AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554800 MtrunA17_Chr4g0040541 95.775 284 12 0 1 284 1 284 0.0 571
Msa0554800 MtrunA17_Chr2g0324961 79.211 279 52 4 1 277 1 275 3.30e-151 424
Msa0554800 MtrunA17_Chr4g0046431 66.790 271 76 7 13 277 32 294 4.24e-119 344
Msa0554800 MtrunA17_Chr2g0282871 59.790 286 96 8 1 274 1 279 1.43e-110 322
Msa0554800 MtrunA17_Chr8g0367761 73.239 213 50 4 13 220 32 242 9.34e-107 310
Msa0554800 MtrunA17_Chr8g0389661 73.333 195 41 4 26 214 30 219 1.80e-93 284
Msa0554800 MtrunA17_Chr5g0422431 55.330 197 83 2 19 215 32 223 6.71e-69 220
Msa0554800 MtrunA17_Chr1g0198751 56.250 192 79 2 24 215 37 223 4.52e-68 219
Msa0554800 MtrunA17_Chr7g0227071 54.054 185 82 1 24 208 34 215 7.03e-64 208
Msa0554800 MtrunA17_Chr1g0198741 55.752 113 49 1 103 215 7 118 4.88e-33 122
Msa0554800 MtrunA17_Chr3g0091921 28.512 242 144 6 48 282 16 235 3.82e-16 77.0
Msa0554800 MtrunA17_Chr1g0147421 33.333 165 87 7 48 206 27 174 1.88e-15 75.5
Msa0554800 MtrunA17_Chr7g0217711 32.432 148 82 4 43 189 14 144 2.89e-15 72.4
Msa0554800 MtrunA17_Chr7g0217721 29.500 200 98 7 50 229 21 197 5.38e-15 74.3
Msa0554800 MtrunA17_Chr6g0453451 34.722 144 74 5 48 189 20 145 1.27e-14 72.8
Msa0554800 MtrunA17_Chr4g0060931 33.333 144 76 5 48 189 17 142 8.93e-14 70.5
Msa0554800 MtrunA17_Chr7g0214071 32.653 147 76 7 48 191 15 141 1.95e-13 68.6
Msa0554800 MtrunA17_Chr5g0405211 29.885 174 81 8 48 206 8 155 3.30e-13 68.9
Msa0554800 MtrunA17_Chr3g0124761 28.641 206 105 8 48 246 7 177 4.87e-13 67.8
Msa0554800 MtrunA17_Chr5g0400461 30.769 169 89 8 48 205 6 157 5.73e-13 68.2
Msa0554800 MtrunA17_Chr3g0128151 28.395 162 88 6 33 187 7 147 2.79e-12 66.6
Msa0554800 MtrunA17_Chr8g0384721 31.034 145 81 5 48 191 7 133 4.59e-12 65.1
Msa0554800 MtrunA17_Chr8g0359921 31.469 143 80 4 48 189 14 139 6.73e-12 65.1
Msa0554800 MtrunA17_Chr3g0144271 33.557 149 78 6 47 191 22 153 8.40e-12 65.1
Msa0554800 MtrunA17_Chr2g0318101 32.237 152 81 7 46 193 13 146 1.18e-11 64.3
Msa0554800 MtrunA17_Chr8g0385991 30.000 150 83 7 43 189 9 139 1.59e-11 62.8
Msa0554800 MtrunA17_Chr5g0398971 29.714 175 94 8 42 206 1 156 1.74e-11 63.9
Msa0554800 MtrunA17_Chr3g0109821 33.766 154 76 8 47 195 5 137 4.58e-11 63.2
Msa0554800 MtrunA17_Chr2g0318081 32.639 144 77 5 48 189 16 141 5.27e-11 62.4
Msa0554800 MtrunA17_Chr3g0092671 32.121 165 84 8 51 206 8 153 6.30e-11 62.8
Msa0554800 MtrunA17_Chr7g0263931 32.877 146 76 7 48 189 11 138 7.08e-11 62.0
Msa0554800 MtrunA17_Chr2g0312321 26.000 250 129 12 48 284 11 217 7.34e-11 61.6
Msa0554800 MtrunA17_Chr1g0183741 29.480 173 99 8 41 208 2 156 8.05e-11 61.2
Msa0554800 MtrunA17_Chr8g0364791 28.571 175 99 7 45 211 3 159 8.27e-11 62.0
Msa0554800 MtrunA17_Chr4g0017921 29.448 163 97 6 47 206 7 154 9.20e-11 61.6
Msa0554800 MtrunA17_Chr8g0345701 30.952 168 88 7 47 200 6 159 9.29e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554800 AT4G28500.1 78.680 197 41 1 21 217 33 228 2.69e-113 329
Msa0554800 AT1G28470.1 78.462 195 39 2 23 215 50 243 9.77e-108 315
Msa0554800 AT4G29230.3 69.802 202 49 2 24 218 29 225 1.27e-96 291
Msa0554800 AT4G29230.1 69.802 202 49 2 24 218 29 225 5.89e-96 291
Msa0554800 AT4G29230.2 69.307 202 49 2 24 218 29 224 4.71e-95 289
Msa0554800 AT5G56620.3 64.532 203 58 4 26 218 25 223 3.97e-88 269
Msa0554800 AT5G56620.2 64.532 203 58 4 26 218 25 223 5.02e-88 268
Msa0554800 AT5G56620.1 64.532 203 58 4 26 218 25 223 9.63e-88 267
Msa0554800 AT1G25580.1 57.368 190 70 4 24 213 37 215 7.33e-66 213
Msa0554800 AT5G14490.2 50.000 188 89 3 26 213 36 218 8.68e-54 176
Msa0554800 AT5G14490.4 50.000 188 89 3 26 213 36 218 2.49e-53 177
Msa0554800 AT5G14490.1 50.000 188 89 3 26 213 39 221 2.69e-53 177
Msa0554800 AT5G14490.3 50.000 188 89 3 26 213 39 221 3.22e-53 177
Msa0554800 AT3G01600.1 45.972 211 98 4 15 210 7 216 7.67e-50 169
Msa0554800 AT3G04060.1 32.222 180 97 6 40 211 12 174 5.66e-16 77.4
Msa0554800 AT5G18270.2 33.333 180 93 7 41 211 14 175 2.16e-15 75.5
Msa0554800 AT5G18270.1 33.333 180 93 7 41 211 14 175 3.59e-15 75.1
Msa0554800 AT5G61430.1 34.965 143 75 5 48 189 16 141 5.63e-15 74.3
Msa0554800 AT4G36160.1 33.333 168 85 7 47 206 9 157 3.37e-14 72.4
Msa0554800 AT4G36160.3 33.333 168 85 7 47 206 9 157 3.37e-14 72.4
Msa0554800 AT4G36160.2 33.333 168 85 7 47 206 13 161 3.77e-14 72.4
Msa0554800 AT1G02230.1 32.022 178 93 8 49 218 4 161 4.88e-14 72.0
Msa0554800 AT5G53950.1 31.959 194 97 9 37 218 9 179 6.66e-14 71.6
Msa0554800 AT1G01720.1 32.000 150 83 5 42 190 1 132 1.12e-13 70.1
Msa0554800 AT2G18060.3 29.714 175 82 8 47 206 8 156 1.24e-13 70.9
Msa0554800 AT2G18060.1 29.714 175 82 8 47 206 8 156 1.24e-13 70.9
Msa0554800 AT5G07680.2 30.769 169 93 5 48 209 3 154 1.41e-13 70.1
Msa0554800 AT5G07680.1 30.769 169 93 5 48 209 17 168 1.60e-13 70.1
Msa0554800 AT5G04410.1 30.000 170 93 6 48 209 9 160 4.16e-13 69.7
Msa0554800 AT1G12260.1 30.058 173 94 8 42 206 1 154 6.18e-13 68.9
Msa0554800 AT1G12260.2 30.058 173 94 8 42 206 1 154 6.67e-13 68.6
Msa0554800 AT2G33480.2 30.488 164 91 7 48 208 15 158 1.35e-12 66.6
Msa0554800 AT2G33480.1 31.544 149 81 6 48 195 15 143 1.40e-12 66.6
Msa0554800 AT5G46590.1 29.697 165 94 7 48 205 6 155 1.48e-12 67.0
Msa0554800 AT5G08790.1 31.944 144 79 5 48 190 7 132 1.90e-12 66.6
Msa0554800 AT5G46590.2 31.081 148 85 6 48 193 6 138 4.87e-12 65.5
Msa0554800 AT1G02220.1 32.867 143 75 6 49 188 4 128 5.09e-12 65.9
Msa0554800 AT1G62700.1 29.480 173 95 7 42 206 1 154 1.23e-11 65.1
Msa0554800 AT1G62700.2 29.480 173 95 7 42 206 1 154 1.23e-11 65.1
Msa0554800 AT1G65910.1 32.075 159 81 9 48 199 6 144 1.28e-11 65.1
Msa0554800 AT5G13180.1 33.562 146 72 8 48 189 14 138 2.96e-11 62.8
Msa0554800 AT1G76420.1 29.834 181 94 8 47 216 21 179 4.55e-11 62.8
Msa0554800 AT4G17980.2 32.432 148 76 7 48 189 6 135 7.55e-11 62.0
Msa0554800 AT4G10350.1 28.402 169 94 6 47 206 8 158 9.59e-11 62.0
Msa0554800 AT2G46770.1 27.488 211 128 6 42 245 10 202 9.60e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTCTCATTTCACTAAT+TGG 0.156652 4_1:+52523940 Msa0554800:three_prime_UTR
CAGTAGTTCAAGATTGCTTT+AGG 0.212119 4_1:-52523863 None:intergenic
ATTATGAAAGACTCTATTCT+TGG 0.244819 4_1:+52523251 Msa0554800:CDS
CCTACTCTTGAAGGAGAAAA+TGG 0.244985 4_1:+52519401 Msa0554800:CDS
AGAAAAGATATCTCTATAAA+TGG 0.286637 4_1:+52518756 Msa0554800:five_prime_UTR
GAAAATGGTGGGAAAGAATT+AGG 0.288485 4_1:+52523623 Msa0554800:three_prime_UTR
CTTGTACTTTACACAAACTA+TGG 0.313224 4_1:+52523086 Msa0554800:CDS
TTCATTTGAAAACTATACTA+TGG 0.315540 4_1:+52523655 Msa0554800:three_prime_UTR
TCAAGAGATTCTTGAACATT+TGG 0.316828 4_1:+52519322 Msa0554800:CDS
GAAAGGCAGAGAAAACAAAT+TGG 0.326530 4_1:+52523117 Msa0554800:CDS
TAAAACTTGCATGAAGAAAA+AGG 0.332017 4_1:-52523904 None:intergenic
TTTAATTAAGGACCTGATCT+TGG 0.351490 4_1:-52518915 None:intergenic
TATATACCTGGTAGTTTCTC+TGG 0.365477 4_1:-52519440 None:intergenic
GCTCTAGTTAGGATGGAAAA+TGG 0.378110 4_1:+52523608 Msa0554800:three_prime_UTR
CCATCCTAACTAGAGCATAT+AGG 0.392802 4_1:-52523601 None:intergenic
GGTGAAAGAAATGGCGGATC+AGG 0.399922 4_1:-52522917 None:intergenic
AGTAGTTCAAGATTGCTTTA+GGG 0.400028 4_1:-52523862 None:intergenic
ATTGAAGGGTAATTATTAAG+AGG 0.400064 4_1:+52523480 Msa0554800:three_prime_UTR
ATGTTAATCTTTACCAAGCA+TGG 0.413553 4_1:-52523814 None:intergenic
TTCACTCCAGCTGGCAATCC+AGG 0.423620 4_1:-52519284 None:intergenic
CACTTGAATCAAGGATTGAA+TGG 0.428533 4_1:-52523434 None:intergenic
AAATATTTCAGCAGTGTCAT+AGG 0.430428 4_1:+52523777 Msa0554800:three_prime_UTR
CATAGTTTGTGTAAAGTACA+AGG 0.433161 4_1:-52523085 None:intergenic
ATAACCTATATGCTCTAGTT+AGG 0.436331 4_1:+52523597 Msa0554800:three_prime_UTR
ATCATATATGTGCCCATGCT+TGG 0.437157 4_1:+52523801 Msa0554800:three_prime_UTR
GAGTTCATCCCTACTCTTGA+AGG 0.437508 4_1:+52519392 Msa0554800:CDS
GCTATAGAAGATTAAATTGA+AGG 0.437520 4_1:+52523465 Msa0554800:three_prime_UTR
TAAGAGGCCAATAATTGAAA+AGG 0.437585 4_1:+52523496 Msa0554800:three_prime_UTR
TGATCCGCCATTTCTTTCAC+CGG 0.439231 4_1:+52522919 Msa0554800:CDS
CTTGTCCACCACTTGAATCA+AGG 0.444328 4_1:-52523443 None:intergenic
TGTTCCTGTTGTGTATGCCT+TGG 0.446215 4_1:-52522946 None:intergenic
AACTTGGACTTGTTGTAGAC+TGG 0.446320 4_1:-52523044 None:intergenic
GAAACCCGTTGGCATAAAAC+AGG 0.460349 4_1:+52523011 Msa0554800:CDS
TCTTCAGGAGTAAGCAAAGA+TGG 0.468322 4_1:+52522894 Msa0554800:intron
CCATCCAAGGCATACACAAC+AGG 0.469431 4_1:+52522942 Msa0554800:CDS
CTCTATAAATGGAATGATTG+AGG 0.481258 4_1:+52518767 Msa0554800:five_prime_UTR
GAATTACCACCACACTGTCT+TGG 0.486516 4_1:-52523224 None:intergenic
TTGTGTATGCCTTGGATGGC+CGG 0.487616 4_1:-52522938 None:intergenic
GACTTACCTGGATTGCCAGC+TGG 0.488076 4_1:+52519278 Msa0554800:CDS
CTATTGCTATATAAAACAAA+TGG 0.490711 4_1:-52518709 None:intergenic
AATTTCATATCATTTGATCA+AGG 0.491183 4_1:+52523359 Msa0554800:CDS
TCTTGAACATTTGGAAGCAA+AGG 0.493075 4_1:+52519331 Msa0554800:CDS
AAAGGCAGAGAAAACAAATT+GGG 0.493263 4_1:+52523118 Msa0554800:CDS
GTGATGCATCAGTATCATCT+TGG 0.493893 4_1:+52523140 Msa0554800:CDS
CCTATATGCTCTAGTTAGGA+TGG 0.494711 4_1:+52523601 Msa0554800:three_prime_UTR
TTGAGTTTGATAGAAAACTT+TGG 0.497854 4_1:-52523201 None:intergenic
ATTTCATATCATTTGATCAA+GGG 0.503525 4_1:+52523360 Msa0554800:CDS
GAGCATTGCTAGATCTATGT+TGG 0.506944 4_1:-52523385 None:intergenic
TAATAAAAGTGATAGAGAAA+AGG 0.506987 4_1:-52518612 None:intergenic
TGATGCATCAGTATCATCTT+GGG 0.507024 4_1:+52523141 Msa0554800:CDS
TCATATCAAAGGCCAAGATC+AGG 0.512974 4_1:+52518903 Msa0554800:CDS
GGATCAAACTTCACTCCAGC+TGG 0.519384 4_1:-52519293 None:intergenic
CATTCAATCCTTGATTCAAG+TGG 0.522358 4_1:+52523435 Msa0554800:exon
AGAACGGTTGAGTTAAGAGA+GGG 0.522898 4_1:-52518658 None:intergenic
AATAATAGCATCACAGTGGA+TGG 0.523592 4_1:+52518838 Msa0554800:CDS
GGGATGAACTCATCAATTAG+AGG 0.528142 4_1:-52519380 None:intergenic
AAACTATGGAAAACAAAGAA+AGG 0.529627 4_1:+52523100 Msa0554800:CDS
TCAAGAATCTCTTGATCTGT+AGG 0.534425 4_1:-52519314 None:intergenic
TGGATGGCCGGTGAAAGAAA+TGG 0.540700 4_1:-52522926 None:intergenic
CATCACAGTGGATGGAAGAA+AGG 0.544845 4_1:+52518846 Msa0554800:CDS
GGTGGAATTAATGACTTACC+TGG 0.548384 4_1:+52519266 Msa0554800:CDS
TCAATCCTTGATTCAAGTGG+TGG 0.549183 4_1:+52523438 Msa0554800:exon
CCTGTTGTGTATGCCTTGGA+TGG 0.549971 4_1:-52522942 None:intergenic
TGTTAATCTTTACCAAGCAT+GGG 0.557790 4_1:-52523813 None:intergenic
TACAACAAGTCCAAGTTGAA+AGG 0.559431 4_1:+52523050 Msa0554800:CDS
AGTGATGAAGAAGAGAAAGA+AGG 0.559824 4_1:+52523164 Msa0554800:CDS
GGAACAGAAACTAAAAGAGA+AGG 0.560294 4_1:-52518688 None:intergenic
GAGAACGGTTGAGTTAAGAG+AGG 0.560818 4_1:-52518659 None:intergenic
TTTCTTTCACCGGCCATCCA+AGG 0.565155 4_1:+52522929 Msa0554800:CDS
GAAGGGTCAAAGTGGGAATG+AGG 0.565748 4_1:+52523283 Msa0554800:CDS
AAGAGAAGGGACAGAGAGAA+CGG 0.572639 4_1:-52518674 None:intergenic
AAACTATGAAGGGTCAAAGT+GGG 0.577178 4_1:+52523276 Msa0554800:CDS
AGTGGGAATGAGGTAATCAA+TGG 0.579023 4_1:+52523293 Msa0554800:CDS
GTACATTCGGATCACGAGGA+TGG 0.581610 4_1:+52522984 Msa0554800:CDS
TAGTTAGGATGGAAAATGGT+GGG 0.586910 4_1:+52523612 Msa0554800:three_prime_UTR
ACATGTGGTCATCATATCAA+AGG 0.587928 4_1:+52518892 Msa0554800:CDS
CTATAGAAGATTAAATTGAA+GGG 0.588583 4_1:+52523466 Msa0554800:three_prime_UTR
TGCAACTACTTGTTGAAGTG+TGG 0.591394 4_1:-52518548 None:intergenic
GAACAGAAACTAAAAGAGAA+GGG 0.591832 4_1:-52518687 None:intergenic
ACTCATCCAGAGAAACTACC+AGG 0.603901 4_1:+52519434 Msa0554800:CDS
AAAACTATGAAGGGTCAAAG+TGG 0.604850 4_1:+52523275 Msa0554800:CDS
TTCAACAAGTAGTTGCATGA+GGG 0.606047 4_1:+52518554 Msa0554800:five_prime_UTR
GGATGAACTCATCAATTAGA+GGG 0.619021 4_1:-52519379 None:intergenic
AACATTTGGAAGCAAAGGTG+AGG 0.627859 4_1:+52519336 Msa0554800:CDS
TCAACAAGTAGTTGCATGAG+GGG 0.632583 4_1:+52518555 Msa0554800:five_prime_UTR
GCAACTACTTGTTGAAGTGT+GGG 0.633027 4_1:-52518547 None:intergenic
ATTAGAACTTGTCTCACATG+TGG 0.635438 4_1:+52518877 Msa0554800:CDS
AGGATGGAAGCGAAACCCGT+TGG 0.639864 4_1:+52523000 Msa0554800:CDS
CTACTTGTTGAAGTGTGGGA+AGG 0.641423 4_1:-52518543 None:intergenic
CTAGTTAGGATGGAAAATGG+TGG 0.641734 4_1:+52523611 Msa0554800:three_prime_UTR
CTTCAACAAGTAGTTGCATG+AGG 0.652525 4_1:+52518553 Msa0554800:five_prime_UTR
CAAAGTATATATTAATACTG+AGG 0.662016 4_1:+52523526 Msa0554800:three_prime_UTR
AAAAGTACATTCGGATCACG+AGG 0.662681 4_1:+52522980 Msa0554800:CDS
TTGTTGAAGACTCAAGCGAG+AGG 0.675322 4_1:+52523716 Msa0554800:three_prime_UTR
AAACAATAATAGCATCACAG+TGG 0.704092 4_1:+52518834 Msa0554800:CDS
ATGGCCGGTGAAAGAAATGG+CGG 0.706386 4_1:-52522923 None:intergenic
CAAACTCAACCAAGACAGTG+TGG 0.711030 4_1:+52523215 Msa0554800:CDS
ACTCAACCAAGACAGTGTGG+TGG 0.739755 4_1:+52523218 Msa0554800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAATGAAAAATAATTA+GGG + chr4_1:52519242-52519261 Msa0554800:intron 10.0%
!! GAAAATTTGATATATATATA+AGG - chr4_1:52519584-52519603 None:intergenic 10.0%
!!! AATGAAAAGTTTTTTTTTTT+TGG - chr4_1:52520697-52520716 None:intergenic 10.0%
!!! AAAACTATTTTTCAATAAAT+TGG - chr4_1:52520794-52520813 None:intergenic 10.0%
!!! AGTTTTATTTATTTTAGTTT+GGG - chr4_1:52521844-52521863 None:intergenic 10.0%
!!! TAGTTTTATTTATTTTAGTT+TGG - chr4_1:52521845-52521864 None:intergenic 10.0%
!!! ATTTAATTTACTCAAAAAAT+TGG + chr4_1:52522604-52522623 Msa0554800:intron 10.0%
!! ATGATAAATAATGTTTATCA+TGG - chr4_1:52518951-52518970 None:intergenic 15.0%
!!! AGTCCTTATTTTAATTTTAT+AGG + chr4_1:52519034-52519053 Msa0554800:intron 15.0%
!!! GTCCTTATTTTAATTTTATA+GGG + chr4_1:52519035-52519054 Msa0554800:intron 15.0%
!! AAAAAAAGTTATAAGTTTCT+AGG - chr4_1:52519180-52519199 None:intergenic 15.0%
!!! AACTTTTTTTTCTTTTAGTT+TGG + chr4_1:52519190-52519209 Msa0554800:intron 15.0%
!! GATATCAATGAAAAATAATT+AGG + chr4_1:52519241-52519260 Msa0554800:intron 15.0%
!!! ATAAGTTTACCTTTTATTTT+TGG + chr4_1:52519541-52519560 Msa0554800:intron 15.0%
!! CATATTTAACCAAAAATAAA+AGG - chr4_1:52519553-52519572 None:intergenic 15.0%
!! ACATTAAAATATACATAAGT+TGG - chr4_1:52519688-52519707 None:intergenic 15.0%
!!! AAAGTGAAATTTATTTTTAG+AGG + chr4_1:52519945-52519964 Msa0554800:intron 15.0%
!!! AAGTGAAATTTATTTTTAGA+GGG + chr4_1:52519946-52519965 Msa0554800:intron 15.0%
!!! TTTATTTTCATTGAATAACA+TGG + chr4_1:52520021-52520040 Msa0554800:intron 15.0%
!! AAATTAACATTTCAATATTC+AGG + chr4_1:52520191-52520210 Msa0554800:intron 15.0%
!!! AATTGATGATGTTTTTTTTA+AGG + chr4_1:52520238-52520257 Msa0554800:intron 15.0%
!!! ATTGATGATGTTTTTTTTAA+GGG + chr4_1:52520239-52520258 Msa0554800:intron 15.0%
!!! TCTTTATTAGTTTTTAACAA+TGG - chr4_1:52520302-52520321 None:intergenic 15.0%
!! CTTATAAATTAAATAGACAA+GGG - chr4_1:52520336-52520355 None:intergenic 15.0%
!! CTAAGATTATAAGAATTATT+AGG - chr4_1:52520771-52520790 None:intergenic 15.0%
!!! TTTTTTTTAAGTAAGATACA+TGG - chr4_1:52520872-52520891 None:intergenic 15.0%
!!! TTTTAACTTGATTTTAATGT+TGG - chr4_1:52521245-52521264 None:intergenic 15.0%
!! TGAAAATAAAATTGTAATGT+TGG - chr4_1:52521322-52521341 None:intergenic 15.0%
!! CAATATTCATATAAACTTAA+TGG - chr4_1:52521512-52521531 None:intergenic 15.0%
!! CATTAAGTTTATATGAATAT+TGG + chr4_1:52521510-52521529 Msa0554800:intron 15.0%
!!! ATTTTTTATTTGAGTTTATG+AGG - chr4_1:52521886-52521905 None:intergenic 15.0%
!! TCATAAACTCAAATAAAAAA+TGG + chr4_1:52521885-52521904 Msa0554800:intron 15.0%
!! CATAAACTCAAATAAAAAAT+GGG + chr4_1:52521886-52521905 Msa0554800:intron 15.0%
!! ATAAACTCAAATAAAAAATG+GGG + chr4_1:52521887-52521906 Msa0554800:intron 15.0%
!! AAATTGAATTATATTTCTTC+AGG + chr4_1:52522879-52522898 Msa0554800:intron 15.0%
!! TAATAAAAGTGATAGAGAAA+AGG - chr4_1:52518615-52518634 None:intergenic 20.0%
!! CTATTGCTATATAAAACAAA+TGG - chr4_1:52518712-52518731 None:intergenic 20.0%
!! AGAAAAGATATCTCTATAAA+TGG + chr4_1:52518756-52518775 Msa0554800:five_prime_UTR 20.0%
!! GTCCCTATAAAATTAAAATA+AGG - chr4_1:52519040-52519059 None:intergenic 20.0%
!!! ATGGTGATTGAAAATTTTAT+AGG - chr4_1:52519645-52519664 None:intergenic 20.0%
!! TTAAAAATAGGGACAAAAAA+TGG - chr4_1:52519664-52519683 None:intergenic 20.0%
!! TATGAGTTTACTTAAAATGA+TGG + chr4_1:52519887-52519906 Msa0554800:intron 20.0%
!! TGTGATTTAATTAGCATAAA+TGG - chr4_1:52520138-52520157 None:intergenic 20.0%
!! TGAAATTAAAATGATAGAGA+AGG - chr4_1:52520166-52520185 None:intergenic 20.0%
!! AATATTCAGGCTAATAATAA+TGG + chr4_1:52520204-52520223 Msa0554800:intron 20.0%
!! GCTTATAAATTAAATAGACA+AGG - chr4_1:52520337-52520356 None:intergenic 20.0%
!!! TTTGGTTACAAAAGTTTTTT+AGG - chr4_1:52520679-52520698 None:intergenic 20.0%
!! AAGATTCATTGATATAAACT+AGG + chr4_1:52521046-52521065 Msa0554800:intron 20.0%
!! AGATTCATTGATATAAACTA+GGG + chr4_1:52521047-52521066 Msa0554800:intron 20.0%
!! GTTTACATTTCTTACATTAT+AGG - chr4_1:52521388-52521407 None:intergenic 20.0%
!!! TTAGTATTTTTCTTATGTTG+CGG + chr4_1:52521553-52521572 Msa0554800:intron 20.0%
!! AGTTATGGGTTTATAATTTA+GGG - chr4_1:52521751-52521770 None:intergenic 20.0%
!! CAAACTCTAATATCAAATTA+GGG - chr4_1:52521819-52521838 None:intergenic 20.0%
!! ACAAACTCTAATATCAAATT+AGG - chr4_1:52521820-52521839 None:intergenic 20.0%
!! TAAACTCAAATAAAAAATGG+GGG + chr4_1:52521888-52521907 Msa0554800:intron 20.0%
!!! ATGAATTTGATAACAAATCT+GGG - chr4_1:52521976-52521995 None:intergenic 20.0%
!!! ATTTGTTATCAAATTCATCA+CGG + chr4_1:52521978-52521997 Msa0554800:intron 20.0%
!!! GTCAATATTGTCTTTTTATA+GGG - chr4_1:52522085-52522104 None:intergenic 20.0%
!!! TGTCAATATTGTCTTTTTAT+AGG - chr4_1:52522086-52522105 None:intergenic 20.0%
!!! AATATTGACATTTTACTATG+TGG + chr4_1:52522096-52522115 Msa0554800:intron 20.0%
!! TTGAGTAAATTAAATGAGTT+CGG - chr4_1:52522599-52522618 None:intergenic 20.0%
!!! TTTTTTGTCTAATTGTGAAT+TGG - chr4_1:52522696-52522715 None:intergenic 20.0%
!!! AAAAAGAAGAAAAGTACATT+CGG + chr4_1:52522971-52522990 Msa0554800:CDS 20.0%
!! AATTTCATATCATTTGATCA+AGG + chr4_1:52523359-52523378 Msa0554800:CDS 20.0%
!! ATTTCATATCATTTGATCAA+GGG + chr4_1:52523360-52523379 Msa0554800:CDS 20.0%
!! CTATAGAAGATTAAATTGAA+GGG + chr4_1:52523466-52523485 Msa0554800:three_prime_UTR 20.0%
!! CAAAGTATATATTAATACTG+AGG + chr4_1:52523526-52523545 Msa0554800:three_prime_UTR 20.0%
!! TTCATTTGAAAACTATACTA+TGG + chr4_1:52523655-52523674 Msa0554800:three_prime_UTR 20.0%
!!! TGATGCTATTATTGTTTTGA+GGG - chr4_1:52518831-52518850 None:intergenic 25.0%
! GTAGAGACTAAATTAAAAAG+TGG + chr4_1:52519142-52519161 Msa0554800:intron 25.0%
! TCAATGAAAAATAATTAGGG+TGG + chr4_1:52519245-52519264 Msa0554800:intron 25.0%
!! CATAAGTTGGCTTAAAAATA+GGG - chr4_1:52519675-52519694 None:intergenic 25.0%
!! ACATAAGTTGGCTTAAAAAT+AGG - chr4_1:52519676-52519695 None:intergenic 25.0%
! TGGCAGTTAAAAATTGATAT+TGG - chr4_1:52519749-52519768 None:intergenic 25.0%
!!! TGAAAACGGAAATTTTTTGA+AGG + chr4_1:52519918-52519937 Msa0554800:intron 25.0%
! GCTAATAATAATGGTTAAGA+GGG + chr4_1:52520213-52520232 Msa0554800:intron 25.0%
!!! AAAAGTTTTTTAGGTGGATT+CGG - chr4_1:52520670-52520689 None:intergenic 25.0%
! AACATTGCATATATTATGCA+AGG + chr4_1:52520992-52521011 Msa0554800:intron 25.0%
! GATTCATTGATATAAACTAG+GGG + chr4_1:52521048-52521067 Msa0554800:intron 25.0%
! AAATTCAAACCAAACAAATG+CGG + chr4_1:52521168-52521187 Msa0554800:intron 25.0%
! TAGAGACTAAATTAAAAACG+TGG + chr4_1:52521350-52521369 Msa0554800:intron 25.0%
!! GTTTATATGAATATTGGTCT+AGG + chr4_1:52521516-52521535 Msa0554800:intron 25.0%
!! GTTTTTCTATTGGATTGATT+CGG + chr4_1:52521715-52521734 Msa0554800:intron 25.0%
! GTTATGGGTTTATAATTTAG+GGG - chr4_1:52521750-52521769 None:intergenic 25.0%
! GAGTTATGGGTTTATAATTT+AGG - chr4_1:52521752-52521771 None:intergenic 25.0%
!! TCTACACTTTCAAACATTTT+TGG + chr4_1:52521770-52521789 Msa0554800:intron 25.0%
! AACTAACGAAAATATGATAG+AGG + chr4_1:52521860-52521879 Msa0554800:intron 25.0%
!! GTTTTGTCAAATATCAATGA+GGG + chr4_1:52521939-52521958 Msa0554800:intron 25.0%
!! GATGAATTTGATAACAAATC+TGG - chr4_1:52521977-52521996 None:intergenic 25.0%
!!! TGACTTTCTGTTGATTTTAT+AGG - chr4_1:52522053-52522072 None:intergenic 25.0%
! AATCAACAGAAAGTCAATAT+TGG + chr4_1:52522057-52522076 Msa0554800:intron 25.0%
! TGTGGCAAAAAAATATCTAA+CGG + chr4_1:52522369-52522388 Msa0554800:intron 25.0%
! TGTGGCAAAAAAATATGTAA+CGG - chr4_1:52522519-52522538 None:intergenic 25.0%
! TGAGTAAATTAAATGAGTTC+GGG - chr4_1:52522598-52522617 None:intergenic 25.0%
!! TTTCTATTAGTTTGAACTCA+AGG - chr4_1:52522656-52522675 None:intergenic 25.0%
! GAGTTCAAACTAATAGAAAA+AGG + chr4_1:52522657-52522676 Msa0554800:intron 25.0%
! TAGTACAAGACAAATAGTTT+AGG + chr4_1:52522744-52522763 Msa0554800:intron 25.0%
!!! ATAGTTTAGGATGCTTTTTA+AGG + chr4_1:52522757-52522776 Msa0554800:intron 25.0%
!!! TTTTTTGTAACCTTTCAACT+TGG - chr4_1:52523063-52523082 None:intergenic 25.0%
! AAACTATGGAAAACAAAGAA+AGG + chr4_1:52523100-52523119 Msa0554800:CDS 25.0%
! TTGAGTTTGATAGAAAACTT+TGG - chr4_1:52523204-52523223 None:intergenic 25.0%
! ATTATGAAAGACTCTATTCT+TGG + chr4_1:52523251-52523270 Msa0554800:CDS 25.0%
! TATTCTTGGAAAAACTATGA+AGG + chr4_1:52523265-52523284 Msa0554800:CDS 25.0%
! ATTCTTGGAAAAACTATGAA+GGG + chr4_1:52523266-52523285 Msa0554800:CDS 25.0%
! GCTATAGAAGATTAAATTGA+AGG + chr4_1:52523465-52523484 Msa0554800:three_prime_UTR 25.0%
! ATTGAAGGGTAATTATTAAG+AGG + chr4_1:52523480-52523499 Msa0554800:three_prime_UTR 25.0%
!! TTCATCTCCTTTTCAATTAT+TGG - chr4_1:52523506-52523525 None:intergenic 25.0%
! TAAAACTTGCATGAAGAAAA+AGG - chr4_1:52523907-52523926 None:intergenic 25.0%
GAACAGAAACTAAAAGAGAA+GGG - chr4_1:52518690-52518709 None:intergenic 30.0%
CTCTATAAATGGAATGATTG+AGG + chr4_1:52518767-52518786 Msa0554800:five_prime_UTR 30.0%
GAATGATTGAGGAAAAAAAG+AGG + chr4_1:52518778-52518797 Msa0554800:five_prime_UTR 30.0%
GAGGAAAAAAAGAGGAAAAA+AGG + chr4_1:52518786-52518805 Msa0554800:five_prime_UTR 30.0%
!! GTGATGCTATTATTGTTTTG+AGG - chr4_1:52518832-52518851 None:intergenic 30.0%
AAACAATAATAGCATCACAG+TGG + chr4_1:52518834-52518853 Msa0554800:CDS 30.0%
TTTAATTAAGGACCTGATCT+TGG - chr4_1:52518918-52518937 None:intergenic 30.0%
TCAGGTCCTTAATTAAAACT+TGG + chr4_1:52518921-52518940 Msa0554800:intron 30.0%
!!! GGCAAACCAAGTTTTAATTA+AGG - chr4_1:52518930-52518949 None:intergenic 30.0%
ATGAAAAATAATTAGGGTGG+TGG + chr4_1:52519248-52519267 Msa0554800:intron 30.0%
TCAAGAGATTCTTGAACATT+TGG + chr4_1:52519322-52519341 Msa0554800:CDS 30.0%
! AGGAGTATGTAATATATACC+TGG - chr4_1:52519455-52519474 None:intergenic 30.0%
GTATATATTACATACTCCTC+CGG + chr4_1:52519456-52519475 Msa0554800:intron 30.0%
!!! GTTCCTCTAAAATTTTCCTT+CGG + chr4_1:52519610-52519629 Msa0554800:intron 30.0%
! AATCCGAAGGAAAATTTTAG+AGG - chr4_1:52519616-52519635 None:intergenic 30.0%
TTATAGGTACTAAAATCCGA+AGG - chr4_1:52519629-52519648 None:intergenic 30.0%
! TTCTATTTTCTTTTTGTGCG+TGG + chr4_1:52519807-52519826 Msa0554800:intron 30.0%
GGCTAATAATAATGGTTAAG+AGG + chr4_1:52520212-52520231 Msa0554800:intron 30.0%
!!! AATGGATTAGAACTTTTGAC+CGG - chr4_1:52520284-52520303 None:intergenic 30.0%
!!! GGTTACAAAAGTTTTTTAGG+TGG - chr4_1:52520676-52520695 None:intergenic 30.0%
!!! TGGTTCATAGATTTTTTTGG+TGG + chr4_1:52520949-52520968 Msa0554800:intron 30.0%
CATAATATATGCAATGTTCG+AGG - chr4_1:52520990-52521009 None:intergenic 30.0%
! ATTTTTCTTATGTTGCGGTT+TGG + chr4_1:52521558-52521577 Msa0554800:intron 30.0%
!!! TTCTTTTTTATACAGCCGTA+TGG - chr4_1:52521631-52521650 None:intergenic 30.0%
! GTTTGAAAGTGTAGAGTTAT+GGG - chr4_1:52521765-52521784 None:intergenic 30.0%
! TGTTTGAAAGTGTAGAGTTA+TGG - chr4_1:52521766-52521785 None:intergenic 30.0%
!! GGTTTTGTCAAATATCAATG+AGG + chr4_1:52521938-52521957 Msa0554800:intron 30.0%
! AATTTGATAACAAATCTGGG+TGG - chr4_1:52521973-52521992 None:intergenic 30.0%
CATTAAAATAGCAATGCCAT+GGG - chr4_1:52522030-52522049 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr4_1:52522203-52522222 Msa0554800:intron 30.0%
ATCTCCATTTACTCCATTTA+AGG + chr4_1:52522258-52522277 Msa0554800:intron 30.0%
CAAACCTTAAATGGAGTAAA+TGG - chr4_1:52522265-52522284 None:intergenic 30.0%
! CATTTACTCCATTTAAGGTT+TGG + chr4_1:52522263-52522282 Msa0554800:intron 30.0%
! CCTTAAATGGAGTACTTAAA+TGG - chr4_1:52522302-52522321 None:intergenic 30.0%
CCATTTAAGTACTCCATTTA+AGG + chr4_1:52522299-52522318 Msa0554800:intron 30.0%
! TAAGTACTCCATTTAAGGTT+TGG + chr4_1:52522304-52522323 Msa0554800:intron 30.0%
ATGCAAGTTTACTCCATTTA+AGG + chr4_1:52522286-52522305 Msa0554800:intron 30.0%
! AGTTTACTCCATTTAAGGTT+TGG + chr4_1:52522332-52522351 Msa0554800:intron 30.0%
! CATTTACTCTATTTAGGGTT+TGG - chr4_1:52522552-52522571 None:intergenic 30.0%
CAAACCCTAAATAGAGTAAA+TGG + chr4_1:52522550-52522569 Msa0554800:intron 30.0%
AGCTCCATTTACTCTATTTA+GGG - chr4_1:52522557-52522576 None:intergenic 30.0%
AAGCTCCATTTACTCTATTT+AGG - chr4_1:52522558-52522577 None:intergenic 30.0%
AGCTTGATAAATAAGAAGCT+AGG - chr4_1:52522818-52522837 None:intergenic 30.0%
TGTTAATTCAATACTGCAGA+TGG - chr4_1:52522856-52522875 None:intergenic 30.0%
! TTTTACCTGTTTTATGCCAA+CGG - chr4_1:52523019-52523038 None:intergenic 30.0%
! CATAGTTTGTGTAAAGTACA+AGG - chr4_1:52523088-52523107 None:intergenic 30.0%
CTTGTACTTTACACAAACTA+TGG + chr4_1:52523086-52523105 Msa0554800:CDS 30.0%
AAAGGCAGAGAAAACAAATT+GGG + chr4_1:52523118-52523137 Msa0554800:CDS 30.0%
TAAGAGGCCAATAATTGAAA+AGG + chr4_1:52523496-52523515 Msa0554800:three_prime_UTR 30.0%
ATAACCTATATGCTCTAGTT+AGG + chr4_1:52523597-52523616 Msa0554800:three_prime_UTR 30.0%
! ATGGATCAGATTCTTTTGTT+AGG + chr4_1:52523674-52523693 Msa0554800:three_prime_UTR 30.0%
AAATATTTCAGCAGTGTCAT+AGG + chr4_1:52523777-52523796 Msa0554800:three_prime_UTR 30.0%
TGTTAATCTTTACCAAGCAT+GGG - chr4_1:52523816-52523835 None:intergenic 30.0%
ATGTTAATCTTTACCAAGCA+TGG - chr4_1:52523817-52523836 None:intergenic 30.0%
AGTAGTTCAAGATTGCTTTA+GGG - chr4_1:52523865-52523884 None:intergenic 30.0%
TTCAACAAGTAGTTGCATGA+GGG + chr4_1:52518554-52518573 Msa0554800:five_prime_UTR 35.0%
GGAACAGAAACTAAAAGAGA+AGG - chr4_1:52518691-52518710 None:intergenic 35.0%
AATAATAGCATCACAGTGGA+TGG + chr4_1:52518838-52518857 Msa0554800:CDS 35.0%
ATTAGAACTTGTCTCACATG+TGG + chr4_1:52518877-52518896 Msa0554800:CDS 35.0%
ACATGTGGTCATCATATCAA+AGG + chr4_1:52518892-52518911 Msa0554800:CDS 35.0%
TAGGGACTAATGTAATGACT+AGG + chr4_1:52519053-52519072 Msa0554800:intron 35.0%
TCAAGAATCTCTTGATCTGT+AGG - chr4_1:52519317-52519336 None:intergenic 35.0%
TCTTGAACATTTGGAAGCAA+AGG + chr4_1:52519331-52519350 Msa0554800:CDS 35.0%
GGATGAACTCATCAATTAGA+GGG - chr4_1:52519382-52519401 None:intergenic 35.0%
! CATTTTCTCCTTCAAGAGTA+GGG - chr4_1:52519403-52519422 None:intergenic 35.0%
TATATACCTGGTAGTTTCTC+TGG - chr4_1:52519443-52519462 None:intergenic 35.0%
! TGATAGCTTGTATTGTACTC+CGG - chr4_1:52519478-52519497 None:intergenic 35.0%
TGATGGAACGAAAGTGAAAA+CGG + chr4_1:52519904-52519923 Msa0554800:intron 35.0%
TTGAATAACATGGTCAGAAG+TGG + chr4_1:52520031-52520050 Msa0554800:intron 35.0%
TTCATGTTGCTGAAGTCTAA+AGG - chr4_1:52520061-52520080 None:intergenic 35.0%
! CGTTGGAGTAACATTTTTGT+AGG + chr4_1:52520101-52520120 Msa0554800:intron 35.0%
! CATTTTTGTAGGAGAAGATG+TGG + chr4_1:52520112-52520131 Msa0554800:intron 35.0%
! TTTTGACCGGTTGTTTAAAG+GGG - chr4_1:52520271-52520290 None:intergenic 35.0%
! CTTTTGACCGGTTGTTTAAA+GGG - chr4_1:52520272-52520291 None:intergenic 35.0%
! ACTTTTGACCGGTTGTTTAA+AGG - chr4_1:52520273-52520292 None:intergenic 35.0%
ATGTATTCGTGTCAGATACA+TGG - chr4_1:52520909-52520928 None:intergenic 35.0%
!!! CATCACTCATTTTGAAGTGT+CGG + chr4_1:52520926-52520945 Msa0554800:intron 35.0%
!!! CGGTGGTTCATAGATTTTTT+TGG + chr4_1:52520946-52520965 Msa0554800:intron 35.0%
!!! TAGATTTTTTTGGTGGTGTC+TGG + chr4_1:52520956-52520975 Msa0554800:intron 35.0%
!!! AGATTTTTTTGGTGGTGTCT+GGG + chr4_1:52520957-52520976 Msa0554800:intron 35.0%
!!! TGCTTTTTCATCTTGCAGTT+CGG - chr4_1:52521117-52521136 None:intergenic 35.0%
ACCAAACAAATGCGGTTTAT+TGG + chr4_1:52521176-52521195 Msa0554800:intron 35.0%
TCCAATAAACCGCATTTGTT+TGG - chr4_1:52521180-52521199 None:intergenic 35.0%
ACAAATGCGGTTTATTGGAT+TGG + chr4_1:52521181-52521200 Msa0554800:intron 35.0%
!! GTTTATTGGATTGGTTTGTG+CGG + chr4_1:52521190-52521209 Msa0554800:intron 35.0%
!! TTTATTGGATTGGTTTGTGC+GGG + chr4_1:52521191-52521210 Msa0554800:intron 35.0%
! TTTTATACAGCCGTATGGTT+TGG - chr4_1:52521626-52521645 None:intergenic 35.0%
!! GCATTTGGTTTGGATGTATT+CGG - chr4_1:52521656-52521675 None:intergenic 35.0%
GAATACATCCAAACCAAATG+CGG + chr4_1:52521655-52521674 Msa0554800:intron 35.0%
ACAAAAAACCGCATTTGGTT+TGG - chr4_1:52521666-52521685 None:intergenic 35.0%
!!! AAACCAAATGCGGTTTTTTG+TGG + chr4_1:52521665-52521684 Msa0554800:intron 35.0%
AAACCACAAAAAACCGCATT+TGG - chr4_1:52521671-52521690 None:intergenic 35.0%
!!! AATGCGGTTTTTTGTGGTTT+CGG + chr4_1:52521671-52521690 Msa0554800:intron 35.0%
! TTTGTGGTTTCGGTTTGAAT+TGG + chr4_1:52521681-52521700 Msa0554800:intron 35.0%
ATGGGGGATAAATTCTAAAC+CGG + chr4_1:52521904-52521923 Msa0554800:intron 35.0%
CTTAGCTTCAAATATACCCA+TGG + chr4_1:52522011-52522030 Msa0554800:intron 35.0%
GCATTAAAATAGCAATGCCA+TGG - chr4_1:52522031-52522050 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr4_1:52522208-52522227 Msa0554800:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr4_1:52522209-52522228 Msa0554800:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG + chr4_1:52522210-52522229 Msa0554800:intron 35.0%
AAATGGAGATTAACCTGTAG+TGG - chr4_1:52522248-52522267 None:intergenic 35.0%
ACTTGCATCCAAACCTTAAA+TGG - chr4_1:52522274-52522293 None:intergenic 35.0%
ACTTGCATCCAAACCTTAAA+TGG - chr4_1:52522274-52522293 None:intergenic 35.0%
TGTTGTGATATGAGAGAAGA+AGG + chr4_1:52522424-52522443 Msa0554800:intron 35.0%
GTTGTGATATGAGAGAAGAA+GGG + chr4_1:52522425-52522444 Msa0554800:intron 35.0%
TAAATGGAGCTTAGCCTAAA+TGG + chr4_1:52522566-52522585 Msa0554800:intron 35.0%
AACTCAAGGAATCAAGTCTT+TGG - chr4_1:52522642-52522661 None:intergenic 35.0%
!!! AGGATGCTTTTTAAGGTTGA+TGG + chr4_1:52522764-52522783 Msa0554800:intron 35.0%
! TTTACCTGTTTTATGCCAAC+GGG - chr4_1:52523018-52523037 None:intergenic 35.0%
! TACAACAAGTCCAAGTTGAA+AGG + chr4_1:52523050-52523069 Msa0554800:CDS 35.0%
GAAAGGCAGAGAAAACAAAT+TGG + chr4_1:52523117-52523136 Msa0554800:CDS 35.0%
TGATGCATCAGTATCATCTT+GGG + chr4_1:52523141-52523160 Msa0554800:CDS 35.0%
AGTGATGAAGAAGAGAAAGA+AGG + chr4_1:52523164-52523183 Msa0554800:CDS 35.0%
AAAACTATGAAGGGTCAAAG+TGG + chr4_1:52523275-52523294 Msa0554800:CDS 35.0%
AAACTATGAAGGGTCAAAGT+GGG + chr4_1:52523276-52523295 Msa0554800:CDS 35.0%
AATGGCAAAAACAGTACTAG+TGG + chr4_1:52523311-52523330 Msa0554800:CDS 35.0%
CACTTGAATCAAGGATTGAA+TGG - chr4_1:52523437-52523456 None:intergenic 35.0%
CATTCAATCCTTGATTCAAG+TGG + chr4_1:52523435-52523454 Msa0554800:exon 35.0%
TAGTTAGGATGGAAAATGGT+GGG + chr4_1:52523612-52523631 Msa0554800:three_prime_UTR 35.0%
! GAAAATGGTGGGAAAGAATT+AGG + chr4_1:52523623-52523642 Msa0554800:three_prime_UTR 35.0%
CAGTAGTTCAAGATTGCTTT+AGG - chr4_1:52523866-52523885 None:intergenic 35.0%
! GCAACTACTTGTTGAAGTGT+GGG - chr4_1:52518550-52518569 None:intergenic 40.0%
! TGCAACTACTTGTTGAAGTG+TGG - chr4_1:52518551-52518570 None:intergenic 40.0%
CTTCAACAAGTAGTTGCATG+AGG + chr4_1:52518553-52518572 Msa0554800:five_prime_UTR 40.0%
TCAACAAGTAGTTGCATGAG+GGG + chr4_1:52518555-52518574 Msa0554800:five_prime_UTR 40.0%
AGAACGGTTGAGTTAAGAGA+GGG - chr4_1:52518661-52518680 None:intergenic 40.0%
TCATATCAAAGGCCAAGATC+AGG + chr4_1:52518903-52518922 Msa0554800:CDS 40.0%
GGTGGAATTAATGACTTACC+TGG + chr4_1:52519266-52519285 Msa0554800:CDS 40.0%
AACATTTGGAAGCAAAGGTG+AGG + chr4_1:52519336-52519355 Msa0554800:CDS 40.0%
GGGATGAACTCATCAATTAG+AGG - chr4_1:52519383-52519402 None:intergenic 40.0%
! CCATTTTCTCCTTCAAGAGT+AGG - chr4_1:52519404-52519423 None:intergenic 40.0%
CCTACTCTTGAAGGAGAAAA+TGG + chr4_1:52519401-52519420 Msa0554800:CDS 40.0%
! GAAGAAAGCAGTTGTTTCGT+TGG + chr4_1:52520084-52520103 Msa0554800:intron 40.0%
ATCAGACCCCTTTAAACAAC+CGG + chr4_1:52520262-52520281 Msa0554800:intron 40.0%
!!! TTTTTCAAGCCAACACACGT+TGG + chr4_1:52520490-52520509 Msa0554800:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG - chr4_1:52521019-52521038 None:intergenic 40.0%
!! ATATAAACTAGGGGTGTTCG+CGG + chr4_1:52521057-52521076 Msa0554800:intron 40.0%
! CTGCAAGATGAAAAAGCATG+CGG + chr4_1:52521119-52521138 Msa0554800:intron 40.0%
!! TCTTATGTTGCGGTTTGGTT+TGG + chr4_1:52521563-52521582 Msa0554800:intron 40.0%
!! CGGTTTGGTTTGGTTTAGTT+CGG + chr4_1:52521573-52521592 Msa0554800:intron 40.0%
! GGTTTCGGTTTGAATTGGTT+CGG + chr4_1:52521686-52521705 Msa0554800:intron 40.0%
!! GTTTGAATTGGTTCGGTTTG+CGG + chr4_1:52521693-52521712 Msa0554800:intron 40.0%
!! TCGGTTTGCGGTTTTTCTAT+TGG + chr4_1:52521705-52521724 Msa0554800:intron 40.0%
!! GATCTTTAGAGCATAGACGT+CGG - chr4_1:52521797-52521816 None:intergenic 40.0%
ACAAAACCAAGTTCAGTGAC+CGG - chr4_1:52521926-52521945 None:intergenic 40.0%
TGATAACAAATCTGGGTGGA+GGG - chr4_1:52521969-52521988 None:intergenic 40.0%
! TTGATAACAAATCTGGGTGG+AGG - chr4_1:52521970-52521989 None:intergenic 40.0%
GCTTGCATCCAAACCTTAAA+TGG - chr4_1:52522343-52522362 None:intergenic 40.0%
GAAGCTAGGTACAAAGTCAT+GGG - chr4_1:52522804-52522823 None:intergenic 40.0%
AGAAGCTAGGTACAAAGTCA+TGG - chr4_1:52522805-52522824 None:intergenic 40.0%
TCTTCAGGAGTAAGCAAAGA+TGG + chr4_1:52522894-52522913 Msa0554800:intron 40.0%
! AAAAGTACATTCGGATCACG+AGG + chr4_1:52522980-52522999 Msa0554800:CDS 40.0%
!! AACTTGGACTTGTTGTAGAC+TGG - chr4_1:52523047-52523066 None:intergenic 40.0%
GTGATGCATCAGTATCATCT+TGG + chr4_1:52523140-52523159 Msa0554800:CDS 40.0%
AGTGGGAATGAGGTAATCAA+TGG + chr4_1:52523293-52523312 Msa0554800:CDS 40.0%
! GAGCATTGCTAGATCTATGT+TGG - chr4_1:52523388-52523407 None:intergenic 40.0%
TCAATCCTTGATTCAAGTGG+TGG + chr4_1:52523438-52523457 Msa0554800:exon 40.0%
CCATCCTAACTAGAGCATAT+AGG - chr4_1:52523604-52523623 None:intergenic 40.0%
CCTATATGCTCTAGTTAGGA+TGG + chr4_1:52523601-52523620 Msa0554800:three_prime_UTR 40.0%
GCTCTAGTTAGGATGGAAAA+TGG + chr4_1:52523608-52523627 Msa0554800:three_prime_UTR 40.0%
CTAGTTAGGATGGAAAATGG+TGG + chr4_1:52523611-52523630 Msa0554800:three_prime_UTR 40.0%
ATCATATATGTGCCCATGCT+TGG + chr4_1:52523801-52523820 Msa0554800:three_prime_UTR 40.0%
! CTACTTGTTGAAGTGTGGGA+AGG - chr4_1:52518546-52518565 None:intergenic 45.0%
GAGAACGGTTGAGTTAAGAG+AGG - chr4_1:52518662-52518681 None:intergenic 45.0%
AAGAGAAGGGACAGAGAGAA+CGG - chr4_1:52518677-52518696 None:intergenic 45.0%
CATCACAGTGGATGGAAGAA+AGG + chr4_1:52518846-52518865 Msa0554800:CDS 45.0%
GAGTTCATCCCTACTCTTGA+AGG + chr4_1:52519392-52519411 Msa0554800:CDS 45.0%
ACTCATCCAGAGAAACTACC+AGG + chr4_1:52519434-52519453 Msa0554800:CDS 45.0%
! TAGCTTGTATTGTACTCCGG+AGG - chr4_1:52519475-52519494 None:intergenic 45.0%
!! TTGGCTCAGTTGGTAAGGAA+CGG + chr4_1:52520509-52520528 Msa0554800:intron 45.0%
TCGAACACACAACCTTCTGA+GGG - chr4_1:52520543-52520562 None:intergenic 45.0%
ATCGAACACACAACCTTCTG+AGG - chr4_1:52520544-52520563 None:intergenic 45.0%
!!! TTTTTAGGTGGATTCGGCTC+CGG - chr4_1:52520664-52520683 None:intergenic 45.0%
!!! CACTCATTTTGAAGTGTCGG+TGG + chr4_1:52520929-52520948 Msa0554800:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG - chr4_1:52521020-52521039 None:intergenic 45.0%
ACCAACTGAGCTAAGTTCAC+AGG + chr4_1:52521020-52521039 Msa0554800:intron 45.0%
CCAACTGAGCTAAGTTCACA+GGG + chr4_1:52521021-52521040 Msa0554800:intron 45.0%
!!! TGCAGTTTGGTTCGGTTTTG+AGG + chr4_1:52521080-52521099 Msa0554800:intron 45.0%
!! GTATGGTTTGGTTCGGTTTG+CGG - chr4_1:52521614-52521633 None:intergenic 45.0%
GCAAACCGAACCAAACCATA+CGG + chr4_1:52521613-52521632 Msa0554800:intron 45.0%
!! TACAGCCGTATGGTTTGGTT+CGG - chr4_1:52521621-52521640 None:intergenic 45.0%
TCTAAACCGGTCACTGAACT+TGG + chr4_1:52521917-52521936 Msa0554800:intron 45.0%
TTGGATGCAAGCAAGACATG+TGG + chr4_1:52522351-52522370 Msa0554800:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG - chr4_1:52522583-52522602 None:intergenic 45.0%
TGATCCGCCATTTCTTTCAC+CGG + chr4_1:52522919-52522938 Msa0554800:CDS 45.0%
TGTTCCTGTTGTGTATGCCT+TGG - chr4_1:52522949-52522968 None:intergenic 45.0%
GAAACCCGTTGGCATAAAAC+AGG + chr4_1:52523011-52523030 Msa0554800:CDS 45.0%
CAAACTCAACCAAGACAGTG+TGG + chr4_1:52523215-52523234 Msa0554800:CDS 45.0%
GAATTACCACCACACTGTCT+TGG - chr4_1:52523227-52523246 None:intergenic 45.0%
CTTGTCCACCACTTGAATCA+AGG - chr4_1:52523446-52523465 None:intergenic 45.0%
TTGTTGAAGACTCAAGCGAG+AGG + chr4_1:52523716-52523735 Msa0554800:three_prime_UTR 45.0%
!!! AATATGAATTTTTATATTTT+TGG - chr4_1:52519769-52519788 None:intergenic 5.0%
!!! TAATTTATAAATGATATTTT+AGG - chr4_1:52520438-52520457 None:intergenic 5.0%
!! TTAAATTAAAAAACAATAAA+AGG + chr4_1:52522400-52522419 Msa0554800:intron 5.0%
GGATCAAACTTCACTCCAGC+TGG - chr4_1:52519296-52519315 None:intergenic 50.0%
!! ACACGTTGGCTCAGTTGGTA+AGG + chr4_1:52520504-52520523 Msa0554800:intron 50.0%
CGAACACACAACCTTCTGAG+GGG - chr4_1:52520542-52520561 None:intergenic 50.0%
TACCTCTGTGAGTGCCCTTT+GGG + chr4_1:52520608-52520627 Msa0554800:intron 50.0%
CCCTGTGAACTTAGCTCAGT+TGG - chr4_1:52521024-52521043 None:intergenic 50.0%
TGAGCTTAGCTCAGCTGGTT+GGG + chr4_1:52522181-52522200 Msa0554800:intron 50.0%
AGATTAACCTGTAGTGGCCG+GGG - chr4_1:52522242-52522261 None:intergenic 50.0%
GAGATTAACCTGTAGTGGCC+GGG - chr4_1:52522243-52522262 None:intergenic 50.0%
GGAGATTAACCTGTAGTGGC+CGG - chr4_1:52522244-52522263 None:intergenic 50.0%
!! GGTGAAAGAAATGGCGGATC+AGG - chr4_1:52522920-52522939 None:intergenic 50.0%
ATGGCCGGTGAAAGAAATGG+CGG - chr4_1:52522926-52522945 None:intergenic 50.0%
TGGATGGCCGGTGAAAGAAA+TGG - chr4_1:52522929-52522948 None:intergenic 50.0%
TTTCTTTCACCGGCCATCCA+AGG + chr4_1:52522929-52522948 Msa0554800:CDS 50.0%
TTGTGTATGCCTTGGATGGC+CGG - chr4_1:52522941-52522960 None:intergenic 50.0%
CCTGTTGTGTATGCCTTGGA+TGG - chr4_1:52522945-52522964 None:intergenic 50.0%
CCATCCAAGGCATACACAAC+AGG + chr4_1:52522942-52522961 Msa0554800:CDS 50.0%
GTACATTCGGATCACGAGGA+TGG + chr4_1:52522984-52523003 Msa0554800:CDS 50.0%
ACTCAACCAAGACAGTGTGG+TGG + chr4_1:52523218-52523237 Msa0554800:CDS 50.0%
GAAGGGTCAAAGTGGGAATG+AGG + chr4_1:52523283-52523302 Msa0554800:CDS 50.0%
GACTTACCTGGATTGCCAGC+TGG + chr4_1:52519278-52519297 Msa0554800:CDS 55.0%
TTCACTCCAGCTGGCAATCC+AGG - chr4_1:52519287-52519306 None:intergenic 55.0%
CCAACTGAGCCAACGTGTGT+TGG - chr4_1:52520502-52520521 None:intergenic 55.0%
!! CCAACACACGTTGGCTCAGT+TGG + chr4_1:52520499-52520518 Msa0554800:intron 55.0%
! CACAACCTTCTGAGGGGATG+TGG - chr4_1:52520536-52520555 None:intergenic 55.0%
CACCAACACCGTCCTCACAT+CGG - chr4_1:52520575-52520594 None:intergenic 55.0%
!! GATGTGAGGACGGTGTTGGT+GGG + chr4_1:52520574-52520593 Msa0554800:intron 55.0%
GTACCTCTGTGAGTGCCCTT+TGG + chr4_1:52520607-52520626 Msa0554800:intron 55.0%
GTTCGCGGTGCAGTTTGGTT+CGG + chr4_1:52521072-52521091 Msa0554800:intron 55.0%
GTGAGCTTAGCTCAGCTGGT+TGG + chr4_1:52522180-52522199 Msa0554800:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + chr4_1:52522222-52522241 Msa0554800:intron 55.0%
GGGTTTGGATGCAAGACGTG+TGG - chr4_1:52522537-52522556 None:intergenic 55.0%
AGGATGGAAGCGAAACCCGT+TGG + chr4_1:52523000-52523019 Msa0554800:CDS 55.0%
ACGGACCACATCCCCTCAGA+AGG + chr4_1:52520528-52520547 Msa0554800:intron 60.0%
TGCCGATGTGAGGACGGTGT+TGG + chr4_1:52520570-52520589 Msa0554800:intron 60.0%
! CGATGTGAGGACGGTGTTGG+TGG + chr4_1:52520573-52520592 Msa0554800:intron 60.0%
CCAGCTGAGCTAAGCTCACG+AGG - chr4_1:52522179-52522198 None:intergenic 60.0%
CCTCGTGAGCTTAGCTCAGC+TGG + chr4_1:52522176-52522195 Msa0554800:intron 60.0%
GTTCAAACCCCGGCCACTAC+AGG + chr4_1:52522232-52522251 Msa0554800:intron 60.0%
CGATTCCCGCTGCCGATGTG+AGG + chr4_1:52520560-52520579 Msa0554800:intron 65.0%
TCCCGCTGCCGATGTGAGGA+CGG + chr4_1:52520564-52520583 Msa0554800:intron 65.0%
ACCGTCCTCACATCGGCAGC+GGG - chr4_1:52520568-52520587 None:intergenic 65.0%
CACCGTCCTCACATCGGCAG+CGG - chr4_1:52520569-52520588 None:intergenic 65.0%
!! GGCCCAAAGGGCACTCACAG+AGG - chr4_1:52520613-52520632 None:intergenic 65.0%
CTGTGAGTGCCCTTTGGGCC+CGG + chr4_1:52520613-52520632 Msa0554800:intron 65.0%
TCCGGTCACCACCAGGGTCA+GGG - chr4_1:52520646-52520665 None:intergenic 65.0%
TTCGGCTCCGGTCACCACCA+GGG - chr4_1:52520652-52520671 None:intergenic 65.0%
ATTCGGCTCCGGTCACCACC+AGG - chr4_1:52520653-52520672 None:intergenic 65.0%
! GGGGTGTTCGCGGTGCAGTT+TGG + chr4_1:52521067-52521086 Msa0554800:intron 65.0%
TGAGTGCCCTTTGGGCCCGG+AGG + chr4_1:52520616-52520635 Msa0554800:intron 70.0%
GTCACCACCAGGGTCAGGGC+AGG - chr4_1:52520642-52520661 None:intergenic 70.0%
! GCCCTGACCCTGGTGGTGAC+CGG + chr4_1:52520642-52520661 Msa0554800:intron 70.0%
CTCCGGTCACCACCAGGGTC+AGG - chr4_1:52520647-52520666 None:intergenic 70.0%
GGCAGGCCTCCGGGCCCAAA+GGG - chr4_1:52520625-52520644 None:intergenic 75.0%
CAGGGTCAGGGCAGGCCTCC+GGG - chr4_1:52520634-52520653 None:intergenic 75.0%
CCAGGGTCAGGGCAGGCCTC+CGG - chr4_1:52520635-52520654 None:intergenic 75.0%
GAGGCCTGCCCTGACCCTGG+TGG + chr4_1:52520635-52520654 Msa0554800:intron 75.0%
! GGGCAGGCCTCCGGGCCCAA+AGG - chr4_1:52520626-52520645 None:intergenic 80.0%
! CCGGAGGCCTGCCCTGACCC+TGG + chr4_1:52520632-52520651 Msa0554800:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52518536 52523961 52518536 ID=Msa0554800;Name=Msa0554800
chr4_1 mRNA 52518536 52523961 52518536 ID=Msa0554800-mRNA-1;Parent=Msa0554800;Name=Msa0554800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=275|1|1|1|1|1|3|513|284
chr4_1 exon 52518536 52518924 52518536 ID=Msa0554800-mRNA-1:exon:15161;Parent=Msa0554800-mRNA-1
chr4_1 exon 52519263 52519455 52519263 ID=Msa0554800-mRNA-1:exon:15162;Parent=Msa0554800-mRNA-1
chr4_1 exon 52522901 52523961 52522901 ID=Msa0554800-mRNA-1:exon:15163;Parent=Msa0554800-mRNA-1
chr4_1 five_prime_UTR 52518536 52518810 52518536 ID=Msa0554800-mRNA-1:five_prime_utr;Parent=Msa0554800-mRNA-1
chr4_1 CDS 52518811 52518924 52518811 ID=Msa0554800-mRNA-1:cds;Parent=Msa0554800-mRNA-1
chr4_1 CDS 52519263 52519455 52519263 ID=Msa0554800-mRNA-1:cds;Parent=Msa0554800-mRNA-1
chr4_1 CDS 52522901 52523448 52522901 ID=Msa0554800-mRNA-1:cds;Parent=Msa0554800-mRNA-1
chr4_1 three_prime_UTR 52523449 52523961 52523449 ID=Msa0554800-mRNA-1:three_prime_utr;Parent=Msa0554800-mRNA-1
Gene Sequence

>Msa0554800

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGAGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGATGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAAGTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGGCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGATCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA
Protein sequence

>Msa0554800

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNKSKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*