083880 | 0.810609 | 1.058782e-50 | -8.615850e-47 |
| Msa0664960 | Msa1089840 | 0.822163 | 2.743235e-53 | -8.615850e-47 |
| Msa0664960 | Msa1109570 | 0.808022 | 3.797962e-50 | -8.615850e-47 |
| Msa0664960 | Msa1111700 | 0.806500 | 7.981069e-50 | -8.615850e-47 |
| Msa0664960 | Msa1126770 | 0.826292 | 2.939640e-54 | -8.615850e-47 |
| Msa0664960 | Msa1127830 | 0.822570 | 2.206978e-53 | -8.615850e-47 |
| Msa0664960 | Msa1134110 | 0.801337 | 9.443033e-49 | -8.615850e-47 |
| Msa0664960 | Msa1160360 | 0.821983 | 3.020007e-53 | -8.615850e-47 |
| Msa0664960 | Msa1166010 | 0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0664960 | Msa1166870 | 0.801295 | 9.631011e-49 | -8.615850e-47 |
| Msa0664960 | Msa1171770 | -0.802342 | 5.871211e-49 | -8.615850e-47 |
| Msa0664960 | Msa1183660 | 0.822559 | 2.220412e-53 | -8.615850e-47 |
| Msa0664960 | Msa1184370 | 0.826127 | 3.216632e-54 | -8.615850e-47 |
| Msa0664960 | Msa1186800 | 0.805091 | 1.577662e-49 | -8.615850e-47 |
| Msa0664960 | Msa1201830 | 0.813178 | 2.918998e-51 | -8.615850e-47 |
| Msa0664960 | Msa1227690 | 0.836344 | 9.889400e-57 | -8.615850e-47 |
| Msa0664960 | Msa1249870 | 0.805117 | 1.558288e-49 | -8.615850e-47 |
| Msa0664960 | Msa1252740 | 0.805417 | 1.348408e-49 | -8.615850e-47 |
| Msa0664960 | Msa1254710 | 0.804310 | 2.297311e-49 | -8.615850e-47 |
| Msa0664960 | Msa1269300 | 0.818142 | 2.287213e-52 | -8.615850e-47 |
| Msa0664960 | Msa1294840 | 0.828283 | 9.796817e-55 | -8.615850e-47 |
| Msa0664960 | Msa1306990 | 0.800610 | 1.329238e-48 | -8.615850e-47 |
| Msa0664960 | Msa1307950 | 0.820481 | 6.705717e-53 | -8.615850e-47 |
| Msa0664960 | Msa1310690 | 0.830951 | 2.199326e-55 | -8.615850e-47 |
| Msa0664960 | Msa1335940 | 0.807799 | 4.236004e-50 | -8.615850e-47 |
| Msa0664960 | Msa1340020 | 0.805672 | 1.192151e-49 | -8.615850e-47 |
| Msa0664960 | Msa1341070 | 0.811910 | 5.526598e-51 | -8.615850e-47 |
| Msa0664960 | Msa1344850 | 0.826372 | 2.812296e-54 | -8.615850e-47 |
| Msa0664960 | Msa1345450 | 0.827807 | 1.275487e-54 | -8.615850e-47 |
| Msa0664960 | Msa1365150 | 0.851687 | 7.545055e-61 | -8.615850e-47 |
| Msa0664960 | Msa1367880 | 0.841852 | 3.695143e-58 | -8.615850e-47 |
| Msa0664960 | Msa1370860 | 0.804370 | 2.232013e-49 | -8.615850e-47 |
| Msa0664960 | Msa1372310 | 0.815182 | 1.053760e-51 | -8.615850e-47 |
| Msa0664960 | Msa1397810 | 0.807716 | 4.411960e-50 | -8.615850e-47 |
| Msa0664960 | Msa1397940 | 0.827768 | 1.303812e-54 | -8.615850e-47 |
| Msa0664960 | Msa1404190 | 0.836865 | 7.283346e-57 | -8.615850e-47 |
| Msa0664960 | Msa1435750 | 0.808421 | 3.122300e-50 | -8.615850e-47 |
| Msa0664960 | Msa1438640 | 0.851730 | 7.335339e-61 | -8.615850e-47 |
| Msa0664960 | Msa1442850 | 0.817050 | 4.031001e-52 | -8.615850e-47 |
| Msa0664960 | Msa1460470 | 0.800043 | 1.734050e-48 | -8.615850e-47 |
| Msa0664960 | Msa1461490 | 0.816508 | 5.335063e-52 | -8.615850e-47 |
| Msa0664960 | Msa1465080 | 0.821603 | 3.698401e-53 | -8.615850e-47 |
| Msa0137040 | Msa0664960 | 0.823579 | 1.283729e-53 | -8.615850e-47 |
| Msa0155430 | Msa0664960 | 0.821060 | 4.934577e-53 | -8.615850e-47 |
| Msa0165950 | Msa0664960 | 0.805221 | 1.481876e-49 | -8.615850e-47 |
| Msa0173820 | Msa0664960 | 0.801918 | 7.175918e-49 | -8.615850e-47 |
| Msa0174770 | Msa0664960 | 0.815938 | 7.153059e-52 | -8.615850e-47 |
| Msa0182280 | Msa0664960 | 0.802377 | 5.774870e-49 | -8.615850e-47 |
| Msa0183460 | Msa0664960 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0186890 | Msa0664960 | 0.810513 | 1.110420e-50 | -8.615850e-47 |
| Msa0199690 | Msa0664960 | 0.835545 | 1.576269e-56 | -8.615850e-47 |
| Msa0231880 | Msa0664960 | 0.805988 | 1.023068e-49 | -8.615850e-47 |
| Msa0236270 | Msa0664960 | 0.831948 | 1.249519e-55 | -8.615850e-47 |
| Msa0236980 | Msa0664960 | 0.820772 | 5.748555e-53 | -8.615850e-47 |
| Msa0372670 | Msa0664960 | 0.803449 | 3.467267e-49 | -8.615850e-47 |
| Msa0376690 | Msa0664960 | 0.816260 | 6.059954e-52 | -8.615850e-47 |
| Msa0394400 | Msa0664960 | 0.835748 | 1.400321e-56 | -8.615850e-47 |
| Msa0402330 | Msa0664960 | 0.836026 | 1.190693e-56 | -8.615850e-47 |
| Msa0403190 | Msa0664960 | 0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0413450 | Msa0664960 | 0.826710 | 2.336621e-54 | -8.615850e-47 |
| Msa0431770 | Msa0664960 | 0.816245 | 6.108207e-52 | -8.615850e-47 |
| Msa0449820 | Msa0664960 | 0.808952 | 2.405347e-50 | -8.615850e-47 |
| Msa0460930 | Msa0664960 | 0.801224 | 9.958043e-49 | -8.615850e-47 |
| Msa0462990 | Msa0664960 | 0.802357 | 5.829663e-49 | -8.615850e-47 |
| Msa0463500 | Msa0664960 | 0.827031 | 1.957722e-54 | -8.615850e-47 |
| Msa0465960 | Msa0664960 | 0.805629 | 1.217227e-49 | -8.615850e-47 |
| Msa0469910 | Msa0664960 | -0.800085 | 1.700342e-48 | -8.615850e-47 |
| Msa0471590 | Msa0664960 | 0.820105 | 8.174789e-53 | -8.615850e-47 |
| Msa0242230 | Msa0664960 | 0.803622 | 3.193212e-49 | -8.615850e-47 |
| Msa0242680 | Msa0664960 | 0.823350 | 1.452405e-53 | -8.615850e-47 |
| Msa0259560 | Msa0664960 | 0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa0260240 | Msa0664960 | 0.817872 | 2.631603e-52 | -8.615850e-47 |
| Msa0260280 | Msa0664960 | 0.821578 | 3.748304e-53 | -8.615850e-47 |
| Msa0280430 | Msa0664960 | 0.834389 | 3.083388e-56 | -8.615850e-47 |
| Msa0291520 | Msa0664960 | 0.841633 | 4.220576e-58 | -8.615850e-47 |
| Msa0304260 | Msa0664960 | 0.817833 | 2.685566e-52 | -8.615850e-47 |
| Msa0304300 | Msa0664960 | 0.807982 | 3.873715e-50 | -8.615850e-47 |
| Msa0310410 | Msa0664960 | 0.834172 | 3.494323e-56 | -8.615850e-47 |
| Msa0328210 | Msa0664960 | 0.815793 | 7.704462e-52 | -8.615850e-47 |
| Msa0337510 | Msa0664960 | 0.819393 | 1.189357e-52 | -8.615850e-47 |
| Msa0337650 | Msa0664960 | 0.811212 | 7.838178e-51 | -8.615850e-47 |
| Msa0347680 | Msa0664960 | 0.805268 | 1.448866e-49 | -8.615850e-47 |
| Msa0355270 | Msa0664960 | 0.834676 | 2.611450e-56 | -8.615850e-47 |
| Msa0490750 | Msa0664960 | 0.818544 | 1.854797e-52 | -8.615850e-47 |
| Msa0493920 | Msa0664960 | 0.801533 | 8.608158e-49 | -8.615850e-47 |
| Msa0505150 | Msa0664960 | 0.834884 | 2.315310e-56 | -8.615850e-47 |
| Msa0506940 | Msa0664960 | 0.805975 | 1.029559e-49 | -8.615850e-47 |
| Msa0513440 | Msa0664960 | 0.838444 | 2.864752e-57 | -8.615850e-47 |
| Msa0525340 | Msa0664960 | 0.814019 | 1.906965e-51 | -8.615850e-47 |
| Msa0541860 | Msa0664960 | 0.810158 | 1.324935e-50 | -8.615850e-47 |
| Msa0542160 | Msa0664960 | 0.800157 | 1.644137e-48 | -8.615850e-47 |
| Msa0546360 | Msa0664960 | 0.800566 | 1.357337e-48 | -8.615850e-47 |
| Msa0552810 | Msa0664960 | 0.815419 | 9.333604e-52 | -8.615850e-47 |
| Msa0554750 | Msa0664960 | 0.872767 | 2.468873e-67 | -8.615850e-47 |
| Msa0560470 | Msa0664960 | 0.834083 | 3.679333e-56 | -8.615850e-47 |
| Msa0581070 | Msa0664960 | 0.836700 | 8.026173e-57 | -8.615850e-47 |
| Msa0590650 | Msa0664960 | 0.803444 | 3.475924e-49 | -8.615850e-47 |
| Msa0590680 | Msa0664960 | 0.811381 | 7.203469e-51 | -8.615850e-47 |
| Msa0591060 | Msa0664960 | 0.806199 | 9.235951e-50 | -8.615850e-47 |
| Msa0591770 | Msa0664960 | 0.806979 | 6.323815e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664960 | MtrunA17_Chr4g0003041 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664960 | AT5G57300.3 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.30e-158 | 442 |
| Msa0664960 | AT5G57300.1 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.30e-158 | 442 |
| Msa0664960 | AT5G57300.4 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.30e-158 | 442 |
| Msa0664960 | AT5G57300.2 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.30e-158 | 442 |
| Msa0664960 | AT1G23360.1 | 29.119 | 261 | 154 | 7 | 31 | 280 | 12 | 252 | 3.04e-22 | 93.6 |
Find 98 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAGATTGTTCTTCTAAT+TGG | 0.136627 | 4_4:-4256257 | Msa0664960:three_prime_UTR |
| AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4_4:-4259800 | Msa0664960:exon |
| GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4_4:-4256455 | Msa0664960:CDS |
| GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4_4:+4256486 | None:intergenic |
| TTGCAAACACCTAATATTAA+TGG | 0.258533 | 4_4:+4256287 | None:intergenic |
| CAGCATTATGTTCCACTTCC+AGG | 0.259306 | 4_4:-4259741 | Msa0664960:CDS |
| TCTCGTTTCTCGCCTGGTTC+AGG | 0.292738 | 4_4:-4260517 | Msa0664960:intron |
| CATGATTTATTATATAATTA+CGG | 0.292739 | 4_4:+4256398 | None:intergenic |
| GATGGTTACACTATTGCATT+TGG | 0.299423 | 4_4:-4258171 | Msa0664960:CDS |
| GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4_4:-4258239 | Msa0664960:CDS |
| AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4_4:-4258378 | Msa0664960:intron |
| TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4_4:+4258399 | None:intergenic |
| ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4_4:-4259799 | Msa0664960:exon |
| TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4_4:+4258400 | None:intergenic |
| ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4_4:+4257935 | None:intergenic |
| TCCAATTAGAAGAACAATCT+TGG | 0.346971 | 4_4:+4256256 | None:intergenic |
| AAGTTTATTCCCCAACCTTT+TGG | 0.347857 | 4_4:+4259768 | None:intergenic |
| CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4_4:-4259189 | Msa0664960:intron |
| CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4_4:-4259712 | Msa0664960:intron |
| ATGATTTATTATATAATTAC+GGG | 0.363596 | 4_4:+4256399 | None:intergenic |
| TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4_4:+4259699 | None:intergenic |
| ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4_4:-4258164 | Msa0664960:CDS |
| AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4_4:-4258238 | Msa0664960:CDS |
| CCCGTCTCTCGTTTCTCGCC+TGG | 0.375748 | 4_4:-4260523 | Msa0664960:five_prime_UTR |
| GGAATAGTCACCAAAAGGTT+GGG | 0.387755 | 4_4:-4259778 | Msa0664960:CDS |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4_4:-4260658 | None:intergenic |
| CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4_4:-4257406 | Msa0664960:CDS |
| GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4_4:-4256479 | Msa0664960:CDS |
| AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4_4:+4259210 | None:intergenic |
| AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4_4:+4259509 | None:intergenic |
| TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4_4:-4258252 | Msa0664960:intron |
| TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4_4:-4256478 | Msa0664960:CDS |
| AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4_4:-4258122 | Msa0664960:intron |
| AACCATCCATTGAATCATCT+TGG | 0.445596 | 4_4:+4258187 | None:intergenic |
| ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4_4:+4259204 | None:intergenic |
| ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4_4:-4259507 | Msa0664960:CDS |
| CCAATTAGAAGAACAATCTT+GGG | 0.461393 | 4_4:+4256257 | None:intergenic |
| GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4_4:-4258231 | Msa0664960:CDS |
| AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4_4:-4257366 | Msa0664960:CDS |
| GAGTGTATGGTCTCAGCTAA+TGG | 0.468461 | 4_4:+4260622 | None:intergenic |
| GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4_4:+4257960 | None:intergenic |
| ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4_4:-4258170 | Msa0664960:CDS |
| ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4_4:+4257372 | None:intergenic |
| TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4_4:-4259482 | Msa0664960:intron |
| GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4_4:-4256512 | Msa0664960:CDS |
| TAGATACGAGTTTGTGAGAA+TGG | 0.480268 | 4_4:-4256325 | Msa0664960:three_prime_UTR |
| AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4_4:-4258235 | Msa0664960:CDS |
| GAGTTTCCAAGATGATTCAA+TGG | 0.492872 | 4_4:-4258193 | Msa0664960:CDS |
| GGGAATAGTCACCAAAAGGT+TGG | 0.494727 | 4_4:-4259779 | Msa0664960:CDS |
| ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4_4:-4259580 | Msa0664960:CDS |
| TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4_4:-4258189 | Msa0664960:CDS |
| TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4_4:-4258232 | Msa0664960:CDS |
| GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4_4:-4256454 | Msa0664960:CDS |
| CCAGGCGAGAAACGAGAGAC+GGG | 0.503692 | 4_4:+4260523 | None:intergenic |
| CTCACAAACTCGTATCTACT+AGG | 0.505688 | 4_4:+4256330 | None:intergenic |
| AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4_4:-4258402 | Msa0664960:CDS |
| CTTTGGGAATAGTCACCAAA+AGG | 0.511333 | 4_4:-4259783 | Msa0664960:CDS |
| GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4_4:-4259567 | Msa0664960:CDS |
| CACGGAAGCGTAGAGGGCGG+TGG | 0.520965 | 4_4:+4260591 | None:intergenic |
| GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4_4:+4259723 | None:intergenic |
| AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4_4:+4259729 | None:intergenic |
| CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4_4:+4258226 | None:intergenic |
| CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4_4:-4259571 | Msa0664960:CDS |
| GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4_4:-4257991 | Msa0664960:CDS |
| TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4_4:-4257421 | Msa0664960:CDS |
| CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4_4:-4256511 | Msa0664960:CDS |
| TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4_4:-4258485 | Msa0664960:CDS |
| ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4_4:-4259198 | Msa0664960:CDS |
| CTGGAAGTGGAACATAATGC+TGG | 0.574988 | 4_4:+4259742 | None:intergenic |
| AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4_4:-4256477 | Msa0664960:CDS |
| TTGCCACACGGAAGCGTAGA+GGG | 0.577744 | 4_4:+4260585 | None:intergenic |
| TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4_4:-4257413 | Msa0664960:CDS |
| GAGAGAAGAAGAGAGAAGAG+AGG | 0.582470 | 4_4:+4260545 | None:intergenic |
| CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4_4:+4257966 | None:intergenic |
| GAATAGTCACCAAAAGGTTG+GGG | 0.588614 | 4_4:-4259777 | Msa0664960:CDS |
| AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4_4:-4258474 | Msa0664960:CDS |
| GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4_4:-4258391 | Msa0664960:CDS |
| TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4_4:-4257998 | Msa0664960:intron |
| TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4_4:-4259506 | Msa0664960:CDS |
| AAGCAATTCTTACCTGAACC+AGG | 0.613905 | 4_4:+4260505 | None:intergenic |
| TTTGCCACACGGAAGCGTAG+AGG | 0.616595 | 4_4:+4260584 | None:intergenic |
| TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4_4:+4257948 | None:intergenic |
| TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4_4:-4259202 | Msa0664960:CDS |
| GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4_4:+4257409 | None:intergenic |
| ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4_4:-4258486 | Msa0664960:CDS |
| ACCAGGCGAGAAACGAGAGA+CGG | 0.632914 | 4_4:+4260522 | None:intergenic |
| AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4_4:+4257337 | None:intergenic |
| GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4_4:-4256476 | Msa0664960:CDS |
| TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4_4:+4259221 | None:intergenic |
| TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4_4:-4258392 | Msa0664960:CDS |
| GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4_4:+4257336 | None:intergenic |
| ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4_4:+4258227 | None:intergenic |
| AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4_4:-4259195 | Msa0664960:CDS |
| CCGCCCTCTACGCTTCCGTG+TGG | 0.691726 | 4_4:-4260588 | Msa0664960:five_prime_UTR |
| CCACACGGAAGCGTAGAGGG+CGG | 0.697309 | 4_4:+4260588 | None:intergenic |
| AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4_4:-4257995 | Msa0664960:intron |
| ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4_4:+4259702 | None:intergenic |
| GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4_4:-4259491 | Msa0664960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTAACTAAAAAAA+TGG | + | chr4_4:4257194-4257213 | None:intergenic | 10.0% |
| !! | GTAATAATTTAAAAAAGAAA+TGG | + | chr4_4:4257530-4257549 | None:intergenic | 10.0% |
| !! | AATTAAATAATGAATAACAT+AGG | + | chr4_4:4259752-4259771 | None:intergenic | 10.0% |
| !!! | ACTAGTTTTTTTTTTTTTTT+AGG | + | chr4_4:4260122-4260141 | None:intergenic | 10.0% |
| !! | ATGATTTATTATATAATTAC+GGG | + | chr4_4:4260466-4260485 | None:intergenic | 10.0% |
| !! | CATGATTTATTATATAATTA+CGG | + | chr4_4:4260467-4260486 | None:intergenic | 10.0% |
| !!! | TTATTTTTTCCATTAATATT+AGG | - | chr4_4:4260566-4260585 | Msa0664960:five_prime_UTR | 10.0% |
| !! | TTACTAAAATATTTGGTTAA+AGG | + | chr4_4:4256738-4256757 | None:intergenic | 15.0% |
| !!! | TTAACCAAATATTTTAGTAA+TGG | - | chr4_4:4256738-4256757 | Msa0664960:intron | 15.0% |
| !!! | ACATTTTTCCATAAAAAATT+AGG | - | chr4_4:4257253-4257272 | Msa0664960:intron | 15.0% |
| !! | AATTATTTATAGAATGGAAT+AGG | + | chr4_4:4257414-4257433 | None:intergenic | 15.0% |
| !! | TTAGAAACTATAAAGTTTAA+AGG | + | chr4_4:4257718-4257737 | None:intergenic | 15.0% |
| !! | TATAATCATTAATAAGCATA+AGG | - | chr4_4:4258304-4258323 | Msa0664960:intron | 15.0% |
| !!! | GATTTTTTATTGATTTTACA+GGG | - | chr4_4:4258326-4258345 | Msa0664960:intron | 15.0% |
| !!! | ATTTTTTATTGATTTTACAG+GGG | - | chr4_4:4258327-4258346 | Msa0664960:intron | 15.0% |
| !! | TTAATTTATCTTCATTTGTT+AGG | - | chr4_4:4258565-4258584 | Msa0664960:intron | 15.0% |
| !!! | TTTTTTTCATTTCTTTAACA+GGG | - | chr4_4:4258851-4258870 | Msa0664960:intron | 15.0% |
| !! | TACAAGGTATATAAATTAAA+GGG | + | chr4_4:4259079-4259098 | None:intergenic | 15.0% |
| !! | TTACAAGGTATATAAATTAA+AGG | + | chr4_4:4259080-4259099 | None:intergenic | 15.0% |
| !! | CTTTCCATTACTAAAATATT+TGG | + | chr4_4:4256745-4256764 | None:intergenic | 20.0% |
| !!! | CAAATATTTTAGTAATGGAA+AGG | - | chr4_4:4256743-4256762 | Msa0664960:intron | 20.0% |
| !!! | TTTCATTATTTCTGACTTAT+TGG | - | chr4_4:4257008-4257027 | Msa0664960:intron | 20.0% |
| !!! | TTCATTATTTCTGACTTATT+GGG | - | chr4_4:4257009-4257028 | Msa0664960:intron | 20.0% |
| !!! | TGAGTTTTTCTTTGTTATTT+AGG | - | chr4_4:4257034-4257053 | Msa0664960:intron | 20.0% |
| !! | AAACAAATAATATTAACCTG+TGG | - | chr4_4:4257206-4257225 | Msa0664960:intron | 20.0% |
| !!! | GTTTGAAACCTAATTTTTTA+TGG | + | chr4_4:4257264-4257283 | None:intergenic | 20.0% |
| !!! | ATATAAAATGTTACTTTGAG+TGG | - | chr4_4:4257741-4257760 | Msa0664960:intron | 20.0% |
| !! | CATGAGATATCAATAAATAA+GGG | - | chr4_4:4257821-4257840 | Msa0664960:intron | 20.0% |
| !!! | GGATTTTTTATTGATTTTAC+AGG | - | chr4_4:4258325-4258344 | Msa0664960:intron | 20.0% |
| !!! | GTTTTTATGCTTATTTTGAT+AGG | - | chr4_4:4258595-4258614 | Msa0664960:intron | 20.0% |
| !!! | GTTTTTTTCATTTCTTTAAC+AGG | - | chr4_4:4258850-4258869 | Msa0664960:intron | 20.0% |
| !!! | TCGATTATGTTTTATTTACA+AGG | + | chr4_4:4259095-4259114 | None:intergenic | 20.0% |
| !! | AAACATAATCGAAGTTTATA+TGG | - | chr4_4:4259103-4259122 | Msa0664960:intron | 20.0% |
| !! | AGTTATATTCTATTCAAGTA+TGG | + | chr4_4:4259378-4259397 | None:intergenic | 20.0% |
| !! | TGACTAATGTATTATATTGA+TGG | - | chr4_4:4260311-4260330 | Msa0664960:intron | 20.0% |
| ! | TTTGCAAAGAAAAGAACATA+AGG | + | chr4_4:4256430-4256449 | None:intergenic | 25.0% |
| ! | TGACATACACTTTAGATAAT+TGG | + | chr4_4:4256696-4256715 | None:intergenic | 25.0% |
| !!! | GTTTTGAACAATCAAATTCA+TGG | - | chr4_4:4257056-4257075 | Msa0664960:intron | 25.0% |
| ! | GCATGAGATATCAATAAATA+AGG | - | chr4_4:4257820-4257839 | Msa0664960:intron | 25.0% |
| ! | ACCTTATATAAACAGAAACT+TGG | + | chr4_4:4257953-4257972 | None:intergenic | 25.0% |
| ! | ATAAAAGAAGTGATGAAGTA+TGG | - | chr4_4:4258024-4258043 | Msa0664960:intron | 25.0% |
| ! | TCTCCATATTAATGCAATAT+TGG | + | chr4_4:4258246-4258265 | None:intergenic | 25.0% |
| !! | ACATTCTCATTTACCTTTTT+CGG | + | chr4_4:4258500-4258519 | None:intergenic | 25.0% |
| !!! | ATGCTTATTTTGATAGGTTA+TGG | - | chr4_4:4258601-4258620 | Msa0664960:intron | 25.0% |
| ! | TAAATATAGGAAGACTAACA+TGG | + | chr4_4:4258917-4258936 | None:intergenic | 25.0% |
| ! | ACTCACAGTTCTTTAAATAT+AGG | + | chr4_4:4258930-4258949 | None:intergenic | 25.0% |
| !! | TACGTTCATACTTCAAATTT+TGG | - | chr4_4:4259146-4259165 | Msa0664960:intron | 25.0% |
| !! | TTTTGGACAAAAGAATTAAG+AGG | - | chr4_4:4259163-4259182 | Msa0664960:intron | 25.0% |
| ! | AAACAACAGATAATGTGTTT+CGG | - | chr4_4:4259187-4259206 | Msa0664960:intron | 25.0% |
| !! | GGATATATCTTTGAAAATTG+AGG | - | chr4_4:4259289-4259308 | Msa0664960:intron | 25.0% |
| ! | TTTGAAAATTGAGGAATTCT+CGG | - | chr4_4:4259298-4259317 | Msa0664960:intron | 25.0% |
| !!! | TCATTTTAGCTTGAAAGAAA+AGG | - | chr4_4:4259575-4259594 | Msa0664960:CDS | 25.0% |
| !!! | CATTTTAGCTTGAAAGAAAA+GGG | - | chr4_4:4259576-4259595 | Msa0664960:CDS | 25.0% |
| ! | ACTAAAGCATATAAAGATGT+TGG | + | chr4_4:4259675-4259694 | None:intergenic | 25.0% |
| ! | ATAATGAATAACATAGGAGA+TGG | + | chr4_4:4259746-4259765 | None:intergenic | 25.0% |
| !! | AGATCAGATATACTCATTTT+GGG | - | chr4_4:4259908-4259927 | Msa0664960:intron | 25.0% |
| !!! | ACTGTGTAGTTTTTTTATGT+TGG | - | chr4_4:4260186-4260205 | Msa0664960:intron | 25.0% |
| ! | ACATTAGTCAATACAGAAAA+GGG | + | chr4_4:4260301-4260320 | None:intergenic | 25.0% |
| ! | TACATTAGTCAATACAGAAA+AGG | + | chr4_4:4260302-4260321 | None:intergenic | 25.0% |
| ! | TTGCAAACACCTAATATTAA+TGG | + | chr4_4:4260578-4260597 | None:intergenic | 25.0% |
| ! | TCTTTTCTTTGCAAATTGCT+CGG | - | chr4_4:4256435-4256454 | Msa0664960:exon | 30.0% |
| TCAAAATGTCATAAGCTGAA+TGG | - | chr4_4:4256641-4256660 | Msa0664960:intron | 30.0% | |
| ! | ATATCTATTTCTCTCTCCAA+CGG | - | chr4_4:4256821-4256840 | Msa0664960:intron | 30.0% |
| !! | TATTTTTCAGAGAGTTTGGA+GGG | - | chr4_4:4256864-4256883 | Msa0664960:intron | 30.0% |
| AACAATCAAATTCATGGCTT+TGG | - | chr4_4:4257062-4257081 | Msa0664960:intron | 30.0% | |
| ACAATCAAATTCATGGCTTT+GGG | - | chr4_4:4257063-4257082 | Msa0664960:intron | 30.0% | |
| ACATGTAAACGAAGAAGAAA+AGG | - | chr4_4:4257282-4257301 | Msa0664960:intron | 30.0% | |
| AGCACTCATTAAATCATTCA+TGG | + | chr4_4:4257356-4257375 | None:intergenic | 30.0% | |
| ATGAATGATTTAATGAGTGC+TGG | - | chr4_4:4257355-4257374 | Msa0664960:CDS | 30.0% | |
| TGAATGATTTAATGAGTGCT+GGG | - | chr4_4:4257356-4257375 | Msa0664960:CDS | 30.0% | |
| CGACATTAATGCGTAAAAAT+CGG | + | chr4_4:4257552-4257571 | None:intergenic | 30.0% | |
| AATCCTATACAGAACTAACA+CGG | + | chr4_4:4257578-4257597 | None:intergenic | 30.0% | |
| AAGTTTAAAGGTGAGTATGA+AGG | + | chr4_4:4257706-4257725 | None:intergenic | 30.0% | |
| TGTAGTAGCAGTTAGATAAA+AGG | - | chr4_4:4257779-4257798 | Msa0664960:intron | 30.0% | |
| TGTTACAGATAATGTGAGAT+TGG | - | chr4_4:4257921-4257940 | Msa0664960:intron | 30.0% | |
| GCCAAGTTTCTGTTTATATA+AGG | - | chr4_4:4257949-4257968 | Msa0664960:CDS | 30.0% | |
| CTTGAAAAATATGTAGTGTG+TGG | - | chr4_4:4258001-4258020 | Msa0664960:intron | 30.0% | |
| TCGCCAATATTGCATTAATA+TGG | - | chr4_4:4258240-4258259 | Msa0664960:CDS | 30.0% | |
| ATTAATATGGAGAGACTTGA+AGG | - | chr4_4:4258253-4258272 | Msa0664960:intron | 30.0% | |
| TTAATATGGAGAGACTTGAA+GGG | - | chr4_4:4258254-4258273 | Msa0664960:intron | 30.0% | |
| ATGGTTACACTATTGCATTT+GGG | - | chr4_4:4258692-4258711 | Msa0664960:intron | 30.0% | |
| !! | TTTAACAGGGTATTGAAACA+TGG | - | chr4_4:4258864-4258883 | Msa0664960:intron | 30.0% |
| TTCTCAAGAATGATGTGAAT+TGG | - | chr4_4:4258965-4258984 | Msa0664960:intron | 30.0% | |
| TTGAAGTATGAACGTAAACA+AGG | + | chr4_4:4259142-4259161 | None:intergenic | 30.0% | |
| AACAACAGATAATGTGTTTC+GGG | - | chr4_4:4259188-4259207 | Msa0664960:intron | 30.0% | |
| TTCTATTCAAGTATGGAAGA+AGG | + | chr4_4:4259371-4259390 | None:intergenic | 30.0% | |
| TAAGTACAGCTATCAATAGA+AGG | + | chr4_4:4259547-4259566 | None:intergenic | 30.0% | |
| TAATTGAAACCCAAGAAAAG+AGG | - | chr4_4:4259767-4259786 | Msa0664960:CDS | 30.0% | |
| ! | ATACAAAAGCCTCTTTTCTT+GGG | + | chr4_4:4259779-4259798 | None:intergenic | 30.0% |
| ! | TATACAAAAGCCTCTTTTCT+TGG | + | chr4_4:4259780-4259799 | None:intergenic | 30.0% |
| ! | GAGATCAGATATACTCATTT+TGG | - | chr4_4:4259907-4259926 | Msa0664960:intron | 30.0% |
| TGTAATTGACACGATAAAGT+GGG | + | chr4_4:4259934-4259953 | None:intergenic | 30.0% | |
| TTGTAATTGACACGATAAAG+TGG | + | chr4_4:4259935-4259954 | None:intergenic | 30.0% | |
| GAACATGTAAAAACTAGTCA+CGG | - | chr4_4:4259972-4259991 | Msa0664960:intron | 30.0% | |
| !! | GTATTATATTGATGGATTGC+AGG | - | chr4_4:4260319-4260338 | Msa0664960:intron | 30.0% |
| TAGAGTATGAGAATCTAGTT+GGG | - | chr4_4:4260384-4260403 | Msa0664960:intron | 30.0% | |
| ! | GATTTTTATCCCTGAATGAA+TGG | + | chr4_4:4260420-4260439 | None:intergenic | 30.0% |
| CCAATTAGAAGAACAATCTT+GGG | + | chr4_4:4260608-4260627 | None:intergenic | 30.0% | |
| TCCAATTAGAAGAACAATCT+TGG | + | chr4_4:4260609-4260628 | None:intergenic | 30.0% | |
| !!! | CATTAGTTTTGCTTGGTTTG+TGG | - | chr4_4:4256461-4256480 | Msa0664960:CDS | 35.0% |
| AAATGTCATAAGCTGAATGG+AGG | - | chr4_4:4256644-4256663 | Msa0664960:intron | 35.0% | |
| AATGTCATAAGCTGAATGGA+GGG | - | chr4_4:4256645-4256664 | Msa0664960:intron | 35.0% | |
| !! | CAGGTATTTTTCAGAGAGTT+TGG | - | chr4_4:4256860-4256879 | Msa0664960:intron | 35.0% |
| !! | GTATTTTTCAGAGAGTTTGG+AGG | - | chr4_4:4256863-4256882 | Msa0664960:intron | 35.0% |
| ! | AAGTTTATTCCCCAACCTTT+TGG | + | chr4_4:4257097-4257116 | None:intergenic | 35.0% |
| TGAATGTAACTAACCGAAAC+TGG | + | chr4_4:4257166-4257185 | None:intergenic | 35.0% | |
| TAATTTCTGCTCAACTTCTC+AGG | - | chr4_4:4257611-4257630 | Msa0664960:intron | 35.0% | |
| TCAGAGGGATATAGTTCAAA+AGG | - | chr4_4:4258052-4258071 | Msa0664960:intron | 35.0% | |
| ATGCTGTAAAATTCTCACCA+TGG | - | chr4_4:4258083-4258102 | Msa0664960:intron | 35.0% | |
| TGCTGTAAAATTCTCACCAT+GGG | - | chr4_4:4258084-4258103 | Msa0664960:intron | 35.0% | |
| TACAGCTATACCCTATGAAA+GGG | + | chr4_4:4258190-4258209 | None:intergenic | 35.0% | |
| ATACAGCTATACCCTATGAA+AGG | + | chr4_4:4258191-4258210 | None:intergenic | 35.0% | |
| !!! | GGATGTTGCTTTTAGAATCT+TGG | - | chr4_4:4258348-4258367 | Msa0664960:intron | 35.0% |
| ATAAACAGAGTTAAGCAGAG+AGG | - | chr4_4:4258376-4258395 | Msa0664960:intron | 35.0% | |
| TAAACAGAGTTAAGCAGAGA+GGG | - | chr4_4:4258377-4258396 | Msa0664960:intron | 35.0% | |
| AACCCAAACATGTTGAATGT+TGG | - | chr4_4:4258460-4258479 | Msa0664960:CDS | 35.0% | |
| TGCCAACATTCAACATGTTT+GGG | + | chr4_4:4258465-4258484 | None:intergenic | 35.0% | |
| TTGCCAACATTCAACATGTT+TGG | + | chr4_4:4258466-4258485 | None:intergenic | 35.0% | |
| TTGATAGGTTATGGAGAAGA+TGG | - | chr4_4:4258610-4258629 | Msa0664960:intron | 35.0% | |
| GAGTTTCCAAGATGATTCAA+TGG | - | chr4_4:4258669-4258688 | Msa0664960:intron | 35.0% | |
| TTCCAAGATGATTCAATGGA+TGG | - | chr4_4:4258673-4258692 | Msa0664960:intron | 35.0% | |
| AACCATCCATTGAATCATCT+TGG | + | chr4_4:4258678-4258697 | None:intergenic | 35.0% | |
| GATGGTTACACTATTGCATT+TGG | - | chr4_4:4258691-4258710 | Msa0664960:intron | 35.0% | |
| ! | ACACTATTGCATTTGGGATA+AGG | - | chr4_4:4258698-4258717 | Msa0664960:intron | 35.0% |
| AAGTTCTTAGTGAAGCTCAT+AGG | - | chr4_4:4258740-4258759 | Msa0664960:intron | 35.0% | |
| ! | GAATGATGTGAATTGGTGTT+TGG | - | chr4_4:4258972-4258991 | Msa0664960:intron | 35.0% |
| ACAACAGATAATGTGTTTCG+GGG | - | chr4_4:4259189-4259208 | Msa0664960:intron | 35.0% | |
| !! | TTGCTTATCGCTTGTTTCTA+AGG | + | chr4_4:4259245-4259264 | None:intergenic | 35.0% |
| !! | ACTCTCAACTAAGTACTGAT+AGG | + | chr4_4:4259493-4259512 | None:intergenic | 35.0% |
| !! | AGTACTTAGTTGAGAGTATC+CGG | - | chr4_4:4259496-4259515 | Msa0664960:CDS | 35.0% |
| ! | AGAAGGAATTGATAACCTGT+GGG | + | chr4_4:4259530-4259549 | None:intergenic | 35.0% |
| ! | TAGAAGGAATTGATAACCTG+TGG | + | chr4_4:4259531-4259550 | None:intergenic | 35.0% |
| CATCTTGTAGAAGGATCTAT+AGG | + | chr4_4:4259629-4259648 | None:intergenic | 35.0% | |
| GATGGTCATTATCAACCAAT+TGG | + | chr4_4:4259728-4259747 | None:intergenic | 35.0% | |
| TTGGCAATGTCGATATTGTT+AGG | - | chr4_4:4260014-4260033 | Msa0664960:intron | 35.0% | |
| GATTCTCATACTCTACTTTC+TGG | + | chr4_4:4260379-4260398 | None:intergenic | 35.0% | |
| GTAGAGTATGAGAATCTAGT+TGG | - | chr4_4:4260383-4260402 | Msa0664960:intron | 35.0% | |
| AGAGTATGAGAATCTAGTTG+GGG | - | chr4_4:4260385-4260404 | Msa0664960:intron | 35.0% | |
| TAGATACGAGTTTGTGAGAA+TGG | - | chr4_4:4260537-4260556 | Msa0664960:five_prime_UTR | 35.0% | |
| CCCAAGATTGTTCTTCTAAT+TGG | - | chr4_4:4260605-4260624 | Msa0664960:intron | 35.0% | |
| AAGCAATTCTTACCTGAACC+AGG | + | chr4_4:4256360-4256379 | None:intergenic | 40.0% | |
| TGGTTCAGGTAAGAATTGCT+TGG | - | chr4_4:4256359-4256378 | Msa0664960:three_prime_UTR | 40.0% | |
| !!! | TCGGTCACATTAGTTTTGCT+TGG | - | chr4_4:4256454-4256473 | Msa0664960:CDS | 40.0% |
| !! | TTGCTTGGTTTGTGGCAATT+TGG | - | chr4_4:4256469-4256488 | Msa0664960:CDS | 40.0% |
| AGAGAACAAAACACTCGAGA+AGG | + | chr4_4:4256928-4256947 | None:intergenic | 40.0% | |
| ! | CTTTGGGAATAGTCACCAAA+AGG | - | chr4_4:4257079-4257098 | Msa0664960:intron | 40.0% |
| GGAATAGTCACCAAAAGGTT+GGG | - | chr4_4:4257084-4257103 | Msa0664960:intron | 40.0% | |
| GAATAGTCACCAAAAGGTTG+GGG | - | chr4_4:4257085-4257104 | Msa0664960:intron | 40.0% | |
| ATGTAACTAACCGAAACTGG+TGG | + | chr4_4:4257163-4257182 | None:intergenic | 40.0% | |
| TCAATTTCACAATGCTCCAC+AGG | + | chr4_4:4257225-4257244 | None:intergenic | 40.0% | |
| TGCATAGACTGTGGAAAGAA+AGG | - | chr4_4:4257380-4257399 | Msa0664960:CDS | 40.0% | |
| AGATTTGTCCTATGTTGCAC+CGG | - | chr4_4:4257458-4257477 | Msa0664960:intron | 40.0% | |
| GTCATGTTTGTATCCTACAC+CGG | + | chr4_4:4257480-4257499 | None:intergenic | 40.0% | |
| !! | TGTCCGTGTTAGTTCTGTAT+AGG | - | chr4_4:4257572-4257591 | Msa0664960:intron | 40.0% |
| ! | TCCATGTTGAATCCTTTTCC+TGG | - | chr4_4:4257640-4257659 | Msa0664960:intron | 40.0% |
| TCCAGGAAAAGGATTCAACA+TGG | + | chr4_4:4257644-4257663 | None:intergenic | 40.0% | |
| AGATGCTTCATTCCAGGAAA+AGG | + | chr4_4:4257655-4257674 | None:intergenic | 40.0% | |
| ACATCAAGATGCTTCATTCC+AGG | + | chr4_4:4257661-4257680 | None:intergenic | 40.0% | |
| ! | TGGAATGAAGCATCTTGATG+TGG | - | chr4_4:4257660-4257679 | Msa0664960:intron | 40.0% |
| AGAAGTGATGAAGTATGGAC+TGG | - | chr4_4:4258029-4258048 | Msa0664960:intron | 40.0% | |
| GCTGTAAAATTCTCACCATG+GGG | - | chr4_4:4258085-4258104 | Msa0664960:intron | 40.0% | |
| AAGTGGTTCCAACCTTTCAT+TGG | + | chr4_4:4258115-4258134 | None:intergenic | 40.0% | |
| ATGAAAGGGACTGTATGACT+AGG | + | chr4_4:4258176-4258195 | None:intergenic | 40.0% | |
| AGTCATACAGTCCCTTTCAT+AGG | - | chr4_4:4258176-4258195 | Msa0664960:CDS | 40.0% | |
| GTCATACAGTCCCTTTCATA+GGG | - | chr4_4:4258177-4258196 | Msa0664960:CDS | 40.0% | |
| !! | CGGTTTTATCGATGTTCTAG+AGG | - | chr4_4:4258408-4258427 | Msa0664960:CDS | 40.0% |
| TGTTGAATGTTGGCAAACAG+CGG | - | chr4_4:4258470-4258489 | Msa0664960:CDS | 40.0% | |
| ATTACTTCGAGCTTTCGTGA+AGG | - | chr4_4:4258534-4258553 | Msa0664960:intron | 40.0% | |
| ! | AGAAGATGGTTCCCTTGTTT+GGG | - | chr4_4:4258624-4258643 | Msa0664960:intron | 40.0% |
| TCTTAGTGAAGCTCATAGGT+TGG | - | chr4_4:4258744-4258763 | Msa0664960:intron | 40.0% | |
| !! | AACAGGGTATTGAAACATGG+CGG | - | chr4_4:4258867-4258886 | Msa0664960:intron | 40.0% |
| GACTAACATGGCTTAGTTCA+AGG | + | chr4_4:4258905-4258924 | None:intergenic | 40.0% | |
| CAACAGATAATGTGTTTCGG+GGG | - | chr4_4:4259190-4259209 | Msa0664960:CDS | 40.0% | |
| ! | AAAGCGCTAGAGAATTGTGT+GGG | - | chr4_4:4259263-4259282 | Msa0664960:intron | 40.0% |
| ! | GGTTCACGAGTTAATTTGGT+TGG | + | chr4_4:4259324-4259343 | None:intergenic | 40.0% |
| ACGTGGTTCACGAGTTAATT+TGG | + | chr4_4:4259328-4259347 | None:intergenic | 40.0% | |
| TGATTCTATGGCACTTTACG+TGG | + | chr4_4:4259345-4259364 | None:intergenic | 40.0% | |
| GGAAGAAGGCTATGATTCTA+TGG | + | chr4_4:4259357-4259376 | None:intergenic | 40.0% | |
| TGTTACTCTTCTTCTCTTGC+AGG | - | chr4_4:4259403-4259422 | Msa0664960:intron | 40.0% | |
| TTCTCAGTTATTCCACGCAT+AGG | - | chr4_4:4259441-4259460 | Msa0664960:intron | 40.0% | |
| ! | AAGGAATTGATAACCTGTGG+GGG | + | chr4_4:4259528-4259547 | None:intergenic | 40.0% |
| ! | GAAGGAATTGATAACCTGTG+GGG | + | chr4_4:4259529-4259548 | None:intergenic | 40.0% |
| CTTGAAAGAAAAGGGTAGTC+AGG | - | chr4_4:4259584-4259603 | Msa0664960:CDS | 40.0% | |
| TCTATAGGTCTGTTCAGGAA+TGG | + | chr4_4:4259614-4259633 | None:intergenic | 40.0% | |
| AAGGATCTATAGGTCTGTTC+AGG | + | chr4_4:4259619-4259638 | None:intergenic | 40.0% | |
| AGATCCTTCTACAAGATGTC+CGG | - | chr4_4:4259631-4259650 | Msa0664960:intron | 40.0% | |
| ! | GTGAATAAAAGCGTAGAGTG+AGG | - | chr4_4:4259693-4259712 | Msa0664960:intron | 40.0% |
| TCTGATCTCAACATTGTCTG+CGG | + | chr4_4:4259896-4259915 | None:intergenic | 40.0% | |
| TCGACATTGCCAATTAAGCT+AGG | + | chr4_4:4260007-4260026 | None:intergenic | 40.0% | |
| CAATGTCGATATTGTTAGGC+TGG | - | chr4_4:4260018-4260037 | Msa0664960:intron | 40.0% | |
| CTGAAACTCACATAACTGTG+AGG | + | chr4_4:4260072-4260091 | None:intergenic | 40.0% | |
| CTCACAGTTATGTGAGTTTC+AGG | - | chr4_4:4260070-4260089 | Msa0664960:intron | 40.0% | |
| ACAGTTATGTGAGTTTCAGG+TGG | - | chr4_4:4260073-4260092 | Msa0664960:intron | 40.0% | |
| AAATGTCAAGAAAGCCGTGA+CGG | - | chr4_4:4260271-4260290 | Msa0664960:intron | 40.0% | |
| CATCAATGATTGCTGATGCA+GGG | - | chr4_4:4260351-4260370 | Msa0664960:intron | 40.0% | |
| GAGTATGAGAATCTAGTTGG+GGG | - | chr4_4:4260386-4260405 | Msa0664960:intron | 40.0% | |
| CTCACAAACTCGTATCTACT+AGG | + | chr4_4:4260535-4260554 | None:intergenic | 40.0% | |
| GAGTGTATGGTCTCAGCTAA+TGG | + | chr4_4:4256243-4256262 | None:intergenic | 45.0% | |
| GAGAGAAGAAGAGAGAAGAG+AGG | + | chr4_4:4256320-4256339 | None:intergenic | 45.0% | |
| ! | ACTCGAGAAGGCATAGCAAT+GGG | + | chr4_4:4256916-4256935 | None:intergenic | 45.0% |
| GGGAATAGTCACCAAAAGGT+TGG | - | chr4_4:4257083-4257102 | Msa0664960:intron | 45.0% | |
| CTGGAAGTGGAACATAATGC+TGG | + | chr4_4:4257123-4257142 | None:intergenic | 45.0% | |
| CAGCATTATGTTCCACTTCC+AGG | - | chr4_4:4257121-4257140 | Msa0664960:intron | 45.0% | |
| AGAATGTAGAAGCCTGGAAG+TGG | + | chr4_4:4257136-4257155 | None:intergenic | 45.0% | |
| ! | ATGAAGCATCTTGATGTGGC+TGG | - | chr4_4:4257664-4257683 | Msa0664960:intron | 45.0% |
| !! | ATGAAGTATGGACTGGTCAG+AGG | - | chr4_4:4258036-4258055 | Msa0664960:intron | 45.0% |
| !! | TGAAGTATGGACTGGTCAGA+GGG | - | chr4_4:4258037-4258056 | Msa0664960:intron | 45.0% |
| GTAAAATTCTCACCATGGGG+AGG | - | chr4_4:4258088-4258107 | Msa0664960:intron | 45.0% | |
| AAAGGTTGGAACCACTTGTG+AGG | - | chr4_4:4258118-4258137 | Msa0664960:intron | 45.0% | |
| AAGGTTGGAACCACTTGTGA+GGG | - | chr4_4:4258119-4258138 | Msa0664960:intron | 45.0% | |
| GTTGAATGTTGGCAAACAGC+GGG | - | chr4_4:4258471-4258490 | Msa0664960:CDS | 45.0% | |
| GAGAAGATGGTTCCCTTGTT+TGG | - | chr4_4:4258623-4258642 | Msa0664960:intron | 45.0% | |
| ATTTCCCTCCACCCAAACAA+GGG | + | chr4_4:4258638-4258657 | None:intergenic | 45.0% | |
| CATGGCTTAGTTCAAGGCAT+AGG | + | chr4_4:4258899-4258918 | None:intergenic | 45.0% | |
| ! | CAAAGCGCTAGAGAATTGTG+TGG | - | chr4_4:4259262-4259281 | Msa0664960:intron | 45.0% |
| GCTAGAGAATTGTGTGGGAA+AGG | - | chr4_4:4259268-4259287 | Msa0664960:intron | 45.0% | |
| TATTCCACGCATAGGAGAGA+TGG | - | chr4_4:4259449-4259468 | Msa0664960:intron | 45.0% | |
| GTATCCGGACATCTTGTAGA+AGG | + | chr4_4:4259638-4259657 | None:intergenic | 45.0% | |
| GCAGTGAACTGAACTGTATC+CGG | + | chr4_4:4259653-4259672 | None:intergenic | 45.0% | |
| AAAGCGTAGAGTGAGGAAGA+TGG | - | chr4_4:4259700-4259719 | Msa0664960:intron | 45.0% | |
| AAGCGTAGAGTGAGGAAGAT+GGG | - | chr4_4:4259701-4259720 | Msa0664960:intron | 45.0% | |
| ACAGCTGAATGTGGAAGACT+GGG | + | chr4_4:4259820-4259839 | None:intergenic | 45.0% | |
| TACAGCTGAATGTGGAAGAC+TGG | + | chr4_4:4259821-4259840 | None:intergenic | 45.0% | |
| CTTCCACATTCAGCTGTAAG+AGG | - | chr4_4:4259823-4259842 | Msa0664960:intron | 45.0% | |
| CTTCCTCTTACAGCTGAATG+TGG | + | chr4_4:4259829-4259848 | None:intergenic | 45.0% | |
| CACATTCAGCTGTAAGAGGA+AGG | - | chr4_4:4259827-4259846 | Msa0664960:intron | 45.0% | |
| AAAACTAGTCACGGTCCGTA+AGG | - | chr4_4:4259981-4260000 | Msa0664960:intron | 45.0% | |
| TCCGTAAGGCCTAGCTTAAT+TGG | - | chr4_4:4259995-4260014 | Msa0664960:intron | 45.0% | |
| GCCAATTAAGCTAGGCCTTA+CGG | + | chr4_4:4259999-4260018 | None:intergenic | 45.0% | |
| TTAGGCTGGACATCTTCATC+CGG | - | chr4_4:4260032-4260051 | Msa0664960:intron | 45.0% | |
| CACGGCTTTCTTGACATTTG+AGG | + | chr4_4:4260270-4260289 | None:intergenic | 45.0% | |
| AATGTCAAGAAAGCCGTGAC+GGG | - | chr4_4:4260272-4260291 | Msa0664960:intron | 45.0% | |
| GCATCAATGATTGCTGATGC+AGG | - | chr4_4:4260350-4260369 | Msa0664960:intron | 45.0% | |
| GAGTGGTTGCCATTCATTCA+GGG | - | chr4_4:4260408-4260427 | Msa0664960:intron | 45.0% | |
| !! | AATATAAATTATTTATAGAA+TGG | + | chr4_4:4257420-4257439 | None:intergenic | 5.0% |
| !! | TTAAAAAAATTTAAGTAAAT+TGG | - | chr4_4:4257972-4257991 | Msa0664960:CDS | 5.0% |
| ! | GGTGGCGAACAAAGAGTGTA+TGG | + | chr4_4:4256256-4256275 | None:intergenic | 50.0% |
| GTGTGTGTGTGTTTGCCACA+CGG | + | chr4_4:4256292-4256311 | None:intergenic | 50.0% | |
| ATGGAAAGGATCCCTACACG+TGG | - | chr4_4:4256757-4256776 | Msa0664960:intron | 50.0% | |
| AAGGATCCCTACACGTGGAT+AGG | - | chr4_4:4256762-4256781 | Msa0664960:intron | 50.0% | |
| AGGATCCCTACACGTGGATA+GGG | - | chr4_4:4256763-4256782 | Msa0664960:intron | 50.0% | |
| TTCTCTCTCCAACGGCGATT+TGG | - | chr4_4:4256829-4256848 | Msa0664960:intron | 50.0% | |
| TCTCTCTCCAACGGCGATTT+GGG | - | chr4_4:4256830-4256849 | Msa0664960:intron | 50.0% | |
| TCAGAGAGTTTGGAGGGACA+TGG | - | chr4_4:4256870-4256889 | Msa0664960:intron | 50.0% | |
| AGAGTTTGGAGGGACATGGA+GGG | - | chr4_4:4256874-4256893 | Msa0664960:intron | 50.0% | |
| ! | CTCGAGAAGGCATAGCAATG+GGG | + | chr4_4:4256915-4256934 | None:intergenic | 50.0% |
| ! | CACTCGAGAAGGCATAGCAA+TGG | + | chr4_4:4256917-4256936 | None:intergenic | 50.0% |
| CATTCTCACGCCACCAGTTT+CGG | - | chr4_4:4257150-4257169 | Msa0664960:intron | 50.0% | |
| ! | CGAAGAAGAAAAGGCACGCA+TGG | - | chr4_4:4257291-4257310 | Msa0664960:intron | 50.0% |
| ! | GAAGAAAAGGCACGCATGGT+TGG | - | chr4_4:4257295-4257314 | Msa0664960:intron | 50.0% |
| ATCCTACACCGGTGCAACAT+AGG | + | chr4_4:4257469-4257488 | None:intergenic | 50.0% | |
| AAGCATCTTGATGTGGCTGG+TGG | - | chr4_4:4257667-4257686 | Msa0664960:intron | 50.0% | |
| AGTCTAGAGACCCTCACAAG+TGG | + | chr4_4:4258132-4258151 | None:intergenic | 50.0% | |
| GGACTGTATGACTAGGACGA+TGG | + | chr4_4:4258169-4258188 | None:intergenic | 50.0% | |
| AAGCAGAGAGGGCTTCAAGA+CGG | - | chr4_4:4258388-4258407 | Msa0664960:CDS | 50.0% | |
| ! | AGATGGTTCCCTTGTTTGGG+TGG | - | chr4_4:4258627-4258646 | Msa0664960:intron | 50.0% |
| CATTTCCCTCCACCCAAACA+AGG | + | chr4_4:4258639-4258658 | None:intergenic | 50.0% | |
| GTGAGGAAGATGGGTCCAAT+TGG | - | chr4_4:4259710-4259729 | Msa0664960:intron | 50.0% | |
| CAGCTGAATGTGGAAGACTG+GGG | + | chr4_4:4259819-4259838 | None:intergenic | 50.0% | |
| TAGGCTGGACATCTTCATCC+GGG | - | chr4_4:4260033-4260052 | Msa0664960:intron | 50.0% | |
| TCTTCATCCGGGTTCAAACC+CGG | - | chr4_4:4260044-4260063 | Msa0664960:intron | 50.0% | |
| TCACATAACTGTGAGGTCCC+GGG | + | chr4_4:4260065-4260084 | None:intergenic | 50.0% | |
| CTCACATAACTGTGAGGTCC+CGG | + | chr4_4:4260066-4260085 | None:intergenic | 50.0% | |
| CAGAAAAGGGTAACCCGTCA+CGG | + | chr4_4:4260288-4260307 | None:intergenic | 50.0% | |
| TGAGAATCTAGTTGGGGGAG+TGG | - | chr4_4:4260391-4260410 | Msa0664960:intron | 50.0% | |
| GGAGTGGTTGCCATTCATTC+AGG | - | chr4_4:4260407-4260426 | Msa0664960:intron | 50.0% | |
| ! | TTGCCACACGGAAGCGTAGA+GGG | + | chr4_4:4256280-4256299 | None:intergenic | 55.0% |
| ! | TTTGCCACACGGAAGCGTAG+AGG | + | chr4_4:4256281-4256300 | None:intergenic | 55.0% |
| ACCAGGCGAGAAACGAGAGA+CGG | + | chr4_4:4256343-4256362 | None:intergenic | 55.0% | |
| TCTCGTTTCTCGCCTGGTTC+AGG | - | chr4_4:4256345-4256364 | Msa0664960:three_prime_UTR | 55.0% | |
| GGATCCCTACACGTGGATAG+GGG | - | chr4_4:4256764-4256783 | Msa0664960:intron | 55.0% | |
| CGAGAAAACCCGACCCATCA+GGG | - | chr4_4:4256787-4256806 | Msa0664960:intron | 55.0% | |
| AAAACCCGACCCATCAGGGA+TGG | - | chr4_4:4256791-4256810 | Msa0664960:intron | 55.0% | |
| AAACCCGACCCATCAGGGAT+GGG | - | chr4_4:4256792-4256811 | Msa0664960:intron | 55.0% | |
| ATCGTTCCCCCATCCCTGAT+GGG | + | chr4_4:4256803-4256822 | None:intergenic | 55.0% | |
| TATCGTTCCCCCATCCCTGA+TGG | + | chr4_4:4256804-4256823 | None:intergenic | 55.0% | |
| CTCTCTCCAACGGCGATTTG+GGG | - | chr4_4:4256831-4256850 | Msa0664960:intron | 55.0% | |
| AACATGCCCCAAATCGCCGT+TGG | + | chr4_4:4256840-4256859 | None:intergenic | 55.0% | |
| GAGAGTTTGGAGGGACATGG+AGG | - | chr4_4:4256873-4256892 | Msa0664960:intron | 55.0% | |
| GGGACATGGAGGGCAAAATC+CGG | - | chr4_4:4256884-4256903 | Msa0664960:intron | 55.0% | |
| GGCGTGAGAATGTAGAAGCC+TGG | + | chr4_4:4257142-4257161 | None:intergenic | 55.0% | |
| GTGCTGGGTTGCATAGACTG+TGG | - | chr4_4:4257371-4257390 | Msa0664960:CDS | 55.0% | |
| ! | GTCCTATGTTGCACCGGTGT+AGG | - | chr4_4:4257464-4257483 | Msa0664960:intron | 55.0% |
| CCTTTCATTGGACCTCCCCA+TGG | + | chr4_4:4258103-4258122 | None:intergenic | 55.0% | |
| CCATGGGGAGGTCCAATGAA+AGG | - | chr4_4:4258100-4258119 | Msa0664960:intron | 55.0% | |
| GGGGAGGTCCAATGAAAGGT+TGG | - | chr4_4:4258104-4258123 | Msa0664960:intron | 55.0% | |
| !! | AAACAGCGGGCTGCCGAAAA+AGG | - | chr4_4:4258484-4258503 | Msa0664960:CDS | 55.0% |
| ! | TGGTTCCCTTGTTTGGGTGG+AGG | - | chr4_4:4258630-4258649 | Msa0664960:intron | 55.0% |
| ! | GGTTCCCTTGTTTGGGTGGA+GGG | - | chr4_4:4258631-4258650 | Msa0664960:intron | 55.0% |
| !! | GGGTATTGAAACATGGCGGC+AGG | - | chr4_4:4258871-4258890 | Msa0664960:intron | 55.0% |
| GCAACCATCTCTCCTATGCG+TGG | + | chr4_4:4259456-4259475 | None:intergenic | 55.0% | |
| CGCATAGGAGAGATGGTTGC+TGG | - | chr4_4:4259456-4259475 | Msa0664960:intron | 55.0% | |
| TAACCTGTGGGGGAAAACGC+CGG | + | chr4_4:4259518-4259537 | None:intergenic | 55.0% | |
| CTTCATCCGGGTTCAAACCC+GGG | - | chr4_4:4260045-4260064 | Msa0664960:intron | 55.0% | |
| CCAGGCGAGAAACGAGAGAC+GGG | + | chr4_4:4256342-4256361 | None:intergenic | 60.0% | |
| CTCGCCCCTATCCACGTGTA+GGG | + | chr4_4:4256771-4256790 | None:intergenic | 60.0% | |
| TCTCGCCCCTATCCACGTGT+AGG | + | chr4_4:4256772-4256791 | None:intergenic | 60.0% | |
| GCGAGAAAACCCGACCCATC+AGG | - | chr4_4:4256786-4256805 | Msa0664960:intron | 60.0% | |
| AACCCGACCCATCAGGGATG+GGG | - | chr4_4:4256793-4256812 | Msa0664960:intron | 60.0% | |
| ! | TTCCCCCATCCCTGATGGGT+CGG | + | chr4_4:4256799-4256818 | None:intergenic | 60.0% |
| ! | CGGCGATTTGGGGCATGTTC+AGG | - | chr4_4:4256841-4256860 | Msa0664960:intron | 60.0% |
| ! | GAAGGCATAGCAATGGGGCG+TGG | + | chr4_4:4256910-4256929 | None:intergenic | 60.0% |
| CTTGATGTGGCTGGTGGCAC+AGG | - | chr4_4:4257673-4257692 | Msa0664960:intron | 60.0% | |
| ! | TATCCGGCGTTTTCCCCCAC+AGG | - | chr4_4:4259512-4259531 | Msa0664960:CDS | 60.0% |
| TGAGGTCCCGGGTTTGAACC+CGG | + | chr4_4:4260054-4260073 | None:intergenic | 60.0% | |
| ! | CCACACGGAAGCGTAGAGGG+CGG | + | chr4_4:4256277-4256296 | None:intergenic | 65.0% |
| CCCGTCTCTCGTTTCTCGCC+TGG | - | chr4_4:4256339-4256358 | Msa0664960:three_prime_UTR | 65.0% | |
| ACCCGACCCATCAGGGATGG+GGG | - | chr4_4:4256794-4256813 | Msa0664960:intron | 65.0% | |
| ! | TCCCCCATCCCTGATGGGTC+GGG | + | chr4_4:4256798-4256817 | None:intergenic | 65.0% |
| GCATAGCAATGGGGCGTGGC+CGG | + | chr4_4:4256906-4256925 | None:intergenic | 65.0% | |
| ! | CACGGAAGCGTAGAGGGCGG+TGG | + | chr4_4:4256274-4256293 | None:intergenic | 70.0% |
| CCGCCCTCTACGCTTCCGTG+TGG | - | chr4_4:4256274-4256293 | Msa0664960:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4256208 | 4260676 | 4256208 | ID=Msa0664960;Name=Msa0664960 |
| chr4_4 | mRNA | 4256208 | 4260676 | 4256208 | ID=Msa0664960-mRNA-1;Parent=Msa0664960;Name=Msa0664960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155|1|1|1|0.77|0.7|10|234|290 |
| chr4_4 | exon | 4256208 | 4256543 | 4256208 | ID=Msa0664960-mRNA-1:exon:1407;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4257351 | 4257459 | 4257351 | ID=Msa0664960-mRNA-1:exon:1406;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4257941 | 4258012 | 4257941 | ID=Msa0664960-mRNA-1:exon:1405;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4258123 | 4258267 | 4258123 | ID=Msa0664960-mRNA-1:exon:1404;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4258379 | 4258537 | 4258379 | ID=Msa0664960-mRNA-1:exon:1403;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4259190 | 4259251 | 4259190 | ID=Msa0664960-mRNA-1:exon:1402;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4259483 | 4259609 | 4259483 | ID=Msa0664960-mRNA-1:exon:1401;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4259713 | 4259828 | 4259713 | ID=Msa0664960-mRNA-1:exon:1400;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4260518 | 4260610 | 4260518 | ID=Msa0664960-mRNA-1:exon:1399;Parent=Msa0664960-mRNA-1 |
| chr4_4 | exon | 4260634 | 4260676 | 4260634 | ID=Msa0664960-mRNA-1:exon:1398;Parent=Msa0664960-mRNA-1 |
| chr4_4 | five_prime_UTR | 4260634 | 4260676 | 4260634 | ID=Msa0664960-mRNA-1:five_prime_utr;Parent=Msa0664960-mRNA-1 |
| chr4_4 | five_prime_UTR | 4260518 | 4260610 | 4260518 | ID=Msa0664960-mRNA-1:five_prime_utr;Parent=Msa0664960-mRNA-1 |
| chr4_4 | five_prime_UTR | 4259810 | 4259828 | 4259810 | ID=Msa0664960-mRNA-1:five_prime_utr;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4259713 | 4259809 | 4259713 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4259483 | 4259609 | 4259483 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4259190 | 4259251 | 4259190 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4258379 | 4258537 | 4258379 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4258123 | 4258267 | 4258123 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4257941 | 4258012 | 4257941 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4257351 | 4257459 | 4257351 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | CDS | 4256442 | 4256543 | 4256442 | ID=Msa0664960-mRNA-1:cds;Parent=Msa0664960-mRNA-1 |
| chr4_4 | three_prime_UTR | 4256208 | 4256441 | 4256208 | ID=Msa0664960-mRNA-1:three_prime_utr;Parent=Msa0664960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
