AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447180 MtrunA17_Chr1g0197441 99.701 334 1 0 1 334 1 334 0.0 673
Msa1447180 MtrunA17_Chr2g0285771 27.523 327 179 10 38 322 315 625 1.97e-20 92.0
Msa1447180 MtrunA17_Chr3g0102101 91.892 37 3 0 146 182 2 38 4.35e-17 73.9
Msa1447180 MtrunA17_Chr8g0376551 26.844 339 206 8 18 322 297 627 2.76e-16 79.7
Msa1447180 MtrunA17_Chr1g0151761 28.155 206 123 6 39 232 115 307 3.44e-13 70.5
Msa1447180 MtrunA17_Chr6g0453421 23.611 216 141 6 36 230 47 259 3.26e-12 67.4
Msa1447180 MtrunA17_Chr3g0135621 29.310 174 89 6 39 192 89 248 1.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447180 AT5G04430.2 68.373 332 104 1 1 332 1 331 9.88e-168 470
Msa1447180 AT5G04430.1 64.759 332 95 2 1 332 1 310 1.06e-153 434
Msa1447180 AT4G10070.1 28.723 188 115 4 36 212 176 355 2.02e-12 68.6
Msa1447180 AT1G33680.1 30.286 175 112 5 36 207 232 399 3.26e-12 67.8
Msa1447180 AT1G51580.1 23.562 365 208 10 22 322 255 612 4.51e-12 67.4
Msa1447180 AT4G18375.1 27.119 295 172 12 50 322 113 386 6.85e-12 66.2
Msa1447180 AT4G18375.2 27.119 295 172 12 50 322 326 599 7.67e-12 66.6
Msa1447180 AT5G15270.2 24.911 281 175 11 36 291 50 319 1.51e-11 65.9
Msa1447180 AT5G15270.1 24.911 281 175 11 36 291 50 319 1.51e-11 65.9
Msa1447180 AT5G15270.3 24.911 281 175 11 36 291 50 319 1.62e-11 65.5
Msa1447180 AT4G26000.1 28.824 170 97 5 39 192 77 238 1.85e-11 65.5

Find 127 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATACATTTGCTGAATTT+TGG 0.055610 tig0031610:+18788 Msa1447180:three_prime_UTR
TCTGCTGCTGGTTCTGTTAT+TGG 0.155104 tig0031610:+15281 Msa1447180:CDS
AGTTCTCCATTTACATATTC+TGG 0.187488 tig0031610:+16180 Msa1447180:CDS
GGTTCTTGTGGTGGAATAAT+TGG 0.190144 tig0031610:+15630 Msa1447180:CDS
CTTGTCTACTGTTAGATTCT+TGG 0.203877 tig0031610:+18748 Msa1447180:three_prime_UTR
GTTGTCAACTTGTCATTATT+TGG 0.211188 tig0031610:+19226 Msa1447180:three_prime_UTR
GCATGTTATTTCATGTTTAT+TGG 0.218688 tig0031610:+19204 Msa1447180:three_prime_UTR
TGCTTATGTCTCGGGTTATC+AGG 0.225760 tig0031610:+17126 Msa1447180:CDS
TGAGGAAAACCTTGCTGTTC+TGG 0.228212 tig0031610:-17237 None:intergenic
GCCAACGTATGTTAGGTTTC+TGG 0.253097 tig0031610:+15250 Msa1447180:CDS
GCGTGCTTCCTCGGTCCTTC+TGG 0.266060 tig0031610:-13364 None:intergenic
TGACTTATATCTTCAATTAC+TGG 0.276378 tig0031610:+19075 Msa1447180:three_prime_UTR
GAAACGAAGGAGTGAGAATT+AGG 0.276588 tig0031610:+13264 Msa1447180:intron
TGAACTTAGACCGTTCTTAC+AGG 0.295434 tig0031610:+18896 Msa1447180:three_prime_UTR
TCTGTCACTTGATATACTTT+TGG 0.306763 tig0031610:+18831 Msa1447180:three_prime_UTR
ATAGTTCTAAATACTACATT+TGG 0.332776 tig0031610:-18977 None:intergenic
CACTGACCAGAATATGTAAA+TGG 0.348856 tig0031610:-16186 None:intergenic
GACAGAGGCGATTACATATC+TGG 0.356100 tig0031610:+18475 Msa1447180:CDS
CAGATTAATCAAATACAAAA+TGG 0.361532 tig0031610:-19267 None:intergenic
TAGAAAAGCCAACGTATGTT+AGG 0.363086 tig0031610:+15243 Msa1447180:CDS
ATTCAAAAGATAAGATCTAT+TGG 0.364020 tig0031610:+18935 Msa1447180:three_prime_UTR
TTCAATTACTGGCCTGAGAT+AGG 0.364764 tig0031610:+19086 Msa1447180:three_prime_UTR
GCTTTATATGATTAGCTTCA+CGG 0.375367 tig0031610:+15552 Msa1447180:intron
CCTCAAGATAATAGTTACTA+TGG 0.376647 tig0031610:+16048 Msa1447180:CDS
GATGGAAGCACATATGTATA+TGG 0.380012 tig0031610:-17154 None:intergenic
ATTCATTATTGCGTGACAAC+TGG 0.381238 tig0031610:-15355 None:intergenic
TGCTCTCTGCGATCCCGTTA+TGG 0.386979 tig0031610:-18647 None:intergenic
TTATTTGCAGTGATAGCAAT+TGG 0.393704 tig0031610:+19122 Msa1447180:three_prime_UTR
ATACCTTGTGAAGGTGAATC+AGG 0.397770 tig0031610:-13400 None:intergenic
GTGAGACTCATTGTTCCTAA+TGG 0.398744 tig0031610:+15609 Msa1447180:CDS
GATGACACGTAAGAAGATTC+AGG 0.399735 tig0031610:-13340 None:intergenic
ACTGCTGCCAGGATAGTAAA+AGG 0.409043 tig0031610:-19052 None:intergenic
AAGATAAGATCTATTGGAAA+TGG 0.409681 tig0031610:+18941 Msa1447180:three_prime_UTR
GATCGGATTATCATGGTATC+TGG 0.414971 tig0031610:+15395 Msa1447180:CDS
TACAGGAAAGTTACCATAAC+GGG 0.415319 tig0031610:+18634 Msa1447180:intron
ATTCCACCACAAGAACCATT+AGG 0.428562 tig0031610:-15624 None:intergenic
AACTTTGCTCCAGTACCATT+AGG 0.429145 tig0031610:-17214 None:intergenic
CTGGTATCAAACTCTGCTGC+TGG 0.438478 tig0031610:+15269 Msa1447180:CDS
GTTACTATGGACAAAATGAT+AGG 0.441534 tig0031610:+16061 Msa1447180:CDS
CGCAATAATGAATTCTTCCC+TGG 0.444645 tig0031610:+15365 Msa1447180:CDS
TTTGTATTTGATTAATCTGA+TGG 0.449904 tig0031610:+19271 Msa1447180:three_prime_UTR
GTTCTTGTGGTGGAATAATT+GGG 0.454264 tig0031610:+15631 Msa1447180:CDS
GCTGGTTCTGTTATTGGAAA+GGG 0.456735 tig0031610:+15287 Msa1447180:CDS
ACATATCTGGAACAACTGAT+AGG 0.462362 tig0031610:+18488 Msa1447180:CDS
TGGTTGTTGGCCGCGGTGGA+AGG 0.467698 tig0031610:+18316 Msa1447180:CDS
CAAAATGGTAGTAAATTCAA+TGG 0.469091 tig0031610:-19252 None:intergenic
GGTGAAGAAGCGTGCTTCCT+CGG 0.469105 tig0031610:-13373 None:intergenic
GGAATTAAGAATTCACTTGT+GGG 0.475476 tig0031610:+19144 Msa1447180:three_prime_UTR
TGCTGGTTCTGTTATTGGAA+AGG 0.479085 tig0031610:+15286 Msa1447180:CDS
AACAAAACGTGACGTTGCGG+TGG 0.480405 tig0031610:+13063 Msa1447180:five_prime_UTR
GGAAGGGAGGTGCTACCATC+AGG 0.484173 tig0031610:+15652 Msa1447180:CDS
TTGGAGATCTTTATTGTAGT+GGG 0.484417 tig0031610:+18850 Msa1447180:three_prime_UTR
TAATCTGATGGCTTGATCAA+TGG 0.485053 tig0031610:+19283 Msa1447180:three_prime_UTR
ATAGGATTGGTTGTTGGCCG+CGG 0.486310 tig0031610:+18309 Msa1447180:CDS
GGAGTGAATTACAGACCTAA+TGG 0.486780 tig0031610:+17199 Msa1447180:CDS
ATAATCCGATCAGTGGTTCC+AGG 0.487212 tig0031610:-15383 None:intergenic
TTTGGAGATCTTTATTGTAG+TGG 0.490259 tig0031610:+18849 Msa1447180:three_prime_UTR
GGGAATTAAGAATTCACTTG+TGG 0.491767 tig0031610:+19143 Msa1447180:three_prime_UTR
TATTTGCAGTGATAGCAATT+GGG 0.497798 tig0031610:+19123 Msa1447180:three_prime_UTR
CATCACAACTTGAGGGTGTA+GGG 0.500965 tig0031610:-19176 None:intergenic
AATTACAGACCTAATGGTAC+TGG 0.501753 tig0031610:+17205 Msa1447180:CDS
AGGAACAATGAGTCTCACTT+TGG 0.502565 tig0031610:-15604 None:intergenic
TAACTCTCCGATCCTATCTC+AGG 0.512910 tig0031610:-19098 None:intergenic
TAATTCACTCCGTTGTATGC+TGG 0.514758 tig0031610:-17187 None:intergenic
ATATGTAAATGGAGAACTCA+TGG 0.515463 tig0031610:-16175 None:intergenic
GGTGTTGCAGATGAGCATAT+AGG 0.530598 tig0031610:+18291 Msa1447180:CDS
AGTAACAGTGACAGGAACTC+TGG 0.531115 tig0031610:+16086 Msa1447180:CDS
GTTCCTAATGGTTCTTGTGG+TGG 0.531212 tig0031610:+15621 Msa1447180:CDS
GAATATATCAGATATTAGTC+AGG 0.536388 tig0031610:+18338 Msa1447180:CDS
GAGCATATAGGATTGGTTGT+TGG 0.541049 tig0031610:+18303 Msa1447180:CDS
GATCTTTATTGTAGTGGGAG+AGG 0.545289 tig0031610:+18855 Msa1447180:three_prime_UTR
TTATTGTAGTGGGAGAGGGC+AGG 0.545988 tig0031610:+18860 Msa1447180:three_prime_UTR
ATCTTTATTGTAGTGGGAGA+GGG 0.546637 tig0031610:+18856 Msa1447180:three_prime_UTR
TGCACACACATCACAACTTG+AGG 0.549233 tig0031610:-19184 None:intergenic
GATAGGATAGTAACAGTGAC+AGG 0.551160 tig0031610:+16078 Msa1447180:CDS
GATATAAGTCAACTGCTGCC+AGG 0.551505 tig0031610:-19063 None:intergenic
AAAATTGTGATTCATTTCAG+TGG 0.553609 tig0031610:+12958 Msa1447180:five_prime_UTR
GCTTATGTCTCGGGTTATCA+GGG 0.556130 tig0031610:+17127 Msa1447180:CDS
AACCACTGATCGGATTATCA+TGG 0.561992 tig0031610:+15388 Msa1447180:CDS
CGAAGCAACTCAATGACCAT+TGG 0.562529 tig0031610:+18270 Msa1447180:CDS
TCTTCCCTGGAACCACTGAT+CGG 0.566105 tig0031610:+15378 Msa1447180:CDS
TGCTTATGCTACCGAGAGAG+TGG 0.567022 tig0031610:+18705 Msa1447180:CDS
ACATCACAACTTGAGGGTGT+AGG 0.569266 tig0031610:-19177 None:intergenic
AATGTATGAGCAGAGCAAGC+AGG 0.570345 tig0031610:-18775 None:intergenic
AGAAGAAGACGTTGGTGCTG+CGG 0.571094 tig0031610:-13115 None:intergenic
ACAAAACGTGACGTTGCGGT+GGG 0.572887 tig0031610:+13064 Msa1447180:five_prime_UTR
GGTTCTGTTATTGGAAAGGG+TGG 0.573790 tig0031610:+15290 Msa1447180:CDS
TGCAGATGAGCATATAGGAT+TGG 0.578537 tig0031610:+18296 Msa1447180:CDS
GGATTGGTTGTTGGCCGCGG+TGG 0.579630 tig0031610:+18312 Msa1447180:CDS
TTCATTGAAGAATCTCAAGC+TGG 0.580937 tig0031610:+16012 Msa1447180:CDS
TATGCTGGTGGTGCAACAGA+TGG 0.582226 tig0031610:-17172 None:intergenic
TGTGGTGGAATAATTGGGAA+GGG 0.585404 tig0031610:+15636 Msa1447180:CDS
TTGTGGTGGAATAATTGGGA+AGG 0.587577 tig0031610:+15635 Msa1447180:CDS
GAGAAGAAATCCTGTAAGAA+CGG 0.588543 tig0031610:-18906 None:intergenic
CCATAGTAACTATTATCTTG+AGG 0.592910 tig0031610:-16048 None:intergenic
ATGCTCATCTGCAACACCAA+TGG 0.602648 tig0031610:-18286 None:intergenic
GCACACACATCACAACTTGA+GGG 0.603795 tig0031610:-19183 None:intergenic
GAGATAGATATACCTTGTGA+AGG 0.605051 tig0031610:-13409 None:intergenic
ATTCTGCTGCGTTGTGTGTG+AGG 0.610881 tig0031610:-13021 None:intergenic
AAATTACTACTCCACTCTCT+CGG 0.611185 tig0031610:-18716 None:intergenic
TGTGAAGGTGAATCAGGAGG+AGG 0.613856 tig0031610:-13394 None:intergenic
ATTGTTCCTAATGGTTCTTG+TGG 0.614655 tig0031610:+15618 Msa1447180:CDS
TAATCCGATCAGTGGTTCCA+GGG 0.614702 tig0031610:-15382 None:intergenic
TTCACTCCGTTGTATGCTGG+TGG 0.615585 tig0031610:-17184 None:intergenic
ATACAGGAAAGTTACCATAA+CGG 0.616164 tig0031610:+18633 Msa1447180:intron
TGAATCTATGATACTGCAGA+AGG 0.623036 tig0031610:+18681 Msa1447180:CDS
TACCATGATAATCCGATCAG+TGG 0.623671 tig0031610:-15390 None:intergenic
ACTCTGGATGAGCAGATGCG+TGG 0.628470 tig0031610:+16102 Msa1447180:CDS
ATATGATTAGCTTCACGGCG+AGG 0.636503 tig0031610:+15557 Msa1447180:intron
CTCATGGAATGTGAATAATG+AGG 0.636799 tig0031610:-16159 None:intergenic
ATCGCAGAGAGCAATTCGTA+CGG 0.639819 tig0031610:+18657 Msa1447180:CDS
GGTGGAATAATTGGGAAGGG+AGG 0.640620 tig0031610:+15639 Msa1447180:CDS
CAAAACAAAACGTGACGTTG+CGG 0.645823 tig0031610:+13060 Msa1447180:five_prime_UTR
AAGAGAAGAGAAGAAGACGT+TGG 0.647793 tig0031610:-13123 None:intergenic
TCGTCGCTGAAGAACAACAA+TGG 0.647980 tig0031610:+13312 Msa1447180:exon
CCTCCTGATTCACCTTCACA+AGG 0.648979 tig0031610:+13397 Msa1447180:CDS
AGCAAAGTTCCAGAACAGCA+AGG 0.651421 tig0031610:+17228 Msa1447180:CDS
ACCAGAAACCTAACATACGT+TGG 0.662582 tig0031610:-15251 None:intergenic
TCTTTCAAAGTTGCTCAGTG+AGG 0.665119 tig0031610:+15454 Msa1447180:CDS
TTACTGGCCTGAGATAGGAT+CGG 0.673397 tig0031610:+19091 Msa1447180:three_prime_UTR
CCTTGTGAAGGTGAATCAGG+AGG 0.679544 tig0031610:-13397 None:intergenic
AAGATAAAGATATCAGACAG+AGG 0.683928 tig0031610:+18460 Msa1447180:CDS
AATGGTTAGAACTAGAAGTG+TGG 0.684968 tig0031610:+19301 Msa1447180:three_prime_UTR
TCTTACGTGTCATCTCCAGA+AGG 0.691710 tig0031610:+13349 Msa1447180:CDS
TGTCATCTCCAGAAGGACCG+AGG 0.694724 tig0031610:+13356 Msa1447180:CDS
GTTGCACCACCAGCATACAA+CGG 0.711710 tig0031610:+17178 Msa1447180:CDS
CTGATATATTCCTTCCACCG+CGG 0.760447 tig0031610:-18326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTTCAATTCTAATT+TGG - tig0031610:13967-13986 None:intergenic 10.0%
!!! AATTTTAAGAATGTTTTTTT+AGG + tig0031610:14485-14504 Msa1447180:intron 10.0%
!!! CATTTATTTTTAAAATATGA+GGG + tig0031610:16987-17006 Msa1447180:intron 10.0%
!!! AGTTTATTTTTTATTCTAAA+GGG + tig0031610:17434-17453 Msa1447180:intron 10.0%
!!! CTAACAAATAATTTTTAAAT+TGG + tig0031610:17810-17829 Msa1447180:intron 10.0%
!! TATATAAGTATATAAATCAT+AGG - tig0031610:18122-18141 None:intergenic 10.0%
!!! TTGTTTGAAATTATCAAATT+TGG + tig0031610:14274-14293 Msa1447180:intron 15.0%
!!! ATTTGTTTTGTTTTGTTTTA+TGG + tig0031610:14424-14443 Msa1447180:intron 15.0%
!!! TTTGTTTTGTTTTGTTTTAT+GGG + tig0031610:14425-14444 Msa1447180:intron 15.0%
!!! TTAATATTTTTTTTCTCCAA+TGG + tig0031610:14750-14769 Msa1447180:intron 15.0%
!! AAAATTAAATAATGCTGAAT+CGG + tig0031610:14823-14842 Msa1447180:intron 15.0%
!!! TGAAATTTTAAGTTTTATGT+CGG + tig0031610:14980-14999 Msa1447180:intron 15.0%
!! AATTTCATAAATATGGTAAA+CGG - tig0031610:15714-15733 None:intergenic 15.0%
!! TATTATTTACTTATACATCA+GGG + tig0031610:16536-16555 Msa1447180:intron 15.0%
!!! ATTTGAATTTTAGGAATAAT+AGG + tig0031610:16778-16797 Msa1447180:intron 15.0%
!!! GCATTTATTTTTAAAATATG+AGG + tig0031610:16986-17005 Msa1447180:intron 15.0%
!!! CAGTTTATTTTTTATTCTAA+AGG + tig0031610:17433-17452 Msa1447180:intron 15.0%
!!! GTTTATTTTTTATTCTAAAG+GGG + tig0031610:17435-17454 Msa1447180:intron 15.0%
!!! AAAATTATTTGTTAGTGTTA+GGG - tig0031610:17805-17824 None:intergenic 15.0%
!!! AAAAATTATTTGTTAGTGTT+AGG - tig0031610:17806-17825 None:intergenic 15.0%
!!! AGTTTTTCTTACTATATTTT+AGG + tig0031610:17918-17937 Msa1447180:intron 15.0%
!!! GTTTTTCTTACTATATTTTA+GGG + tig0031610:17919-17938 Msa1447180:intron 15.0%
!! AAATTGTAAAACAACAAAAT+AGG - tig0031610:17974-17993 None:intergenic 15.0%
!!! TTTTTTTATCCTGTTTCTTA+CGG + tig0031610:13773-13792 Msa1447180:intron 20.0%
!!! GATTTTATTTTGTGAAAGAT+TGG + tig0031610:13892-13911 Msa1447180:intron 20.0%
!! TATTTAACAACATGGATAAT+CGG - tig0031610:14572-14591 None:intergenic 20.0%
!! TATCCATGTTGTTAAATAAT+TGG + tig0031610:14574-14593 Msa1447180:intron 20.0%
!! AACTAATTGAATCAATATCA+TGG - tig0031610:15486-15505 None:intergenic 20.0%
!! ATTTCATAAATATGGTAAAC+GGG - tig0031610:15713-15732 None:intergenic 20.0%
!! CAGTACTAATTTCATAAATA+TGG - tig0031610:15721-15740 None:intergenic 20.0%
!!! TTTTTAATGTTATTCAGAGA+TGG + tig0031610:15944-15963 Msa1447180:intron 20.0%
!!! TTTTAATGTTATTCAGAGAT+GGG + tig0031610:15945-15964 Msa1447180:intron 20.0%
!! GTATTATTTACTTATACATC+AGG + tig0031610:16535-16554 Msa1447180:intron 20.0%
!! AAGGTAAAATATGATTAAGA+TGG + tig0031610:16645-16664 Msa1447180:intron 20.0%
!!! CTTAATGTCATTTGAATTTT+AGG + tig0031610:16769-16788 Msa1447180:intron 20.0%
!!! AACTTTTTAACATGCATTTT+AGG + tig0031610:17103-17122 Msa1447180:intron 20.0%
!! CATTAACAAGATTAAATTGA+TGG - tig0031610:17265-17284 None:intergenic 20.0%
!! CATCAATTTAATCTTGTTAA+TGG + tig0031610:17263-17282 Msa1447180:intron 20.0%
!! GTATTATGCAAATATTTCAA+AGG - tig0031610:17721-17740 None:intergenic 20.0%
!!! ATAGATCTTATCTTTTGAAT+GGG - tig0031610:18935-18954 None:intergenic 20.0%
!!! AATAGATCTTATCTTTTGAA+TGG - tig0031610:18936-18955 None:intergenic 20.0%
!! ATTCAAAAGATAAGATCTAT+TGG + tig0031610:18935-18954 Msa1447180:three_prime_UTR 20.0%
!!! ATAGTTCTAAATACTACATT+TGG - tig0031610:18980-18999 None:intergenic 20.0%
!! CAGATTAATCAAATACAAAA+TGG - tig0031610:19270-19289 None:intergenic 20.0%
!! TTTGTATTTGATTAATCTGA+TGG + tig0031610:19271-19290 Msa1447180:three_prime_UTR 20.0%
! AAAATTGTGATTCATTTCAG+TGG + tig0031610:12958-12977 Msa1447180:five_prime_UTR 25.0%
! AGTGAGAAAAAAAGTGAATA+CGG - tig0031610:13161-13180 None:intergenic 25.0%
! GAAAGAAACAAAAATCACAT+CGG - tig0031610:13589-13608 None:intergenic 25.0%
! ATCCTTCACATCAATTAATT+TGG - tig0031610:13732-13751 None:intergenic 25.0%
!!! TTTGTTTTTTCTGTTGAGTT+TGG + tig0031610:13800-13819 Msa1447180:intron 25.0%
!! TCTTTGATGGAAAGTTTTTA+AGG + tig0031610:14016-14035 Msa1447180:intron 25.0%
! ATATTGAAGGGAAGAATAAT+CGG + tig0031610:14182-14201 Msa1447180:intron 25.0%
! CACATTTGTGTGATTAATTT+AGG + tig0031610:14349-14368 Msa1447180:intron 25.0%
! GTACCAATTATTTAACAACA+TGG - tig0031610:14580-14599 None:intergenic 25.0%
!!! ATGATAGTTTTAATGTCCAT+TGG - tig0031610:14769-14788 None:intergenic 25.0%
!! ATCAGTAGTGTTATTAATAG+CGG - tig0031610:15158-15177 None:intergenic 25.0%
! ATAAAAAATGTCTTGCATTG+CGG + tig0031610:15512-15531 Msa1447180:intron 25.0%
!!! ATTTTCTTTGTCAAGTTGTA+GGG + tig0031610:15683-15702 Msa1447180:intron 25.0%
!!! GAATATGTTTTGATTTCAAG+AGG + tig0031610:15786-15805 Msa1447180:intron 25.0%
!!! TATGCTTATTTTTAGTTGCA+GGG - tig0031610:15877-15896 None:intergenic 25.0%
!!! ATATGCTTATTTTTAGTTGC+AGG - tig0031610:15878-15897 None:intergenic 25.0%
! AATAAGCATATGTTATTGTC+AGG + tig0031610:15887-15906 Msa1447180:intron 25.0%
! TTTAATGTTATTCAGAGATG+GGG + tig0031610:15946-15965 Msa1447180:intron 25.0%
! TCAAAGGCAAAAAATTCATA+AGG - tig0031610:15984-16003 None:intergenic 25.0%
! AGCTAAACTAACAATATGTT+GGG - tig0031610:16441-16460 None:intergenic 25.0%
! AAGCTAAACTAACAATATGT+TGG - tig0031610:16442-16461 None:intergenic 25.0%
! AAATGTATTCTATGAATCAC+GGG - tig0031610:16694-16713 None:intergenic 25.0%
! GAAATGTATTCTATGAATCA+CGG - tig0031610:16695-16714 None:intergenic 25.0%
!!! ATTTTGGTATTACGCTAAAA+AGG + tig0031610:16907-16926 Msa1447180:intron 25.0%
!! TACAGCAATTTACTCATTTT+TGG + tig0031610:16961-16980 Msa1447180:intron 25.0%
!!! ACAGCAATTTACTCATTTTT+GGG + tig0031610:16962-16981 Msa1447180:intron 25.0%
!! TTTTTATGGTAGTAAAGTGA+TGG + tig0031610:17019-17038 Msa1447180:intron 25.0%
!! TTATCATGTTTTGTCTTGTA+TGG + tig0031610:17052-17071 Msa1447180:intron 25.0%
! AAGATTAAATTGATGGAATG+AGG - tig0031610:17258-17277 None:intergenic 25.0%
! TTATTAAGTAGCAATGACTA+AGG - tig0031610:17363-17382 None:intergenic 25.0%
!! TGATTCTAGAAAACAAAATG+TGG + tig0031610:17476-17495 Msa1447180:intron 25.0%
! GCAATATCTAATTAGCTAAA+AGG + tig0031610:17568-17587 Msa1447180:intron 25.0%
! AGAAATTATTAGTGATGAAC+AGG - tig0031610:17620-17639 None:intergenic 25.0%
! CTAATAATTTCTGACATGAA+TGG + tig0031610:17628-17647 Msa1447180:intron 25.0%
!! TTTTTAAATTGGTGTAACTG+TGG + tig0031610:17821-17840 Msa1447180:intron 25.0%
! TTGTAAAACAACAAAATAGG+TGG - tig0031610:17971-17990 None:intergenic 25.0%
! ACTTATATGTCTATTACCAA+TGG + tig0031610:18027-18046 Msa1447180:intron 25.0%
! TTATTCACTAAATTCACCAT+TGG - tig0031610:18046-18065 None:intergenic 25.0%
! TAGGAAATTATTATTACACG+AGG - tig0031610:18103-18122 None:intergenic 25.0%
! TTCATTCATAAATTCGACAT+TGG - tig0031610:18152-18171 None:intergenic 25.0%
! GAATATATCAGATATTAGTC+AGG + tig0031610:18338-18357 Msa1447180:CDS 25.0%
!!! ATTTGATAGCAGATGTTTTA+CGG + tig0031610:18591-18610 Msa1447180:intron 25.0%
! TTTCTATTTCCATGTTATAC+AGG + tig0031610:18617-18636 Msa1447180:intron 25.0%
!!! TCATACATTTGCTGAATTTT+GGG + tig0031610:18789-18808 Msa1447180:three_prime_UTR 25.0%
! AAGATAAGATCTATTGGAAA+TGG + tig0031610:18941-18960 Msa1447180:three_prime_UTR 25.0%
! TGACTTATATCTTCAATTAC+TGG + tig0031610:19075-19094 Msa1447180:three_prime_UTR 25.0%
!!! GCATGTTATTTCATGTTTAT+TGG + tig0031610:19204-19223 Msa1447180:three_prime_UTR 25.0%
! CAAAATGGTAGTAAATTCAA+TGG - tig0031610:19255-19274 None:intergenic 25.0%
AGCCAAATTAATTGATGTGA+AGG + tig0031610:13727-13746 Msa1447180:intron 30.0%
TGAACACAAATCAATGCTTA+TGG - tig0031610:13826-13845 None:intergenic 30.0%
GTGAAAGATTGGAGTTAATT+TGG + tig0031610:13903-13922 Msa1447180:intron 30.0%
! ACTGCAACTTTTATCTTTGA+TGG + tig0031610:14003-14022 Msa1447180:intron 30.0%
!!! TTTTAAGGTTTAATCCCGTA+TGG + tig0031610:14031-14050 Msa1447180:intron 30.0%
TGCGCTAAATAAATACCATA+CGG - tig0031610:14049-14068 None:intergenic 30.0%
GTATTTATTTAGCGCATGTT+TGG + tig0031610:14053-14072 Msa1447180:intron 30.0%
!!! TGCGATTTTATTTTTCGTAG+TGG + tig0031610:14159-14178 Msa1447180:intron 30.0%
!!! TTTTTCGTAGTGGATATTGA+AGG + tig0031610:14169-14188 Msa1447180:intron 30.0%
!!! TTTTCGTAGTGGATATTGAA+GGG + tig0031610:14170-14189 Msa1447180:intron 30.0%
! ATTATATCACTGCATTTTCC+AGG - tig0031610:14468-14487 None:intergenic 30.0%
TATGAAGTGAAAAGAGAAAG+TGG - tig0031610:14928-14947 None:intergenic 30.0%
! TCTTTATTTCAACTGCTTTG+TGG + tig0031610:15058-15077 Msa1447180:intron 30.0%
TAAAAAATGTCTTGCATTGC+GGG + tig0031610:15513-15532 Msa1447180:intron 30.0%
!! GCTTTATATGATTAGCTTCA+CGG + tig0031610:15552-15571 Msa1447180:intron 30.0%
AGAAAATGAATTGTACCTGA+TGG - tig0031610:15670-15689 None:intergenic 30.0%
!! CATTTTCTTTGTCAAGTTGT+AGG + tig0031610:15682-15701 Msa1447180:intron 30.0%
!!! ATGCCTTTTGATTTGTGTTT+TGG + tig0031610:15763-15782 Msa1447180:intron 30.0%
!!! TGCCTTTTGATTTGTGTTTT+GGG + tig0031610:15764-15783 Msa1447180:intron 30.0%
TTCCCAAAACACAAATCAAA+AGG - tig0031610:15769-15788 None:intergenic 30.0%
!! TTATATGAATGCTGGTTCTT+CGG + tig0031610:15816-15835 Msa1447180:intron 30.0%
!!! ATGCTTATTTTTAGTTGCAG+GGG - tig0031610:15876-15895 None:intergenic 30.0%
TTAATGTTATTCAGAGATGG+GGG + tig0031610:15947-15966 Msa1447180:intron 30.0%
!!! TGAATTTTTTGCCTTTGATC+AGG + tig0031610:15986-16005 Msa1447180:intron 30.0%
CCATAGTAACTATTATCTTG+AGG - tig0031610:16051-16070 None:intergenic 30.0%
CCTCAAGATAATAGTTACTA+TGG + tig0031610:16048-16067 Msa1447180:CDS 30.0%
GTTACTATGGACAAAATGAT+AGG + tig0031610:16061-16080 Msa1447180:CDS 30.0%
ATATGTAAATGGAGAACTCA+TGG - tig0031610:16178-16197 None:intergenic 30.0%
AGTTCTCCATTTACATATTC+TGG + tig0031610:16180-16199 Msa1447180:CDS 30.0%
!! AGTGTCATTTATTTGTTCCA+CGG + tig0031610:16205-16224 Msa1447180:intron 30.0%
TCGCCAATACTTATATACTT+TGG + tig0031610:16253-16272 Msa1447180:intron 30.0%
GCTCCAAAGTATATAAGTAT+TGG - tig0031610:16259-16278 None:intergenic 30.0%
! TTGCTTTCTTTTTAATGAGC+CGG + tig0031610:16489-16508 Msa1447180:intron 30.0%
TCTTGTAAGTATTCCTTATC+TGG - tig0031610:16725-16744 None:intergenic 30.0%
!! TTTTAGGAATAATAGGTGCA+AGG + tig0031610:16785-16804 Msa1447180:intron 30.0%
!! TTGTTCTGAAAGAGTAATAG+TGG + tig0031610:16856-16875 Msa1447180:intron 30.0%
!!! GAGGGTATTGTCTATTTTTA+TGG + tig0031610:17005-17024 Msa1447180:intron 30.0%
ATGAATGGATACTAACATGT+TGG + tig0031610:17643-17662 Msa1447180:intron 30.0%
ATACTAACATGTTGGATGAT+TGG + tig0031610:17651-17670 Msa1447180:intron 30.0%
! CATAGATACGATGGTTTTTA+AGG + tig0031610:17688-17707 Msa1447180:intron 30.0%
TTATACCATGCAAAACCATT+AGG - tig0031610:18379-18398 None:intergenic 30.0%
AAGATAAAGATATCAGACAG+AGG + tig0031610:18460-18479 Msa1447180:CDS 30.0%
TTATGCAAGAATTTGATTGC+TGG - tig0031610:18568-18587 None:intergenic 30.0%
!! TTTGATAGCAGATGTTTTAC+GGG + tig0031610:18592-18611 Msa1447180:intron 30.0%
ATACAGGAAAGTTACCATAA+CGG + tig0031610:18633-18652 Msa1447180:intron 30.0%
!! CTCATACATTTGCTGAATTT+TGG + tig0031610:18788-18807 Msa1447180:three_prime_UTR 30.0%
!! TCTGTCACTTGATATACTTT+TGG + tig0031610:18831-18850 Msa1447180:three_prime_UTR 30.0%
TTTGGAGATCTTTATTGTAG+TGG + tig0031610:18849-18868 Msa1447180:three_prime_UTR 30.0%
TTGGAGATCTTTATTGTAGT+GGG + tig0031610:18850-18869 Msa1447180:three_prime_UTR 30.0%
TTATTTGCAGTGATAGCAAT+TGG + tig0031610:19122-19141 Msa1447180:three_prime_UTR 30.0%
TATTTGCAGTGATAGCAATT+GGG + tig0031610:19123-19142 Msa1447180:three_prime_UTR 30.0%
GGAATTAAGAATTCACTTGT+GGG + tig0031610:19144-19163 Msa1447180:three_prime_UTR 30.0%
GTTGTCAACTTGTCATTATT+TGG + tig0031610:19226-19245 Msa1447180:three_prime_UTR 30.0%
GAGAAAAAAAGTGAATACGG+CGG - tig0031610:13158-13177 None:intergenic 35.0%
AGAGAGTTACATAGCAGTAA+TGG - tig0031610:13198-13217 None:intergenic 35.0%
GAGATAGATATACCTTGTGA+AGG - tig0031610:13412-13431 None:intergenic 35.0%
AGAGAGAAAACAGATCAGAT+CGG - tig0031610:13437-13456 None:intergenic 35.0%
TCTCTCTCTGTAATGTACAT+AGG + tig0031610:13450-13469 Msa1447180:intron 35.0%
! GCGAGCATTGTAAAGAATTA+GGG - tig0031610:13495-13514 None:intergenic 35.0%
AAAAATCACATCGGCATAAC+AGG - tig0031610:13580-13599 None:intergenic 35.0%
! TTTTCAACGTGTAACCAAAC+AGG + tig0031610:13849-13868 Msa1447180:intron 35.0%
TTTCAACGTGTAACCAAACA+GGG + tig0031610:13850-13869 Msa1447180:intron 35.0%
ATTAAACCTAAGTCCCTGTT+TGG - tig0031610:13866-13885 None:intergenic 35.0%
AAACAGGGACTTAGGTTTAA+TGG + tig0031610:13865-13884 Msa1447180:intron 35.0%
GCGCTAAATAAATACCATAC+GGG - tig0031610:14048-14067 None:intergenic 35.0%
! TAAGCTTTTGTGTTAGTGAG+AGG + tig0031610:14305-14324 Msa1447180:intron 35.0%
GATACATAATAGCGGTATAG+CGG - tig0031610:14607-14626 None:intergenic 35.0%
GCTATACCGCTATTATGTAT+CGG + tig0031610:14606-14625 Msa1447180:intron 35.0%
CTATACCGCTATTATGTATC+GGG + tig0031610:14607-14626 Msa1447180:intron 35.0%
GAAATCCCGATACATAATAG+CGG - tig0031610:14615-14634 None:intergenic 35.0%
! TTTTTGCATATCGGAGATAG+CGG + tig0031610:14697-14716 Msa1447180:intron 35.0%
TTTCACTTTACCTAGGTCTT+GGG - tig0031610:14874-14893 None:intergenic 35.0%
! TTTTCACTTTACCTAGGTCT+TGG - tig0031610:14875-14894 None:intergenic 35.0%
!! AAAGAGTTTTAGTGATCGAG+AGG - tig0031610:14898-14917 None:intergenic 35.0%
!!! TATTTCCCATAGCGGATTTT+TGG + tig0031610:15111-15130 Msa1447180:intron 35.0%
TAGAAAAGCCAACGTATGTT+AGG + tig0031610:15243-15262 Msa1447180:CDS 35.0%
!! ACTGATTTTCAGTCACAATC+TGG + tig0031610:15323-15342 Msa1447180:CDS 35.0%
ATTCATTATTGCGTGACAAC+TGG - tig0031610:15358-15377 None:intergenic 35.0%
!!! ATGAGTCTCACTTTGGTTTT+TGG - tig0031610:15600-15619 None:intergenic 35.0%
ATTGTTCCTAATGGTTCTTG+TGG + tig0031610:15618-15637 Msa1447180:CDS 35.0%
! GTTCTTGTGGTGGAATAATT+GGG + tig0031610:15631-15650 Msa1447180:CDS 35.0%
GTTGTCTCTTATATGAATGC+TGG + tig0031610:15808-15827 Msa1447180:intron 35.0%
! TCAGAGCTTTTATATCCCTA+TGG + tig0031610:15841-15860 Msa1447180:intron 35.0%
ATGCGATGAAAAATAACAGC+CGG - tig0031610:15913-15932 None:intergenic 35.0%
TCAATGAATGACCTGATCAA+AGG - tig0031610:16000-16019 None:intergenic 35.0%
TTCATTGAAGAATCTCAAGC+TGG + tig0031610:16012-16031 Msa1447180:CDS 35.0%
CTCATGGAATGTGAATAATG+AGG - tig0031610:16162-16181 None:intergenic 35.0%
CACTGACCAGAATATGTAAA+TGG - tig0031610:16189-16208 None:intergenic 35.0%
AATGTACAAGAGATATTCCG+TGG - tig0031610:16225-16244 None:intergenic 35.0%
!! ATACTTTGGAGCACCTAATA+TGG + tig0031610:16267-16286 Msa1447180:intron 35.0%
! TGCTTTCTTTTTAATGAGCC+GGG + tig0031610:16490-16509 Msa1447180:intron 35.0%
CAATCAGAAGAAAGACAGAT+GGG - tig0031610:16516-16535 None:intergenic 35.0%
ACAATCAGAAGAAAGACAGA+TGG - tig0031610:16517-16536 None:intergenic 35.0%
TTATACATCAGGGACAGTAA+TGG + tig0031610:16546-16565 Msa1447180:intron 35.0%
! CATTTCGTTTTCACCAGATA+AGG + tig0031610:16709-16728 Msa1447180:intron 35.0%
TACTCTTTCAGAACAACAAC+CGG - tig0031610:16852-16871 None:intergenic 35.0%
CTGAAAGAGTAATAGTGGTA+AGG + tig0031610:16861-16880 Msa1447180:intron 35.0%
!! TCTTGGTGATAGTGTGATTT+TGG + tig0031610:16891-16910 Msa1447180:intron 35.0%
!! CATTTTAGGTGCTTATGTCT+CGG + tig0031610:17117-17136 Msa1447180:intron 35.0%
!! ATTTTAGGTGCTTATGTCTC+GGG + tig0031610:17118-17137 Msa1447180:intron 35.0%
! GATGGAAGCACATATGTATA+TGG - tig0031610:17157-17176 None:intergenic 35.0%
AATTACAGACCTAATGGTAC+TGG + tig0031610:17205-17224 Msa1447180:CDS 35.0%
AGTGTTCACAGAACTTCATA+TGG + tig0031610:17528-17547 Msa1447180:intron 35.0%
TAACATGTTGGATGATTGGA+AGG + tig0031610:17655-17674 Msa1447180:intron 35.0%
TAGGGATCTGTTACTACATT+TGG + tig0031610:17937-17956 Msa1447180:intron 35.0%
TATCAGATATTAGTCAGGTC+AGG + tig0031610:18343-18362 Msa1447180:intron 35.0%
! TTTTTGCTCTTTCAGACTAG+TGG + tig0031610:18433-18452 Msa1447180:intron 35.0%
! ACATATCTGGAACAACTGAT+AGG + tig0031610:18488-18507 Msa1447180:CDS 35.0%
TCGTTATACTTGAGGGATAA+GGG - tig0031610:18542-18561 None:intergenic 35.0%
TTCGTTATACTTGAGGGATA+AGG - tig0031610:18543-18562 None:intergenic 35.0%
GGTAACTTTCCTGTATAACA+TGG - tig0031610:18629-18648 None:intergenic 35.0%
TACAGGAAAGTTACCATAAC+GGG + tig0031610:18634-18653 Msa1447180:intron 35.0%
TGAATCTATGATACTGCAGA+AGG + tig0031610:18681-18700 Msa1447180:CDS 35.0%
AAATTACTACTCCACTCTCT+CGG - tig0031610:18719-18738 None:intergenic 35.0%
CTTGTCTACTGTTAGATTCT+TGG + tig0031610:18748-18767 Msa1447180:three_prime_UTR 35.0%
! ATCTTTATTGTAGTGGGAGA+GGG + tig0031610:18856-18875 Msa1447180:three_prime_UTR 35.0%
GAGAAGAAATCCTGTAAGAA+CGG - tig0031610:18909-18928 None:intergenic 35.0%
GGGAATTAAGAATTCACTTG+TGG + tig0031610:19143-19162 Msa1447180:three_prime_UTR 35.0%
TAATCTGATGGCTTGATCAA+TGG + tig0031610:19283-19302 Msa1447180:three_prime_UTR 35.0%
CAAAACAAAACGTGACGTTG+CGG + tig0031610:13060-13079 Msa1447180:five_prime_UTR 40.0%
AAGAGAAGAGAAGAAGACGT+TGG - tig0031610:13126-13145 None:intergenic 40.0%
!! TTTCTCTCTCTCTGAAACGA+AGG + tig0031610:13251-13270 Msa1447180:intron 40.0%
GAAACGAAGGAGTGAGAATT+AGG + tig0031610:13264-13283 Msa1447180:intron 40.0%
GATGACACGTAAGAAGATTC+AGG - tig0031610:13343-13362 None:intergenic 40.0%
ATACCTTGTGAAGGTGAATC+AGG - tig0031610:13403-13422 None:intergenic 40.0%
! CGCGAGCATTGTAAAGAATT+AGG - tig0031610:13496-13515 None:intergenic 40.0%
! TTGGTATCACAGTGAGTTGA+CGG + tig0031610:14072-14091 Msa1447180:intron 40.0%
CACAAATGTGTGAAGTGTGA+AGG - tig0031610:14339-14358 None:intergenic 40.0%
!!! TTGTCGTTTTCTTGCTTGCT+AGG + tig0031610:14375-14394 Msa1447180:intron 40.0%
! GTACAAAAGTACGTTGTTCC+TGG + tig0031610:14447-14466 Msa1447180:intron 40.0%
ACATGGATAATCGGTGTAGT+TGG - tig0031610:14563-14582 None:intergenic 40.0%
GCAAGATCACAATACCGTAT+GGG - tig0031610:14656-14675 None:intergenic 40.0%
AGCAAGATCACAATACCGTA+TGG - tig0031610:14657-14676 None:intergenic 40.0%
! AGCCGTGGATTTTTGCATAT+CGG + tig0031610:14688-14707 Msa1447180:intron 40.0%
CTCCGATATGCAAAAATCCA+CGG - tig0031610:14693-14712 None:intergenic 40.0%
AGCGGTTATTGCTTACATAG+CGG + tig0031610:14715-14734 Msa1447180:intron 40.0%
TTCACTTTACCTAGGTCTTG+GGG - tig0031610:14873-14892 None:intergenic 40.0%
! GAGAGGTTTTCACTTTACCT+AGG - tig0031610:14881-14900 None:intergenic 40.0%
AGTGAAAAGAGAAAGTGGAG+AGG - tig0031610:14923-14942 None:intergenic 40.0%
AAATCCGCTATGGGAAATAG+CGG - tig0031610:15110-15129 None:intergenic 40.0%
GATCACCAAAAATCCGCTAT+GGG - tig0031610:15119-15138 None:intergenic 40.0%
! TAGCGGATCGTGGAAAATAT+CGG - tig0031610:15141-15160 None:intergenic 40.0%
!! GTGTTATTAATAGCGGATCG+TGG - tig0031610:15151-15170 None:intergenic 40.0%
ACCAGAAACCTAACATACGT+TGG - tig0031610:15254-15273 None:intergenic 40.0%
!! TGCTGGTTCTGTTATTGGAA+AGG + tig0031610:15286-15305 Msa1447180:CDS 40.0%
!! GCTGGTTCTGTTATTGGAAA+GGG + tig0031610:15287-15306 Msa1447180:CDS 40.0%
CGCAATAATGAATTCTTCCC+TGG + tig0031610:15365-15384 Msa1447180:CDS 40.0%
AACCACTGATCGGATTATCA+TGG + tig0031610:15388-15407 Msa1447180:CDS 40.0%
TACCATGATAATCCGATCAG+TGG - tig0031610:15393-15412 None:intergenic 40.0%
GATCGGATTATCATGGTATC+TGG + tig0031610:15395-15414 Msa1447180:CDS 40.0%
TCTTTCAAAGTTGCTCAGTG+AGG + tig0031610:15454-15473 Msa1447180:CDS 40.0%
AGGAACAATGAGTCTCACTT+TGG - tig0031610:15607-15626 None:intergenic 40.0%
GTGAGACTCATTGTTCCTAA+TGG + tig0031610:15609-15628 Msa1447180:CDS 40.0%
ATTCCACCACAAGAACCATT+AGG - tig0031610:15627-15646 None:intergenic 40.0%
! GGTTCTTGTGGTGGAATAAT+TGG + tig0031610:15630-15649 Msa1447180:CDS 40.0%
! TTGTGGTGGAATAATTGGGA+AGG + tig0031610:15635-15654 Msa1447180:CDS 40.0%
! TGTGGTGGAATAATTGGGAA+GGG + tig0031610:15636-15655 Msa1447180:CDS 40.0%
AGCATATGTTATTGTCAGGC+CGG + tig0031610:15891-15910 Msa1447180:intron 40.0%
GATAGGATAGTAACAGTGAC+AGG + tig0031610:16078-16097 Msa1447180:CDS 40.0%
TACATAAACAGGGCTAATGG+AGG - tig0031610:16336-16355 None:intergenic 40.0%
CCATACATAAACAGGGCTAA+TGG - tig0031610:16339-16358 None:intergenic 40.0%
CCATTAGCCCTGTTTATGTA+TGG + tig0031610:16336-16355 Msa1447180:intron 40.0%
AAAGAAGACTGTAATCCCAG+GGG - tig0031610:16363-16382 None:intergenic 40.0%
GAAAGAAGACTGTAATCCCA+GGG - tig0031610:16364-16383 None:intergenic 40.0%
TGAAAGAAGACTGTAATCCC+AGG - tig0031610:16365-16384 None:intergenic 40.0%
TACCTTCACAGAGATACACA+CGG - tig0031610:16631-16650 None:intergenic 40.0%
!! AATCACGGGTGTTACTCAAA+TGG - tig0031610:16680-16699 None:intergenic 40.0%
AGTGGTAAGGATCATACTCT+TGG + tig0031610:16874-16893 Msa1447180:intron 40.0%
GTATTACGCTAAAAAGGTCG+AGG + tig0031610:16913-16932 Msa1447180:intron 40.0%
TCGAGGCCCAATACTAATTA+TGG + tig0031610:16930-16949 Msa1447180:intron 40.0%
TAATTCACTCCGTTGTATGC+TGG - tig0031610:17190-17209 None:intergenic 40.0%
GGAGTGAATTACAGACCTAA+TGG + tig0031610:17199-17218 Msa1447180:CDS 40.0%
AACTTTGCTCCAGTACCATT+AGG - tig0031610:17217-17236 None:intergenic 40.0%
TGTGTGTGTGTTTGAAAGCT+TGG - tig0031610:17308-17327 None:intergenic 40.0%
TAAAGGGGAATGTAGAGACA+GGG + tig0031610:17450-17469 Msa1447180:intron 40.0%
! AGGTTGCCAGTTTGTGTTTT+TGG + tig0031610:17588-17607 Msa1447180:intron 40.0%
CATGTGCCAAAAACACAAAC+TGG - tig0031610:17597-17616 None:intergenic 40.0%
TGTTGGATGATTGGAAGGAA+AGG + tig0031610:17660-17679 Msa1447180:intron 40.0%
AAGGTGATGCATAGATACGA+TGG + tig0031610:17679-17698 Msa1447180:intron 40.0%
TTAGGGCAAGCAACATTACA+AGG - tig0031610:17788-17807 None:intergenic 40.0%
CTCTTGACATTTCACATGAC+AGG + tig0031610:17862-17881 Msa1447180:intron 40.0%
CTGATATATTTGACCTGTGC+TGG + tig0031610:17885-17904 Msa1447180:intron 40.0%
ACTAAATCTTGAACCAGCAC+AGG - tig0031610:17901-17920 None:intergenic 40.0%
TATTATTACACGAGGACGCA+TGG - tig0031610:18095-18114 None:intergenic 40.0%
ATTCATGCATCCACGTGTAA+TGG + tig0031610:18193-18212 Msa1447180:intron 40.0%
! CATATCCTTTGTTGTCTTCC+AGG + tig0031610:18242-18261 Msa1447180:intron 40.0%
TGCAGATGAGCATATAGGAT+TGG + tig0031610:18296-18315 Msa1447180:CDS 40.0%
!! GAGCATATAGGATTGGTTGT+TGG + tig0031610:18303-18322 Msa1447180:CDS 40.0%
TCAGGTTTACCAATGCCTAA+TGG + tig0031610:18361-18380 Msa1447180:intron 40.0%
CATGCAAAACCATTAGGCAT+TGG - tig0031610:18373-18392 None:intergenic 40.0%
!! CAATGCCTAATGGTTTTGCA+TGG + tig0031610:18371-18390 Msa1447180:intron 40.0%
TATACTTGAGGGATAAGGGA+AGG - tig0031610:18538-18557 None:intergenic 40.0%
! CTGGCTTTCGTTATACTTGA+GGG - tig0031610:18549-18568 None:intergenic 40.0%
! GATCTTTATTGTAGTGGGAG+AGG + tig0031610:18855-18874 Msa1447180:three_prime_UTR 40.0%
TGAACTTAGACCGTTCTTAC+AGG + tig0031610:18896-18915 Msa1447180:three_prime_UTR 40.0%
! GCACAATCCTTTTACTATCC+TGG + tig0031610:19045-19064 Msa1447180:three_prime_UTR 40.0%
! TTCAATTACTGGCCTGAGAT+AGG + tig0031610:19086-19105 Msa1447180:three_prime_UTR 40.0%
TCGTCGCTGAAGAACAACAA+TGG + tig0031610:13312-13331 Msa1447180:exon 45.0%
TCTTACGTGTCATCTCCAGA+AGG + tig0031610:13349-13368 Msa1447180:CDS 45.0%
ACAAACACGCCGTAAGAAAC+AGG - tig0031610:13785-13804 None:intergenic 45.0%
GTGTAACCAAACAGGGACTT+AGG + tig0031610:13857-13876 Msa1447180:intron 45.0%
! TGGTATCACAGTGAGTTGAC+GGG + tig0031610:14073-14092 Msa1447180:intron 45.0%
ACGTGCACACACTTAGAGTT+GGG + tig0031610:14110-14129 Msa1447180:intron 45.0%
AAAATCCACGGCTATTGCAG+CGG - tig0031610:14681-14700 None:intergenic 45.0%
ACTATCATGTGAGCTGCACA+TGG + tig0031610:14781-14800 Msa1447180:intron 45.0%
ATGCTGAATCGGTGATGAGA+TGG + tig0031610:14834-14853 Msa1447180:intron 45.0%
TGCTGAATCGGTGATGAGAT+GGG + tig0031610:14835-14854 Msa1447180:intron 45.0%
!! GAAATAGCGGATAGTGTAGC+AGG - tig0031610:15097-15116 None:intergenic 45.0%
! CTATCCGCTATTTCCCATAG+CGG + tig0031610:15103-15122 Msa1447180:intron 45.0%
GGATCACCAAAAATCCGCTA+TGG - tig0031610:15120-15139 None:intergenic 45.0%
GCCAACGTATGTTAGGTTTC+TGG + tig0031610:15250-15269 Msa1447180:CDS 45.0%
!! TCTGCTGCTGGTTCTGTTAT+TGG + tig0031610:15281-15300 Msa1447180:CDS 45.0%
GGTTCTGTTATTGGAAAGGG+TGG + tig0031610:15290-15309 Msa1447180:CDS 45.0%
TAATCCGATCAGTGGTTCCA+GGG - tig0031610:15385-15404 None:intergenic 45.0%
ATAATCCGATCAGTGGTTCC+AGG - tig0031610:15386-15405 None:intergenic 45.0%
!! ATATGATTAGCTTCACGGCG+AGG + tig0031610:15557-15576 Msa1447180:intron 45.0%
GTTCCTAATGGTTCTTGTGG+TGG + tig0031610:15621-15640 Msa1447180:CDS 45.0%
! TTTAGTTGCAGGGGAAGCAT+AGG - tig0031610:15867-15886 None:intergenic 45.0%
AGTAACAGTGACAGGAACTC+TGG + tig0031610:16086-16105 Msa1447180:CDS 45.0%
CTACTGCCTTCGTCCATATT+AGG - tig0031610:16283-16302 None:intergenic 45.0%
CAGGGGTCCATACATAAACA+GGG - tig0031610:16346-16365 None:intergenic 45.0%
CTGTTTATGTATGGACCCCT+GGG + tig0031610:16345-16364 Msa1447180:intron 45.0%
TCTTCTTTCACCTTCGTTGC+AGG + tig0031610:16375-16394 Msa1447180:intron 45.0%
CATCAGGGACAGTAATGGTA+AGG + tig0031610:16551-16570 Msa1447180:intron 45.0%
ATCCGTGTGTATCTCTGTGA+AGG + tig0031610:16626-16645 Msa1447180:intron 45.0%
! CTTTTCTCACTAAGTGGGGT+CGG - tig0031610:16828-16847 None:intergenic 45.0%
! CGGTCTTTTCTCACTAAGTG+GGG - tig0031610:16832-16851 None:intergenic 45.0%
! CCGGTCTTTTCTCACTAAGT+GGG - tig0031610:16833-16852 None:intergenic 45.0%
CCCACTTAGTGAGAAAAGAC+CGG + tig0031610:16830-16849 Msa1447180:intron 45.0%
! ACCGGTCTTTTCTCACTAAG+TGG - tig0031610:16834-16853 None:intergenic 45.0%
TGCTTATGTCTCGGGTTATC+AGG + tig0031610:17126-17145 Msa1447180:CDS 45.0%
GCTTATGTCTCGGGTTATCA+GGG + tig0031610:17127-17146 Msa1447180:CDS 45.0%
AGCAAAGTTCCAGAACAGCA+AGG + tig0031610:17228-17247 Msa1447180:CDS 45.0%
!! TGAGGAAAACCTTGCTGTTC+TGG - tig0031610:17240-17259 None:intergenic 45.0%
CTAAAGGGGAATGTAGAGAC+AGG + tig0031610:17449-17468 Msa1447180:intron 45.0%
! ATCCTTTGTTGTCTTCCAGG+AGG + tig0031610:18245-18264 Msa1447180:intron 45.0%
ATCCTCCTGGAAGACAACAA+AGG - tig0031610:18250-18269 None:intergenic 45.0%
CGAAGCAACTCAATGACCAT+TGG + tig0031610:18270-18289 Msa1447180:CDS 45.0%
ATGCTCATCTGCAACACCAA+TGG - tig0031610:18289-18308 None:intergenic 45.0%
! GGTGTTGCAGATGAGCATAT+AGG + tig0031610:18291-18310 Msa1447180:CDS 45.0%
CTGATATATTCCTTCCACCG+CGG - tig0031610:18329-18348 None:intergenic 45.0%
GACAGAGGCGATTACATATC+TGG + tig0031610:18475-18494 Msa1447180:CDS 45.0%
!! GCTGGCTTTCGTTATACTTG+AGG - tig0031610:18550-18569 None:intergenic 45.0%
ATCGCAGAGAGCAATTCGTA+CGG + tig0031610:18657-18676 Msa1447180:CDS 45.0%
AATGTATGAGCAGAGCAAGC+AGG - tig0031610:18778-18797 None:intergenic 45.0%
ACTGCTGCCAGGATAGTAAA+AGG - tig0031610:19055-19074 None:intergenic 45.0%
GATATAAGTCAACTGCTGCC+AGG - tig0031610:19066-19085 None:intergenic 45.0%
! TTACTGGCCTGAGATAGGAT+CGG + tig0031610:19091-19110 Msa1447180:three_prime_UTR 45.0%
TAACTCTCCGATCCTATCTC+AGG - tig0031610:19101-19120 None:intergenic 45.0%
! CATCACAACTTGAGGGTGTA+GGG - tig0031610:19179-19198 None:intergenic 45.0%
! ACATCACAACTTGAGGGTGT+AGG - tig0031610:19180-19199 None:intergenic 45.0%
GCACACACATCACAACTTGA+GGG - tig0031610:19186-19205 None:intergenic 45.0%
TGCACACACATCACAACTTG+AGG - tig0031610:19187-19206 None:intergenic 45.0%
!!! TTGTTATTAAATATAAAATA+TGG + tig0031610:14226-14245 Msa1447180:intron 5.0%
ATTCTGCTGCGTTGTGTGTG+AGG - tig0031610:13024-13043 None:intergenic 50.0%
AACAAAACGTGACGTTGCGG+TGG + tig0031610:13063-13082 Msa1447180:five_prime_UTR 50.0%
ACAAAACGTGACGTTGCGGT+GGG + tig0031610:13064-13083 Msa1447180:five_prime_UTR 50.0%
!! AGAAGAAGACGTTGGTGCTG+CGG - tig0031610:13118-13137 None:intergenic 50.0%
TGTGAAGGTGAATCAGGAGG+AGG - tig0031610:13397-13416 None:intergenic 50.0%
CCTTGTGAAGGTGAATCAGG+AGG - tig0031610:13400-13419 None:intergenic 50.0%
CCTCCTGATTCACCTTCACA+AGG + tig0031610:13397-13416 Msa1447180:CDS 50.0%
! CAGTGAGTTGACGGGAATCA+CGG + tig0031610:14081-14100 Msa1447180:intron 50.0%
CAACTCTAAGTGTGTGCACG+TGG - tig0031610:14111-14130 None:intergenic 50.0%
CACGTGCACACACTTAGAGT+TGG + tig0031610:14109-14128 Msa1447180:intron 50.0%
AACCGCGACGAAATCCCATA+CGG + tig0031610:14639-14658 Msa1447180:intron 50.0%
TACCGTATGGGATTTCGTCG+CGG - tig0031610:14644-14663 None:intergenic 50.0%
GCTGAATCGGTGATGAGATG+GGG + tig0031610:14836-14855 Msa1447180:intron 50.0%
CTGAATCGGTGATGAGATGG+GGG + tig0031610:14837-14856 Msa1447180:intron 50.0%
CGTATGTAACCCCAAGACCT+AGG + tig0031610:14861-14880 Msa1447180:intron 50.0%
CTGGTATCAAACTCTGCTGC+TGG + tig0031610:15269-15288 Msa1447180:CDS 50.0%
TCTTCCCTGGAACCACTGAT+CGG + tig0031610:15378-15397 Msa1447180:CDS 50.0%
GGTGGAATAATTGGGAAGGG+AGG + tig0031610:15639-15658 Msa1447180:CDS 50.0%
! GGAGCACCTAATATGGACGA+AGG + tig0031610:16274-16293 Msa1447180:intron 50.0%
CCAGGGGTCCATACATAAAC+AGG - tig0031610:16347-16366 None:intergenic 50.0%
CCTGTTTATGTATGGACCCC+TGG + tig0031610:16344-16363 Msa1447180:intron 50.0%
CTTTCACCTTCGTTGCAGGA+AGG + tig0031610:16379-16398 Msa1447180:intron 50.0%
CTACTTCCTTCCTGCAACGA+AGG - tig0031610:16388-16407 None:intergenic 50.0%
CGTTGCAGGAAGGAAGTAGA+TGG + tig0031610:16389-16408 Msa1447180:intron 50.0%
TGCAGGAAGGAAGTAGATGG+AGG + tig0031610:16392-16411 Msa1447180:intron 50.0%
AGAAGAAAGACAGATGGGCC+CGG - tig0031610:16511-16530 None:intergenic 50.0%
CTAAGTGGGGTCGGTTACAT+GGG - tig0031610:16819-16838 None:intergenic 50.0%
ACTAAGTGGGGTCGGTTACA+TGG - tig0031610:16820-16839 None:intergenic 50.0%
! TATGCTGGTGGTGCAACAGA+TGG - tig0031610:17175-17194 None:intergenic 50.0%
GTTGCACCACCAGCATACAA+CGG + tig0031610:17178-17197 Msa1447180:CDS 50.0%
TTCACTCCGTTGTATGCTGG+TGG - tig0031610:17187-17206 None:intergenic 50.0%
GAGCGAATCACCATTACACG+TGG - tig0031610:18206-18225 None:intergenic 50.0%
! TTGAGTTGCTTCGATCCTCC+TGG - tig0031610:18263-18282 None:intergenic 50.0%
!! ATAGGATTGGTTGTTGGCCG+CGG + tig0031610:18309-18328 Msa1447180:CDS 50.0%
TGCTTATGCTACCGAGAGAG+TGG + tig0031610:18705-18724 Msa1447180:CDS 50.0%
! TTATTGTAGTGGGAGAGGGC+AGG + tig0031610:18860-18879 Msa1447180:three_prime_UTR 50.0%
TGTCATCTCCAGAAGGACCG+AGG + tig0031610:13356-13375 Msa1447180:CDS 55.0%
! GGTGAAGAAGCGTGCTTCCT+CGG - tig0031610:13376-13395 None:intergenic 55.0%
! CAGGGGAAGCATAGGCCATA+GGG - tig0031610:15859-15878 None:intergenic 55.0%
ACTCTGGATGAGCAGATGCG+TGG + tig0031610:16102-16121 Msa1447180:CDS 55.0%
TGCTCTCTGCGATCCCGTTA+TGG - tig0031610:18650-18669 None:intergenic 55.0%
TGCTACCGCTGCAATAGCCG+TGG + tig0031610:14673-14692 Msa1447180:intron 60.0%
!! GGAAGGGAGGTGCTACCATC+AGG + tig0031610:15652-15671 Msa1447180:CDS 60.0%
! GCAGGGGAAGCATAGGCCAT+AGG - tig0031610:15860-15879 None:intergenic 60.0%
GCGTGCTTCCTCGGTCCTTC+TGG - tig0031610:13367-13386 None:intergenic 65.0%
!! GGATTGGTTGTTGGCCGCGG+TGG + tig0031610:18312-18331 Msa1447180:CDS 65.0%
TGGTTGTTGGCCGCGGTGGA+AGG + tig0031610:18316-18335 Msa1447180:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0031610 gene 12956 19322 12956 ID=Msa1447180;Name=Msa1447180
tig0031610 mRNA 12956 19322 12956 ID=Msa1447180-mRNA-1;Parent=Msa1447180;Name=Msa1447180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=262|1|1|1|0.87|0.77|9|590|334
tig0031610 exon 12956 13159 12956 ID=Msa1447180-mRNA-1:exon:15779;Parent=Msa1447180-mRNA-1
tig0031610 exon 13273 13418 13273 ID=Msa1447180-mRNA-1:exon:15780;Parent=Msa1447180-mRNA-1
tig0031610 exon 15237 15475 15237 ID=Msa1447180-mRNA-1:exon:15781;Parent=Msa1447180-mRNA-1
tig0031610 exon 15567 15673 15567 ID=Msa1447180-mRNA-1:exon:15782;Parent=Msa1447180-mRNA-1
tig0031610 exon 16008 16201 16008 ID=Msa1447180-mRNA-1:exon:15783;Parent=Msa1447180-mRNA-1
tig0031610 exon 17125 17249 17125 ID=Msa1447180-mRNA-1:exon:15784;Parent=Msa1447180-mRNA-1
tig0031610 exon 18264 18359 18264 ID=Msa1447180-mRNA-1:exon:15785;Parent=Msa1447180-mRNA-1
tig0031610 exon 18448 18509 18448 ID=Msa1447180-mRNA-1:exon:15786;Parent=Msa1447180-mRNA-1
tig0031610 exon 18639 19322 18639 ID=Msa1447180-mRNA-1:exon:15787;Parent=Msa1447180-mRNA-1
tig0031610 five_prime_UTR 12956 13159 12956 ID=Msa1447180-mRNA-1:five_prime_utr;Parent=Msa1447180-mRNA-1
tig0031610 five_prime_UTR 13273 13330 13273 ID=Msa1447180-mRNA-1:five_prime_utr;Parent=Msa1447180-mRNA-1
tig0031610 CDS 13331 13418 13331 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 15237 15475 15237 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 15567 15673 15567 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 16008 16201 16008 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 17125 17249 17125 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 18264 18359 18264 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 18448 18509 18448 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 CDS 18639 18732 18639 ID=Msa1447180-mRNA-1:cds;Parent=Msa1447180-mRNA-1
tig0031610 three_prime_UTR 18733 19322 18733 ID=Msa1447180-mRNA-1:three_prime_utr;Parent=Msa1447180-mRNA-1
Gene Sequence

>Msa1447180

ATGGAGTCTCCTGAATCTTCTTACGTGTCATCTCCAGAAGGACCGAGGAAGCACGCTTCTTCACCTCCTCCTGATTCACCTTCACAAGATTCTGTAGAAAAGCCAACGTATGTTAGGTTTCTGGTATCAAACTCTGCTGCTGGTTCTGTTATTGGAAAGGGTGGTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGCAATAATGAATTCTTCCCTGGAACCACTGATCGGATTATCATGGTATCTGGTGCAATCAATGAAGTACTAAGAGCTGTAGAGCTCATTCTTTCAAAGTTGCTCAGTGAGCTTCACGGCGAGGATGACAATGATGTTGAGCCAAAAACCAAAGTGAGACTCATTGTTCCTAATGGTTCTTGTGGTGGAATAATTGGGAAGGGAGGTGCTACCATCAGGTCATTCATTGAAGAATCTCAAGCTGGCATTAAAATATCTCCTCAAGATAATAGTTACTATGGACAAAATGATAGGATAGTAACAGTGACAGGAACTCTGGATGAGCAGATGCGTGGAATTGATTTAATTGTTTCTAAATTAGCTGAAGATCCTCATTATTCACATTCCATGAGTTCTCCATTTACATATTCTGGTGCTTATGTCTCGGGTTATCAGGGTGTTCCATATACATATGTGCTTCCATCTGTTGCACCACCAGCATACAACGGAGTGAATTACAGACCTAATGGTACTGGAGCAAAGTTCCAGAACAGCAAGGAGGATCGAAGCAACTCAATGACCATTGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGCCGCGGTGGAAGGAATATATCAGATATTAGTCAGACTAGTGGAGCAAAGATAAAGATATCAGACAGAGGCGATTACATATCTGGAACAACTGATAGGAAAGTTACCATAACGGGATCGCAGAGAGCAATTCGTACGGCTGAATCTATGATACTGCAGAAGGTTGCTTATGCTACCGAGAGAGTGGAGTAG

Protein sequence

>Msa1447180

MESPESSYVSSPEGPRKHASSPPPDSPSQDSVEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLRAVELILSKLLSELHGEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIKISPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSHSMSSPFTYSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRSNSMTIGVADEHIGLVVGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMILQKVAYATERVE*