AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608400 MtrunA17_Chr4g0040541 96.127 284 11 0 1 284 1 284 0.0 573
Msa0608400 MtrunA17_Chr2g0324961 79.211 279 52 4 1 277 1 275 1.91e-151 424
Msa0608400 MtrunA17_Chr4g0046431 66.790 271 76 7 13 277 32 294 2.96e-119 344
Msa0608400 MtrunA17_Chr2g0282871 60.140 286 95 8 1 274 1 279 2.39e-111 324
Msa0608400 MtrunA17_Chr8g0367761 73.239 213 50 4 13 220 32 242 3.77e-107 311
Msa0608400 MtrunA17_Chr8g0389661 73.846 195 40 4 26 214 30 219 1.76e-94 287
Msa0608400 MtrunA17_Chr5g0422431 55.838 197 82 2 19 215 32 223 7.77e-70 222
Msa0608400 MtrunA17_Chr1g0198751 56.771 192 78 2 24 215 37 223 4.74e-69 221
Msa0608400 MtrunA17_Chr7g0227071 54.054 185 82 1 24 208 34 215 4.22e-64 209
Msa0608400 MtrunA17_Chr1g0198741 56.637 113 48 1 103 215 7 118 5.21e-34 125
Msa0608400 MtrunA17_Chr3g0091921 28.512 242 144 6 48 282 16 235 2.68e-16 77.4
Msa0608400 MtrunA17_Chr1g0147421 33.333 165 87 7 48 206 27 174 1.88e-15 75.5
Msa0608400 MtrunA17_Chr7g0217711 32.432 148 82 4 43 189 14 144 1.99e-15 72.8
Msa0608400 MtrunA17_Chr7g0217721 29.500 200 98 7 50 229 21 197 4.00e-15 74.7
Msa0608400 MtrunA17_Chr6g0453451 34.722 144 74 5 48 189 20 145 2.00e-14 72.4
Msa0608400 MtrunA17_Chr4g0060931 33.333 144 76 5 48 189 17 142 5.95e-14 71.2
Msa0608400 MtrunA17_Chr6g0461661 33.140 172 81 8 48 206 18 168 7.49e-14 70.9
Msa0608400 MtrunA17_Chr7g0214071 32.653 147 76 7 48 191 15 141 1.53e-13 68.9
Msa0608400 MtrunA17_Chr3g0124761 28.641 206 105 8 48 246 7 177 3.04e-13 68.6
Msa0608400 MtrunA17_Chr6g0484441 32.168 143 79 4 48 189 5 130 4.22e-13 68.6
Msa0608400 MtrunA17_Chr5g0400461 30.769 169 89 8 48 205 6 157 4.40e-13 68.6
Msa0608400 MtrunA17_Chr5g0405211 29.310 174 82 8 48 206 8 155 1.30e-12 67.0
Msa0608400 MtrunA17_Chr3g0128151 28.395 162 88 6 33 187 7 147 2.10e-12 67.0
Msa0608400 MtrunA17_Chr4g0056541 29.480 173 95 7 42 206 1 154 7.07e-12 65.1
Msa0608400 MtrunA17_Chr3g0144271 33.557 149 78 6 47 191 22 153 7.18e-12 65.1
Msa0608400 MtrunA17_Chr5g0398971 29.714 175 94 8 42 206 1 156 8.04e-12 64.7
Msa0608400 MtrunA17_Chr8g0359921 31.469 143 80 4 48 189 14 139 8.67e-12 64.7
Msa0608400 MtrunA17_Chr2g0318101 32.237 152 81 7 46 193 13 146 1.02e-11 64.7
Msa0608400 MtrunA17_Chr8g0364791 29.143 175 98 7 45 211 3 159 1.34e-11 64.3
Msa0608400 MtrunA17_Chr8g0385991 30.000 150 83 7 43 189 9 139 1.39e-11 62.8
Msa0608400 MtrunA17_Chr8g0384721 30.345 145 82 5 48 191 7 133 2.02e-11 63.2
Msa0608400 MtrunA17_Chr5g0428991 27.500 160 88 6 36 188 13 151 3.24e-11 63.5
Msa0608400 MtrunA17_Chr3g0092671 32.121 165 84 8 51 206 8 153 4.74e-11 63.2
Msa0608400 MtrunA17_Chr7g0263931 32.877 146 76 7 48 189 11 138 5.06e-11 62.4
Msa0608400 MtrunA17_Chr3g0109821 33.766 154 76 8 47 195 5 137 6.60e-11 62.8
Msa0608400 MtrunA17_Chr1g0183741 29.480 173 99 8 41 208 2 156 6.79e-11 61.6
Msa0608400 MtrunA17_Chr2g0318081 32.639 144 77 5 48 189 16 141 6.84e-11 62.0
Msa0608400 MtrunA17_Chr4g0017921 29.448 163 97 6 47 206 7 154 7.86e-11 62.0
Msa0608400 MtrunA17_Chr5g0417791 30.769 143 81 5 48 189 3 128 8.11e-11 61.2
Msa0608400 MtrunA17_Chr8g0346001 29.412 153 85 5 42 189 9 143 8.21e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608400 AT4G28500.1 78.680 197 41 1 21 217 33 228 1.54e-113 330
Msa0608400 AT1G28470.1 78.462 195 39 2 23 215 50 243 9.66e-108 315
Msa0608400 AT4G29230.3 70.297 202 48 2 24 218 29 225 1.46e-97 293
Msa0608400 AT4G29230.1 70.297 202 48 2 24 218 29 225 6.56e-97 294
Msa0608400 AT4G29230.2 69.802 202 48 2 24 218 29 224 4.72e-96 291
Msa0608400 AT5G56620.3 65.025 203 57 4 26 218 25 223 4.86e-89 271
Msa0608400 AT5G56620.2 65.025 203 57 4 26 218 25 223 5.10e-89 271
Msa0608400 AT5G56620.1 65.025 203 57 4 26 218 25 223 1.09e-88 269
Msa0608400 AT1G25580.1 57.368 190 70 4 24 213 37 215 3.36e-66 213
Msa0608400 AT5G14490.2 50.532 188 88 3 26 213 36 218 1.12e-54 179
Msa0608400 AT5G14490.4 50.532 188 88 3 26 213 36 218 3.03e-54 179
Msa0608400 AT5G14490.1 50.532 188 88 3 26 213 39 221 3.07e-54 179
Msa0608400 AT5G14490.3 50.532 188 88 3 26 213 39 221 4.36e-54 179
Msa0608400 AT3G01600.1 45.972 211 98 4 15 210 7 216 5.46e-50 169
Msa0608400 AT3G04060.1 31.667 180 98 6 40 211 12 174 1.80e-15 75.9
Msa0608400 AT5G61430.1 34.965 143 75 5 48 189 16 141 3.51e-15 75.1
Msa0608400 AT5G18270.2 32.778 180 94 7 41 211 14 175 8.12e-15 73.9
Msa0608400 AT5G53950.1 31.959 194 97 9 37 218 9 179 4.65e-14 72.0
Msa0608400 AT5G39610.1 34.722 144 74 5 48 189 20 145 5.33e-14 70.9
Msa0608400 AT5G07680.2 30.769 169 93 5 48 209 3 154 8.48e-14 70.9
Msa0608400 AT1G02230.1 31.638 177 95 7 49 218 4 161 8.86e-14 71.2
Msa0608400 AT5G07680.1 30.769 169 93 5 48 209 17 168 9.10e-14 70.9
Msa0608400 AT1G01720.1 32.000 150 83 5 42 190 1 132 1.20e-13 70.1
Msa0608400 AT4G36160.1 32.738 168 86 7 47 206 9 157 1.33e-13 70.5
Msa0608400 AT4G36160.3 32.738 168 86 7 47 206 9 157 1.33e-13 70.5
Msa0608400 AT4G36160.2 32.738 168 86 7 47 206 13 161 1.67e-13 70.5
Msa0608400 AT5G04410.1 30.000 170 93 6 48 209 9 160 2.62e-13 70.1
Msa0608400 AT1G02220.1 33.566 143 74 6 49 188 4 128 6.89e-13 68.6
Msa0608400 AT1G12260.1 30.058 173 94 8 42 206 1 154 1.51e-12 67.8
Msa0608400 AT1G12260.2 30.058 173 94 8 42 206 1 154 1.66e-12 67.4
Msa0608400 AT5G46590.1 29.697 165 94 7 48 205 6 155 2.30e-12 66.2
Msa0608400 AT2G33480.1 30.872 149 82 6 48 195 15 143 6.23e-12 65.1
Msa0608400 AT2G33480.2 29.878 164 92 7 48 208 15 158 6.23e-12 64.7
Msa0608400 AT5G46590.2 31.081 148 85 6 48 193 6 138 7.63e-12 64.7
Msa0608400 AT5G08790.1 31.250 144 80 5 48 190 7 132 7.83e-12 64.7
Msa0608400 AT5G13180.1 33.562 146 72 8 48 189 14 138 2.14e-11 63.2
Msa0608400 AT1G34190.1 31.293 147 79 6 51 193 19 147 2.19e-11 64.3
Msa0608400 AT1G62700.1 29.480 173 95 7 42 206 1 154 2.53e-11 63.9
Msa0608400 AT1G62700.2 29.480 173 95 7 42 206 1 154 2.53e-11 63.9
Msa0608400 AT1G34180.1 31.544 149 78 7 51 195 19 147 3.39e-11 63.9
Msa0608400 AT1G76420.1 29.834 181 94 8 47 216 21 179 3.43e-11 63.2
Msa0608400 AT1G61110.1 32.877 146 79 6 46 189 14 142 3.58e-11 63.2
Msa0608400 AT3G12977.1 25.103 243 123 9 48 276 18 215 4.71e-11 62.4
Msa0608400 AT1G34180.3 31.544 149 78 7 51 195 19 147 5.20e-11 63.2
Msa0608400 AT4G10350.1 28.402 169 94 6 47 206 8 158 6.74e-11 62.4

Find 94 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAAAGACTCTATTCT+TGG 0.244819 4_2:+55480508 Msa0608400:CDS
CCTACTCTTGAAGGAGAAAA+TGG 0.244985 4_2:+55477321 Msa0608400:CDS
AGAAAAGATATCTCTATAAA+TGG 0.286637 4_2:+55476676 Msa0608400:five_prime_UTR
CTTGTACTTTACACAAACTA+TGG 0.313224 4_2:+55480343 Msa0608400:CDS
TTCATTTGAAAACTATACTA+TGG 0.315540 4_2:+55480912 Msa0608400:three_prime_UTR
TCAAGAGATTCTTGAACATT+TGG 0.316828 4_2:+55477242 Msa0608400:CDS
GAAAGGCAGAGAAAACAAAT+TGG 0.326530 4_2:+55480374 Msa0608400:CDS
GAAAATGGTAGGGAAGAATT+AGG 0.340166 4_2:+55480880 Msa0608400:three_prime_UTR
TTTAATTAAGGACCTGATCT+TGG 0.351490 4_2:-55476835 None:intergenic
TATATACCTGGTAGTTTCTC+TGG 0.365477 4_2:-55477360 None:intergenic
GCTCTAGTTAGGATGGAAAA+TGG 0.378110 4_2:+55480865 Msa0608400:three_prime_UTR
CCATCCTAACTAGAGCATAT+AGG 0.392802 4_2:-55480858 None:intergenic
GGTGAAAGAAATGGCGGATC+AGG 0.399922 4_2:-55480174 None:intergenic
ATTGAAGGGTAATTATTAAG+AGG 0.400064 4_2:+55480737 Msa0608400:three_prime_UTR
ATGTTAATCTTTACCAAGCA+TGG 0.400367 4_2:-55481065 None:intergenic
TTCACTCCAGCTGGCAATCC+AGG 0.423620 4_2:-55477204 None:intergenic
CACTTGAATCAAGGATTGAA+TGG 0.428533 4_2:-55480691 None:intergenic
AAATATTTCAGCAGTGTCAT+AGG 0.430428 4_2:+55481028 Msa0608400:three_prime_UTR
CATAGTTTGTGTAAAGTACA+AGG 0.433161 4_2:-55480342 None:intergenic
ATAACCTATATGCTCTAGTT+AGG 0.436331 4_2:+55480854 Msa0608400:three_prime_UTR
ATCATATATGTGCCCATGCT+TGG 0.437157 4_2:+55481052 Msa0608400:three_prime_UTR
GAGTTCATCCCTACTCTTGA+AGG 0.437508 4_2:+55477312 Msa0608400:CDS
GCTATAGAAGATTAAATTGA+AGG 0.437520 4_2:+55480722 Msa0608400:three_prime_UTR
TAAGAGGCCAATAATTGAAA+AGG 0.437585 4_2:+55480753 Msa0608400:three_prime_UTR
TGATCCGCCATTTCTTTCAC+CGG 0.439231 4_2:+55480176 Msa0608400:CDS
CTTGTCCACCACTTGAATCA+AGG 0.444328 4_2:-55480700 None:intergenic
TGTTCCTGTTGTGTATGCCT+TGG 0.446215 4_2:-55480203 None:intergenic
GAAACCCGTTGGCATAAAAC+AGG 0.460349 4_2:+55480268 Msa0608400:CDS
AACTTGGAATTGTTGTAGAC+TGG 0.461374 4_2:-55480301 None:intergenic
TCTTCAGGAGTAAGCAAAGA+TGG 0.468322 4_2:+55480151 Msa0608400:intron
CCATCCAAGGCATACACAAC+AGG 0.469431 4_2:+55480199 Msa0608400:CDS
CTCTATAAATGGAATGATTG+AGG 0.481258 4_2:+55476687 Msa0608400:five_prime_UTR
GAATTACCACCACACTGTCT+TGG 0.486516 4_2:-55480481 None:intergenic
TTGTGTATGCCTTGGATGGC+CGG 0.487616 4_2:-55480195 None:intergenic
GACTTACCTGGATTGCCAGC+TGG 0.488076 4_2:+55477198 Msa0608400:CDS
CTATTGCTATATAAAACAAA+TGG 0.490711 4_2:-55476629 None:intergenic
AATTTCATATCATTTGATCA+AGG 0.491183 4_2:+55480616 Msa0608400:CDS
AAAGGCAGAGAAAACAAATT+GGG 0.493263 4_2:+55480375 Msa0608400:CDS
GTGATGCATCAGTATCATCT+TGG 0.493893 4_2:+55480397 Msa0608400:CDS
CCTATATGCTCTAGTTAGGA+TGG 0.494711 4_2:+55480858 Msa0608400:three_prime_UTR
TTGAGTTTGATAGAAAACTT+TGG 0.497854 4_2:-55480458 None:intergenic
TAGTTAGGATGGAAAATGGT+AGG 0.499974 4_2:+55480869 Msa0608400:three_prime_UTR
ATTTCATATCATTTGATCAA+GGG 0.503525 4_2:+55480617 Msa0608400:CDS
GAGCATTGCTAGATCTATGT+TGG 0.506944 4_2:-55480642 None:intergenic
TAATAAAAGTGATAGAGAAA+AGG 0.506987 4_2:-55476532 None:intergenic
TGATGCATCAGTATCATCTT+GGG 0.507024 4_2:+55480398 Msa0608400:CDS
TCATATCAAAGGCCAAGATC+AGG 0.512974 4_2:+55476823 Msa0608400:CDS
TCTTGAACATTTGGAAGCAA+AGG 0.515614 4_2:+55477251 Msa0608400:CDS
GGATCAAACTTCACTCCAGC+TGG 0.519384 4_2:-55477213 None:intergenic
CATTCAATCCTTGATTCAAG+TGG 0.522358 4_2:+55480692 Msa0608400:exon
AGAACGGTTGAGTTAAGAGA+GGG 0.522898 4_2:-55476578 None:intergenic
AATAATAGCATCACAGTGGA+TGG 0.523592 4_2:+55476758 Msa0608400:CDS
GGGATGAACTCATCAATTAG+AGG 0.528142 4_2:-55477300 None:intergenic
TACAACAATTCCAAGTTGAA+AGG 0.529222 4_2:+55480307 Msa0608400:CDS
AAACTATGGAAAACAAAGAA+AGG 0.529627 4_2:+55480357 Msa0608400:CDS
TCAAGAATCTCTTGATCTGT+AGG 0.534425 4_2:-55477234 None:intergenic
TGGATGGCCGGTGAAAGAAA+TGG 0.540700 4_2:-55480183 None:intergenic
CATCACAGTGGATGGAAGAA+AGG 0.544845 4_2:+55476766 Msa0608400:CDS
GGTGGAATTAATGACTTACC+TGG 0.548384 4_2:+55477186 Msa0608400:CDS
TCAATCCTTGATTCAAGTGG+TGG 0.549183 4_2:+55480695 Msa0608400:exon
CCTGTTGTGTATGCCTTGGA+TGG 0.549971 4_2:-55480199 None:intergenic
TGTTAATCTTTACCAAGCAT+GGG 0.557790 4_2:-55481064 None:intergenic
AGTGATGAAGAAGAGAAAGA+AGG 0.559824 4_2:+55480421 Msa0608400:CDS
GGAACAGAAACTAAAAGAGA+AGG 0.560294 4_2:-55476608 None:intergenic
GAGAACGGTTGAGTTAAGAG+AGG 0.560818 4_2:-55476579 None:intergenic
TTTCTTTCACCGGCCATCCA+AGG 0.565155 4_2:+55480186 Msa0608400:CDS
GAAGGGTCAAAGTGGGAATG+AGG 0.565748 4_2:+55480540 Msa0608400:CDS
AAGAGAAGGGACAGAGAGAA+CGG 0.572639 4_2:-55476594 None:intergenic
AAACTATGAAGGGTCAAAGT+GGG 0.577178 4_2:+55480533 Msa0608400:CDS
AGTTAGGATGGAAAATGGTA+GGG 0.578493 4_2:+55480870 Msa0608400:three_prime_UTR
AGTGGGAATGAGGTAATCAA+TGG 0.579023 4_2:+55480550 Msa0608400:CDS
ACATGTGGTCATCATATCAA+AGG 0.587928 4_2:+55476812 Msa0608400:CDS
CTATAGAAGATTAAATTGAA+GGG 0.588583 4_2:+55480723 Msa0608400:three_prime_UTR
TGCAACTACTTGTTGAAGTG+TGG 0.591394 4_2:-55476468 None:intergenic
GAACAGAAACTAAAAGAGAA+GGG 0.591832 4_2:-55476607 None:intergenic
ACTCATCCAGAGAAACTACC+AGG 0.603901 4_2:+55477354 Msa0608400:CDS
AAAACTATGAAGGGTCAAAG+TGG 0.604850 4_2:+55480532 Msa0608400:CDS
GTACATTCGGATCACGAGGA+CGG 0.605336 4_2:+55480241 Msa0608400:CDS
TTCAACAAGTAGTTGCATGA+GGG 0.606047 4_2:+55476474 Msa0608400:five_prime_UTR
GGATGAACTCATCAATTAGA+GGG 0.619021 4_2:-55477299 None:intergenic
TCAACAAGTAGTTGCATGAG+GGG 0.632583 4_2:+55476475 Msa0608400:five_prime_UTR
GCAACTACTTGTTGAAGTGT+GGG 0.633027 4_2:-55476467 None:intergenic
ATTAGAACTTGTCTCACATG+TGG 0.635438 4_2:+55476797 Msa0608400:CDS
AACATTTGGAAGCAAAGGTG+CGG 0.636725 4_2:+55477256 Msa0608400:CDS
CTACTTGTTGAAGTGTGGGA+AGG 0.641423 4_2:-55476463 None:intergenic
AGGACGGAAGCGAAACCCGT+TGG 0.648723 4_2:+55480257 Msa0608400:CDS
CTTCAACAAGTAGTTGCATG+AGG 0.652525 4_2:+55476473 Msa0608400:five_prime_UTR
CAAAGTATATATTAATACTG+AGG 0.662016 4_2:+55480783 Msa0608400:three_prime_UTR
TTGTTGAAGACTCAAGCGAG+AGG 0.675322 4_2:+55480973 Msa0608400:three_prime_UTR
AAAAGTACATTCGGATCACG+AGG 0.691199 4_2:+55480237 Msa0608400:CDS
AAACAATAATAGCATCACAG+TGG 0.704092 4_2:+55476754 Msa0608400:CDS
ATGGCCGGTGAAAGAAATGG+CGG 0.706386 4_2:-55480180 None:intergenic
CAAACTCAACCAAGACAGTG+TGG 0.711030 4_2:+55480472 Msa0608400:CDS
ACTCAACCAAGACAGTGTGG+TGG 0.739755 4_2:+55480475 Msa0608400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGTTATTAATTTCT+AGG - chr4_2:55477100-55477119 None:intergenic 10.0%
!! ATATCAATGAAAAATAATTA+GGG + chr4_2:55477162-55477181 Msa0608400:intron 10.0%
!!! TAATTGATGATTTTTTTTTA+AGG + chr4_2:55478164-55478183 Msa0608400:intron 10.0%
!!! AATTGATGATTTTTTTTTAA+GGG + chr4_2:55478165-55478184 Msa0608400:intron 10.0%
!! TTTCAAGATAAATTAATAAA+AGG + chr4_2:55478413-55478432 Msa0608400:intron 10.0%
!!! AAAACTATTTTTCAATAAAT+TGG - chr4_2:55478490-55478509 None:intergenic 10.0%
!!! TTCTTTAGTTTTATTTATTT+GGG - chr4_2:55479545-55479564 None:intergenic 10.0%
!!! TTTCTTTAGTTTTATTTATT+TGG - chr4_2:55479546-55479565 None:intergenic 10.0%
!!! ATTTAATTTACTCAAAAAAT+TGG + chr4_2:55479862-55479881 Msa0608400:intron 10.0%
!! ATGATAAATAATGTTTATCA+TGG - chr4_2:55476871-55476890 None:intergenic 15.0%
!!! AGTCCTTATTTTAATTTTAT+AGG + chr4_2:55476954-55476973 Msa0608400:intron 15.0%
!!! GTCCTTATTTTAATTTTATA+GGG + chr4_2:55476955-55476974 Msa0608400:intron 15.0%
!!! AACTTTTTTTTCTTTTAGTT+TGG + chr4_2:55477110-55477129 Msa0608400:intron 15.0%
!! GATATCAATGAAAAATAATT+AGG + chr4_2:55477161-55477180 Msa0608400:intron 15.0%
!!! ATAAGTTTACCTTTTATTTT+TGG + chr4_2:55477461-55477480 Msa0608400:intron 15.0%
!! CATATTTAACCAAAAATAAA+AGG - chr4_2:55477473-55477492 None:intergenic 15.0%
!! ACATTAAAATATACATAAGT+TGG - chr4_2:55477616-55477635 None:intergenic 15.0%
!!! AAAGTGAAATTTATTTTTAG+AGG + chr4_2:55477872-55477891 Msa0608400:intron 15.0%
!!! AAGTGAAATTTATTTTTAGA+GGG + chr4_2:55477873-55477892 Msa0608400:intron 15.0%
!!! TTTATTTTCATTGAATAACA+TGG + chr4_2:55477948-55477967 Msa0608400:intron 15.0%
!! AAATTAACATTTCAATATTC+AGG + chr4_2:55478118-55478137 Msa0608400:intron 15.0%
!!! TCTTTATTAGTTTTTAACAA+TGG - chr4_2:55478228-55478247 None:intergenic 15.0%
!! CTAAGATTATAAGAATTATT+AGG - chr4_2:55478467-55478486 None:intergenic 15.0%
!!! TTTTTTTTAAGTAAGATACA+TGG - chr4_2:55478564-55478583 None:intergenic 15.0%
!! TGAAAATAAAATTGTAATGT+TGG - chr4_2:55479025-55479044 None:intergenic 15.0%
!! CAATATTCATATAAACTTAA+TGG - chr4_2:55479213-55479232 None:intergenic 15.0%
!! CATTAAGTTTATATGAATAT+TGG + chr4_2:55479211-55479230 Msa0608400:intron 15.0%
!!! TTAATATTTTTCTTATGTTG+CGG + chr4_2:55479254-55479273 Msa0608400:intron 15.0%
!!! ATTTTTTATTTGAGTTTATG+AGG - chr4_2:55479581-55479600 None:intergenic 15.0%
!! TCATAAACTCAAATAAAAAA+TGG + chr4_2:55479580-55479599 Msa0608400:intron 15.0%
!! CATAAACTCAAATAAAAAAT+GGG + chr4_2:55479581-55479600 Msa0608400:intron 15.0%
!! ATAAACTCAAATAAAAAATG+GGG + chr4_2:55479582-55479601 Msa0608400:intron 15.0%
!! AAATTGAATTATATTTCTTC+AGG + chr4_2:55480136-55480155 Msa0608400:intron 15.0%
!! TAATAAAAGTGATAGAGAAA+AGG - chr4_2:55476535-55476554 None:intergenic 20.0%
!! CTATTGCTATATAAAACAAA+TGG - chr4_2:55476632-55476651 None:intergenic 20.0%
!! AGAAAAGATATCTCTATAAA+TGG + chr4_2:55476676-55476695 Msa0608400:five_prime_UTR 20.0%
!! GTCCCTATAAAATTAAAATA+AGG - chr4_2:55476960-55476979 None:intergenic 20.0%
!!! ATGGTGATTGAAAATTTTAT+AGG - chr4_2:55477573-55477592 None:intergenic 20.0%
!! TTAAAAATAGGGACAAAAAA+TGG - chr4_2:55477592-55477611 None:intergenic 20.0%
!! TATGAGTTTACTTAAAATGA+TGG + chr4_2:55477814-55477833 Msa0608400:intron 20.0%
!! TGTGATTTAATTAGCATAAA+TGG - chr4_2:55478065-55478084 None:intergenic 20.0%
!! TGAAATTAAAATGATAGAGA+AGG - chr4_2:55478093-55478112 None:intergenic 20.0%
!! AATATTCAGGCTAATAATAA+TGG + chr4_2:55478131-55478150 Msa0608400:intron 20.0%
!! AAGATTCATTGATATAAACT+AGG + chr4_2:55478748-55478767 Msa0608400:intron 20.0%
!! AGATTCATTGATATAAACTA+GGG + chr4_2:55478749-55478768 Msa0608400:intron 20.0%
!! GTTTACATTTCTTACATTAT+AGG - chr4_2:55479089-55479108 None:intergenic 20.0%
!! AGTTATGGGTTTATAATTTA+GGG - chr4_2:55479452-55479471 None:intergenic 20.0%
!!! TCTACACTTTTAAACATTTT+TGG + chr4_2:55479471-55479490 Msa0608400:intron 20.0%
!! CAAACTCTAATATCAAATTA+GGG - chr4_2:55479520-55479539 None:intergenic 20.0%
!! ACAAACTCTAATATCAAATT+AGG - chr4_2:55479521-55479540 None:intergenic 20.0%
!! AACTAAAGAAAATATGATAG+AGG + chr4_2:55479555-55479574 Msa0608400:intron 20.0%
!! TAAACTCAAATAAAAAATGG+GGG + chr4_2:55479583-55479602 Msa0608400:intron 20.0%
!!! ATGAATTTGATAACAAATCT+GGG - chr4_2:55479672-55479691 None:intergenic 20.0%
!!! ATTTGTTATCAAATTCATCA+CGG + chr4_2:55479674-55479693 Msa0608400:intron 20.0%
!!! AATATTGACATTTTACTATG+TGG + chr4_2:55479793-55479812 Msa0608400:intron 20.0%
!!! TTTTTTGTCTAATTGTGAAT+TGG - chr4_2:55479954-55479973 None:intergenic 20.0%
!!! AAAAAGAAGAAAAGTACATT+CGG + chr4_2:55480228-55480247 Msa0608400:CDS 20.0%
!! AATTTCATATCATTTGATCA+AGG + chr4_2:55480616-55480635 Msa0608400:CDS 20.0%
!! ATTTCATATCATTTGATCAA+GGG + chr4_2:55480617-55480636 Msa0608400:CDS 20.0%
!! CTATAGAAGATTAAATTGAA+GGG + chr4_2:55480723-55480742 Msa0608400:three_prime_UTR 20.0%
!! CAAAGTATATATTAATACTG+AGG + chr4_2:55480783-55480802 Msa0608400:three_prime_UTR 20.0%
!! TTCATTTGAAAACTATACTA+TGG + chr4_2:55480912-55480931 Msa0608400:three_prime_UTR 20.0%
!!! TGATGCTATTATTGTTTTGA+GGG - chr4_2:55476751-55476770 None:intergenic 25.0%
! GTAGAGACTAAATTAAAAAG+TGG + chr4_2:55477062-55477081 Msa0608400:intron 25.0%
! TCAATGAAAAATAATTAGGG+TGG + chr4_2:55477165-55477184 Msa0608400:intron 25.0%
!! CATAAGTTGGCTTAAAAATA+GGG - chr4_2:55477603-55477622 None:intergenic 25.0%
!! ACATAAGTTGGCTTAAAAAT+AGG - chr4_2:55477604-55477623 None:intergenic 25.0%
! TGGCAGTTAAAAATTGATAT+TGG - chr4_2:55477677-55477696 None:intergenic 25.0%
!!! TGAAAACGGAAATTTTTTGA+AGG + chr4_2:55477845-55477864 Msa0608400:intron 25.0%
! GCTAATAATAATGGTTAAGA+GGG + chr4_2:55478140-55478159 Msa0608400:intron 25.0%
! GTGCTTATAAAAATAGACAA+GGG - chr4_2:55478262-55478281 None:intergenic 25.0%
! AGTGCTTATAAAAATAGACA+AGG - chr4_2:55478263-55478282 None:intergenic 25.0%
! AACATTGCATATATTATGCA+AGG + chr4_2:55478694-55478713 Msa0608400:intron 25.0%
! GATTCATTGATATAAACTAG+GGG + chr4_2:55478750-55478769 Msa0608400:intron 25.0%
! AAATTCAAACCAAACAAATG+CGG + chr4_2:55478870-55478889 Msa0608400:intron 25.0%
!!! TTTTGACTCGATTTTAATGT+TGG - chr4_2:55478948-55478967 None:intergenic 25.0%
! TAGAGACTAAATTAAAAACG+TGG + chr4_2:55479053-55479072 Msa0608400:intron 25.0%
!! GTTTATATGAATATTGGTCT+AGG + chr4_2:55479217-55479236 Msa0608400:intron 25.0%
!!! TTCTTTTTTATACAACCGTA+TGG - chr4_2:55479332-55479351 None:intergenic 25.0%
! GTTATGGGTTTATAATTTAG+GGG - chr4_2:55479451-55479470 None:intergenic 25.0%
! GAGTTATGGGTTTATAATTT+AGG - chr4_2:55479453-55479472 None:intergenic 25.0%
!! GTTTAAAAGTGTAGAGTTAT+GGG - chr4_2:55479466-55479485 None:intergenic 25.0%
!! TGTTTAAAAGTGTAGAGTTA+TGG - chr4_2:55479467-55479486 None:intergenic 25.0%
!! GTTTTGTCAAATATCAATGA+GGG + chr4_2:55479635-55479654 Msa0608400:intron 25.0%
!! GATGAATTTGATAACAAATC+TGG - chr4_2:55479673-55479692 None:intergenic 25.0%
!!! TGACTTTCTGTTGATTTTAT+AGG - chr4_2:55479749-55479768 None:intergenic 25.0%
! AATCAACAGAAAGTCAATAT+TGG + chr4_2:55479753-55479772 Msa0608400:intron 25.0%
!! TTTCTATTAGTTTGAACTCA+AGG - chr4_2:55479914-55479933 None:intergenic 25.0%
! GAGTTCAAACTAATAGAAAA+AGG + chr4_2:55479915-55479934 Msa0608400:intron 25.0%
! TAGTACAAGACAAATAGTTT+AGG + chr4_2:55480001-55480020 Msa0608400:intron 25.0%
!!! ATAGTTTAGGATGCTTTTTA+AGG + chr4_2:55480014-55480033 Msa0608400:intron 25.0%
!!! TTTTTTGTAACCTTTCAACT+TGG - chr4_2:55480320-55480339 None:intergenic 25.0%
! AAACTATGGAAAACAAAGAA+AGG + chr4_2:55480357-55480376 Msa0608400:CDS 25.0%
! TTGAGTTTGATAGAAAACTT+TGG - chr4_2:55480461-55480480 None:intergenic 25.0%
! ATTATGAAAGACTCTATTCT+TGG + chr4_2:55480508-55480527 Msa0608400:CDS 25.0%
! TATTCTTGGAAAAACTATGA+AGG + chr4_2:55480522-55480541 Msa0608400:CDS 25.0%
! ATTCTTGGAAAAACTATGAA+GGG + chr4_2:55480523-55480542 Msa0608400:CDS 25.0%
! GCTATAGAAGATTAAATTGA+AGG + chr4_2:55480722-55480741 Msa0608400:three_prime_UTR 25.0%
! ATTGAAGGGTAATTATTAAG+AGG + chr4_2:55480737-55480756 Msa0608400:three_prime_UTR 25.0%
!! TTCATCTCCTTTTCAATTAT+TGG - chr4_2:55480763-55480782 None:intergenic 25.0%
GAACAGAAACTAAAAGAGAA+GGG - chr4_2:55476610-55476629 None:intergenic 30.0%
CTCTATAAATGGAATGATTG+AGG + chr4_2:55476687-55476706 Msa0608400:five_prime_UTR 30.0%
GAATGATTGAGGAAAAAAAG+AGG + chr4_2:55476698-55476717 Msa0608400:five_prime_UTR 30.0%
GAGGAAAAAAAGAGGAAAAA+AGG + chr4_2:55476706-55476725 Msa0608400:five_prime_UTR 30.0%
!! GTGATGCTATTATTGTTTTG+AGG - chr4_2:55476752-55476771 None:intergenic 30.0%
AAACAATAATAGCATCACAG+TGG + chr4_2:55476754-55476773 Msa0608400:CDS 30.0%
TTTAATTAAGGACCTGATCT+TGG - chr4_2:55476838-55476857 None:intergenic 30.0%
TCAGGTCCTTAATTAAAACT+TGG + chr4_2:55476841-55476860 Msa0608400:intron 30.0%
!!! GGCAAACCAAGTTTTAATTA+AGG - chr4_2:55476850-55476869 None:intergenic 30.0%
ATGAAAAATAATTAGGGTGG+TGG + chr4_2:55477168-55477187 Msa0608400:intron 30.0%
TCAAGAGATTCTTGAACATT+TGG + chr4_2:55477242-55477261 Msa0608400:CDS 30.0%
! AGGAGTATGTAATATATACC+TGG - chr4_2:55477375-55477394 None:intergenic 30.0%
GTATATATTACATACTCCTC+CGG + chr4_2:55477376-55477395 Msa0608400:intron 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG - chr4_2:55477544-55477563 None:intergenic 30.0%
TTATAGGTACTAAAAGTCGA+AGG - chr4_2:55477557-55477576 None:intergenic 30.0%
TGATGGAACAAAAGTGAAAA+CGG + chr4_2:55477831-55477850 Msa0608400:intron 30.0%
! CGTTGAAGTAACATTTTTGT+AGG + chr4_2:55478028-55478047 Msa0608400:intron 30.0%
GGCTAATAATAATGGTTAAG+AGG + chr4_2:55478139-55478158 Msa0608400:intron 30.0%
!!! AATGGATTAGAACTTTTGAC+CGG - chr4_2:55478210-55478229 None:intergenic 30.0%
CATAATATATGCAATGTTCG+AGG - chr4_2:55478692-55478711 None:intergenic 30.0%
!!! TACTTTTTCATCTTGCTGTT+CGG - chr4_2:55478819-55478838 None:intergenic 30.0%
! ATTTTTCTTATGTTGCGGTT+TGG + chr4_2:55479259-55479278 Msa0608400:intron 30.0%
! TTTTATACAACCGTATGGTT+TGG - chr4_2:55479327-55479346 None:intergenic 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG + chr4_2:55479416-55479435 Msa0608400:intron 30.0%
!! GGTTTTGTCAAATATCAATG+AGG + chr4_2:55479634-55479653 Msa0608400:intron 30.0%
! AATTTGATAACAAATCTGGG+TGG - chr4_2:55479669-55479688 None:intergenic 30.0%
CATTAAAATAGCAATGCCAT+GGG - chr4_2:55479726-55479745 None:intergenic 30.0%
AGCTTGATAAATAAGAAGCT+AGG - chr4_2:55480075-55480094 None:intergenic 30.0%
! TTTTACCTGTTTTATGCCAA+CGG - chr4_2:55480276-55480295 None:intergenic 30.0%
! TACAACAATTCCAAGTTGAA+AGG + chr4_2:55480307-55480326 Msa0608400:CDS 30.0%
! CATAGTTTGTGTAAAGTACA+AGG - chr4_2:55480345-55480364 None:intergenic 30.0%
CTTGTACTTTACACAAACTA+TGG + chr4_2:55480343-55480362 Msa0608400:CDS 30.0%
AAAGGCAGAGAAAACAAATT+GGG + chr4_2:55480375-55480394 Msa0608400:CDS 30.0%
TAAGAGGCCAATAATTGAAA+AGG + chr4_2:55480753-55480772 Msa0608400:three_prime_UTR 30.0%
ATAACCTATATGCTCTAGTT+AGG + chr4_2:55480854-55480873 Msa0608400:three_prime_UTR 30.0%
! ATGGATCAGATTCTTTTGTT+AGG + chr4_2:55480931-55480950 Msa0608400:three_prime_UTR 30.0%
AAATATTTCAGCAGTGTCAT+AGG + chr4_2:55481028-55481047 Msa0608400:three_prime_UTR 30.0%
TTCAACAAGTAGTTGCATGA+GGG + chr4_2:55476474-55476493 Msa0608400:five_prime_UTR 35.0%
GGAACAGAAACTAAAAGAGA+AGG - chr4_2:55476611-55476630 None:intergenic 35.0%
AATAATAGCATCACAGTGGA+TGG + chr4_2:55476758-55476777 Msa0608400:CDS 35.0%
ATTAGAACTTGTCTCACATG+TGG + chr4_2:55476797-55476816 Msa0608400:CDS 35.0%
ACATGTGGTCATCATATCAA+AGG + chr4_2:55476812-55476831 Msa0608400:CDS 35.0%
TAGGGACTAATGTAATGACT+AGG + chr4_2:55476973-55476992 Msa0608400:intron 35.0%
TCAAGAATCTCTTGATCTGT+AGG - chr4_2:55477237-55477256 None:intergenic 35.0%
TCTTGAACATTTGGAAGCAA+AGG + chr4_2:55477251-55477270 Msa0608400:CDS 35.0%
GGATGAACTCATCAATTAGA+GGG - chr4_2:55477302-55477321 None:intergenic 35.0%
! CATTTTCTCCTTCAAGAGTA+GGG - chr4_2:55477323-55477342 None:intergenic 35.0%
TATATACCTGGTAGTTTCTC+TGG - chr4_2:55477363-55477382 None:intergenic 35.0%
! TGATAGCTTGTATTGTACTC+CGG - chr4_2:55477398-55477417 None:intergenic 35.0%
TTGAATAACATGGTCAGAAG+TGG + chr4_2:55477958-55477977 Msa0608400:intron 35.0%
TTCATGTTGCTGAAGTCTAA+AGG - chr4_2:55477988-55478007 None:intergenic 35.0%
! CATTTTTGTAGGAGAAGATG+TGG + chr4_2:55478039-55478058 Msa0608400:intron 35.0%
! TTTTGACCGGTTGTTTAAAG+GGG - chr4_2:55478197-55478216 None:intergenic 35.0%
! CTTTTGACCGGTTGTTTAAA+GGG - chr4_2:55478198-55478217 None:intergenic 35.0%
! ACTTTTGACCGGTTGTTTAA+AGG - chr4_2:55478199-55478218 None:intergenic 35.0%
ATGTATTCGTGTCAGATACA+TGG - chr4_2:55478611-55478630 None:intergenic 35.0%
!!! CATCACTCATTTTGAAGTGT+CGG + chr4_2:55478628-55478647 Msa0608400:intron 35.0%
!!! ATCACTCATTTTGAAGTGTC+GGG + chr4_2:55478629-55478648 Msa0608400:intron 35.0%
!!! GGGTTCATAGATTTTTTTGG+TGG + chr4_2:55478651-55478670 Msa0608400:intron 35.0%
!!! TAGATTTTTTTGGTGGTGTC+TGG + chr4_2:55478658-55478677 Msa0608400:intron 35.0%
!!! AGATTTTTTTGGTGGTGTCT+GGG + chr4_2:55478659-55478678 Msa0608400:intron 35.0%
! CAGCAAGATGAAAAAGTATG+CGG + chr4_2:55478821-55478840 Msa0608400:intron 35.0%
ACCAAACAAATGCGGTTTAT+TGG + chr4_2:55478878-55478897 Msa0608400:intron 35.0%
TCCAATAAACCGCATTTGTT+TGG - chr4_2:55478882-55478901 None:intergenic 35.0%
ACAAATGCGGTTTATTGGAT+TGG + chr4_2:55478883-55478902 Msa0608400:intron 35.0%
!! GCATTTGGTTTGGATGTATT+CGG - chr4_2:55479357-55479376 None:intergenic 35.0%
GAATACATCCAAACCAAATG+CGG + chr4_2:55479356-55479375 Msa0608400:intron 35.0%
ACAAAAAACCGCATTTGGTT+TGG - chr4_2:55479367-55479386 None:intergenic 35.0%
!!! AAACCAAATGCGGTTTTTTG+TGG + chr4_2:55479366-55479385 Msa0608400:intron 35.0%
AAACCACAAAAAACCGCATT+TGG - chr4_2:55479372-55479391 None:intergenic 35.0%
!!! AATGCGGTTTTTTGTGGTTT+CGG + chr4_2:55479372-55479391 Msa0608400:intron 35.0%
! TTTGTGGTTTCGGTTTGAAT+TGG + chr4_2:55479382-55479401 Msa0608400:intron 35.0%
!! GTTTGAATTGGTTTGGTTTG+CGG + chr4_2:55479394-55479413 Msa0608400:intron 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG + chr4_2:55479406-55479425 Msa0608400:intron 35.0%
! TTGCGGTTTTTCTATTGGAT+TGG + chr4_2:55479411-55479430 Msa0608400:intron 35.0%
ATGGGGGATAAATTCTAAAC+CGG + chr4_2:55479599-55479618 Msa0608400:intron 35.0%
CTTAGCTTCAAATATACCCA+TGG + chr4_2:55479707-55479726 Msa0608400:intron 35.0%
GCATTAAAATAGCAATGCCA+TGG - chr4_2:55479727-55479746 None:intergenic 35.0%
!!! AGGATGCTTTTTAAGGTTGA+TGG + chr4_2:55480021-55480040 Msa0608400:intron 35.0%
GAAGCTAGGTACAAAGTTAT+GGG - chr4_2:55480061-55480080 None:intergenic 35.0%
AGAAGCTAGGTACAAAGTTA+TGG - chr4_2:55480062-55480081 None:intergenic 35.0%
TGTTAATTCACTACTGCAGA+TGG - chr4_2:55480113-55480132 None:intergenic 35.0%
! TTTACCTGTTTTATGCCAAC+GGG - chr4_2:55480275-55480294 None:intergenic 35.0%
AACTTGGAATTGTTGTAGAC+TGG - chr4_2:55480304-55480323 None:intergenic 35.0%
GAAAGGCAGAGAAAACAAAT+TGG + chr4_2:55480374-55480393 Msa0608400:CDS 35.0%
TGATGCATCAGTATCATCTT+GGG + chr4_2:55480398-55480417 Msa0608400:CDS 35.0%
AGTGATGAAGAAGAGAAAGA+AGG + chr4_2:55480421-55480440 Msa0608400:CDS 35.0%
AAAACTATGAAGGGTCAAAG+TGG + chr4_2:55480532-55480551 Msa0608400:CDS 35.0%
AAACTATGAAGGGTCAAAGT+GGG + chr4_2:55480533-55480552 Msa0608400:CDS 35.0%
AATGGCAAAAACAGTACTAG+TGG + chr4_2:55480568-55480587 Msa0608400:CDS 35.0%
CACTTGAATCAAGGATTGAA+TGG - chr4_2:55480694-55480713 None:intergenic 35.0%
CATTCAATCCTTGATTCAAG+TGG + chr4_2:55480692-55480711 Msa0608400:exon 35.0%
TAGTTAGGATGGAAAATGGT+AGG + chr4_2:55480869-55480888 Msa0608400:three_prime_UTR 35.0%
AGTTAGGATGGAAAATGGTA+GGG + chr4_2:55480870-55480889 Msa0608400:three_prime_UTR 35.0%
GAAAATGGTAGGGAAGAATT+AGG + chr4_2:55480880-55480899 Msa0608400:three_prime_UTR 35.0%
! GCAACTACTTGTTGAAGTGT+GGG - chr4_2:55476470-55476489 None:intergenic 40.0%
! TGCAACTACTTGTTGAAGTG+TGG - chr4_2:55476471-55476490 None:intergenic 40.0%
CTTCAACAAGTAGTTGCATG+AGG + chr4_2:55476473-55476492 Msa0608400:five_prime_UTR 40.0%
TCAACAAGTAGTTGCATGAG+GGG + chr4_2:55476475-55476494 Msa0608400:five_prime_UTR 40.0%
AGAACGGTTGAGTTAAGAGA+GGG - chr4_2:55476581-55476600 None:intergenic 40.0%
TCATATCAAAGGCCAAGATC+AGG + chr4_2:55476823-55476842 Msa0608400:CDS 40.0%
GGTGGAATTAATGACTTACC+TGG + chr4_2:55477186-55477205 Msa0608400:CDS 40.0%
AACATTTGGAAGCAAAGGTG+CGG + chr4_2:55477256-55477275 Msa0608400:CDS 40.0%
GGGATGAACTCATCAATTAG+AGG - chr4_2:55477303-55477322 None:intergenic 40.0%
! CCATTTTCTCCTTCAAGAGT+AGG - chr4_2:55477324-55477343 None:intergenic 40.0%
CCTACTCTTGAAGGAGAAAA+TGG + chr4_2:55477321-55477340 Msa0608400:CDS 40.0%
ATCAGACCCCTTTAAACAAC+CGG + chr4_2:55478188-55478207 Msa0608400:intron 40.0%
!!! TCACTCATTTTGAAGTGTCG+GGG + chr4_2:55478630-55478649 Msa0608400:intron 40.0%
!!! CGGGGGTTCATAGATTTTTT+TGG + chr4_2:55478648-55478667 Msa0608400:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG - chr4_2:55478721-55478740 None:intergenic 40.0%
!! ATATAAACTAGGGGTGTTCG+CGG + chr4_2:55478759-55478778 Msa0608400:intron 40.0%
!! TCTTATGTTGCGGTTTGGTT+CGG + chr4_2:55479264-55479283 Msa0608400:intron 40.0%
!! TACAACCGTATGGTTTGGTT+CGG - chr4_2:55479322-55479341 None:intergenic 40.0%
! GGTTTCGGTTTGAATTGGTT+TGG + chr4_2:55479387-55479406 Msa0608400:intron 40.0%
! GATCTTTTGAGCATAGACGT+CGG - chr4_2:55479498-55479517 None:intergenic 40.0%
CAAAACCAAGTTTCAGTGAC+CGG - chr4_2:55479621-55479640 None:intergenic 40.0%
TGATAACAAATCTGGGTGGA+GGG - chr4_2:55479665-55479684 None:intergenic 40.0%
! TTGATAACAAATCTGGGTGG+AGG - chr4_2:55479666-55479685 None:intergenic 40.0%
TCTTCAGGAGTAAGCAAAGA+TGG + chr4_2:55480151-55480170 Msa0608400:intron 40.0%
! AAAAGTACATTCGGATCACG+AGG + chr4_2:55480237-55480256 Msa0608400:CDS 40.0%
GTGATGCATCAGTATCATCT+TGG + chr4_2:55480397-55480416 Msa0608400:CDS 40.0%
AGTGGGAATGAGGTAATCAA+TGG + chr4_2:55480550-55480569 Msa0608400:CDS 40.0%
! GAGCATTGCTAGATCTATGT+TGG - chr4_2:55480645-55480664 None:intergenic 40.0%
TCAATCCTTGATTCAAGTGG+TGG + chr4_2:55480695-55480714 Msa0608400:exon 40.0%
CCATCCTAACTAGAGCATAT+AGG - chr4_2:55480861-55480880 None:intergenic 40.0%
CCTATATGCTCTAGTTAGGA+TGG + chr4_2:55480858-55480877 Msa0608400:three_prime_UTR 40.0%
GCTCTAGTTAGGATGGAAAA+TGG + chr4_2:55480865-55480884 Msa0608400:three_prime_UTR 40.0%
ATCATATATGTGCCCATGCT+TGG + chr4_2:55481052-55481071 Msa0608400:three_prime_UTR 40.0%
! CTACTTGTTGAAGTGTGGGA+AGG - chr4_2:55476466-55476485 None:intergenic 45.0%
GAGAACGGTTGAGTTAAGAG+AGG - chr4_2:55476582-55476601 None:intergenic 45.0%
AAGAGAAGGGACAGAGAGAA+CGG - chr4_2:55476597-55476616 None:intergenic 45.0%
CATCACAGTGGATGGAAGAA+AGG + chr4_2:55476766-55476785 Msa0608400:CDS 45.0%
GAGTTCATCCCTACTCTTGA+AGG + chr4_2:55477312-55477331 Msa0608400:CDS 45.0%
ACTCATCCAGAGAAACTACC+AGG + chr4_2:55477354-55477373 Msa0608400:CDS 45.0%
! TAGCTTGTATTGTACTCCGG+AGG - chr4_2:55477395-55477414 None:intergenic 45.0%
!!! CACTCATTTTGAAGTGTCGG+GGG + chr4_2:55478631-55478650 Msa0608400:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG - chr4_2:55478722-55478741 None:intergenic 45.0%
CCATGTGAACTTAGCTCAGT+TGG - chr4_2:55478726-55478745 None:intergenic 45.0%
CCAACTGAGCTAAGTTCACA+TGG + chr4_2:55478723-55478742 Msa0608400:intron 45.0%
!!! TACGGTTTGGTTCGGTTTTG+AGG + chr4_2:55478782-55478801 Msa0608400:intron 45.0%
!! CGGTTTGGTTCGGTTTAGTT+CGG + chr4_2:55479274-55479293 Msa0608400:intron 45.0%
!! GTATGGTTTGGTTCGGTTTG+CGG - chr4_2:55479315-55479334 None:intergenic 45.0%
GCAAACCGAACCAAACCATA+CGG + chr4_2:55479314-55479333 Msa0608400:intron 45.0%
CTAAACCGGTCACTGAAACT+TGG + chr4_2:55479613-55479632 Msa0608400:intron 45.0%
TGATCCGCCATTTCTTTCAC+CGG + chr4_2:55480176-55480195 Msa0608400:CDS 45.0%
TGTTCCTGTTGTGTATGCCT+TGG - chr4_2:55480206-55480225 None:intergenic 45.0%
GAAACCCGTTGGCATAAAAC+AGG + chr4_2:55480268-55480287 Msa0608400:CDS 45.0%
CAAACTCAACCAAGACAGTG+TGG + chr4_2:55480472-55480491 Msa0608400:CDS 45.0%
GAATTACCACCACACTGTCT+TGG - chr4_2:55480484-55480503 None:intergenic 45.0%
CTTGTCCACCACTTGAATCA+AGG - chr4_2:55480703-55480722 None:intergenic 45.0%
TTGTTGAAGACTCAAGCGAG+AGG + chr4_2:55480973-55480992 Msa0608400:three_prime_UTR 45.0%
!! GATATATATATATATATATA+AGG - chr4_2:55477504-55477523 None:intergenic 5.0%
!!! AATATGAATTTTTATATTTT+TGG - chr4_2:55477697-55477716 None:intergenic 5.0%
!!! TAATTTATAAATGATATTTT+AGG - chr4_2:55478361-55478380 None:intergenic 5.0%
GGATCAAACTTCACTCCAGC+TGG - chr4_2:55477216-55477235 None:intergenic 50.0%
!! GGTGAAAGAAATGGCGGATC+AGG - chr4_2:55480177-55480196 None:intergenic 50.0%
ATGGCCGGTGAAAGAAATGG+CGG - chr4_2:55480183-55480202 None:intergenic 50.0%
TGGATGGCCGGTGAAAGAAA+TGG - chr4_2:55480186-55480205 None:intergenic 50.0%
TTTCTTTCACCGGCCATCCA+AGG + chr4_2:55480186-55480205 Msa0608400:CDS 50.0%
TTGTGTATGCCTTGGATGGC+CGG - chr4_2:55480198-55480217 None:intergenic 50.0%
CCTGTTGTGTATGCCTTGGA+TGG - chr4_2:55480202-55480221 None:intergenic 50.0%
CCATCCAAGGCATACACAAC+AGG + chr4_2:55480199-55480218 Msa0608400:CDS 50.0%
GTACATTCGGATCACGAGGA+CGG + chr4_2:55480241-55480260 Msa0608400:CDS 50.0%
ACTCAACCAAGACAGTGTGG+TGG + chr4_2:55480475-55480494 Msa0608400:CDS 50.0%
GAAGGGTCAAAGTGGGAATG+AGG + chr4_2:55480540-55480559 Msa0608400:CDS 50.0%
GACTTACCTGGATTGCCAGC+TGG + chr4_2:55477198-55477217 Msa0608400:CDS 55.0%
TTCACTCCAGCTGGCAATCC+AGG - chr4_2:55477207-55477226 None:intergenic 55.0%
!! AACTAGGGGTGTTCGCGGTA+CGG + chr4_2:55478764-55478783 Msa0608400:intron 55.0%
!! GTTCGCGGTACGGTTTGGTT+CGG + chr4_2:55478774-55478793 Msa0608400:intron 55.0%
AGGACGGAAGCGAAACCCGT+TGG + chr4_2:55480257-55480276 Msa0608400:CDS 60.0%
! GGGGTGTTCGCGGTACGGTT+TGG + chr4_2:55478769-55478788 Msa0608400:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55476456 55481079 55476456 ID=Msa0608400;Name=Msa0608400
chr4_2 mRNA 55476456 55481079 55476456 ID=Msa0608400-mRNA-1;Parent=Msa0608400;Name=Msa0608400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=275|1|1|1|1|1|3|374|284
chr4_2 exon 55476456 55476844 55476456 ID=Msa0608400-mRNA-1:exon:14133;Parent=Msa0608400-mRNA-1
chr4_2 exon 55477183 55477375 55477183 ID=Msa0608400-mRNA-1:exon:14134;Parent=Msa0608400-mRNA-1
chr4_2 exon 55480158 55481079 55480158 ID=Msa0608400-mRNA-1:exon:14135;Parent=Msa0608400-mRNA-1
chr4_2 five_prime_UTR 55476456 55476730 55476456 ID=Msa0608400-mRNA-1:five_prime_utr;Parent=Msa0608400-mRNA-1
chr4_2 CDS 55476731 55476844 55476731 ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2 CDS 55477183 55477375 55477183 ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2 CDS 55480158 55480705 55480158 ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2 three_prime_UTR 55480706 55481079 55480706 ID=Msa0608400-mRNA-1:three_prime_utr;Parent=Msa0608400-mRNA-1
Gene Sequence

>Msa0608400

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGCGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGGCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGATCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA
Protein sequence

>Msa0608400

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*