Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626830 | XP_003604349.1 | 98.621 | 290 | 4 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626830 | sp|Q9LVC8|COQ5_ARATH | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.10e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101690 | Msa0626830 | 0.801418 | 9.090821e-49 | -8.615850e-47 |
| Msa0626830 | Msa0630720 | 0.815536 | 8.791052e-52 | -8.615850e-47 |
| Msa0626830 | Msa0664960 | 0.886408 | 3.509595e-72 | -8.615850e-47 |
| Msa0626830 | Msa0680240 | 0.810904 | 9.140640e-51 | -8.615850e-47 |
| Msa0626830 | Msa1340020 | 0.808895 | 2.473459e-50 | -8.615850e-47 |
| Msa0184020 | Msa0626830 | 0.802885 | 4.536955e-49 | -8.615850e-47 |
| Msa0521880 | Msa0626830 | 0.802794 | 4.736717e-49 | -8.615850e-47 |
| Msa0526890 | Msa0626830 | 0.809117 | 2.217438e-50 | -8.615850e-47 |
| Msa0554750 | Msa0626830 | 0.971490 | 3.029753e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626830 | MtrunA17_Chr4g0003041 | 98.621 | 290 | 4 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626830 | AT5G57300.3 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0626830 | AT5G57300.1 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0626830 | AT5G57300.4 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0626830 | AT5G57300.2 | 73.103 | 290 | 76 | 2 | 1 | 290 | 1 | 288 | 1.11e-157 | 441 |
| Msa0626830 | AT1G23360.1 | 28.736 | 261 | 155 | 7 | 31 | 280 | 12 | 252 | 8.62e-22 | 92.4 |
Find 98 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAGATTGTTCTTCTAAT+TGG | 0.136627 | 4_3:-6877150 | Msa0626830:three_prime_UTR |
| AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4_3:-6880699 | Msa0626830:exon |
| GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4_3:-6877348 | Msa0626830:CDS |
| GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4_3:+6877379 | None:intergenic |
| TTGCAAACACCTAATATTAA+TGG | 0.258533 | 4_3:+6877180 | None:intergenic |
| CAGCATTATGTTCCACTTCC+AGG | 0.259306 | 4_3:-6880640 | Msa0626830:CDS |
| TCTCGTTTCTCGCCTGGTTC+AGG | 0.292738 | 4_3:-6880983 | Msa0626830:intron |
| CATGATTTATTATATAATTA+CGG | 0.292739 | 4_3:+6877291 | None:intergenic |
| GATGGTTACACTATTGCATT+TGG | 0.299423 | 4_3:-6879063 | Msa0626830:CDS |
| GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4_3:-6879131 | Msa0626830:CDS |
| AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4_3:-6879270 | Msa0626830:intron |
| TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4_3:+6879291 | None:intergenic |
| ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4_3:-6880698 | Msa0626830:exon |
| TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4_3:+6879292 | None:intergenic |
| ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4_3:+6878827 | None:intergenic |
| TCCAATTAGAAGAACAATCT+TGG | 0.346971 | 4_3:+6877149 | None:intergenic |
| AAGTTTATTCCCCAACCTTT+TGG | 0.347857 | 4_3:+6880667 | None:intergenic |
| CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4_3:-6880088 | Msa0626830:intron |
| CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4_3:-6880611 | Msa0626830:intron |
| ATGATTTATTATATAATTAC+GGG | 0.363596 | 4_3:+6877292 | None:intergenic |
| TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4_3:+6880598 | None:intergenic |
| ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4_3:-6879056 | Msa0626830:CDS |
| AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4_3:-6879130 | Msa0626830:CDS |
| CCCGTCTCTCGTTTCTCGCC+TGG | 0.375748 | 4_3:-6880989 | Msa0626830:five_prime_UTR |
| GGAATAGTCACCAAAAGGTT+GGG | 0.387755 | 4_3:-6880677 | Msa0626830:CDS |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4_3:-6881124 | None:intergenic |
| CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4_3:-6878298 | Msa0626830:CDS |
| GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4_3:-6877372 | Msa0626830:CDS |
| AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4_3:+6880109 | None:intergenic |
| AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4_3:+6880408 | None:intergenic |
| TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4_3:-6879144 | Msa0626830:intron |
| TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4_3:-6877371 | Msa0626830:CDS |
| AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4_3:-6879014 | Msa0626830:intron |
| AACCATCCATTGAATCATCT+TGG | 0.445596 | 4_3:+6879079 | None:intergenic |
| ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4_3:+6880103 | None:intergenic |
| ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4_3:-6880406 | Msa0626830:CDS |
| CCAATTAGAAGAACAATCTT+GGG | 0.461393 | 4_3:+6877150 | None:intergenic |
| GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4_3:-6879123 | Msa0626830:CDS |
| AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4_3:-6878258 | Msa0626830:CDS |
| GAGTGTATGGTCTCAGCTAA+TGG | 0.468461 | 4_3:+6881088 | None:intergenic |
| GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4_3:+6878852 | None:intergenic |
| ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4_3:-6879062 | Msa0626830:CDS |
| ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4_3:+6878264 | None:intergenic |
| TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4_3:-6880381 | Msa0626830:intron |
| GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4_3:-6877405 | Msa0626830:CDS |
| TAGATACGAGTTTGTGAGAA+TGG | 0.480268 | 4_3:-6877218 | Msa0626830:three_prime_UTR |
| AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4_3:-6879127 | Msa0626830:CDS |
| GGGAATAGTCACCAAAAGGT+TGG | 0.494727 | 4_3:-6880678 | Msa0626830:CDS |
| ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4_3:-6880479 | Msa0626830:CDS |
| TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4_3:-6879081 | Msa0626830:CDS |
| TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4_3:-6879124 | Msa0626830:CDS |
| GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4_3:-6877347 | Msa0626830:CDS |
| CCAGGCGAGAAACGAGAGAC+GGG | 0.503692 | 4_3:+6880989 | None:intergenic |
| CTCACAAACTCGTATCTACT+AGG | 0.505688 | 4_3:+6877223 | None:intergenic |
| AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4_3:-6879294 | Msa0626830:CDS |
| CTTTGGGAATAGTCACCAAA+AGG | 0.511333 | 4_3:-6880682 | Msa0626830:CDS |
| GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4_3:-6880466 | Msa0626830:CDS |
| GAGTTTCCAAGATGATTCAA+TGG | 0.519909 | 4_3:-6879085 | Msa0626830:CDS |
| CACGGAAGCGTAGAGGGCGG+TGG | 0.520965 | 4_3:+6881057 | None:intergenic |
| GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4_3:+6880622 | None:intergenic |
| AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4_3:+6880628 | None:intergenic |
| CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4_3:+6879118 | None:intergenic |
| CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4_3:-6880470 | Msa0626830:CDS |
| GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4_3:-6878883 | Msa0626830:CDS |
| TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4_3:-6878313 | Msa0626830:CDS |
| CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4_3:-6877404 | Msa0626830:CDS |
| TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4_3:-6879377 | Msa0626830:CDS |
| ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4_3:-6880097 | Msa0626830:CDS |
| CTGGAAGTGGAACATAATGC+TGG | 0.574988 | 4_3:+6880641 | None:intergenic |
| AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4_3:-6877370 | Msa0626830:CDS |
| TTGCCACACGGAAGCGTAGA+GGG | 0.577744 | 4_3:+6881051 | None:intergenic |
| TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4_3:-6878305 | Msa0626830:CDS |
| GAGAGAAGAAGAGAGAAGAG+AGG | 0.582470 | 4_3:+6881011 | None:intergenic |
| CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4_3:+6878858 | None:intergenic |
| GAATAGTCACCAAAAGGTTG+GGG | 0.588614 | 4_3:-6880676 | Msa0626830:CDS |
| AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4_3:-6879366 | Msa0626830:CDS |
| GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4_3:-6879283 | Msa0626830:CDS |
| TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4_3:-6878890 | Msa0626830:intron |
| TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4_3:-6880405 | Msa0626830:CDS |
| AAGCAATTCTTACCTGAACC+AGG | 0.613905 | 4_3:+6880971 | None:intergenic |
| TTTGCCACACGGAAGCGTAG+AGG | 0.616595 | 4_3:+6881050 | None:intergenic |
| TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4_3:+6878840 | None:intergenic |
| TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4_3:-6880101 | Msa0626830:CDS |
| GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4_3:+6878301 | None:intergenic |
| ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4_3:-6879378 | Msa0626830:CDS |
| ACCAGGCGAGAAACGAGAGA+CGG | 0.632914 | 4_3:+6880988 | None:intergenic |
| AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4_3:+6878229 | None:intergenic |
| GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4_3:-6877369 | Msa0626830:CDS |
| TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4_3:+6880120 | None:intergenic |
| TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4_3:-6879284 | Msa0626830:CDS |
| GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4_3:+6878228 | None:intergenic |
| ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4_3:+6879119 | None:intergenic |
| AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4_3:-6880094 | Msa0626830:CDS |
| CCGCCCTCTACGCTTCCGTG+TGG | 0.691726 | 4_3:-6881054 | Msa0626830:five_prime_UTR |
| CCACACGGAAGCGTAGAGGG+CGG | 0.697309 | 4_3:+6881054 | None:intergenic |
| AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4_3:-6878887 | Msa0626830:intron |
| ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4_3:+6880601 | None:intergenic |
| GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4_3:-6880390 | Msa0626830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTAACTAAAAAAA+TGG | + | chr4_3:6877654-6877673 | None:intergenic | 10.0% |
| !! | GTAATAATTTAAAAAAGAAA+TGG | + | chr4_3:6877990-6878009 | None:intergenic | 10.0% |
| !! | AATTAAATAATGAATAACAT+AGG | + | chr4_3:6880219-6880238 | None:intergenic | 10.0% |
| !!! | ACTAGTTTTTTTTTTTTTTT+AGG | + | chr4_3:6880589-6880608 | None:intergenic | 10.0% |
| !! | ATGATTTATTATATAATTAC+GGG | + | chr4_3:6880932-6880951 | None:intergenic | 10.0% |
| !! | CATGATTTATTATATAATTA+CGG | + | chr4_3:6880933-6880952 | None:intergenic | 10.0% |
| !!! | TTATTTTTTCCATTAATATT+AGG | - | chr4_3:6881032-6881051 | Msa0626830:five_prime_UTR | 10.0% |
| !!! | ACATTTTTCCATAAAAAATT+AGG | - | chr4_3:6877713-6877732 | Msa0626830:intron | 15.0% |
| !! | AATTATTTATAGAATGGAAT+AGG | + | chr4_3:6877874-6877893 | None:intergenic | 15.0% |
| !! | TTAGAAACTATAAAGTTTAA+AGG | + | chr4_3:6878178-6878197 | None:intergenic | 15.0% |
| !! | TATAATCATTAATAAGCATA+AGG | - | chr4_3:6878771-6878790 | Msa0626830:intron | 15.0% |
| !!! | GATTTTTTATTGATTTTACA+GGG | - | chr4_3:6878793-6878812 | Msa0626830:intron | 15.0% |
| !!! | ATTTTTTATTGATTTTACAG+GGG | - | chr4_3:6878794-6878813 | Msa0626830:intron | 15.0% |
| !! | TTAATTTATCTTCATTTGTT+AGG | - | chr4_3:6879032-6879051 | Msa0626830:CDS | 15.0% |
| !!! | TTTTTTTCATTTCTTTAACA+GGG | - | chr4_3:6879318-6879337 | Msa0626830:CDS | 15.0% |
| !! | TACAAGGTATATAAATTAAA+GGG | + | chr4_3:6879546-6879565 | None:intergenic | 15.0% |
| !! | TTACAAGGTATATAAATTAA+AGG | + | chr4_3:6879547-6879566 | None:intergenic | 15.0% |
| !! | AATAATGAAAAAAACATCAC+TGG | + | chr4_3:6877458-6877477 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTCTTTGTTATTT+AGG | - | chr4_3:6877494-6877513 | Msa0626830:intron | 20.0% |
| !! | AAACAAATAATATTAACCTG+TGG | - | chr4_3:6877666-6877685 | Msa0626830:intron | 20.0% |
| !!! | GTTTGAAACCTAATTTTTTA+TGG | + | chr4_3:6877724-6877743 | None:intergenic | 20.0% |
| !!! | ATATAAAATGTTACTTTGAG+TGG | - | chr4_3:6878201-6878220 | Msa0626830:intron | 20.0% |
| !! | CATGAGATATCAATAAATAA+GGG | - | chr4_3:6878281-6878300 | Msa0626830:CDS | 20.0% |
| !!! | GGATTTTTTATTGATTTTAC+AGG | - | chr4_3:6878792-6878811 | Msa0626830:intron | 20.0% |
| !!! | GTTTTTATGCTTATTTTGAT+AGG | - | chr4_3:6879062-6879081 | Msa0626830:CDS | 20.0% |
| !!! | GTTTTTTTCATTTCTTTAAC+AGG | - | chr4_3:6879317-6879336 | Msa0626830:CDS | 20.0% |
| !!! | TCGATTATGTTTTATTTACA+AGG | + | chr4_3:6879562-6879581 | None:intergenic | 20.0% |
| !! | AAACATAATCGAAGTTTATA+TGG | - | chr4_3:6879570-6879589 | Msa0626830:intron | 20.0% |
| !!! | TACTTTCATACTTCAAATTT+TGG | - | chr4_3:6879613-6879632 | Msa0626830:intron | 20.0% |
| !! | AGTTATATTCTATTCAAGTA+TGG | + | chr4_3:6879845-6879864 | None:intergenic | 20.0% |
| !! | TGACTAATGTATTATATTGA+TGG | - | chr4_3:6880777-6880796 | Msa0626830:intron | 20.0% |
| ! | TTTGCAAAGAAAAGAACATA+AGG | + | chr4_3:6877323-6877342 | None:intergenic | 25.0% |
| !!! | TTTCATTATTGCTGACTTAT+TGG | - | chr4_3:6877468-6877487 | Msa0626830:intron | 25.0% |
| !!! | TTCATTATTGCTGACTTATT+GGG | - | chr4_3:6877469-6877488 | Msa0626830:intron | 25.0% |
| !!! | GTTTTGAACAATCAAATTCA+TGG | - | chr4_3:6877516-6877535 | Msa0626830:intron | 25.0% |
| ! | GCATGAGATATCAATAAATA+AGG | - | chr4_3:6878280-6878299 | Msa0626830:CDS | 25.0% |
| ! | ACCTTATATAAACAGAAACT+TGG | + | chr4_3:6878413-6878432 | None:intergenic | 25.0% |
| ! | TTGAAAAATATGTAGTGTGT+GGG | - | chr4_3:6878469-6878488 | Msa0626830:intron | 25.0% |
| ! | TCTCCATATTAATGCAATAT+TGG | + | chr4_3:6878713-6878732 | None:intergenic | 25.0% |
| !! | ACATTCTCATTTACCTTTTT+CGG | + | chr4_3:6878967-6878986 | None:intergenic | 25.0% |
| !!! | ATGCTTATTTTGATAGGTTA+TGG | - | chr4_3:6879068-6879087 | Msa0626830:CDS | 25.0% |
| ! | TAAATATAGGAAGACTAACA+TGG | + | chr4_3:6879384-6879403 | None:intergenic | 25.0% |
| ! | ACTCACAGTTCTTTAAATAT+AGG | + | chr4_3:6879397-6879416 | None:intergenic | 25.0% |
| ! | TTGAAGTATGAAAGTAAACA+AGG | + | chr4_3:6879609-6879628 | None:intergenic | 25.0% |
| !! | TTTTGGACAAAAGAATTAAG+AGG | - | chr4_3:6879630-6879649 | Msa0626830:intron | 25.0% |
| !! | GGATATATCTTTGAAAATTG+AGG | - | chr4_3:6879756-6879775 | Msa0626830:intron | 25.0% |
| ! | TTTGAAAATTGAGGAATTCT+CGG | - | chr4_3:6879765-6879784 | Msa0626830:intron | 25.0% |
| !!! | TCATTTTAGCTTGAAAGAAA+AGG | - | chr4_3:6880042-6880061 | Msa0626830:intron | 25.0% |
| !!! | CATTTTAGCTTGAAAGAAAA+GGG | - | chr4_3:6880043-6880062 | Msa0626830:intron | 25.0% |
| ! | ACTAAAGCATATAAAGATGT+TGG | + | chr4_3:6880142-6880161 | None:intergenic | 25.0% |
| ! | ATAATGAATAACATAGGAGA+TGG | + | chr4_3:6880213-6880232 | None:intergenic | 25.0% |
| !! | AGATCAGATATACTCATTTT+GGG | - | chr4_3:6880375-6880394 | Msa0626830:intron | 25.0% |
| !!! | ACTGTGTAGTTTTTTTATGT+TGG | - | chr4_3:6880653-6880672 | Msa0626830:CDS | 25.0% |
| ! | ACATTAGTCAATACAGAAAA+GGG | + | chr4_3:6880767-6880786 | None:intergenic | 25.0% |
| ! | TACATTAGTCAATACAGAAA+AGG | + | chr4_3:6880768-6880787 | None:intergenic | 25.0% |
| ! | TTGCAAACACCTAATATTAA+TGG | + | chr4_3:6881044-6881063 | None:intergenic | 25.0% |
| ! | TCTTTTCTTTGCAAATTGCT+CGG | - | chr4_3:6877328-6877347 | Msa0626830:exon | 30.0% |
| AACAATCAAATTCATGGCTT+TGG | - | chr4_3:6877522-6877541 | Msa0626830:intron | 30.0% | |
| ACAATCAAATTCATGGCTTT+GGG | - | chr4_3:6877523-6877542 | Msa0626830:intron | 30.0% | |
| ACATGTAAACGAAGAAGAAA+AGG | - | chr4_3:6877742-6877761 | Msa0626830:intron | 30.0% | |
| AGCACTCATTAAATCATTCA+TGG | + | chr4_3:6877816-6877835 | None:intergenic | 30.0% | |
| ATGAATGATTTAATGAGTGC+TGG | - | chr4_3:6877815-6877834 | Msa0626830:intron | 30.0% | |
| TGAATGATTTAATGAGTGCT+GGG | - | chr4_3:6877816-6877835 | Msa0626830:intron | 30.0% | |
| CGACATTAATGCGTAAAAAT+CGG | + | chr4_3:6878012-6878031 | None:intergenic | 30.0% | |
| AATCCTATACAGAACTAACA+CGG | + | chr4_3:6878038-6878057 | None:intergenic | 30.0% | |
| TAATTTCTGCTCAATTTCTC+AGG | - | chr4_3:6878071-6878090 | Msa0626830:intron | 30.0% | |
| AAGTTTAAAGGTGAGTATGA+AGG | + | chr4_3:6878166-6878185 | None:intergenic | 30.0% | |
| TGTAGTAGCAGTTAGATAAA+AGG | - | chr4_3:6878239-6878258 | Msa0626830:intron | 30.0% | |
| TGTTACAGATAATGTGAGAT+TGG | - | chr4_3:6878381-6878400 | Msa0626830:intron | 30.0% | |
| GCCAAGTTTCTGTTTATATA+AGG | - | chr4_3:6878409-6878428 | Msa0626830:intron | 30.0% | |
| CTTGAAAAATATGTAGTGTG+TGG | - | chr4_3:6878468-6878487 | Msa0626830:intron | 30.0% | |
| GTAAAAGAAGTGATGAAGTA+TGG | - | chr4_3:6878491-6878510 | Msa0626830:intron | 30.0% | |
| TCGCCAATATTGCATTAATA+TGG | - | chr4_3:6878707-6878726 | Msa0626830:intron | 30.0% | |
| ATTAATATGGAGAGACTTGA+AGG | - | chr4_3:6878720-6878739 | Msa0626830:intron | 30.0% | |
| TTAATATGGAGAGACTTGAA+GGG | - | chr4_3:6878721-6878740 | Msa0626830:intron | 30.0% | |
| ATGGTTACACTATTGCATTT+GGG | - | chr4_3:6879159-6879178 | Msa0626830:intron | 30.0% | |
| !! | TTTAACAGGGTATTGAAACA+TGG | - | chr4_3:6879331-6879350 | Msa0626830:CDS | 30.0% |
| TTCTCAAGAATGATGTGAAT+TGG | - | chr4_3:6879432-6879451 | Msa0626830:intron | 30.0% | |
| AAACAACAGATAATGTGTCT+CGG | - | chr4_3:6879654-6879673 | Msa0626830:intron | 30.0% | |
| TTCTATTCAAGTATGGAAGA+AGG | + | chr4_3:6879838-6879857 | None:intergenic | 30.0% | |
| TAAGTACAGCTATCAATAGA+AGG | + | chr4_3:6880014-6880033 | None:intergenic | 30.0% | |
| TAATTGAAACCCAAGAAAAG+AGG | - | chr4_3:6880234-6880253 | Msa0626830:intron | 30.0% | |
| ! | ATACAAAAGCCTCTTTTCTT+GGG | + | chr4_3:6880246-6880265 | None:intergenic | 30.0% |
| ! | TATACAAAAGCCTCTTTTCT+TGG | + | chr4_3:6880247-6880266 | None:intergenic | 30.0% |
| ! | GAGATCAGATATACTCATTT+TGG | - | chr4_3:6880374-6880393 | Msa0626830:intron | 30.0% |
| TGTAATTGACACGATAAAGT+GGG | + | chr4_3:6880401-6880420 | None:intergenic | 30.0% | |
| TTGTAATTGACACGATAAAG+TGG | + | chr4_3:6880402-6880421 | None:intergenic | 30.0% | |
| GAACATGTAAAAACTAGTCA+CGG | - | chr4_3:6880439-6880458 | Msa0626830:CDS | 30.0% | |
| !! | GTATTATATTGATGGATTGC+AGG | - | chr4_3:6880785-6880804 | Msa0626830:intron | 30.0% |
| TAGAGTATGAGAATCTAGTT+GGG | - | chr4_3:6880850-6880869 | Msa0626830:intron | 30.0% | |
| ! | GATTTTTATCCCTGAATGAA+TGG | + | chr4_3:6880886-6880905 | None:intergenic | 30.0% |
| CCAATTAGAAGAACAATCTT+GGG | + | chr4_3:6881074-6881093 | None:intergenic | 30.0% | |
| TCCAATTAGAAGAACAATCT+TGG | + | chr4_3:6881075-6881094 | None:intergenic | 30.0% | |
| ! | AAGTTTATTCCCCAACCTTT+TGG | + | chr4_3:6877557-6877576 | None:intergenic | 35.0% |
| TGAATGTAACTAACCGAAAC+TGG | + | chr4_3:6877626-6877645 | None:intergenic | 35.0% | |
| TCAGAGGGATATAGTTCAAA+AGG | - | chr4_3:6878519-6878538 | Msa0626830:intron | 35.0% | |
| ATGCTGTAAAATTCTCACCA+TGG | - | chr4_3:6878550-6878569 | Msa0626830:intron | 35.0% | |
| TGCTGTAAAATTCTCACCAT+GGG | - | chr4_3:6878551-6878570 | Msa0626830:intron | 35.0% | |
| TACAGCTATACCCTATGAAA+GGG | + | chr4_3:6878657-6878676 | None:intergenic | 35.0% | |
| ATACAGCTATACCCTATGAA+AGG | + | chr4_3:6878658-6878677 | None:intergenic | 35.0% | |
| !!! | GGATGTTGCTTTTAGAATCT+TGG | - | chr4_3:6878815-6878834 | Msa0626830:intron | 35.0% |
| ATAAACAGAGTTAAGCAGAG+AGG | - | chr4_3:6878843-6878862 | Msa0626830:CDS | 35.0% | |
| TAAACAGAGTTAAGCAGAGA+GGG | - | chr4_3:6878844-6878863 | Msa0626830:CDS | 35.0% | |
| AACCCAAACATGTTGAATGT+TGG | - | chr4_3:6878927-6878946 | Msa0626830:intron | 35.0% | |
| TGCCAACATTCAACATGTTT+GGG | + | chr4_3:6878932-6878951 | None:intergenic | 35.0% | |
| TTGCCAACATTCAACATGTT+TGG | + | chr4_3:6878933-6878952 | None:intergenic | 35.0% | |
| TTGATAGGTTATGGAGAAGA+TGG | - | chr4_3:6879077-6879096 | Msa0626830:CDS | 35.0% | |
| GAGTTTCCAAGATGATTCAA+TGG | - | chr4_3:6879136-6879155 | Msa0626830:CDS | 35.0% | |
| TTCCAAGATGATTCAATGGA+TGG | - | chr4_3:6879140-6879159 | Msa0626830:CDS | 35.0% | |
| AACCATCCATTGAATCATCT+TGG | + | chr4_3:6879145-6879164 | None:intergenic | 35.0% | |
| GATGGTTACACTATTGCATT+TGG | - | chr4_3:6879158-6879177 | Msa0626830:intron | 35.0% | |
| ! | ACACTATTGCATTTGGGATA+AGG | - | chr4_3:6879165-6879184 | Msa0626830:intron | 35.0% |
| AAGTTCTTAGTGAAGCTCAT+AGG | - | chr4_3:6879207-6879226 | Msa0626830:intron | 35.0% | |
| ! | GAATGATGTGAATTGGTGTT+TGG | - | chr4_3:6879439-6879458 | Msa0626830:intron | 35.0% |
| AACAACAGATAATGTGTCTC+GGG | - | chr4_3:6879655-6879674 | Msa0626830:intron | 35.0% | |
| !! | TTGCTTATCGCTTGTTTCTA+AGG | + | chr4_3:6879712-6879731 | None:intergenic | 35.0% |
| !! | ACTCTCAACTAAGTACTGAT+AGG | + | chr4_3:6879960-6879979 | None:intergenic | 35.0% |
| !! | AGTACTTAGTTGAGAGTATC+CGG | - | chr4_3:6879963-6879982 | Msa0626830:intron | 35.0% |
| ! | AGAAGGAATTGATAACCTGT+GGG | + | chr4_3:6879997-6880016 | None:intergenic | 35.0% |
| ! | TAGAAGGAATTGATAACCTG+TGG | + | chr4_3:6879998-6880017 | None:intergenic | 35.0% |
| CATCTTGTAGAAGGATCTAT+AGG | + | chr4_3:6880096-6880115 | None:intergenic | 35.0% | |
| GATGGTCATTATCAACCAAT+TGG | + | chr4_3:6880195-6880214 | None:intergenic | 35.0% | |
| TTGGCAATGTCGATATTGTT+AGG | - | chr4_3:6880481-6880500 | Msa0626830:CDS | 35.0% | |
| GATTCTCATACTCTACTTTC+TGG | + | chr4_3:6880845-6880864 | None:intergenic | 35.0% | |
| GTAGAGTATGAGAATCTAGT+TGG | - | chr4_3:6880849-6880868 | Msa0626830:intron | 35.0% | |
| AGAGTATGAGAATCTAGTTG+GGG | - | chr4_3:6880851-6880870 | Msa0626830:intron | 35.0% | |
| TAGATACGAGTTTGTGAGAA+TGG | - | chr4_3:6881003-6881022 | Msa0626830:five_prime_UTR | 35.0% | |
| CCCAAGATTGTTCTTCTAAT+TGG | - | chr4_3:6881071-6881090 | Msa0626830:intron | 35.0% | |
| AAGCAATTCTTACCTGAACC+AGG | + | chr4_3:6877253-6877272 | None:intergenic | 40.0% | |
| TGGTTCAGGTAAGAATTGCT+TGG | - | chr4_3:6877252-6877271 | Msa0626830:three_prime_UTR | 40.0% | |
| !!! | TCGGTCACATTAGTTTTGCT+TGG | - | chr4_3:6877347-6877366 | Msa0626830:CDS | 40.0% |
| !! | TTGCTTGGTTTGTGACAGTT+TGG | - | chr4_3:6877362-6877381 | Msa0626830:CDS | 40.0% |
| ! | CTTTGGGAATAGTCACCAAA+AGG | - | chr4_3:6877539-6877558 | Msa0626830:intron | 40.0% |
| GGAATAGTCACCAAAAGGTT+GGG | - | chr4_3:6877544-6877563 | Msa0626830:intron | 40.0% | |
| GAATAGTCACCAAAAGGTTG+GGG | - | chr4_3:6877545-6877564 | Msa0626830:intron | 40.0% | |
| ATGTAACTAACCGAAACTGG+TGG | + | chr4_3:6877623-6877642 | None:intergenic | 40.0% | |
| TCAATTTCACAATGCTCCAC+AGG | + | chr4_3:6877685-6877704 | None:intergenic | 40.0% | |
| TGCATAGACTGTGGAAAGAA+AGG | - | chr4_3:6877840-6877859 | Msa0626830:intron | 40.0% | |
| AGATTTGTCCTATGTTGCAC+CGG | - | chr4_3:6877918-6877937 | Msa0626830:intron | 40.0% | |
| GTCATGTTTGTATCCTACAC+CGG | + | chr4_3:6877940-6877959 | None:intergenic | 40.0% | |
| !! | TGTCCGTGTTAGTTCTGTAT+AGG | - | chr4_3:6878032-6878051 | Msa0626830:intron | 40.0% |
| ! | TCCATGTTGAATCCTTTTCC+TGG | - | chr4_3:6878100-6878119 | Msa0626830:intron | 40.0% |
| TCCAGGAAAAGGATTCAACA+TGG | + | chr4_3:6878104-6878123 | None:intergenic | 40.0% | |
| AGATGCTTCATTCCAGGAAA+AGG | + | chr4_3:6878115-6878134 | None:intergenic | 40.0% | |
| ACATCAAGATGCTTCATTCC+AGG | + | chr4_3:6878121-6878140 | None:intergenic | 40.0% | |
| ! | TGGAATGAAGCATCTTGATG+TGG | - | chr4_3:6878120-6878139 | Msa0626830:intron | 40.0% |
| AGAAGTGATGAAGTATGGAC+TGG | - | chr4_3:6878496-6878515 | Msa0626830:intron | 40.0% | |
| GCTGTAAAATTCTCACCATG+GGG | - | chr4_3:6878552-6878571 | Msa0626830:intron | 40.0% | |
| AAGTGGTTCCAACCTTTCAT+TGG | + | chr4_3:6878582-6878601 | None:intergenic | 40.0% | |
| ATGAAAGGGACTGTATGACT+AGG | + | chr4_3:6878643-6878662 | None:intergenic | 40.0% | |
| AGTCATACAGTCCCTTTCAT+AGG | - | chr4_3:6878643-6878662 | Msa0626830:intron | 40.0% | |
| GTCATACAGTCCCTTTCATA+GGG | - | chr4_3:6878644-6878663 | Msa0626830:intron | 40.0% | |
| !! | CGGTTTTATCGATGTTCTAG+AGG | - | chr4_3:6878875-6878894 | Msa0626830:CDS | 40.0% |
| TGTTGAATGTTGGCAAACAG+CGG | - | chr4_3:6878937-6878956 | Msa0626830:intron | 40.0% | |
| ATTACTTCGAGCTTTCGTGA+AGG | - | chr4_3:6879001-6879020 | Msa0626830:intron | 40.0% | |
| ! | AGAAGATGGTTCCCTTGTTT+GGG | - | chr4_3:6879091-6879110 | Msa0626830:CDS | 40.0% |
| TCTTAGTGAAGCTCATAGGT+TGG | - | chr4_3:6879211-6879230 | Msa0626830:intron | 40.0% | |
| !! | AACAGGGTATTGAAACATGG+CGG | - | chr4_3:6879334-6879353 | Msa0626830:CDS | 40.0% |
| GACTAACATGGCTTAGTTCA+AGG | + | chr4_3:6879372-6879391 | None:intergenic | 40.0% | |
| ACAACAGATAATGTGTCTCG+GGG | - | chr4_3:6879656-6879675 | Msa0626830:intron | 40.0% | |
| ! | AAAGCGCTAGAGAATTGTGT+GGG | - | chr4_3:6879730-6879749 | Msa0626830:intron | 40.0% |
| ! | GGTTCACGAGTTAATTTGGT+TGG | + | chr4_3:6879791-6879810 | None:intergenic | 40.0% |
| ACGTGGTTCACGAGTTAATT+TGG | + | chr4_3:6879795-6879814 | None:intergenic | 40.0% | |
| TGATTCTATGGCACTTTACG+TGG | + | chr4_3:6879812-6879831 | None:intergenic | 40.0% | |
| GGAAGAAGGCTATGATTCTA+TGG | + | chr4_3:6879824-6879843 | None:intergenic | 40.0% | |
| TGTTACTCTTCTTCTCTTGC+AGG | - | chr4_3:6879870-6879889 | Msa0626830:intron | 40.0% | |
| TTCTCAGTTATTCCACGCAT+AGG | - | chr4_3:6879908-6879927 | Msa0626830:intron | 40.0% | |
| ! | AAGGAATTGATAACCTGTGG+GGG | + | chr4_3:6879995-6880014 | None:intergenic | 40.0% |
| ! | GAAGGAATTGATAACCTGTG+GGG | + | chr4_3:6879996-6880015 | None:intergenic | 40.0% |
| CTTGAAAGAAAAGGGTAGTC+AGG | - | chr4_3:6880051-6880070 | Msa0626830:intron | 40.0% | |
| TCTATAGGTCTGTTCAGGAA+TGG | + | chr4_3:6880081-6880100 | None:intergenic | 40.0% | |
| AAGGATCTATAGGTCTGTTC+AGG | + | chr4_3:6880086-6880105 | None:intergenic | 40.0% | |
| AGATCCTTCTACAAGATGTC+CGG | - | chr4_3:6880098-6880117 | Msa0626830:CDS | 40.0% | |
| ! | GTGAATAAAAGCGTAGAGTG+AGG | - | chr4_3:6880160-6880179 | Msa0626830:intron | 40.0% |
| TCTGATCTCAACATTGTCTG+CGG | + | chr4_3:6880363-6880382 | None:intergenic | 40.0% | |
| TCGACATTGCCAATTAAGCT+AGG | + | chr4_3:6880474-6880493 | None:intergenic | 40.0% | |
| CAATGTCGATATTGTTAGGC+TGG | - | chr4_3:6880485-6880504 | Msa0626830:CDS | 40.0% | |
| CTGAAACTCACATAACTGTG+AGG | + | chr4_3:6880539-6880558 | None:intergenic | 40.0% | |
| CTCACAGTTATGTGAGTTTC+AGG | - | chr4_3:6880537-6880556 | Msa0626830:intron | 40.0% | |
| ACAGTTATGTGAGTTTCAGG+TGG | - | chr4_3:6880540-6880559 | Msa0626830:intron | 40.0% | |
| AAATGTCAAGAAAGCCGTGA+CGG | - | chr4_3:6880737-6880756 | Msa0626830:intron | 40.0% | |
| CATCAATGATTGCTGATGCA+GGG | - | chr4_3:6880817-6880836 | Msa0626830:intron | 40.0% | |
| GAGTATGAGAATCTAGTTGG+GGG | - | chr4_3:6880852-6880871 | Msa0626830:intron | 40.0% | |
| CTCACAAACTCGTATCTACT+AGG | + | chr4_3:6881001-6881020 | None:intergenic | 40.0% | |
| GAGTGTATGGTCTCAGCTAA+TGG | + | chr4_3:6877136-6877155 | None:intergenic | 45.0% | |
| GAGAGAAGAAGAGAGAAGAG+AGG | + | chr4_3:6877213-6877232 | None:intergenic | 45.0% | |
| GGGAATAGTCACCAAAAGGT+TGG | - | chr4_3:6877543-6877562 | Msa0626830:intron | 45.0% | |
| CTGGAAGTGGAACATAATGC+TGG | + | chr4_3:6877583-6877602 | None:intergenic | 45.0% | |
| CAGCATTATGTTCCACTTCC+AGG | - | chr4_3:6877581-6877600 | Msa0626830:intron | 45.0% | |
| AGAATGTAGAAGCCTGGAAG+TGG | + | chr4_3:6877596-6877615 | None:intergenic | 45.0% | |
| ! | ATGAAGCATCTTGATGTGGC+TGG | - | chr4_3:6878124-6878143 | Msa0626830:intron | 45.0% |
| !! | ATGAAGTATGGACTGGTCAG+AGG | - | chr4_3:6878503-6878522 | Msa0626830:intron | 45.0% |
| !! | TGAAGTATGGACTGGTCAGA+GGG | - | chr4_3:6878504-6878523 | Msa0626830:intron | 45.0% |
| GTAAAATTCTCACCATGGGG+AGG | - | chr4_3:6878555-6878574 | Msa0626830:intron | 45.0% | |
| AAAGGTTGGAACCACTTGTG+AGG | - | chr4_3:6878585-6878604 | Msa0626830:intron | 45.0% | |
| AAGGTTGGAACCACTTGTGA+GGG | - | chr4_3:6878586-6878605 | Msa0626830:intron | 45.0% | |
| GTTGAATGTTGGCAAACAGC+GGG | - | chr4_3:6878938-6878957 | Msa0626830:intron | 45.0% | |
| GAGAAGATGGTTCCCTTGTT+TGG | - | chr4_3:6879090-6879109 | Msa0626830:CDS | 45.0% | |
| ATTTCCCTCCACCCAAACAA+GGG | + | chr4_3:6879105-6879124 | None:intergenic | 45.0% | |
| CATGGCTTAGTTCAAGGCAT+AGG | + | chr4_3:6879366-6879385 | None:intergenic | 45.0% | |
| CAACAGATAATGTGTCTCGG+GGG | - | chr4_3:6879657-6879676 | Msa0626830:intron | 45.0% | |
| ! | CAAAGCGCTAGAGAATTGTG+TGG | - | chr4_3:6879729-6879748 | Msa0626830:intron | 45.0% |
| GCTAGAGAATTGTGTGGGAA+AGG | - | chr4_3:6879735-6879754 | Msa0626830:intron | 45.0% | |
| TATTCCACGCATAGGAGAGA+TGG | - | chr4_3:6879916-6879935 | Msa0626830:intron | 45.0% | |
| GTATCCGGACATCTTGTAGA+AGG | + | chr4_3:6880105-6880124 | None:intergenic | 45.0% | |
| GCAGTGAACTGAACTGTATC+CGG | + | chr4_3:6880120-6880139 | None:intergenic | 45.0% | |
| AAAGCGTAGAGTGAGGAAGA+TGG | - | chr4_3:6880167-6880186 | Msa0626830:intron | 45.0% | |
| AAGCGTAGAGTGAGGAAGAT+GGG | - | chr4_3:6880168-6880187 | Msa0626830:intron | 45.0% | |
| ACAGCTGAATGTGGAAGACT+GGG | + | chr4_3:6880287-6880306 | None:intergenic | 45.0% | |
| TACAGCTGAATGTGGAAGAC+TGG | + | chr4_3:6880288-6880307 | None:intergenic | 45.0% | |
| CTTCCACATTCAGCTGTAAG+AGG | - | chr4_3:6880290-6880309 | Msa0626830:intron | 45.0% | |
| CTTCCTCTTACAGCTGAATG+TGG | + | chr4_3:6880296-6880315 | None:intergenic | 45.0% | |
| CACATTCAGCTGTAAGAGGA+AGG | - | chr4_3:6880294-6880313 | Msa0626830:intron | 45.0% | |
| AAAACTAGTCACGGTCCGTA+AGG | - | chr4_3:6880448-6880467 | Msa0626830:CDS | 45.0% | |
| TCCGTAAGGCCTAGCTTAAT+TGG | - | chr4_3:6880462-6880481 | Msa0626830:CDS | 45.0% | |
| GCCAATTAAGCTAGGCCTTA+CGG | + | chr4_3:6880466-6880485 | None:intergenic | 45.0% | |
| TTAGGCTGGACATCTTCATC+CGG | - | chr4_3:6880499-6880518 | Msa0626830:intron | 45.0% | |
| CACGGCTTTCTTGACATTTG+AGG | + | chr4_3:6880736-6880755 | None:intergenic | 45.0% | |
| AATGTCAAGAAAGCCGTGAC+GGG | - | chr4_3:6880738-6880757 | Msa0626830:intron | 45.0% | |
| GCATCAATGATTGCTGATGC+AGG | - | chr4_3:6880816-6880835 | Msa0626830:intron | 45.0% | |
| GAGTGGTTGCCATTCATTCA+GGG | - | chr4_3:6880874-6880893 | Msa0626830:intron | 45.0% | |
| !! | AATATAAATTATTTATAGAA+TGG | + | chr4_3:6877880-6877899 | None:intergenic | 5.0% |
| !! | AATTAAAAATTTAAGTAAAT+TGG | - | chr4_3:6878439-6878458 | Msa0626830:intron | 5.0% |
| ! | GGTGGCGAACAAAGAGTGTA+TGG | + | chr4_3:6877149-6877168 | None:intergenic | 50.0% |
| GTGTGTGTGTGTTTGCCACA+CGG | + | chr4_3:6877185-6877204 | None:intergenic | 50.0% | |
| CATTCTCACGCCACCAGTTT+CGG | - | chr4_3:6877610-6877629 | Msa0626830:intron | 50.0% | |
| ! | CGAAGAAGAAAAGGCACGCA+TGG | - | chr4_3:6877751-6877770 | Msa0626830:intron | 50.0% |
| ! | GAAGAAAAGGCACGCATGGT+TGG | - | chr4_3:6877755-6877774 | Msa0626830:intron | 50.0% |
| ATCCTACACCGGTGCAACAT+AGG | + | chr4_3:6877929-6877948 | None:intergenic | 50.0% | |
| AAGCATCTTGATGTGGCTGG+TGG | - | chr4_3:6878127-6878146 | Msa0626830:intron | 50.0% | |
| AGTCTAGAGACCCTCACAAG+TGG | + | chr4_3:6878599-6878618 | None:intergenic | 50.0% | |
| GGACTGTATGACTAGGACGA+TGG | + | chr4_3:6878636-6878655 | None:intergenic | 50.0% | |
| AAGCAGAGAGGGCTTCAAGA+CGG | - | chr4_3:6878855-6878874 | Msa0626830:CDS | 50.0% | |
| ! | AGATGGTTCCCTTGTTTGGG+TGG | - | chr4_3:6879094-6879113 | Msa0626830:CDS | 50.0% |
| CATTTCCCTCCACCCAAACA+AGG | + | chr4_3:6879106-6879125 | None:intergenic | 50.0% | |
| GTGAGGAAGATGGGTCCAAT+TGG | - | chr4_3:6880177-6880196 | Msa0626830:intron | 50.0% | |
| CAGCTGAATGTGGAAGACTG+GGG | + | chr4_3:6880286-6880305 | None:intergenic | 50.0% | |
| TAGGCTGGACATCTTCATCC+GGG | - | chr4_3:6880500-6880519 | Msa0626830:intron | 50.0% | |
| TCTTCATCCGGGTTCAAACC+CGG | - | chr4_3:6880511-6880530 | Msa0626830:intron | 50.0% | |
| TCACATAACTGTGAGGTCCC+GGG | + | chr4_3:6880532-6880551 | None:intergenic | 50.0% | |
| CTCACATAACTGTGAGGTCC+CGG | + | chr4_3:6880533-6880552 | None:intergenic | 50.0% | |
| CAGAAAAGGGTAACCCGTCA+CGG | + | chr4_3:6880754-6880773 | None:intergenic | 50.0% | |
| TGAGAATCTAGTTGGGGGAG+TGG | - | chr4_3:6880857-6880876 | Msa0626830:intron | 50.0% | |
| GGAGTGGTTGCCATTCATTC+AGG | - | chr4_3:6880873-6880892 | Msa0626830:intron | 50.0% | |
| ! | TTGCCACACGGAAGCGTAGA+GGG | + | chr4_3:6877173-6877192 | None:intergenic | 55.0% |
| ! | TTTGCCACACGGAAGCGTAG+AGG | + | chr4_3:6877174-6877193 | None:intergenic | 55.0% |
| ACCAGGCGAGAAACGAGAGA+CGG | + | chr4_3:6877236-6877255 | None:intergenic | 55.0% | |
| TCTCGTTTCTCGCCTGGTTC+AGG | - | chr4_3:6877238-6877257 | Msa0626830:three_prime_UTR | 55.0% | |
| GGCGTGAGAATGTAGAAGCC+TGG | + | chr4_3:6877602-6877621 | None:intergenic | 55.0% | |
| GTGCTGGGTTGCATAGACTG+TGG | - | chr4_3:6877831-6877850 | Msa0626830:intron | 55.0% | |
| ! | GTCCTATGTTGCACCGGTGT+AGG | - | chr4_3:6877924-6877943 | Msa0626830:intron | 55.0% |
| CCTTTCATTGGACCTCCCCA+TGG | + | chr4_3:6878570-6878589 | None:intergenic | 55.0% | |
| CCATGGGGAGGTCCAATGAA+AGG | - | chr4_3:6878567-6878586 | Msa0626830:intron | 55.0% | |
| GGGGAGGTCCAATGAAAGGT+TGG | - | chr4_3:6878571-6878590 | Msa0626830:intron | 55.0% | |
| !! | AAACAGCGGGCTGCCGAAAA+AGG | - | chr4_3:6878951-6878970 | Msa0626830:intron | 55.0% |
| ! | TGGTTCCCTTGTTTGGGTGG+AGG | - | chr4_3:6879097-6879116 | Msa0626830:CDS | 55.0% |
| ! | GGTTCCCTTGTTTGGGTGGA+GGG | - | chr4_3:6879098-6879117 | Msa0626830:CDS | 55.0% |
| !! | GGGTATTGAAACATGGCGGC+AGG | - | chr4_3:6879338-6879357 | Msa0626830:CDS | 55.0% |
| GCAACCATCTCTCCTATGCG+TGG | + | chr4_3:6879923-6879942 | None:intergenic | 55.0% | |
| CGCATAGGAGAGATGGTTGC+TGG | - | chr4_3:6879923-6879942 | Msa0626830:intron | 55.0% | |
| TAACCTGTGGGGGAAAACGC+CGG | + | chr4_3:6879985-6880004 | None:intergenic | 55.0% | |
| CTTCATCCGGGTTCAAACCC+GGG | - | chr4_3:6880512-6880531 | Msa0626830:intron | 55.0% | |
| CCAGGCGAGAAACGAGAGAC+GGG | + | chr4_3:6877235-6877254 | None:intergenic | 60.0% | |
| CTTGATGTGGCTGGTGGCAC+AGG | - | chr4_3:6878133-6878152 | Msa0626830:intron | 60.0% | |
| ! | TATCCGGCGTTTTCCCCCAC+AGG | - | chr4_3:6879979-6879998 | Msa0626830:intron | 60.0% |
| TGAGGTCCCGGGTTTGAACC+CGG | + | chr4_3:6880521-6880540 | None:intergenic | 60.0% | |
| ! | CCACACGGAAGCGTAGAGGG+CGG | + | chr4_3:6877170-6877189 | None:intergenic | 65.0% |
| CCCGTCTCTCGTTTCTCGCC+TGG | - | chr4_3:6877232-6877251 | Msa0626830:three_prime_UTR | 65.0% | |
| ! | CACGGAAGCGTAGAGGGCGG+TGG | + | chr4_3:6877167-6877186 | None:intergenic | 70.0% |
| CCGCCCTCTACGCTTCCGTG+TGG | - | chr4_3:6877167-6877186 | Msa0626830:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 6877101 | 6881142 | 6877101 | ID=Msa0626830;Name=Msa0626830 |
| chr4_3 | mRNA | 6877101 | 6881142 | 6877101 | ID=Msa0626830-mRNA-1;Parent=Msa0626830;Name=Msa0626830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155|1|1|1|0.77|0.7|10|234|290 |
| chr4_3 | exon | 6877101 | 6877436 | 6877101 | ID=Msa0626830-mRNA-1:exon:1965;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6878243 | 6878351 | 6878243 | ID=Msa0626830-mRNA-1:exon:1964;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6878833 | 6878904 | 6878833 | ID=Msa0626830-mRNA-1:exon:1963;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6879015 | 6879159 | 6879015 | ID=Msa0626830-mRNA-1:exon:1962;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6879271 | 6879429 | 6879271 | ID=Msa0626830-mRNA-1:exon:1961;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6880089 | 6880150 | 6880089 | ID=Msa0626830-mRNA-1:exon:1960;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6880382 | 6880508 | 6880382 | ID=Msa0626830-mRNA-1:exon:1959;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6880612 | 6880727 | 6880612 | ID=Msa0626830-mRNA-1:exon:1958;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6880984 | 6881076 | 6880984 | ID=Msa0626830-mRNA-1:exon:1957;Parent=Msa0626830-mRNA-1 |
| chr4_3 | exon | 6881100 | 6881142 | 6881100 | ID=Msa0626830-mRNA-1:exon:1956;Parent=Msa0626830-mRNA-1 |
| chr4_3 | five_prime_UTR | 6881100 | 6881142 | 6881100 | ID=Msa0626830-mRNA-1:five_prime_utr;Parent=Msa0626830-mRNA-1 |
| chr4_3 | five_prime_UTR | 6880984 | 6881076 | 6880984 | ID=Msa0626830-mRNA-1:five_prime_utr;Parent=Msa0626830-mRNA-1 |
| chr4_3 | five_prime_UTR | 6880709 | 6880727 | 6880709 | ID=Msa0626830-mRNA-1:five_prime_utr;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6880612 | 6880708 | 6880612 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6880382 | 6880508 | 6880382 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6880089 | 6880150 | 6880089 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6879271 | 6879429 | 6879271 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6879015 | 6879159 | 6879015 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6878833 | 6878904 | 6878833 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6878243 | 6878351 | 6878243 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | CDS | 6877335 | 6877436 | 6877335 | ID=Msa0626830-mRNA-1:cds;Parent=Msa0626830-mRNA-1 |
| chr4_3 | three_prime_UTR | 6877101 | 6877334 | 6877101 | ID=Msa0626830-mRNA-1:three_prime_utr;Parent=Msa0626830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
