Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555380 | XP_003607602.1 | 90.244 | 861 | 15 | 8 | 1 | 793 | 1 | 860 | 0.0 | 1516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555380 | sp|F4IP69|MIP3_ARATH | 57.143 | 854 | 289 | 13 | 1 | 793 | 1 | 838 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555380 | G7JCN0 | 90.244 | 861 | 15 | 8 | 1 | 793 | 1 | 860 | 0.0 | 1516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0450400 | Msa0555380 | -0.800463 | 1.424419e-48 | -8.615850e-47 |
| Msa0555380 | Msa1447180 | 0.807505 | 4.892801e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555380 | MtrunA17_Chr4g0041331 | 90.244 | 861 | 15 | 8 | 1 | 793 | 1 | 860 | 0.0 | 1516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555380 | AT2G42700.1 | 57.143 | 854 | 289 | 13 | 1 | 793 | 1 | 838 | 0.0 | 920 |
| Msa0555380 | AT2G42700.2 | 55.266 | 883 | 289 | 14 | 1 | 793 | 1 | 867 | 0.0 | 905 |
| Msa0555380 | AT2G42700.3 | 56.658 | 796 | 268 | 13 | 59 | 793 | 1 | 780 | 0.0 | 839 |
Find 194 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGAAATTAAAATGTATT+TGG | 0.203633 | 4_1:+53391694 | Msa0555380:three_prime_UTR |
| CTGAACCTTTGCCTAGGATA+TGG | 0.211483 | 4_1:-53389815 | None:intergenic |
| CTTTCATCAACAAGTAAATT+AGG | 0.217569 | 4_1:+53391670 | Msa0555380:three_prime_UTR |
| CTTATAAACCAATCCCTTTC+CGG | 0.228005 | 4_1:-53390999 | None:intergenic |
| CGTGGATTTGGAAGACTTCT+TGG | 0.236769 | 4_1:+53391100 | Msa0555380:CDS |
| CGCATTATTAATCGTGGATT+TGG | 0.244667 | 4_1:+53391088 | Msa0555380:CDS |
| TGCTGATCAAAATGTCATTT+TGG | 0.250911 | 4_1:+53391268 | Msa0555380:CDS |
| GTTTCCAATCTTCTTCATTA+AGG | 0.263575 | 4_1:-53389911 | None:intergenic |
| GAAGAACTAAATAAGAAATC+TGG | 0.286144 | 4_1:+53388670 | Msa0555380:CDS |
| TTGGGATCACACATAAATAA+AGG | 0.293611 | 4_1:+53390476 | Msa0555380:CDS |
| ATAATGTGGCTGACGCTAAT+AGG | 0.296344 | 4_1:-53390319 | None:intergenic |
| ACACATAAATAAAGGGAAAA+AGG | 0.296465 | 4_1:+53390484 | Msa0555380:CDS |
| CGCTTTCAGTTTCCTTCCAC+TGG | 0.300455 | 4_1:+53388754 | Msa0555380:CDS |
| CCAGGGGCATATAGTGACTA+TGG | 0.312910 | 4_1:+53388625 | Msa0555380:CDS |
| GACATAAAATCATGGGAAAA+TGG | 0.317059 | 4_1:-53388885 | None:intergenic |
| CGTTCCTCTTGCCAAGAAAA+TGG | 0.330118 | 4_1:-53390608 | None:intergenic |
| GGATTGAGATTCTGAGAAAA+AGG | 0.330749 | 4_1:-53386375 | None:intergenic |
| CGGAAAGGGATTGGTTTATA+AGG | 0.334422 | 4_1:+53391000 | Msa0555380:CDS |
| GATACTGATGATGTGCCTCC+TGG | 0.335511 | 4_1:+53389030 | Msa0555380:CDS |
| GAAGGAAGAACAAATGCTTT+TGG | 0.335794 | 4_1:-53388916 | None:intergenic |
| CAAAGTCTTGCCGCTCAAAT+TGG | 0.342456 | 4_1:+53390428 | Msa0555380:CDS |
| GCAGATTGGTAGCATGTTAC+AGG | 0.352941 | 4_1:+53388705 | Msa0555380:CDS |
| TAAAGTTGGAGTTGCGTGAT+AGG | 0.353789 | 4_1:+53390864 | Msa0555380:CDS |
| AGGAATCAAATTGCACCAAA+TGG | 0.356474 | 4_1:+53390351 | Msa0555380:CDS |
| AAAGCCCCACGGACCGTTTA+CGG | 0.359431 | 4_1:-53389689 | None:intergenic |
| CTGGGCAAGTACGATGTGCC+TGG | 0.363010 | 4_1:+53391037 | Msa0555380:CDS |
| CGATTCAATCGCGATTTCTT+CGG | 0.365162 | 4_1:+53386342 | Msa0555380:five_prime_UTR |
| AGTGTTTCCTGATTCACCTC+TGG | 0.373070 | 4_1:+53388600 | Msa0555380:CDS |
| CTCTGGTGACTCTGATTCTC+AGG | 0.375186 | 4_1:+53389986 | Msa0555380:CDS |
| TGCACGAGCTGTCTGTAGTT+TGG | 0.382842 | 4_1:+53386761 | Msa0555380:CDS |
| CCTGATTCACCTCTGGGACC+AGG | 0.383410 | 4_1:+53388607 | Msa0555380:CDS |
| TCCTCATTCAGGTGGGTGAT+TGG | 0.384351 | 4_1:+53387438 | Msa0555380:intron |
| GGTGTAGATGGACTTGAAAA+TGG | 0.385329 | 4_1:+53389587 | Msa0555380:intron |
| TTCTCACTCCTTGTTGCCAC+GGG | 0.398541 | 4_1:+53389736 | Msa0555380:CDS |
| CCTGGTCCCAGAGGTGAATC+AGG | 0.400961 | 4_1:-53388607 | None:intergenic |
| ATGACATTGGTCGCCGTAAA+CGG | 0.405152 | 4_1:+53389676 | Msa0555380:CDS |
| GGTTTGCCTCCCTTCAGTAC+TGG | 0.406730 | 4_1:+53388997 | Msa0555380:CDS |
| TGTTCTTCCTTCAGAAGGAT+TGG | 0.410892 | 4_1:+53388927 | Msa0555380:CDS |
| GACATGCTTGATTTACTACT+AGG | 0.412659 | 4_1:+53391626 | Msa0555380:CDS |
| CGATGATCAGTGGGGCAAAT+GGG | 0.417050 | 4_1:+53390784 | Msa0555380:CDS |
| GGAAGTTGTTCTTTCTCTAC+GGG | 0.418925 | 4_1:-53389793 | None:intergenic |
| GGGAAGTTGTTCTTTCTCTA+CGG | 0.420289 | 4_1:-53389794 | None:intergenic |
| TGAACCTTTGCCTAGGATAT+GGG | 0.421724 | 4_1:-53389814 | None:intergenic |
| GTAAATCTAAAGTTTCTAGA+TGG | 0.426555 | 4_1:+53390680 | Msa0555380:intron |
| ACGATGATCAGTGGGGCAAA+TGG | 0.432670 | 4_1:+53390783 | Msa0555380:CDS |
| CTGATTCACCTCTGGGACCA+GGG | 0.437626 | 4_1:+53388608 | Msa0555380:CDS |
| GTGTTTCCTGATTCACCTCT+GGG | 0.442832 | 4_1:+53388601 | Msa0555380:CDS |
| GAACCATAATCACCTGACTA+TGG | 0.444374 | 4_1:-53391123 | None:intergenic |
| AGCACACTTCCTCTACCATT+TGG | 0.445692 | 4_1:+53389065 | Msa0555380:CDS |
| CGAAGAAATCGCGATTGAAT+CGG | 0.447212 | 4_1:-53386341 | None:intergenic |
| CCAACAAGCAACTCTATATC+AGG | 0.448459 | 4_1:-53391578 | None:intergenic |
| CACTTGAACTAGCTTCAAGA+TGG | 0.451553 | 4_1:-53388789 | None:intergenic |
| AAGACTTCTTGGCCATAGTC+AGG | 0.452598 | 4_1:+53391111 | Msa0555380:CDS |
| AATTAAGAGTGGAGTGGAAA+GGG | 0.453367 | 4_1:-53386396 | None:intergenic |
| TTTCCAACAGCTGGTTCTGA+TGG | 0.455704 | 4_1:+53390584 | Msa0555380:CDS |
| AGATCCTTAATGAAGAAGAT+TGG | 0.457569 | 4_1:+53389907 | Msa0555380:CDS |
| TGCCTATGCCGGAAAGGGAT+TGG | 0.459495 | 4_1:+53390991 | Msa0555380:CDS |
| TGCGTTTGCGTTCAAAGGAA+TGG | 0.460180 | 4_1:+53386456 | Msa0555380:exon |
| CATAAATCAGAGTGCTCTGT+TGG | 0.462189 | 4_1:+53390457 | Msa0555380:CDS |
| ATCTTTGCGTTTGCGTTCAA+AGG | 0.462336 | 4_1:+53386451 | Msa0555380:five_prime_UTR |
| GCAAGATTTGATAAGATTGA+CGG | 0.466641 | 4_1:-53386482 | None:intergenic |
| TCTTCCTTCAGAAGGATTGG+TGG | 0.467895 | 4_1:+53388930 | Msa0555380:CDS |
| TGCAGATACAGTGCATGAAT+TGG | 0.473074 | 4_1:+53388849 | Msa0555380:intron |
| CATGAAGATTCCATTACTCC+TGG | 0.473094 | 4_1:+53388976 | Msa0555380:CDS |
| ACTGCTAAATGCATCCCATT+TGG | 0.473230 | 4_1:-53390366 | None:intergenic |
| AACAAAACGTGGGGCCGTAC+TGG | 0.473790 | 4_1:+53390145 | Msa0555380:CDS |
| AGAGGAAGCTACCGAAGAGC+TGG | 0.474067 | 4_1:+53390745 | Msa0555380:CDS |
| ATACTGATGATGTGCCTCCT+GGG | 0.474422 | 4_1:+53389031 | Msa0555380:CDS |
| GCAATTGTTTATTTAGATGC+CGG | 0.476167 | 4_1:+53386684 | Msa0555380:CDS |
| GCACCGAGTTCAAGAAGAAC+AGG | 0.477838 | 4_1:-53386741 | None:intergenic |
| ATCATCAATCTCCAGCTCTT+CGG | 0.478313 | 4_1:-53390756 | None:intergenic |
| TCAGGAAGCCAACTCAAACT+TGG | 0.478797 | 4_1:+53389834 | Msa0555380:intron |
| TGGGATCACACATAAATAAA+GGG | 0.479287 | 4_1:+53390477 | Msa0555380:CDS |
| TGAAATGGGACATAAAATCA+TGG | 0.480305 | 4_1:-53388893 | None:intergenic |
| TAAGGTATTAGCAAGGGTGC+TGG | 0.480645 | 4_1:+53391018 | Msa0555380:CDS |
| CTTCTCACTCCTTGTTGCCA+CGG | 0.481695 | 4_1:+53389735 | Msa0555380:CDS |
| CAGATTTCGGAAGACATTGA+AGG | 0.484496 | 4_1:+53386660 | Msa0555380:intron |
| TTGAGCGGCAAGACTTTGAC+TGG | 0.487236 | 4_1:-53390423 | None:intergenic |
| TGGTCGCCGTAAACGGTCCG+TGG | 0.488218 | 4_1:+53389683 | Msa0555380:CDS |
| TCTAGTATAGCTTCCAAGAA+TGG | 0.489081 | 4_1:-53390116 | None:intergenic |
| GGAATCAAATTGCACCAAAT+GGG | 0.494429 | 4_1:+53390352 | Msa0555380:CDS |
| AGAGATCAAGCCAGTACTGA+AGG | 0.496828 | 4_1:-53389007 | None:intergenic |
| AAGAACTAAATAAGAAATCT+GGG | 0.501312 | 4_1:+53388671 | Msa0555380:CDS |
| AGAACAACTTCCCATATCCT+AGG | 0.504193 | 4_1:+53389804 | Msa0555380:CDS |
| CTAGGTGCGTCAAGCAAGGC+AGG | 0.505115 | 4_1:+53391535 | Msa0555380:intron |
| TCAGTTTCCTTCCACTGGAG+AGG | 0.505647 | 4_1:+53388759 | Msa0555380:CDS |
| TGGTGACATGCAACTAAAGT+TGG | 0.506816 | 4_1:+53390850 | Msa0555380:CDS |
| AGTAAATCAAGCATGTCATC+AGG | 0.508792 | 4_1:-53391620 | None:intergenic |
| CATCTAAAGGAGCACGTTGA+AGG | 0.509730 | 4_1:-53389866 | None:intergenic |
| GGGGCAAAGCAGAAAATATA+CGG | 0.511182 | 4_1:-53389773 | None:intergenic |
| CCTGATATAGAGTTGCTTGT+TGG | 0.511217 | 4_1:+53391578 | Msa0555380:CDS |
| GTACTGAAGGGAGGCAAACC+AGG | 0.512676 | 4_1:-53388994 | None:intergenic |
| GAAGATGCCTATGCCGGAAA+GGG | 0.513122 | 4_1:+53390986 | Msa0555380:CDS |
| TGGTGCAATTTGATTCCTCA+AGG | 0.515075 | 4_1:-53390346 | None:intergenic |
| GGAATTGGATACCTGTGTAA+TGG | 0.516253 | 4_1:-53386512 | None:intergenic |
| GGCTACAAGAAGCTATGCGC+AGG | 0.518100 | 4_1:+53390177 | Msa0555380:CDS |
| GGGCCGTACTGGTAAAGAAA+TGG | 0.518510 | 4_1:+53390156 | Msa0555380:CDS |
| ATCAGAGGAGACAAAAGATC+CGG | 0.519107 | 4_1:-53390078 | None:intergenic |
| ATAAATCAGAGTGCTCTGTT+GGG | 0.520222 | 4_1:+53390458 | Msa0555380:CDS |
| GGCAAATGGGGTGATGAAGA+TGG | 0.520992 | 4_1:+53390797 | Msa0555380:CDS |
| AAAACTCTGAGCGTAAGCTC+TGG | 0.521670 | 4_1:+53390395 | Msa0555380:CDS |
| TAGCCATTTCTTTACCAGTA+CGG | 0.522419 | 4_1:-53390159 | None:intergenic |
| GATATAGAGTTGCTTGTTGG+TGG | 0.522960 | 4_1:+53391581 | Msa0555380:CDS |
| TTGTTACCTTGGCTGCCAAA+TGG | 0.524385 | 4_1:-53389080 | None:intergenic |
| TTTGATGAAGATGCCTATGC+CGG | 0.524421 | 4_1:+53390980 | Msa0555380:CDS |
| GGGACTGTTGTCTGACCGAC+CGG | 0.524562 | 4_1:+53386290 | Msa0555380:five_prime_UTR |
| GAATATCATTCTTCCACTGT+GGG | 0.526024 | 4_1:+53391064 | Msa0555380:CDS |
| GCATTTGTTCTTCCTTCAGA+AGG | 0.527054 | 4_1:+53388922 | Msa0555380:CDS |
| GAACAACTTGATGTGTCGTC+AGG | 0.527611 | 4_1:-53387544 | None:intergenic |
| CCTTGGCTGCCAAATGGTAG+AGG | 0.529969 | 4_1:-53389074 | None:intergenic |
| GGTCGCCGTAAACGGTCCGT+GGG | 0.530564 | 4_1:+53389684 | Msa0555380:CDS |
| GGGAGGCAAACCAGGAGTAA+TGG | 0.532034 | 4_1:-53388986 | None:intergenic |
| CCTCTACCATTTGGCAGCCA+AGG | 0.532676 | 4_1:+53389074 | Msa0555380:CDS |
| AGTGGTATCTGAACATCTAA+AGG | 0.532875 | 4_1:-53389879 | None:intergenic |
| GTCAATGAACCATCCCTCAA+TGG | 0.534394 | 4_1:-53390944 | None:intergenic |
| AACCAATCCCTTTCCGGCAT+AGG | 0.534419 | 4_1:-53390993 | None:intergenic |
| TGGTTTATAAGGTATTAGCA+AGG | 0.534687 | 4_1:+53391011 | Msa0555380:CDS |
| GGCCCATCAGAACCAGCTGT+TGG | 0.537118 | 4_1:-53390587 | None:intergenic |
| AAGAAGAACCAAGTTTGAGT+TGG | 0.539180 | 4_1:-53389842 | None:intergenic |
| TGATTCACCTCTGGGACCAG+GGG | 0.541778 | 4_1:+53388609 | Msa0555380:CDS |
| TTCCAACAGCTGGTTCTGAT+GGG | 0.542245 | 4_1:+53390585 | Msa0555380:CDS |
| ACATGCTTGATTTACTACTA+GGG | 0.546430 | 4_1:+53391627 | Msa0555380:CDS |
| GAATTAAGAGTGGAGTGGAA+AGG | 0.547737 | 4_1:-53386397 | None:intergenic |
| AAGAAAGAATCTACCATTGA+GGG | 0.548080 | 4_1:+53390931 | Msa0555380:CDS |
| GATGGTTCATTGACCGTGGA+AGG | 0.550211 | 4_1:+53390953 | Msa0555380:CDS |
| GCGTCAAGCAAGGCAGGCAT+TGG | 0.553242 | 4_1:+53391541 | Msa0555380:CDS |
| AAAGAAAGAATCTACCATTG+AGG | 0.556399 | 4_1:+53390930 | Msa0555380:CDS |
| TTGAAAACTCTCAGTAACTC+CGG | 0.562360 | 4_1:-53386703 | None:intergenic |
| AAAGTTGGAGTTGCGTGATA+GGG | 0.562949 | 4_1:+53390865 | Msa0555380:CDS |
| TATCCTGTTCTTCTTGAACT+CGG | 0.563548 | 4_1:+53386738 | Msa0555380:CDS |
| AAGGTATTAGCAAGGGTGCT+GGG | 0.563585 | 4_1:+53391019 | Msa0555380:CDS |
| GGCTTCCTGAACCTTTGCCT+AGG | 0.564393 | 4_1:-53389821 | None:intergenic |
| GAAATGGGACATAAAATCAT+GGG | 0.565299 | 4_1:-53388892 | None:intergenic |
| ACTTGAACTAGCTTCAAGAT+GGG | 0.565356 | 4_1:-53388788 | None:intergenic |
| TGAAGATGCCTATGCCGGAA+AGG | 0.565857 | 4_1:+53390985 | Msa0555380:CDS |
| TATGACAAGCCAAGTCACTC+TGG | 0.575508 | 4_1:+53390041 | Msa0555380:CDS |
| TTACCTAGGTGCGTCAAGCA+AGG | 0.577279 | 4_1:+53391531 | Msa0555380:intron |
| TTCATCAAAACTGCCTTCCA+CGG | 0.577302 | 4_1:-53390966 | None:intergenic |
| TTCCTCAAGGGCTGATAATG+TGG | 0.577356 | 4_1:-53390333 | None:intergenic |
| ATATCTACACCAGAGTGACT+TGG | 0.578057 | 4_1:-53390050 | None:intergenic |
| AAACTTAACTTTGAAGATGG+AGG | 0.578268 | 4_1:+53388730 | Msa0555380:CDS |
| GGTTTATAAGGTATTAGCAA+GGG | 0.587394 | 4_1:+53391012 | Msa0555380:CDS |
| CCATAGTCACTATATGCCCC+TGG | 0.588789 | 4_1:-53388625 | None:intergenic |
| TATGAGATCGCCAATTTGAG+CGG | 0.593438 | 4_1:-53390438 | None:intergenic |
| GTGGGGCGCATTATTAATCG+TGG | 0.594146 | 4_1:+53391082 | Msa0555380:CDS |
| CAGGGGCATATAGTGACTAT+GGG | 0.597809 | 4_1:+53388626 | Msa0555380:CDS |
| TCAGCCACCAATCCTTCTGA+AGG | 0.598661 | 4_1:-53388934 | None:intergenic |
| ATTAATAATGCGCCCCACAG+TGG | 0.599402 | 4_1:-53391077 | None:intergenic |
| GGTGCAATTTGATTCCTCAA+GGG | 0.602849 | 4_1:-53390345 | None:intergenic |
| ATGTCAAGTCTTTATGACAT+TGG | 0.604106 | 4_1:+53389663 | Msa0555380:CDS |
| TCATCTTTGCTAAGGAACAA+AGG | 0.604133 | 4_1:+53390290 | Msa0555380:intron |
| GGAACATCCTCTCCAGTGGA+AGG | 0.605068 | 4_1:-53388766 | None:intergenic |
| AGTGAGTCCCCGTGGCAACA+AGG | 0.608714 | 4_1:-53389744 | None:intergenic |
| GATGATCAGTGGGGCAAATG+GGG | 0.608922 | 4_1:+53390785 | Msa0555380:CDS |
| GAGATCAAGCCAGTACTGAA+GGG | 0.611745 | 4_1:-53389006 | None:intergenic |
| TGATCGTGCGAGAAAACTTG+TGG | 0.613808 | 4_1:+53387472 | Msa0555380:CDS |
| TATAAGCAAGTCAAAATCAG+AGG | 0.615675 | 4_1:+53390727 | Msa0555380:CDS |
| TGGGCAAGTACGATGTGCCT+GGG | 0.621646 | 4_1:+53391038 | Msa0555380:CDS |
| TCATTAAGGATCTTTGCAAG+TGG | 0.626108 | 4_1:-53389897 | None:intergenic |
| ACTTCCCATATCCTAGGCAA+AGG | 0.627491 | 4_1:+53389810 | Msa0555380:CDS |
| ATGGGGTGATGAAGATGGTG+AGG | 0.632251 | 4_1:+53390802 | Msa0555380:CDS |
| CATGCTTGATTTACTACTAG+GGG | 0.635447 | 4_1:+53391628 | Msa0555380:CDS |
| GAAGAATGATATTCTAACCC+AGG | 0.636433 | 4_1:-53391055 | None:intergenic |
| AGCCACATTATCAGCCCTTG+AGG | 0.636835 | 4_1:+53390331 | Msa0555380:CDS |
| ATGGGGAACATCCTCTCCAG+TGG | 0.637292 | 4_1:-53388770 | None:intergenic |
| CTATATGCCCCTGGTCCCAG+AGG | 0.638859 | 4_1:-53388616 | None:intergenic |
| AAACATGACTGCACTTGATG+TGG | 0.641173 | 4_1:+53386785 | Msa0555380:CDS |
| GTCTACTAAGTGACGCACAT+CGG | 0.641931 | 4_1:+53387507 | Msa0555380:CDS |
| AAGAATCTACCATTGAGGGA+TGG | 0.643126 | 4_1:+53390935 | Msa0555380:CDS |
| AGAATATCATTCTTCCACTG+TGG | 0.644306 | 4_1:+53391063 | Msa0555380:CDS |
| GAGGGATGGTTCATTGACCG+TGG | 0.645678 | 4_1:+53390949 | Msa0555380:CDS |
| TTCAAGAAGAGCATCAACAA+CGG | 0.650232 | 4_1:-53390645 | None:intergenic |
| TACTGATGATGTGCCTCCTG+GGG | 0.650501 | 4_1:+53389032 | Msa0555380:CDS |
| ATCAAGCCAGTACTGAAGGG+AGG | 0.651819 | 4_1:-53389003 | None:intergenic |
| GCTACAAGAAGCTATGCGCA+GGG | 0.655269 | 4_1:+53390178 | Msa0555380:CDS |
| TGTGCTGTAAGAGTTGCCCC+AGG | 0.661767 | 4_1:-53389048 | None:intergenic |
| ATCAATGAGTAAAAGCCCCA+CGG | 0.663204 | 4_1:-53389700 | None:intergenic |
| CTTGAACTAGCTTCAAGATG+GGG | 0.668032 | 4_1:-53388787 | None:intergenic |
| TCTCACTCCTTGTTGCCACG+GGG | 0.671305 | 4_1:+53389737 | Msa0555380:CDS |
| TCTGGTGTAGATATACTCAC+CGG | 0.673357 | 4_1:+53390059 | Msa0555380:CDS |
| CACGCCATGAAAATTATCAG+AGG | 0.674314 | 4_1:-53390093 | None:intergenic |
| TTGCATCGACTCCATTACAC+AGG | 0.676460 | 4_1:+53386501 | Msa0555380:CDS |
| AACATGCTACCAATCTGCCT+AGG | 0.679821 | 4_1:-53388700 | None:intergenic |
| TAGATGAAGAAACAAAACGT+GGG | 0.686519 | 4_1:+53390135 | Msa0555380:CDS |
| AATATCATTCTTCCACTGTG+GGG | 0.691146 | 4_1:+53391065 | Msa0555380:CDS |
| CTAGATGAAGAAACAAAACG+TGG | 0.694140 | 4_1:+53390134 | Msa0555380:CDS |
| AGATGAAGAAACAAAACGTG+GGG | 0.696959 | 4_1:+53390136 | Msa0555380:CDS |
| GTCGCCGTAAACGGTCCGTG+GGG | 0.705827 | 4_1:+53389685 | Msa0555380:CDS |
| AGGCAGGCATTGGTTGACAG+CGG | 0.705952 | 4_1:+53391551 | Msa0555380:CDS |
| GCTGTAAGAGTTGCCCCAGG+AGG | 0.710733 | 4_1:-53389045 | None:intergenic |
| TATATTCACATCTATCTCCG+AGG | 0.712252 | 4_1:+53387577 | Msa0555380:CDS |
| CGACCGGAGAGAAAAGACGA+AGG | 0.723740 | 4_1:+53386306 | Msa0555380:five_prime_UTR |
| GAAGTTGTTCTTTCTCTACG+GGG | 0.731214 | 4_1:-53389792 | None:intergenic |
| GGTCAATAAGTGAGTCCCCG+TGG | 0.734714 | 4_1:-53389752 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAATTAATTAAATTGAA+AGG | - | chr4_1:53386629-53386648 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATTATGAAGTA+AGG | - | chr4_1:53387815-53387834 | None:intergenic | 10.0% |
| !!! | CTATAGTTATTTTAAAAAAA+TGG | + | chr4_1:53388215-53388234 | Msa0555380:intron | 10.0% |
| !!! | ATTTTAAAAAAATGGTTTAA+TGG | + | chr4_1:53388223-53388242 | Msa0555380:intron | 10.0% |
| !!! | TATTATTTTTTTCCAAAAAA+AGG | - | chr4_1:53389309-53389328 | None:intergenic | 10.0% |
| !!! | TAATCTTCTATTTTGTTTTA+AGG | + | chr4_1:53386562-53386581 | Msa0555380:intron | 15.0% |
| !!! | AAATTAATTTTACAAAAGGA+TGG | - | chr4_1:53387245-53387264 | None:intergenic | 15.0% |
| !! | CTTTATAATCAATTTAGTAT+TGG | + | chr4_1:53387906-53387925 | Msa0555380:intron | 15.0% |
| !! | TAATGAACTAATAGTATTAA+TGG | + | chr4_1:53388170-53388189 | Msa0555380:intron | 15.0% |
| !! | TTTGTCAAAGAAAATTATAA+GGG | + | chr4_1:53388437-53388456 | Msa0555380:intron | 15.0% |
| !! | TTAAAAAAAGATAAATACGA+AGG | - | chr4_1:53388539-53388558 | None:intergenic | 15.0% |
| !!! | CGTATTTATCTTTTTTTAAT+TGG | + | chr4_1:53388540-53388559 | Msa0555380:intron | 15.0% |
| !! | AATAAAAATGAACAAGTATA+TGG | + | chr4_1:53390830-53390849 | Msa0555380:CDS | 15.0% |
| !! | GTTAGAAATTAAAATGTATT+TGG | + | chr4_1:53391694-53391713 | Msa0555380:three_prime_UTR | 15.0% |
| !!! | CTTTTTTTTATCTCTTTTCT+TGG | + | chr4_1:53387633-53387652 | Msa0555380:intron | 20.0% |
| !!! | TTTTCTTGGCTATATATTTT+TGG | + | chr4_1:53387647-53387666 | Msa0555380:intron | 20.0% |
| !!! | TTTCTTGGCTATATATTTTT+GGG | + | chr4_1:53387648-53387667 | Msa0555380:intron | 20.0% |
| !!! | TTTTTTGGCATAATTTGATA+TGG | + | chr4_1:53387833-53387852 | Msa0555380:intron | 20.0% |
| !!! | TTTTTTTCTTTCTAAGAATG+AGG | + | chr4_1:53387879-53387898 | Msa0555380:intron | 20.0% |
| !!! | TATCTCTGATTTTATGTTAA+AGG | - | chr4_1:53387965-53387984 | None:intergenic | 20.0% |
| !! | TACTATTAGTTCATTATTAC+TGG | - | chr4_1:53388166-53388185 | None:intergenic | 20.0% |
| !! | TTAAAAAAATGGTTTAATGG+TGG | + | chr4_1:53388226-53388245 | Msa0555380:intron | 20.0% |
| !!! | CTTATGACCAATATAATTTT+AGG | - | chr4_1:53388392-53388411 | None:intergenic | 20.0% |
| !! | GTTTGTCAAAGAAAATTATA+AGG | + | chr4_1:53388436-53388455 | Msa0555380:intron | 20.0% |
| !! | AAGAACTAAATAAGAAATCT+GGG | + | chr4_1:53388671-53388690 | Msa0555380:CDS | 20.0% |
| !! | TTCTATTAAATAGTTCGAAT+AGG | - | chr4_1:53389395-53389414 | None:intergenic | 20.0% |
| !! | AACTATTTAATAGAACATGA+CGG | + | chr4_1:53389400-53389419 | Msa0555380:intron | 20.0% |
| !!! | AATGATCATTGGATATATTT+TGG | + | chr4_1:53390550-53390569 | Msa0555380:intron | 20.0% |
| !!! | TTTTCATTTACAGTCAAAAT+TGG | + | chr4_1:53391840-53391859 | Msa0555380:three_prime_UTR | 20.0% |
| !!! | TTTTTTTCCCAATAGGAAAA+CGG | + | chr4_1:53386269-53386288 | Msa0555380:five_prime_UTR | 25.0% |
| !! | TAATGCTTTTGAATTAAGAG+TGG | - | chr4_1:53386410-53386429 | None:intergenic | 25.0% |
| ! | ATTGAGTTATAACTGTTTGT+AGG | - | chr4_1:53386543-53386562 | None:intergenic | 25.0% |
| ! | GTCATATTCATTAATTGATG+TGG | - | chr4_1:53387040-53387059 | None:intergenic | 25.0% |
| !! | AATTTTACAAAAGGATGGAA+AGG | - | chr4_1:53387240-53387259 | None:intergenic | 25.0% |
| !! | TTTTGTTCAATGTTAGACTA+CGG | + | chr4_1:53387371-53387390 | Msa0555380:intron | 25.0% |
| ! | TTATTAATTGTTCCTCATTC+AGG | + | chr4_1:53387427-53387446 | Msa0555380:intron | 25.0% |
| ! | GCTATATTTATATTTGATGC+TGG | + | chr4_1:53387684-53387703 | Msa0555380:intron | 25.0% |
| !! | ATGATAATGAACAAACCATA+TGG | - | chr4_1:53388102-53388121 | None:intergenic | 25.0% |
| ! | TATTAGTTCATTATTACTGG+CGG | - | chr4_1:53388163-53388182 | None:intergenic | 25.0% |
| ! | CTGTTCTCCTAAAATTATAT+TGG | + | chr4_1:53388382-53388401 | Msa0555380:intron | 25.0% |
| !! | AATTCTAGTTAAAATGCAGA+TGG | + | chr4_1:53388570-53388589 | Msa0555380:intron | 25.0% |
| ! | GAAGAACTAAATAAGAAATC+TGG | + | chr4_1:53388670-53388689 | Msa0555380:CDS | 25.0% |
| !! | GAAAAACTTAACTTTGAAGA+TGG | + | chr4_1:53388727-53388746 | Msa0555380:CDS | 25.0% |
| ! | GAAACAAACAACAAACAAAA+AGG | - | chr4_1:53389519-53389538 | None:intergenic | 25.0% |
| ! | GGTATCAAATTAGTAATTAG+AGG | - | chr4_1:53389543-53389562 | None:intergenic | 25.0% |
| !!! | ACCATTTCTTCTTTTGTTTA+TGG | + | chr4_1:53389566-53389585 | Msa0555380:intron | 25.0% |
| ! | ACCATAAACAAAAGAAGAAA+TGG | - | chr4_1:53389570-53389589 | None:intergenic | 25.0% |
| !! | ATTGGAAACTAGACAATTTT+CGG | + | chr4_1:53389925-53389944 | Msa0555380:CDS | 25.0% |
| ! | ACACATAAATAAAGGGAAAA+AGG | + | chr4_1:53390484-53390503 | Msa0555380:CDS | 25.0% |
| !! | GTAAATCTAAAGTTTCTAGA+TGG | + | chr4_1:53390680-53390699 | Msa0555380:intron | 25.0% |
| ! | TTAGAAAATATTAGCCAAGT+TGG | - | chr4_1:53391400-53391419 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTCTTTACCT+AGG | + | chr4_1:53391517-53391536 | Msa0555380:intron | 25.0% |
| ! | CTTTCATCAACAAGTAAATT+AGG | + | chr4_1:53391670-53391689 | Msa0555380:three_prime_UTR | 25.0% |
| !!! | CAACTCATTTTTTTCCCAAT+AGG | + | chr4_1:53386262-53386281 | Msa0555380:five_prime_UTR | 30.0% |
| !!! | TTTTTTCCCAATAGGAAAAC+GGG | + | chr4_1:53386270-53386289 | Msa0555380:five_prime_UTR | 30.0% |
| ! | GATTCTGAGAAAAAGGAATT+GGG | - | chr4_1:53386371-53386390 | None:intergenic | 30.0% |
| ! | AGATTCTGAGAAAAAGGAAT+TGG | - | chr4_1:53386372-53386391 | None:intergenic | 30.0% |
| GCAAGATTTGATAAGATTGA+CGG | - | chr4_1:53386485-53386504 | None:intergenic | 30.0% | |
| TATAACTGTTTGTAGGAACT+AGG | - | chr4_1:53386536-53386555 | None:intergenic | 30.0% | |
| TCTCTGAATTGTTCAGATTT+CGG | + | chr4_1:53386647-53386666 | Msa0555380:intron | 30.0% | |
| GCAATTGTTTATTTAGATGC+CGG | + | chr4_1:53386684-53386703 | Msa0555380:CDS | 30.0% | |
| CATAATGCAACTGATATTGA+AGG | + | chr4_1:53386912-53386931 | Msa0555380:intron | 30.0% | |
| AAAAGAAGAGATAAACTAGC+AGG | - | chr4_1:53387618-53387637 | None:intergenic | 30.0% | |
| TTTGATACTAGAGTTGCATT+GGG | - | chr4_1:53387942-53387961 | None:intergenic | 30.0% | |
| ! | ATTAACTTGGCATATACGAT+GGG | + | chr4_1:53388003-53388022 | Msa0555380:intron | 30.0% |
| AGATCTTAGTAATATGTGAC+TGG | + | chr4_1:53388124-53388143 | Msa0555380:intron | 30.0% | |
| AAAAAATGGTTTAATGGTGG+TGG | + | chr4_1:53388229-53388248 | Msa0555380:intron | 30.0% | |
| ACTTTGTACATAAATGTCTC+AGG | + | chr4_1:53388296-53388315 | Msa0555380:intron | 30.0% | |
| ! | AAACTTAACTTTGAAGATGG+AGG | + | chr4_1:53388730-53388749 | Msa0555380:CDS | 30.0% |
| GACATAAAATCATGGGAAAA+TGG | - | chr4_1:53388888-53388907 | None:intergenic | 30.0% | |
| GAAATGGGACATAAAATCAT+GGG | - | chr4_1:53388895-53388914 | None:intergenic | 30.0% | |
| TGAAATGGGACATAAAATCA+TGG | - | chr4_1:53388896-53388915 | None:intergenic | 30.0% | |
| ! | ACAAATGCTTTTGGTGAAAT+GGG | - | chr4_1:53388910-53388929 | None:intergenic | 30.0% |
| ! | AACAAATGCTTTTGGTGAAA+TGG | - | chr4_1:53388911-53388930 | None:intergenic | 30.0% |
| ACGATGTACAAAGTTAAAAC+AGG | - | chr4_1:53389225-53389244 | None:intergenic | 30.0% | |
| AGATCAAGGACTATTTCAAT+CGG | - | chr4_1:53389366-53389385 | None:intergenic | 30.0% | |
| ATTAAGTGAGGTTAGATACA+TGG | - | chr4_1:53389437-53389456 | None:intergenic | 30.0% | |
| ATGTATCTAACCTCACTTAA+TGG | + | chr4_1:53389436-53389455 | Msa0555380:intron | 30.0% | |
| TGTATCTAACCTCACTTAAT+GGG | + | chr4_1:53389437-53389456 | Msa0555380:intron | 30.0% | |
| !! | TCTTTTGTTTATGGTGTAGA+TGG | + | chr4_1:53389575-53389594 | Msa0555380:intron | 30.0% |
| ! | AAAATGGAAATTTTCTCCCT+TGG | + | chr4_1:53389603-53389622 | Msa0555380:CDS | 30.0% |
| ! | AGTTTTTGACATATCACCAA+GGG | - | chr4_1:53389622-53389641 | None:intergenic | 30.0% |
| ATGTCAAGTCTTTATGACAT+TGG | + | chr4_1:53389663-53389682 | Msa0555380:CDS | 30.0% | |
| AGATCCTTAATGAAGAAGAT+TGG | + | chr4_1:53389907-53389926 | Msa0555380:CDS | 30.0% | |
| GTTTCCAATCTTCTTCATTA+AGG | - | chr4_1:53389914-53389933 | None:intergenic | 30.0% | |
| !!! | AGTGTTGAAGCTTTTTTATG+CGG | + | chr4_1:53389957-53389976 | Msa0555380:CDS | 30.0% |
| TAGATGAAGAAACAAAACGT+GGG | + | chr4_1:53390135-53390154 | Msa0555380:CDS | 30.0% | |
| TTGGGATCACACATAAATAA+AGG | + | chr4_1:53390476-53390495 | Msa0555380:CDS | 30.0% | |
| TGGGATCACACATAAATAAA+GGG | + | chr4_1:53390477-53390496 | Msa0555380:CDS | 30.0% | |
| !!! | ATCATTGGATATATTTTGGC+AGG | + | chr4_1:53390554-53390573 | Msa0555380:intron | 30.0% |
| TATAAGCAAGTCAAAATCAG+AGG | + | chr4_1:53390727-53390746 | Msa0555380:CDS | 30.0% | |
| AAAGAAAGAATCTACCATTG+AGG | + | chr4_1:53390930-53390949 | Msa0555380:CDS | 30.0% | |
| AAGAAAGAATCTACCATTGA+GGG | + | chr4_1:53390931-53390950 | Msa0555380:CDS | 30.0% | |
| ! | TGGTTTATAAGGTATTAGCA+AGG | + | chr4_1:53391011-53391030 | Msa0555380:CDS | 30.0% |
| ! | GGTTTATAAGGTATTAGCAA+GGG | + | chr4_1:53391012-53391031 | Msa0555380:CDS | 30.0% |
| TAGACAGTAAGGATAGAAAA+GGG | - | chr4_1:53391220-53391239 | None:intergenic | 30.0% | |
| ATAGACAGTAAGGATAGAAA+AGG | - | chr4_1:53391221-53391240 | None:intergenic | 30.0% | |
| !! | TGCTGATCAAAATGTCATTT+TGG | + | chr4_1:53391268-53391287 | Msa0555380:CDS | 30.0% |
| ACATGCTTGATTTACTACTA+GGG | + | chr4_1:53391627-53391646 | Msa0555380:CDS | 30.0% | |
| ! | GGATTGAGATTCTGAGAAAA+AGG | - | chr4_1:53386378-53386397 | None:intergenic | 35.0% |
| AATTAAGAGTGGAGTGGAAA+GGG | - | chr4_1:53386399-53386418 | None:intergenic | 35.0% | |
| ! | CTTTTGAATTAAGAGTGGAG+TGG | - | chr4_1:53386405-53386424 | None:intergenic | 35.0% |
| TGTTTGTAGGAACTAGGAAT+TGG | - | chr4_1:53386530-53386549 | None:intergenic | 35.0% | |
| TTGAAAACTCTCAGTAACTC+CGG | - | chr4_1:53386706-53386725 | None:intergenic | 35.0% | |
| TATCCTGTTCTTCTTGAACT+CGG | + | chr4_1:53386738-53386757 | Msa0555380:CDS | 35.0% | |
| TCAGATTTCTGCGTTTACAA+AGG | + | chr4_1:53387342-53387361 | Msa0555380:intron | 35.0% | |
| TTAATTGTTCCTCATTCAGG+TGG | + | chr4_1:53387430-53387449 | Msa0555380:intron | 35.0% | |
| TAATTGTTCCTCATTCAGGT+GGG | + | chr4_1:53387431-53387450 | Msa0555380:intron | 35.0% | |
| TATATTCACATCTATCTCCG+AGG | + | chr4_1:53387577-53387596 | Msa0555380:CDS | 35.0% | |
| CACGACACATTAAAATCAAG+AGG | - | chr4_1:53387741-53387760 | None:intergenic | 35.0% | |
| !! | CTCTTGATTTTAATGTGTCG+TGG | + | chr4_1:53387739-53387758 | Msa0555380:intron | 35.0% |
| GTTTGATACTAGAGTTGCAT+TGG | - | chr4_1:53387943-53387962 | None:intergenic | 35.0% | |
| AGAGTGTAGCATCATTAACT+TGG | + | chr4_1:53387990-53388009 | Msa0555380:intron | 35.0% | |
| ! | CATTAACTTGGCATATACGA+TGG | + | chr4_1:53388002-53388021 | Msa0555380:intron | 35.0% |
| ! | TTAACTTGGCATATACGATG+GGG | + | chr4_1:53388004-53388023 | Msa0555380:intron | 35.0% |
| CTTCTTTGTCTGTCTGTTAA+TGG | + | chr4_1:53388028-53388047 | Msa0555380:intron | 35.0% | |
| TGAACAAACCATATGGACAA+TGG | - | chr4_1:53388095-53388114 | None:intergenic | 35.0% | |
| CTTAGTAATATGTGACTGGT+TGG | + | chr4_1:53388128-53388147 | Msa0555380:intron | 35.0% | |
| TAGCTGTTGTGGAATAGTTT+GGG | + | chr4_1:53388262-53388281 | Msa0555380:intron | 35.0% | |
| ! | AGCTGATAGGAAAAAAGTGT+TGG | - | chr4_1:53388514-53388533 | None:intergenic | 35.0% |
| AAATACGAAGGTAAGCTGAT+AGG | - | chr4_1:53388527-53388546 | None:intergenic | 35.0% | |
| AGAAATCTGGGAAAAAACCT+AGG | + | chr4_1:53388683-53388702 | Msa0555380:CDS | 35.0% | |
| ! | ACTTGAACTAGCTTCAAGAT+GGG | - | chr4_1:53388791-53388810 | None:intergenic | 35.0% |
| GTATCTGCAATAAGGTCTAA+TGG | - | chr4_1:53388838-53388857 | None:intergenic | 35.0% | |
| ! | GAAGGAAGAACAAATGCTTT+TGG | - | chr4_1:53388919-53388938 | None:intergenic | 35.0% |
| ! | ATGCATGTCATTTGTTACCT+TGG | - | chr4_1:53389094-53389113 | None:intergenic | 35.0% |
| CGAATAGGAAATGTAGATCA+AGG | - | chr4_1:53389380-53389399 | None:intergenic | 35.0% | |
| GTATCTAACCTCACTTAATG+GGG | + | chr4_1:53389438-53389457 | Msa0555380:intron | 35.0% | |
| !! | CAAAAAGGTACTCTAACTGA+TGG | - | chr4_1:53389504-53389523 | None:intergenic | 35.0% |
| AACAAAAGAAGAAATGGTCG+AGG | - | chr4_1:53389564-53389583 | None:intergenic | 35.0% | |
| ! | CAGTTTTTGACATATCACCA+AGG | - | chr4_1:53389623-53389642 | None:intergenic | 35.0% |
| GGTGATATGTCAAAAACTGT+TGG | + | chr4_1:53389624-53389643 | Msa0555380:CDS | 35.0% | |
| AAGAAGAACCAAGTTTGAGT+TGG | - | chr4_1:53389845-53389864 | None:intergenic | 35.0% | |
| AGTGGTATCTGAACATCTAA+AGG | - | chr4_1:53389882-53389901 | None:intergenic | 35.0% | |
| TCATTAAGGATCTTTGCAAG+TGG | - | chr4_1:53389900-53389919 | None:intergenic | 35.0% | |
| !!! | GTGTTGAAGCTTTTTTATGC+GGG | + | chr4_1:53389958-53389977 | Msa0555380:CDS | 35.0% |
| ! | GTCTCCTCTGATAATTTTCA+TGG | + | chr4_1:53390089-53390108 | Msa0555380:CDS | 35.0% |
| TCTAGTATAGCTTCCAAGAA+TGG | - | chr4_1:53390119-53390138 | None:intergenic | 35.0% | |
| CTAGATGAAGAAACAAAACG+TGG | + | chr4_1:53390134-53390153 | Msa0555380:CDS | 35.0% | |
| AGATGAAGAAACAAAACGTG+GGG | + | chr4_1:53390136-53390155 | Msa0555380:CDS | 35.0% | |
| TAGCCATTTCTTTACCAGTA+CGG | - | chr4_1:53390162-53390181 | None:intergenic | 35.0% | |
| TGTTCCTTAGCAAAGATGAT+TGG | - | chr4_1:53390289-53390308 | None:intergenic | 35.0% | |
| TCATCTTTGCTAAGGAACAA+AGG | + | chr4_1:53390290-53390309 | Msa0555380:intron | 35.0% | |
| AGGAATCAAATTGCACCAAA+TGG | + | chr4_1:53390351-53390370 | Msa0555380:CDS | 35.0% | |
| GGAATCAAATTGCACCAAAT+GGG | + | chr4_1:53390352-53390371 | Msa0555380:CDS | 35.0% | |
| ! | ATAAATCAGAGTGCTCTGTT+GGG | + | chr4_1:53390458-53390477 | Msa0555380:CDS | 35.0% |
| !! | GCTTTGCTGTTAATGATCAT+TGG | + | chr4_1:53390539-53390558 | Msa0555380:intron | 35.0% |
| !! | TTCAAGAAGAGCATCAACAA+CGG | - | chr4_1:53390648-53390667 | None:intergenic | 35.0% |
| !! | ATGATTTTGACGATGATCAG+TGG | + | chr4_1:53390774-53390793 | Msa0555380:CDS | 35.0% |
| !! | TGATTTTGACGATGATCAGT+GGG | + | chr4_1:53390775-53390794 | Msa0555380:CDS | 35.0% |
| CTTATAAACCAATCCCTTTC+CGG | - | chr4_1:53391002-53391021 | None:intergenic | 35.0% | |
| GAAGAATGATATTCTAACCC+AGG | - | chr4_1:53391058-53391077 | None:intergenic | 35.0% | |
| AGAATATCATTCTTCCACTG+TGG | + | chr4_1:53391063-53391082 | Msa0555380:CDS | 35.0% | |
| GAATATCATTCTTCCACTGT+GGG | + | chr4_1:53391064-53391083 | Msa0555380:CDS | 35.0% | |
| AATATCATTCTTCCACTGTG+GGG | + | chr4_1:53391065-53391084 | Msa0555380:CDS | 35.0% | |
| CGCATTATTAATCGTGGATT+TGG | + | chr4_1:53391088-53391107 | Msa0555380:CDS | 35.0% | |
| CTAAATCAAAAGTCCTGCAT+AGG | - | chr4_1:53391154-53391173 | None:intergenic | 35.0% | |
| CAGCATTTGTATAGACAGTA+AGG | - | chr4_1:53391231-53391250 | None:intergenic | 35.0% | |
| !! | ACATTTTGATCAGCAAGACT+TGG | - | chr4_1:53391263-53391282 | None:intergenic | 35.0% |
| !!! | GTCATTTTGGTGTTTGTCAT+CGG | + | chr4_1:53391281-53391300 | Msa0555380:CDS | 35.0% |
| !!! | TCATTTTGGTGTTTGTCATC+GGG | + | chr4_1:53391282-53391301 | Msa0555380:CDS | 35.0% |
| AACCAACTAGTGTTATGTGT+CGG | - | chr4_1:53391373-53391392 | None:intergenic | 35.0% | |
| AGTAAATCAAGCATGTCATC+AGG | - | chr4_1:53391623-53391642 | None:intergenic | 35.0% | |
| GACATGCTTGATTTACTACT+AGG | + | chr4_1:53391626-53391645 | Msa0555380:CDS | 35.0% | |
| CATGCTTGATTTACTACTAG+GGG | + | chr4_1:53391628-53391647 | Msa0555380:CDS | 35.0% | |
| ! | AACAGTCCCGTTTTCCTATT+GGG | - | chr4_1:53386279-53386298 | None:intergenic | 40.0% |
| ! | TATCCTTCGTCTTTTCTCTC+CGG | - | chr4_1:53386312-53386331 | None:intergenic | 40.0% |
| CGAAGAAATCGCGATTGAAT+CGG | - | chr4_1:53386344-53386363 | None:intergenic | 40.0% | |
| CGATTCAATCGCGATTTCTT+CGG | + | chr4_1:53386342-53386361 | Msa0555380:five_prime_UTR | 40.0% | |
| GAATTAAGAGTGGAGTGGAA+AGG | - | chr4_1:53386400-53386419 | None:intergenic | 40.0% | |
| ATCTTTGCGTTTGCGTTCAA+AGG | + | chr4_1:53386451-53386470 | Msa0555380:five_prime_UTR | 40.0% | |
| GGAATTGGATACCTGTGTAA+TGG | - | chr4_1:53386515-53386534 | None:intergenic | 40.0% | |
| CAGATTTCGGAAGACATTGA+AGG | + | chr4_1:53386660-53386679 | Msa0555380:intron | 40.0% | |
| AAACATGACTGCACTTGATG+TGG | + | chr4_1:53386785-53386804 | Msa0555380:CDS | 40.0% | |
| TGCACTGTTGCATGTTCAAA+TGG | - | chr4_1:53387182-53387201 | None:intergenic | 40.0% | |
| ATACACAGACACGCAAATGA+TGG | - | chr4_1:53387305-53387324 | None:intergenic | 40.0% | |
| GGAGTGATAAATAAGCACCT+CGG | - | chr4_1:53387597-53387616 | None:intergenic | 40.0% | |
| ATCTTGCACCATTGTCCATA+TGG | + | chr4_1:53388084-53388103 | Msa0555380:intron | 40.0% | |
| !! | TTTAATGGTGGTGGTCGAAT+TGG | + | chr4_1:53388238-53388257 | Msa0555380:intron | 40.0% |
| CTAGCTGTTGTGGAATAGTT+TGG | + | chr4_1:53388261-53388280 | Msa0555380:intron | 40.0% | |
| CTCAGGAACAAGTTTAACAC+AGG | + | chr4_1:53388313-53388332 | Msa0555380:intron | 40.0% | |
| ! | CTTGAACTAGCTTCAAGATG+GGG | - | chr4_1:53388790-53388809 | None:intergenic | 40.0% |
| ! | CACTTGAACTAGCTTCAAGA+TGG | - | chr4_1:53388792-53388811 | None:intergenic | 40.0% |
| CATCTTGAAGCTAGTTCAAG+TGG | + | chr4_1:53388790-53388809 | Msa0555380:intron | 40.0% | |
| CATGCACTGTATCTGCAATA+AGG | - | chr4_1:53388846-53388865 | None:intergenic | 40.0% | |
| TGCAGATACAGTGCATGAAT+TGG | + | chr4_1:53388849-53388868 | Msa0555380:intron | 40.0% | |
| GCATTTGTTCTTCCTTCAGA+AGG | + | chr4_1:53388922-53388941 | Msa0555380:CDS | 40.0% | |
| TGTTCTTCCTTCAGAAGGAT+TGG | + | chr4_1:53388927-53388946 | Msa0555380:CDS | 40.0% | |
| CATGAAGATTCCATTACTCC+TGG | + | chr4_1:53388976-53388995 | Msa0555380:CDS | 40.0% | |
| GAAATGTGTGCAACAACTTC+TGG | + | chr4_1:53389123-53389142 | Msa0555380:intron | 40.0% | |
| AACCTCACTTAATGGGGAAA+AGG | + | chr4_1:53389444-53389463 | Msa0555380:intron | 40.0% | |
| ! | ATCCTTTTCCCCATTAAGTG+AGG | - | chr4_1:53389449-53389468 | None:intergenic | 40.0% |
| ! | GGTGTAGATGGACTTGAAAA+TGG | + | chr4_1:53389587-53389606 | Msa0555380:intron | 40.0% |
| ATCAATGAGTAAAAGCCCCA+CGG | - | chr4_1:53389703-53389722 | None:intergenic | 40.0% | |
| GGGGCAAAGCAGAAAATATA+CGG | - | chr4_1:53389776-53389795 | None:intergenic | 40.0% | |
| GAAGTTGTTCTTTCTCTACG+GGG | - | chr4_1:53389795-53389814 | None:intergenic | 40.0% | |
| GGAAGTTGTTCTTTCTCTAC+GGG | - | chr4_1:53389796-53389815 | None:intergenic | 40.0% | |
| GGGAAGTTGTTCTTTCTCTA+CGG | - | chr4_1:53389797-53389816 | None:intergenic | 40.0% | |
| AGAACAACTTCCCATATCCT+AGG | + | chr4_1:53389804-53389823 | Msa0555380:CDS | 40.0% | |
| TGAACCTTTGCCTAGGATAT+GGG | - | chr4_1:53389817-53389836 | None:intergenic | 40.0% | |
| !!! | TTGAAGCTTTTTTATGCGGG+TGG | + | chr4_1:53389961-53389980 | Msa0555380:CDS | 40.0% |
| ATATCTACACCAGAGTGACT+TGG | - | chr4_1:53390053-53390072 | None:intergenic | 40.0% | |
| TCTGGTGTAGATATACTCAC+CGG | + | chr4_1:53390059-53390078 | Msa0555380:CDS | 40.0% | |
| ATCAGAGGAGACAAAAGATC+CGG | - | chr4_1:53390081-53390100 | None:intergenic | 40.0% | |
| CACGCCATGAAAATTATCAG+AGG | - | chr4_1:53390096-53390115 | None:intergenic | 40.0% | |
| ! | TAGCAAAGATGATTGGCTCT+TGG | - | chr4_1:53390282-53390301 | None:intergenic | 40.0% |
| AGAGCCAATCATCTTTGCTA+AGG | + | chr4_1:53390282-53390301 | Msa0555380:intron | 40.0% | |
| ATAATGTGGCTGACGCTAAT+AGG | - | chr4_1:53390322-53390341 | None:intergenic | 40.0% | |
| GGTGCAATTTGATTCCTCAA+GGG | - | chr4_1:53390348-53390367 | None:intergenic | 40.0% | |
| TGGTGCAATTTGATTCCTCA+AGG | - | chr4_1:53390349-53390368 | None:intergenic | 40.0% | |
| ACTGCTAAATGCATCCCATT+TGG | - | chr4_1:53390369-53390388 | None:intergenic | 40.0% | |
| TATGAGATCGCCAATTTGAG+CGG | - | chr4_1:53390441-53390460 | None:intergenic | 40.0% | |
| ! | CATAAATCAGAGTGCTCTGT+TGG | + | chr4_1:53390457-53390476 | Msa0555380:CDS | 40.0% |
| AGGGAAAAAGGATATCTCGA+AGG | + | chr4_1:53390496-53390515 | Msa0555380:CDS | 40.0% | |
| GGGAAAAAGGATATCTCGAA+GGG | + | chr4_1:53390497-53390516 | Msa0555380:CDS | 40.0% | |
| ATCATCAATCTCCAGCTCTT+CGG | - | chr4_1:53390759-53390778 | None:intergenic | 40.0% | |
| !! | GATTTTGACGATGATCAGTG+GGG | + | chr4_1:53390776-53390795 | Msa0555380:CDS | 40.0% |
| TGGTGACATGCAACTAAAGT+TGG | + | chr4_1:53390850-53390869 | Msa0555380:CDS | 40.0% | |
| TAAAGTTGGAGTTGCGTGAT+AGG | + | chr4_1:53390864-53390883 | Msa0555380:CDS | 40.0% | |
| AAAGTTGGAGTTGCGTGATA+GGG | + | chr4_1:53390865-53390884 | Msa0555380:CDS | 40.0% | |
| AAGAATCTACCATTGAGGGA+TGG | + | chr4_1:53390935-53390954 | Msa0555380:CDS | 40.0% | |
| TTCATCAAAACTGCCTTCCA+CGG | - | chr4_1:53390969-53390988 | None:intergenic | 40.0% | |
| TTTGATGAAGATGCCTATGC+CGG | + | chr4_1:53390980-53390999 | Msa0555380:CDS | 40.0% | |
| !! | CGGAAAGGGATTGGTTTATA+AGG | + | chr4_1:53391000-53391019 | Msa0555380:CDS | 40.0% |
| GAACCATAATCACCTGACTA+TGG | - | chr4_1:53391126-53391145 | None:intergenic | 40.0% | |
| TATGGTTCCTTAACCTATGC+AGG | + | chr4_1:53391138-53391157 | Msa0555380:intron | 40.0% | |
| CAAAAGTCCTGCATAGGTTA+AGG | - | chr4_1:53391148-53391167 | None:intergenic | 40.0% | |
| !!! | CATTTTGGTGTTTGTCATCG+GGG | + | chr4_1:53391283-53391302 | Msa0555380:CDS | 40.0% |
| !!! | ATTTTGGTGTTTGTCATCGG+GGG | + | chr4_1:53391284-53391303 | Msa0555380:CDS | 40.0% |
| GGTGAAATTCTCAAATGCCT+TGG | + | chr4_1:53391322-53391341 | Msa0555380:intron | 40.0% | |
| GGAAATAGAAAGAAGGATGG+AGG | - | chr4_1:53391351-53391370 | None:intergenic | 40.0% | |
| TCGGGAAATAGAAAGAAGGA+TGG | - | chr4_1:53391354-53391373 | None:intergenic | 40.0% | |
| TGTGTCGGGAAATAGAAAGA+AGG | - | chr4_1:53391358-53391377 | None:intergenic | 40.0% | |
| ACCAACTAGTGTTATGTGTC+GGG | - | chr4_1:53391372-53391391 | None:intergenic | 40.0% | |
| ! | CTAGTTGGTTTCTACCAACT+TGG | + | chr4_1:53391383-53391402 | Msa0555380:intron | 40.0% |
| GATCCTTTATTCGCATCAAG+CGG | + | chr4_1:53391478-53391497 | Msa0555380:intron | 40.0% | |
| TTACCGCTTGATGCGAATAA+AGG | - | chr4_1:53391484-53391503 | None:intergenic | 40.0% | |
| CCAACAAGCAACTCTATATC+AGG | - | chr4_1:53391581-53391600 | None:intergenic | 40.0% | |
| CCTGATATAGAGTTGCTTGT+TGG | + | chr4_1:53391578-53391597 | Msa0555380:CDS | 40.0% | |
| ! | GATATAGAGTTGCTTGTTGG+TGG | + | chr4_1:53391581-53391600 | Msa0555380:CDS | 40.0% |
| ! | CAACAGTCCCGTTTTCCTAT+TGG | - | chr4_1:53386280-53386299 | None:intergenic | 45.0% |
| TGCGTTTGCGTTCAAAGGAA+TGG | + | chr4_1:53386456-53386475 | Msa0555380:exon | 45.0% | |
| !! | TTGCATCGACTCCATTACAC+AGG | + | chr4_1:53386501-53386520 | Msa0555380:CDS | 45.0% |
| TTGATGTGGCAGCACATCAT+CGG | - | chr4_1:53387026-53387045 | None:intergenic | 45.0% | |
| GTAAACGCAGAAATCTGAGC+TGG | - | chr4_1:53387340-53387359 | None:intergenic | 45.0% | |
| TGATCGTGCGAGAAAACTTG+TGG | + | chr4_1:53387472-53387491 | Msa0555380:CDS | 45.0% | |
| GTCTACTAAGTGACGCACAT+CGG | + | chr4_1:53387507-53387526 | Msa0555380:CDS | 45.0% | |
| GAACAACTTGATGTGTCGTC+AGG | - | chr4_1:53387547-53387566 | None:intergenic | 45.0% | |
| ACAGGTCATGTCATCAGTTG+AGG | + | chr4_1:53388331-53388350 | Msa0555380:intron | 45.0% | |
| AGTGTTTCCTGATTCACCTC+TGG | + | chr4_1:53388600-53388619 | Msa0555380:CDS | 45.0% | |
| GTGTTTCCTGATTCACCTCT+GGG | + | chr4_1:53388601-53388620 | Msa0555380:CDS | 45.0% | |
| ! | CAGGGGCATATAGTGACTAT+GGG | + | chr4_1:53388626-53388645 | Msa0555380:CDS | 45.0% |
| GGGAAAAAACCTAGGCAGAT+TGG | + | chr4_1:53388691-53388710 | Msa0555380:CDS | 45.0% | |
| AACATGCTACCAATCTGCCT+AGG | - | chr4_1:53388703-53388722 | None:intergenic | 45.0% | |
| ! | GCAGATTGGTAGCATGTTAC+AGG | + | chr4_1:53388705-53388724 | Msa0555380:CDS | 45.0% |
| TCTTCCTTCAGAAGGATTGG+TGG | + | chr4_1:53388930-53388949 | Msa0555380:CDS | 45.0% | |
| ! | GAGATCAAGCCAGTACTGAA+GGG | - | chr4_1:53389009-53389028 | None:intergenic | 45.0% |
| ! | AGAGATCAAGCCAGTACTGA+AGG | - | chr4_1:53389010-53389029 | None:intergenic | 45.0% |
| ! | ATACTGATGATGTGCCTCCT+GGG | + | chr4_1:53389031-53389050 | Msa0555380:CDS | 45.0% |
| AGCACACTTCCTCTACCATT+TGG | + | chr4_1:53389065-53389084 | Msa0555380:CDS | 45.0% | |
| TTGTTACCTTGGCTGCCAAA+TGG | - | chr4_1:53389083-53389102 | None:intergenic | 45.0% | |
| !!! | GGCACACTTCAGCCTTTTTT+TGG | + | chr4_1:53389294-53389313 | Msa0555380:intron | 45.0% |
| ATGACATTGGTCGCCGTAAA+CGG | + | chr4_1:53389676-53389695 | Msa0555380:CDS | 45.0% | |
| ACTTCCCATATCCTAGGCAA+AGG | + | chr4_1:53389810-53389829 | Msa0555380:CDS | 45.0% | |
| CTGAACCTTTGCCTAGGATA+TGG | - | chr4_1:53389818-53389837 | None:intergenic | 45.0% | |
| CATATCCTAGGCAAAGGTTC+AGG | + | chr4_1:53389816-53389835 | Msa0555380:intron | 45.0% | |
| TCAGGAAGCCAACTCAAACT+TGG | + | chr4_1:53389834-53389853 | Msa0555380:intron | 45.0% | |
| ! | CATCTAAAGGAGCACGTTGA+AGG | - | chr4_1:53389869-53389888 | None:intergenic | 45.0% |
| ! | TTTTTATGCGGGTGGAACTC+TGG | + | chr4_1:53389969-53389988 | Msa0555380:CDS | 45.0% |
| TATGACAAGCCAAGTCACTC+TGG | + | chr4_1:53390041-53390060 | Msa0555380:CDS | 45.0% | |
| !! | TTTTCATGGCGTGCCATTCT+TGG | + | chr4_1:53390103-53390122 | Msa0555380:CDS | 45.0% |
| ! | TTCCTCAAGGGCTGATAATG+TGG | - | chr4_1:53390336-53390355 | None:intergenic | 45.0% |
| AAAACTCTGAGCGTAAGCTC+TGG | + | chr4_1:53390395-53390414 | Msa0555380:CDS | 45.0% | |
| CAAAGTCTTGCCGCTCAAAT+TGG | + | chr4_1:53390428-53390447 | Msa0555380:CDS | 45.0% | |
| ! | GGTCAGAATTTTCCAACAGC+TGG | + | chr4_1:53390575-53390594 | Msa0555380:intron | 45.0% |
| !! | TTTCCAACAGCTGGTTCTGA+TGG | + | chr4_1:53390584-53390603 | Msa0555380:CDS | 45.0% |
| !! | TTCCAACAGCTGGTTCTGAT+GGG | + | chr4_1:53390585-53390604 | Msa0555380:CDS | 45.0% |
| !! | GTTCTGATGGGCCATTTTCT+TGG | + | chr4_1:53390597-53390616 | Msa0555380:CDS | 45.0% |
| CGTTCCTCTTGCCAAGAAAA+TGG | - | chr4_1:53390611-53390630 | None:intergenic | 45.0% | |
| GTCAATGAACCATCCCTCAA+TGG | - | chr4_1:53390947-53390966 | None:intergenic | 45.0% | |
| ! | TAAGGTATTAGCAAGGGTGC+TGG | + | chr4_1:53391018-53391037 | Msa0555380:CDS | 45.0% |
| !! | AAGGTATTAGCAAGGGTGCT+GGG | + | chr4_1:53391019-53391038 | Msa0555380:CDS | 45.0% |
| ATTAATAATGCGCCCCACAG+TGG | - | chr4_1:53391080-53391099 | None:intergenic | 45.0% | |
| CGTGGATTTGGAAGACTTCT+TGG | + | chr4_1:53391100-53391119 | Msa0555380:CDS | 45.0% | |
| AAGACTTCTTGGCCATAGTC+AGG | + | chr4_1:53391111-53391130 | Msa0555380:CDS | 45.0% | |
| TGGCCATAGTCAGGTGATTA+TGG | + | chr4_1:53391120-53391139 | Msa0555380:intron | 45.0% | |
| !! | TTTGTCATCGGGGGCATTAA+TGG | + | chr4_1:53391293-53391312 | Msa0555380:CDS | 45.0% |
| TCCCGACACATAACACTAGT+TGG | + | chr4_1:53391368-53391387 | Msa0555380:intron | 45.0% | |
| !!! | TTATAAATTAATTTTACAAA+AGG | - | chr4_1:53387249-53387268 | None:intergenic | 5.0% |
| !!! | TTCATAATTTTTTTTTTTTT+TGG | + | chr4_1:53387818-53387837 | Msa0555380:intron | 5.0% |
| !!! | ATTATCATATTTTTTAAAAA+TGG | - | chr4_1:53391181-53391200 | None:intergenic | 5.0% |
| !!! | TTGTAATTTTTAAATTTTAT+AGG | + | chr4_1:53391736-53391755 | Msa0555380:three_prime_UTR | 5.0% |
| !!! | GTTTATATTTTTAATTTTTT+TGG | + | chr4_1:53391761-53391780 | Msa0555380:three_prime_UTR | 5.0% |
| ! | CTTCGTCTTTTCTCTCCGGT+CGG | - | chr4_1:53386308-53386327 | None:intergenic | 50.0% |
| GCACCGAGTTCAAGAAGAAC+AGG | - | chr4_1:53386744-53386763 | None:intergenic | 50.0% | |
| TGCACGAGCTGTCTGTAGTT+TGG | + | chr4_1:53386761-53386780 | Msa0555380:CDS | 50.0% | |
| TCCTCATTCAGGTGGGTGAT+TGG | + | chr4_1:53387438-53387457 | Msa0555380:intron | 50.0% | |
| TCCAATCACCCACCTGAATG+AGG | - | chr4_1:53387442-53387461 | None:intergenic | 50.0% | |
| ! | GTCGAATTGGCTAGCTGTTG+TGG | + | chr4_1:53388251-53388270 | Msa0555380:intron | 50.0% |
| CCATAGTCACTATATGCCCC+TGG | - | chr4_1:53388628-53388647 | None:intergenic | 50.0% | |
| ! | CCAGGGGCATATAGTGACTA+TGG | + | chr4_1:53388625-53388644 | Msa0555380:CDS | 50.0% |
| CGCTTTCAGTTTCCTTCCAC+TGG | + | chr4_1:53388754-53388773 | Msa0555380:CDS | 50.0% | |
| TCAGTTTCCTTCCACTGGAG+AGG | + | chr4_1:53388759-53388778 | Msa0555380:CDS | 50.0% | |
| TCAGCCACCAATCCTTCTGA+AGG | - | chr4_1:53388937-53388956 | None:intergenic | 50.0% | |
| ! | ATCAAGCCAGTACTGAAGGG+AGG | - | chr4_1:53389006-53389025 | None:intergenic | 50.0% |
| ! | GATACTGATGATGTGCCTCC+TGG | + | chr4_1:53389030-53389049 | Msa0555380:CDS | 50.0% |
| ! | TACTGATGATGTGCCTCCTG+GGG | + | chr4_1:53389032-53389051 | Msa0555380:CDS | 50.0% |
| TGCCAGCATCACAAGCTTAC+TGG | + | chr4_1:53389271-53389290 | Msa0555380:intron | 50.0% | |
| GCCAGCATCACAAGCTTACT+GGG | + | chr4_1:53389272-53389291 | Msa0555380:intron | 50.0% | |
| CCAGCATCACAAGCTTACTG+GGG | + | chr4_1:53389273-53389292 | Msa0555380:intron | 50.0% | |
| CTTCTCACTCCTTGTTGCCA+CGG | + | chr4_1:53389735-53389754 | Msa0555380:CDS | 50.0% | |
| TTCTCACTCCTTGTTGCCAC+GGG | + | chr4_1:53389736-53389755 | Msa0555380:CDS | 50.0% | |
| CTCTGGTGACTCTGATTCTC+AGG | + | chr4_1:53389986-53390005 | Msa0555380:CDS | 50.0% | |
| ! | GGGCCGTACTGGTAAAGAAA+TGG | + | chr4_1:53390156-53390175 | Msa0555380:CDS | 50.0% |
| GCTACAAGAAGCTATGCGCA+GGG | + | chr4_1:53390178-53390197 | Msa0555380:CDS | 50.0% | |
| AGCCACATTATCAGCCCTTG+AGG | + | chr4_1:53390331-53390350 | Msa0555380:CDS | 50.0% | |
| TTGAGCGGCAAGACTTTGAC+TGG | - | chr4_1:53390426-53390445 | None:intergenic | 50.0% | |
| !! | TGGGCCATTTTCTTGGCAAG+AGG | + | chr4_1:53390604-53390623 | Msa0555380:CDS | 50.0% |
| ACGATGATCAGTGGGGCAAA+TGG | + | chr4_1:53390783-53390802 | Msa0555380:CDS | 50.0% | |
| CGATGATCAGTGGGGCAAAT+GGG | + | chr4_1:53390784-53390803 | Msa0555380:CDS | 50.0% | |
| GATGATCAGTGGGGCAAATG+GGG | + | chr4_1:53390785-53390804 | Msa0555380:CDS | 50.0% | |
| GGCAAATGGGGTGATGAAGA+TGG | + | chr4_1:53390797-53390816 | Msa0555380:CDS | 50.0% | |
| ATGGGGTGATGAAGATGGTG+AGG | + | chr4_1:53390802-53390821 | Msa0555380:CDS | 50.0% | |
| GATGGTTCATTGACCGTGGA+AGG | + | chr4_1:53390953-53390972 | Msa0555380:CDS | 50.0% | |
| TGAAGATGCCTATGCCGGAA+AGG | + | chr4_1:53390985-53391004 | Msa0555380:CDS | 50.0% | |
| GAAGATGCCTATGCCGGAAA+GGG | + | chr4_1:53390986-53391005 | Msa0555380:CDS | 50.0% | |
| AACCAATCCCTTTCCGGCAT+AGG | - | chr4_1:53390996-53391015 | None:intergenic | 50.0% | |
| GTGGGGCGCATTATTAATCG+TGG | + | chr4_1:53391082-53391101 | Msa0555380:CDS | 50.0% | |
| AAGAAGGATGGAGGAGACCA+AGG | - | chr4_1:53391342-53391361 | None:intergenic | 50.0% | |
| TTACCTAGGTGCGTCAAGCA+AGG | + | chr4_1:53391531-53391550 | Msa0555380:intron | 50.0% | |
| CGACCGGAGAGAAAAGACGA+AGG | + | chr4_1:53386306-53386325 | Msa0555380:five_prime_UTR | 55.0% | |
| !! | CTGATTCACCTCTGGGACCA+GGG | + | chr4_1:53388608-53388627 | Msa0555380:CDS | 55.0% |
| !! | TGATTCACCTCTGGGACCAG+GGG | + | chr4_1:53388609-53388628 | Msa0555380:CDS | 55.0% |
| GGAACATCCTCTCCAGTGGA+AGG | - | chr4_1:53388769-53388788 | None:intergenic | 55.0% | |
| ATGGGGAACATCCTCTCCAG+TGG | - | chr4_1:53388773-53388792 | None:intergenic | 55.0% | |
| GGGAGGCAAACCAGGAGTAA+TGG | - | chr4_1:53388989-53389008 | None:intergenic | 55.0% | |
| GTACTGAAGGGAGGCAAACC+AGG | - | chr4_1:53388997-53389016 | None:intergenic | 55.0% | |
| GGTTTGCCTCCCTTCAGTAC+TGG | + | chr4_1:53388997-53389016 | Msa0555380:CDS | 55.0% | |
| TGTGCTGTAAGAGTTGCCCC+AGG | - | chr4_1:53389051-53389070 | None:intergenic | 55.0% | |
| CCTTGGCTGCCAAATGGTAG+AGG | - | chr4_1:53389077-53389096 | None:intergenic | 55.0% | |
| CCTCTACCATTTGGCAGCCA+AGG | + | chr4_1:53389074-53389093 | Msa0555380:CDS | 55.0% | |
| CCCCAGTAAGCTTGTGATGC+TGG | - | chr4_1:53389276-53389295 | None:intergenic | 55.0% | |
| AAAGCCCCACGGACCGTTTA+CGG | - | chr4_1:53389692-53389711 | None:intergenic | 55.0% | |
| TCTCACTCCTTGTTGCCACG+GGG | + | chr4_1:53389737-53389756 | Msa0555380:CDS | 55.0% | |
| GGTCAATAAGTGAGTCCCCG+TGG | - | chr4_1:53389755-53389774 | None:intergenic | 55.0% | |
| GGCTTCCTGAACCTTTGCCT+AGG | - | chr4_1:53389824-53389843 | None:intergenic | 55.0% | |
| AACAAAACGTGGGGCCGTAC+TGG | + | chr4_1:53390145-53390164 | Msa0555380:CDS | 55.0% | |
| GGCTACAAGAAGCTATGCGC+AGG | + | chr4_1:53390177-53390196 | Msa0555380:CDS | 55.0% | |
| AGAGGAAGCTACCGAAGAGC+TGG | + | chr4_1:53390745-53390764 | Msa0555380:CDS | 55.0% | |
| GTTGGAGTTGCGTGATAGGG+TGG | + | chr4_1:53390868-53390887 | Msa0555380:intron | 55.0% | |
| GAGGGATGGTTCATTGACCG+TGG | + | chr4_1:53390949-53390968 | Msa0555380:CDS | 55.0% | |
| TGCCTATGCCGGAAAGGGAT+TGG | + | chr4_1:53390991-53391010 | Msa0555380:CDS | 55.0% | |
| TGGGCAAGTACGATGTGCCT+GGG | + | chr4_1:53391038-53391057 | Msa0555380:CDS | 55.0% | |
| !! | CGGGGGCATTAATGGACTAG+AGG | + | chr4_1:53391301-53391320 | Msa0555380:CDS | 55.0% |
| !! | AGGCAGGCATTGGTTGACAG+CGG | + | chr4_1:53391551-53391570 | Msa0555380:CDS | 55.0% |
| GGGACTGTTGTCTGACCGAC+CGG | + | chr4_1:53386290-53386309 | Msa0555380:five_prime_UTR | 60.0% | |
| CCTGGTCCCAGAGGTGAATC+AGG | - | chr4_1:53388610-53388629 | None:intergenic | 60.0% | |
| !! | CCTGATTCACCTCTGGGACC+AGG | + | chr4_1:53388607-53388626 | Msa0555380:CDS | 60.0% |
| CTATATGCCCCTGGTCCCAG+AGG | - | chr4_1:53388619-53388638 | None:intergenic | 60.0% | |
| GCTGTAAGAGTTGCCCCAGG+AGG | - | chr4_1:53389048-53389067 | None:intergenic | 60.0% | |
| AGTGAGTCCCCGTGGCAACA+AGG | - | chr4_1:53389747-53389766 | None:intergenic | 60.0% | |
| GGCCCATCAGAACCAGCTGT+TGG | - | chr4_1:53390590-53390609 | None:intergenic | 60.0% | |
| CTGGGCAAGTACGATGTGCC+TGG | + | chr4_1:53391037-53391056 | Msa0555380:CDS | 60.0% | |
| CTGCCTTGCTTGACGCACCT+AGG | - | chr4_1:53391537-53391556 | None:intergenic | 60.0% | |
| CTAGGTGCGTCAAGCAAGGC+AGG | + | chr4_1:53391535-53391554 | Msa0555380:intron | 60.0% | |
| GCGTCAAGCAAGGCAGGCAT+TGG | + | chr4_1:53391541-53391560 | Msa0555380:CDS | 60.0% | |
| TGGTCGCCGTAAACGGTCCG+TGG | + | chr4_1:53389683-53389702 | Msa0555380:CDS | 65.0% | |
| GGTCGCCGTAAACGGTCCGT+GGG | + | chr4_1:53389684-53389703 | Msa0555380:CDS | 65.0% | |
| GTCGCCGTAAACGGTCCGTG+GGG | + | chr4_1:53389685-53389704 | Msa0555380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53386252 | 53391870 | 53386252 | ID=Msa0555380;Name=Msa0555380 |
| chr4_1 | mRNA | 53386252 | 53391870 | 53386252 | ID=Msa0555380-mRNA-1;Parent=Msa0555380;Name=Msa0555380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=223|0.46|0.35|1|0.46|0.35|14|203|793 |
| chr4_1 | exon | 53386252 | 53386522 | 53386252 | ID=Msa0555380-mRNA-1:exon:15490;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53386663 | 53386806 | 53386663 | ID=Msa0555380-mRNA-1:exon:15491;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53387449 | 53387598 | 53387449 | ID=Msa0555380-mRNA-1:exon:15492;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53388589 | 53388808 | 53388589 | ID=Msa0555380-mRNA-1:exon:15493;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53388854 | 53389095 | 53388854 | ID=Msa0555380-mRNA-1:exon:15494;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53389594 | 53389831 | 53389594 | ID=Msa0555380-mRNA-1:exon:15495;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53389838 | 53390007 | 53389838 | ID=Msa0555380-mRNA-1:exon:15496;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53390035 | 53390276 | 53390035 | ID=Msa0555380-mRNA-1:exon:15497;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53390304 | 53390518 | 53390304 | ID=Msa0555380-mRNA-1:exon:15498;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53390576 | 53390679 | 53390576 | ID=Msa0555380-mRNA-1:exon:15499;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53390692 | 53390886 | 53390692 | ID=Msa0555380-mRNA-1:exon:15500;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53390917 | 53391132 | 53390917 | ID=Msa0555380-mRNA-1:exon:15501;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53391254 | 53391322 | 53391254 | ID=Msa0555380-mRNA-1:exon:15502;Parent=Msa0555380-mRNA-1 |
| chr4_1 | exon | 53391539 | 53391870 | 53391539 | ID=Msa0555380-mRNA-1:exon:15503;Parent=Msa0555380-mRNA-1 |
| chr4_1 | five_prime_UTR | 53386252 | 53386474 | 53386252 | ID=Msa0555380-mRNA-1:five_prime_utr;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53386475 | 53386522 | 53386475 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53386663 | 53386806 | 53386663 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53387449 | 53387598 | 53387449 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53388589 | 53388808 | 53388589 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53388854 | 53389095 | 53388854 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53389594 | 53389831 | 53389594 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53389838 | 53390007 | 53389838 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53390035 | 53390276 | 53390035 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53390304 | 53390518 | 53390304 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53390576 | 53390679 | 53390576 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53390692 | 53390886 | 53390692 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53390917 | 53391132 | 53390917 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53391254 | 53391322 | 53391254 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | CDS | 53391539 | 53391667 | 53391539 | ID=Msa0555380-mRNA-1:cds;Parent=Msa0555380-mRNA-1 |
| chr4_1 | three_prime_UTR | 53391668 | 53391870 | 53391668 | ID=Msa0555380-mRNA-1:three_prime_utr;Parent=Msa0555380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
