AlfalfaGEDB | Msa0608400

M. sativa cultivar zhongmu-4 / Msa0608400

KEGG: -
GO: GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608400	XP_013456684.1	96.127	284	11	0	1	284	1	284	0.0	573

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608400	sp\|O49459\|NAC73_ARATH	78.680	197	41	1	21	217	33	228	1.52e-112	330

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0608400	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028170	Msa0608400	0.803025	4.244721e-49	-8.615850e-47
Msa0072900	Msa0608400	0.811755	5.974679e-51	-8.615850e-47
Msa0121090	Msa0608400	0.800164	1.638355e-48	-8.615850e-47
Msa0160130	Msa0608400	0.802973	4.349917e-49	-8.615850e-47
Msa0392380	Msa0608400	0.825662	4.149146e-54	-8.615850e-47
Msa0440320	Msa0608400	0.831088	2.034843e-55	-8.615850e-47
Msa0487500	Msa0608400	0.835551	1.570813e-56	-8.615850e-47
Msa0554800	Msa0608400	0.899038	2.942084e-77	-8.615850e-47
Msa0608400	Msa0615420	0.802773	4.785612e-49	-8.615850e-47
Msa0608400	Msa0626450	0.820115	8.135006e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608400	MtrunA17_Chr4g0040541	96.127	284	11	0	1	284	1	284	0.0	573
Msa0608400	MtrunA17_Chr2g0324961	79.211	279	52	4	1	277	1	275	1.91e-151	424
Msa0608400	MtrunA17_Chr4g0046431	66.790	271	76	7	13	277	32	294	2.96e-119	344
Msa0608400	MtrunA17_Chr2g0282871	60.140	286	95	8	1	274	1	279	2.39e-111	324
Msa0608400	MtrunA17_Chr8g0367761	73.239	213	50	4	13	220	32	242	3.77e-107	311
Msa0608400	MtrunA17_Chr8g0389661	73.846	195	40	4	26	214	30	219	1.76e-94	287
Msa0608400	MtrunA17_Chr5g0422431	55.838	197	82	2	19	215	32	223	7.77e-70	222
Msa0608400	MtrunA17_Chr1g0198751	56.771	192	78	2	24	215	37	223	4.74e-69	221
Msa0608400	MtrunA17_Chr7g0227071	54.054	185	82	1	24	208	34	215	4.22e-64	209
Msa0608400	MtrunA17_Chr1g0198741	56.637	113	48	1	103	215	7	118	5.21e-34	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608400	AT4G28500.1	78.680	197	41	1	21	217	33	228	1.54e-113	330
Msa0608400	AT1G28470.1	78.462	195	39	2	23	215	50	243	9.66e-108	315
Msa0608400	AT4G29230.3	70.297	202	48	2	24	218	29	225	1.46e-97	293
Msa0608400	AT4G29230.1	70.297	202	48	2	24	218	29	225	6.56e-97	294
Msa0608400	AT4G29230.2	69.802	202	48	2	24	218	29	224	4.72e-96	291
Msa0608400	AT5G56620.3	65.025	203	57	4	26	218	25	223	4.86e-89	271
Msa0608400	AT5G56620.2	65.025	203	57	4	26	218	25	223	5.10e-89	271
Msa0608400	AT5G56620.1	65.025	203	57	4	26	218	25	223	1.09e-88	269
Msa0608400	AT1G25580.1	57.368	190	70	4	24	213	37	215	3.36e-66	213
Msa0608400	AT5G14490.2	50.532	188	88	3	26	213	36	218	1.12e-54	179

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Find 94 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATGAAGGGTCAAAG+TGG	0.604850	4_2:+55480532	Msa0608400:CDS
AAAAGTACATTCGGATCACG+AGG	0.691199	4_2:+55480237	Msa0608400:CDS
AAACAATAATAGCATCACAG+TGG	0.704092	4_2:+55476754	Msa0608400:CDS
AAACTATGAAGGGTCAAAGT+GGG	0.577178	4_2:+55480533	Msa0608400:CDS
AAACTATGGAAAACAAAGAA+AGG	0.529627	4_2:+55480357	Msa0608400:CDS
AAAGGCAGAGAAAACAAATT+GGG	0.493263	4_2:+55480375	Msa0608400:CDS
AAATATTTCAGCAGTGTCAT+AGG	0.430428	4_2:+55481028	Msa0608400:three_prime_UTR
AACATTTGGAAGCAAAGGTG+CGG	0.636725	4_2:+55477256	Msa0608400:CDS
AACTTGGAATTGTTGTAGAC+TGG	0.461374	4_2:-55480301	None:intergenic
AAGAGAAGGGACAGAGAGAA+CGG	0.572639	4_2:-55476594	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACAGAAACTAAAAGAGAA+GGG	-	chr4_2:55476610-55476629	None:intergenic	30.0%
CTCTATAAATGGAATGATTG+AGG	+	chr4_2:55476687-55476706	Msa0608400:five_prime_UTR	30.0%
GAATGATTGAGGAAAAAAAG+AGG	+	chr4_2:55476698-55476717	Msa0608400:five_prime_UTR	30.0%
GAGGAAAAAAAGAGGAAAAA+AGG	+	chr4_2:55476706-55476725	Msa0608400:five_prime_UTR	30.0%
AAACAATAATAGCATCACAG+TGG	+	chr4_2:55476754-55476773	Msa0608400:CDS	30.0%
TTTAATTAAGGACCTGATCT+TGG	-	chr4_2:55476838-55476857	None:intergenic	30.0%
TCAGGTCCTTAATTAAAACT+TGG	+	chr4_2:55476841-55476860	Msa0608400:intron	30.0%
ATGAAAAATAATTAGGGTGG+TGG	+	chr4_2:55477168-55477187	Msa0608400:intron	30.0%
TCAAGAGATTCTTGAACATT+TGG	+	chr4_2:55477242-55477261	Msa0608400:CDS	30.0%
GTATATATTACATACTCCTC+CGG	+	chr4_2:55477376-55477395	Msa0608400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	55476456	55481079	55476456	ID=Msa0608400;Name=Msa0608400
chr4_2	mRNA	55476456	55481079	55476456	ID=Msa0608400-mRNA-1;Parent=Msa0608400;Name=Msa0608400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=275\|1\|1\|1\|1\|1\|3\|374\|284
chr4_2	exon	55476456	55476844	55476456	ID=Msa0608400-mRNA-1:exon:14133;Parent=Msa0608400-mRNA-1
chr4_2	exon	55477183	55477375	55477183	ID=Msa0608400-mRNA-1:exon:14134;Parent=Msa0608400-mRNA-1
chr4_2	exon	55480158	55481079	55480158	ID=Msa0608400-mRNA-1:exon:14135;Parent=Msa0608400-mRNA-1
chr4_2	five_prime_UTR	55476456	55476730	55476456	ID=Msa0608400-mRNA-1:five_prime_utr;Parent=Msa0608400-mRNA-1
chr4_2	CDS	55476731	55476844	55476731	ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2	CDS	55477183	55477375	55477183	ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2	CDS	55480158	55480705	55480158	ID=Msa0608400-mRNA-1:cds;Parent=Msa0608400-mRNA-1
chr4_2	three_prime_UTR	55480706	55481079	55480706	ID=Msa0608400-mRNA-1:three_prime_utr;Parent=Msa0608400-mRNA-1

Gene Sequence

>Msa0608400

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGCGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGGCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGATCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA

Protein sequence

>Msa0608400

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*