AlfalfaGEDB | Msa0691400

M. sativa cultivar zhongmu-4 / Msa0691400

KEGG: -
GO: GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691400	XP_013456684.1	96.479	284	10	0	1	284	1	284	0.0	575

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691400	sp\|O49459\|NAC73_ARATH	79.188	197	40	1	21	217	33	228	1.67e-113	332

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691400	A0A072UXW5	96.479	284	10	0	1	284	1	284	0.0	575

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0691400	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072900	Msa0691400	0.813299	2.745372e-51	-8.615850e-47
Msa0440320	Msa0691400	0.800109	1.681590e-48	-8.615850e-47
Msa0487500	Msa0691400	0.807883	4.066982e-50	-8.615850e-47
Msa0553240	Msa0691400	0.814405	1.566384e-51	-8.615850e-47
Msa0554800	Msa0691400	0.938171	1.045287e-98	-8.615850e-47
Msa0571290	Msa0691400	0.806578	7.685067e-50	-8.615850e-47
Msa0608400	Msa0691400	0.896344	4.035100e-76	-8.615850e-47
Msa0648900	Msa0691400	0.805098	1.572984e-49	-8.615850e-47
Msa0664600	Msa0691400	0.803995	2.671539e-49	-8.615850e-47
Msa0691400	Msa1258170	0.800680	1.286187e-48	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691400	MtrunA17_Chr4g0040541	96.479	284	10	0	1	284	1	284	0.0	575
Msa0691400	MtrunA17_Chr2g0324961	79.570	279	51	4	1	277	1	275	3.03e-152	426
Msa0691400	MtrunA17_Chr4g0046431	67.159	271	75	7	13	277	32	294	3.79e-120	347
Msa0691400	MtrunA17_Chr2g0282871	60.490	286	94	8	1	274	1	279	1.72e-112	327
Msa0691400	MtrunA17_Chr8g0367761	73.709	213	49	4	13	220	32	242	3.60e-108	314
Msa0691400	MtrunA17_Chr8g0389661	74.359	195	39	4	26	214	30	219	2.01e-95	289
Msa0691400	MtrunA17_Chr5g0422431	55.330	197	83	2	19	215	32	223	6.50e-69	220
Msa0691400	MtrunA17_Chr1g0198751	56.250	192	79	2	24	215	37	223	3.04e-68	219
Msa0691400	MtrunA17_Chr7g0227071	54.054	185	82	1	24	208	34	215	8.24e-64	208
Msa0691400	MtrunA17_Chr1g0198741	56.637	113	48	1	103	215	7	118	1.29e-33	124

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0691400	AT4G28500.1	79.188	197	40	1	21	217	33	228	1.70e-114	332
Msa0691400	AT1G28470.1	78.974	195	38	2	23	215	50	243	1.37e-108	317
Msa0691400	AT4G29230.3	70.792	202	47	2	24	218	29	225	1.48e-98	296
Msa0691400	AT4G29230.1	70.792	202	47	2	24	218	29	225	5.89e-98	296
Msa0691400	AT4G29230.2	70.297	202	47	2	24	218	29	224	4.82e-97	294
Msa0691400	AT5G56620.3	65.517	203	56	4	26	218	25	223	3.93e-90	274
Msa0691400	AT5G56620.2	65.517	203	56	4	26	218	25	223	4.21e-90	273
Msa0691400	AT5G56620.1	65.517	203	56	4	26	218	25	223	8.98e-90	272
Msa0691400	AT1G25580.1	56.842	190	71	4	24	213	37	215	3.42e-65	211
Msa0691400	AT5G14490.2	51.064	188	87	3	26	213	36	218	9.84e-56	181

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 80 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATGAAGGGTCAAAG+TGG	0.604850	4_4:+59502222	Msa0691400:CDS
AAAAGTACATTCGGATCACG+AGG	0.691199	4_4:+59501927	Msa0691400:CDS
AAACAATAATAGCATCACAG+TGG	0.704092	4_4:+59498549	Msa0691400:CDS
AAACTATGAAGGGTCAAAGT+GGG	0.577178	4_4:+59502223	Msa0691400:CDS
AAAGCCAGAGAAAACAAATT+GGG	0.499778	4_4:+59502065	Msa0691400:CDS
AACATTTGGAAGCAAAGGTG+AGG	0.627859	4_4:+59499051	Msa0691400:CDS
AACTTCGAATTGTTGTAGAC+TGG	0.497574	4_4:-59501991	None:intergenic
AAGAGAAGGGACAGAGAGAA+CGG	0.572639	4_4:-59498389	None:intergenic
AATAATAGCATCACAGTGGA+TGG	0.523592	4_4:+59498553	Msa0691400:CDS
AATTTCATATCATTTGATCA+AGG	0.491183	4_4:+59502306	Msa0691400:CDS

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAACAGAAACTAAAAGAGAA+GGG	-	chr4_4:59498405-59498424	None:intergenic	30.0%
CTCTATAAATGGAATGATTG+AGG	+	chr4_4:59498482-59498501	Msa0691400:five_prime_UTR	30.0%
GAATGATTGAGGAAAAAAAG+AGG	+	chr4_4:59498493-59498512	Msa0691400:five_prime_UTR	30.0%
GAGGAAAAAAAGAGGAAAAA+AGG	+	chr4_4:59498501-59498520	Msa0691400:five_prime_UTR	30.0%
AAACAATAATAGCATCACAG+TGG	+	chr4_4:59498549-59498568	Msa0691400:CDS	30.0%
TTTAATTAAGGACCTGATCT+TGG	-	chr4_4:59498633-59498652	None:intergenic	30.0%
TCAGGTCCTTAATTAAAACT+TGG	+	chr4_4:59498636-59498655	Msa0691400:intron	30.0%
ATGAAAAATAATTAGGGTGG+TGG	+	chr4_4:59498963-59498982	Msa0691400:intron	30.0%
TCAAGAGATTCTTGAACATT+TGG	+	chr4_4:59499037-59499056	Msa0691400:CDS	30.0%
TGATGGAACAAAAGTGAAAA+CGG	+	chr4_4:59499643-59499662	Msa0691400:intron	30.0%

Showing 1 to 10 of 242 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	59498251	59502499	59498251	ID=Msa0691400;Name=Msa0691400
chr4_4	mRNA	59498251	59502499	59498251	ID=Msa0691400-mRNA-1;Parent=Msa0691400;Name=Msa0691400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=275\|1\|1\|1\|1\|1\|3\|104\|284
chr4_4	exon	59498251	59498639	59498251	ID=Msa0691400-mRNA-1:exon:16190;Parent=Msa0691400-mRNA-1
chr4_4	exon	59498978	59499170	59498978	ID=Msa0691400-mRNA-1:exon:16191;Parent=Msa0691400-mRNA-1
chr4_4	exon	59501848	59502499	59501848	ID=Msa0691400-mRNA-1:exon:16192;Parent=Msa0691400-mRNA-1
chr4_4	five_prime_UTR	59498251	59498525	59498251	ID=Msa0691400-mRNA-1:five_prime_utr;Parent=Msa0691400-mRNA-1
chr4_4	CDS	59498526	59498639	59498526	ID=Msa0691400-mRNA-1:cds;Parent=Msa0691400-mRNA-1
chr4_4	CDS	59498978	59499170	59498978	ID=Msa0691400-mRNA-1:cds;Parent=Msa0691400-mRNA-1
chr4_4	CDS	59501848	59502395	59501848	ID=Msa0691400-mRNA-1:cds;Parent=Msa0691400-mRNA-1
chr4_4	three_prime_UTR	59502396	59502499	59502396	ID=Msa0691400-mRNA-1:three_prime_utr;Parent=Msa0691400-mRNA-1

Gene Sequence

>Msa0691400

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGAGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCGAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGATCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA

Protein sequence

>Msa0691400

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*