AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450400 MtrunA17_Chr3g0117341 92.021 376 6 3 1 352 1 376 0.0 676
Msa0450400 MtrunA17_Chr3g0141281 26.271 354 221 10 17 346 10 347 9.53e-34 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450400 AT5G63040.1 53.357 283 100 5 82 341 83 356 2.75e-80 249
Msa0450400 AT5G63040.2 53.357 283 100 5 82 341 83 356 4.06e-80 249
Msa0450400 AT1G48460.1 28.421 285 178 5 87 346 50 333 1.27e-32 124
Msa0450400 AT1G48460.2 33.508 191 109 3 173 346 107 296 4.04e-26 106

Find 116 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATCAATCCCCTTGTTTA+TGG 0.168792 3_3:+35796916 Msa0450400:three_prime_UTR
GTAACCTCTTTAACTCTAAT+TGG 0.174279 3_3:+35796714 Msa0450400:three_prime_UTR
GTTCTTACTTGAAAGATTAA+TGG 0.186826 3_3:-35796115 None:intergenic
GAATCCAACCAACAATAAAT+AGG 0.199228 3_3:-35796963 None:intergenic
GAATTTGTAATTGAGGATTT+TGG 0.238036 3_3:+35796786 Msa0450400:three_prime_UTR
TAAGTATATGCTCAGAATTA+AGG 0.245928 3_3:+35796894 Msa0450400:three_prime_UTR
TTGTTTGTCAACCAAATAAA+TGG 0.250214 3_3:+35793800 Msa0450400:CDS
ACGAACTTCACAAGAAATTC+TGG 0.272010 3_3:-35796608 None:intergenic
GTAGCCGAGAACCATTTATT+TGG 0.282901 3_3:-35793811 None:intergenic
GCTTTATCATTCACAGTTAG+AGG 0.284069 3_3:+35796434 Msa0450400:CDS
TGTTGCAGTGTCTAATTGTA+TGG 0.308668 3_3:-35795870 None:intergenic
TTCCGTTTATAAACTTAAAC+TGG 0.312814 3_3:-35794442 None:intergenic
CATGGCTATAAACAGCTCTT+TGG 0.321164 3_3:+35796478 Msa0450400:CDS
CTGACACGTTTAGATTATAA+AGG 0.331386 3_3:+35796753 Msa0450400:three_prime_UTR
AACGGAAGGCCACAGTTTAA+AGG 0.331704 3_3:+35794458 Msa0450400:CDS
GGAATTGTAGGACATTTAGA+AGG 0.334567 3_3:-35796505 None:intergenic
TGTAATTCCCATGGTCACTA+TGG 0.335205 3_3:+35795964 Msa0450400:CDS
AATAAGCAAGCTACCTTTAG+TGG 0.340330 3_3:-35793840 None:intergenic
ATAAATAGGGTCAAATGGTT+AGG 0.342001 3_3:-35796949 None:intergenic
TTTGAGGACTCATTGTTAAC+AGG 0.343884 3_3:+35794815 Msa0450400:CDS
TCCCATGGTCACTATGGGTT+TGG 0.348807 3_3:+35795970 Msa0450400:CDS
TAGCAGCGATTATTCAATTT+CGG 0.356664 3_3:+35792407 Msa0450400:five_prime_UTR
GCCATAACTATGTATAATAA+TGG 0.367432 3_3:-35792478 None:intergenic
CGCAACTCTTGCTCCGTACC+TGG 0.368258 3_3:+35796021 Msa0450400:CDS
ATCTCACTATCTCTTCTGTA+TGG 0.374452 3_3:-35794674 None:intergenic
GGATCAATCCCCTTGTTTAT+GGG 0.377667 3_3:+35796917 Msa0450400:three_prime_UTR
CTCCCTGATAAATGAAAAGA+TGG 0.380929 3_3:-35794614 None:intergenic
GCAAGAGTTGCGGAGGCTGC+AGG 0.382261 3_3:-35796010 None:intergenic
ATTGTATGGGTCTCCGTAAA+TGG 0.389879 3_3:-35795856 None:intergenic
CATTTGACCCTATTTATTGT+TGG 0.391780 3_3:+35796955 Msa0450400:three_prime_UTR
TCCTTGGTGTGATTTGCATC+TGG 0.400119 3_3:+35796525 Msa0450400:CDS
ACTAAATAGAGCAGCACAAC+TGG 0.402095 3_3:+35796406 Msa0450400:CDS
AATCCAACCAACAATAAATA+GGG 0.408760 3_3:-35796962 None:intergenic
TGCCAGTTTAAGTTTATAAA+CGG 0.409267 3_3:+35794440 Msa0450400:CDS
ATCTCATGAGGAAGCTTGAC+AGG 0.413139 3_3:-35796550 None:intergenic
AAGTATATGCTCAGAATTAA+GGG 0.416150 3_3:+35796895 Msa0450400:three_prime_UTR
GTTGTTATTTACAGGTGTAT+AGG 0.423319 3_3:+35796375 Msa0450400:intron
GGTTTGGTCTGGCCATGGAC+TGG 0.426393 3_3:+35795986 Msa0450400:CDS
GTTGTGCTGCTCTATTTAGT+TGG 0.426838 3_3:-35796403 None:intergenic
ACCATTATTATACATAGTTA+TGG 0.426839 3_3:+35792477 Msa0450400:exon
ATGGCTATAAACAGCTCTTT+GGG 0.429410 3_3:+35796479 Msa0450400:CDS
ATTCTGGACTTCACTGCATC+GGG 0.429687 3_3:-35796592 None:intergenic
GATATCGGAAGTCACCTTCA+TGG 0.441603 3_3:+35796083 Msa0450400:CDS
AATGCCGGGCGGGCCAGGGC+AGG 0.443058 3_3:+35792335 None:intergenic
CTATGGGTTTGGTCTGGCCA+TGG 0.445695 3_3:+35795981 Msa0450400:CDS
TCAACCAAATAAATGGTTCT+CGG 0.446343 3_3:+35793807 Msa0450400:CDS
GGTTGGATTCAAATTATACT+TGG 0.448117 3_3:+35796976 Msa0450400:three_prime_UTR
ATGTCCAATTAGAGTTAAAG+AGG 0.455387 3_3:-35796718 None:intergenic
GGGTCAAATGGTTAGGGACT+TGG 0.456934 3_3:-35796942 None:intergenic
GTAATTCCCATGGTCACTAT+GGG 0.460084 3_3:+35795965 Msa0450400:CDS
CAACAATAAATAGGGTCAAA+TGG 0.461008 3_3:-35796954 None:intergenic
TGACCCTATTTATTGTTGGT+TGG 0.461856 3_3:+35796959 Msa0450400:three_prime_UTR
AATCTCTTCTGTTGCTACTC+TGG 0.463153 3_3:+35795931 Msa0450400:CDS
CTAAATGTCCTACAATTCCT+TGG 0.466535 3_3:+35796509 Msa0450400:CDS
GATCAATCCCCTTGTTTATG+GGG 0.471107 3_3:+35796918 Msa0450400:three_prime_UTR
TGAAAAGATGGGTTGCTAGC+AGG 0.475361 3_3:-35794602 None:intergenic
AAATCACACCAAGGAATTGT+AGG 0.479343 3_3:-35796517 None:intergenic
AAAGAAGCCACAAGGACTGC+AGG 0.483258 3_3:-35794749 None:intergenic
TTGAGCAGTATGCAAGATAT+CGG 0.484764 3_3:+35796068 Msa0450400:intron
TTGGATACTGAAGAAGCAAA+TGG 0.489988 3_3:+35796805 Msa0450400:three_prime_UTR
TGGTCACTATGGGTTTGGTC+TGG 0.490074 3_3:+35795975 Msa0450400:CDS
AAACAGCATACTGTGGTTTG+TGG 0.490815 3_3:+35794724 Msa0450400:CDS
GAGGCTGCAGGGCCAGTCCA+TGG 0.491669 3_3:-35795998 None:intergenic
TAAATAGGGTCAAATGGTTA+GGG 0.492126 3_3:-35796948 None:intergenic
CAGAATATGTAAATGTACTC+TGG 0.494786 3_3:+35796679 Msa0450400:three_prime_UTR
AAATAAATGGTTCTCGGCTA+CGG 0.503553 3_3:+35793813 Msa0450400:CDS
TTCTGCCCAAAGATGAAGTA+GGG 0.505774 3_3:-35796661 None:intergenic
AACAGCATACTGTGGTTTGT+GGG 0.510226 3_3:+35794725 Msa0450400:CDS
TTCTTCTTCTTCTTTCAGAA+CGG 0.511151 3_3:+35792450 Msa0450400:five_prime_UTR
GAACGTTGAAAAGGAGAATG+AGG 0.511643 3_3:-35792547 None:intergenic
TCAACGTTCTTCTCCCCACC+AGG 0.513783 3_3:+35792561 Msa0450400:CDS
GTTGCAGTGTCTAATTGTAT+GGG 0.514895 3_3:-35795869 None:intergenic
AATTCTGGACTTCACTGCAT+CGG 0.521546 3_3:-35796593 None:intergenic
TGTGGGCCCTGCAGTCCTTG+TGG 0.530275 3_3:+35794742 Msa0450400:CDS
TGGACTTCACTGCATCGGGT+TGG 0.534212 3_3:-35796588 None:intergenic
ATGAGGTAAACATGGAAAAG+AGG 0.534352 3_3:-35792530 None:intergenic
TCTTCACTGCTTTCTTCGCA+AGG 0.536442 3_3:-35792365 None:intergenic
CAAGAGTTGCGGAGGCTGCA+GGG 0.539751 3_3:-35796009 None:intergenic
ATTCTGCCCAAAGATGAAGT+AGG 0.556079 3_3:-35796662 None:intergenic
CGGCTACGGATATCCACTAA+AGG 0.557780 3_3:+35793827 Msa0450400:CDS
CACTATCTCTTCTGTATGGG+CGG 0.559418 3_3:-35794670 None:intergenic
AAAGGAGAATGAGGTAAACA+TGG 0.559628 3_3:-35792538 None:intergenic
TGGGGAGAAGAACGTTGAAA+AGG 0.561073 3_3:-35792556 None:intergenic
TGGAACCTTCCTTTAAACTG+TGG 0.561638 3_3:-35794467 None:intergenic
TCTCACTATCTCTTCTGTAT+GGG 0.567051 3_3:-35794673 None:intergenic
ACTTAGTCTTGTAATTCCCA+TGG 0.567450 3_3:+35795955 Msa0450400:CDS
AGTTTAAGTTTATAAACGGA+AGG 0.568004 3_3:+35794444 Msa0450400:CDS
TGCGAAGAAAGCAGTGAAGA+CGG 0.588276 3_3:+35792368 Msa0450400:five_prime_UTR
AAGGTAGGTAGGTACCTGGT+GGG 0.592596 3_3:-35792575 None:intergenic
GACCAAACCCATAGTGACCA+TGG 0.592987 3_3:-35795972 None:intergenic
AATGGAATTGCAGACCATGA+AGG 0.608122 3_3:-35796097 None:intergenic
GAAGGCCACAGTTTAAAGGA+AGG 0.610459 3_3:+35794462 Msa0450400:CDS
GGACTTGGACCCCATAAACA+AGG 0.615473 3_3:-35796927 None:intergenic
GAATTGTAGGACATTTAGAA+GGG 0.618173 3_3:-35796504 None:intergenic
AAGAAGCCACAAGGACTGCA+GGG 0.619797 3_3:-35794748 None:intergenic
GACTTGGACCCCATAAACAA+GGG 0.622305 3_3:-35796926 None:intergenic
GTACGGAGCAAGAGTTGCGG+AGG 0.624407 3_3:-35796017 None:intergenic
AGTATATGCTCAGAATTAAG+GGG 0.626479 3_3:+35796896 Msa0450400:three_prime_UTR
ACGACTATACCAACCAGGTA+CGG 0.628699 3_3:-35796034 None:intergenic
ACCAAACCCATAGTGACCAT+GGG 0.631445 3_3:-35795971 None:intergenic
ATAACTATGTATAATAATGG+TGG 0.635431 3_3:-35792475 None:intergenic
TCTCATGAGGAAGCTTGACA+GGG 0.637541 3_3:-35796549 None:intergenic
AATTTACGCAAATAGAGTGA+AGG 0.641959 3_3:-35794779 None:intergenic
TGAGTTGACTTCACATAACA+TGG 0.642393 3_3:+35796460 Msa0450400:CDS
CAGAAGGTATAAATCTCATG+AGG 0.642726 3_3:-35796562 None:intergenic
AGGTAGGTAGGTACCTGGTG+GGG 0.647651 3_3:-35792574 None:intergenic
TCCCTGATAAATGAAAAGAT+GGG 0.655059 3_3:-35794613 None:intergenic
TGCATCGGGTTGGAAGCAGA+AGG 0.660899 3_3:-35796578 None:intergenic
GATACTGAAGAAGCAAATGG+AGG 0.673897 3_3:+35796808 Msa0450400:three_prime_UTR
TCTGCCCAAAGATGAAGTAG+GGG 0.685377 3_3:-35796660 None:intergenic
ACTTGGACCCCATAAACAAG+GGG 0.686520 3_3:-35796925 None:intergenic
CTGCCCAAAGATGAAGTAGG+GGG 0.696371 3_3:-35796659 None:intergenic
CAGGTACGGAGCAAGAGTTG+CGG 0.709613 3_3:-35796020 None:intergenic
ACCAGATGCAAATCACACCA+AGG 0.715295 3_3:-35796526 None:intergenic
GGAGTCAAAACAGCATACTG+TGG 0.719211 3_3:+35794717 Msa0450400:CDS
GAAGAAAGCAGTGAAGACGG+AGG 0.768385 3_3:+35792371 Msa0450400:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAAAAACGA+GGG - chr3_3:35792677-35792696 None:intergenic 15.0%
!! ACAAAAAAAAAAAAAAAACG+AGG - chr3_3:35792678-35792697 None:intergenic 15.0%
!!! ATTTTTATGAAAATAGTCTA+GGG + chr3_3:35793449-35793468 Msa0450400:intron 15.0%
!! AATGGAAAATTCAAATAAAT+TGG - chr3_3:35793639-35793658 None:intergenic 15.0%
!! ATAAATCTGTTGTAAAAATT+TGG + chr3_3:35793965-35793984 Msa0450400:intron 15.0%
!! GTTAAAATAATCATGAATTA+TGG + chr3_3:35794101-35794120 Msa0450400:intron 15.0%
!!! TTTTTTTTGTATTAGTATCA+TGG + chr3_3:35794405-35794424 Msa0450400:intron 15.0%
!! ACAAGTTATAACTAAAAAAA+TGG - chr3_3:35795146-35795165 None:intergenic 15.0%
!! ACATTTACAAAAATTTGAAT+TGG + chr3_3:35795537-35795556 Msa0450400:intron 15.0%
!!! GTAAAAGAATTTATTTTCTT+AGG + chr3_3:35796998-35797017 Msa0450400:three_prime_UTR 15.0%
!! ATAACTATGTATAATAATGG+TGG - chr3_3:35792478-35792497 None:intergenic 20.0%
!! ACCATTATTATACATAGTTA+TGG + chr3_3:35792477-35792496 Msa0450400:exon 20.0%
!! ATGAGATTCAATTTAATTCA+AGG - chr3_3:35793397-35793416 None:intergenic 20.0%
!!! CATTTTTATGAAAATAGTCT+AGG + chr3_3:35793448-35793467 Msa0450400:intron 20.0%
!! TGATAAAAATTGAACTGTAT+AGG - chr3_3:35793475-35793494 None:intergenic 20.0%
!! TTATGCATATAGTCATTAAT+TGG - chr3_3:35793532-35793551 None:intergenic 20.0%
!!! ATTCAAATAAATTGGTTCAT+TGG - chr3_3:35793631-35793650 None:intergenic 20.0%
!!! ATTCATGATTATTTTAACGA+AGG - chr3_3:35794099-35794118 None:intergenic 20.0%
!! AGCAAATGATTATACATTTA+TGG - chr3_3:35794221-35794240 None:intergenic 20.0%
!! TTATAAAATGATATGAAACC+TGG - chr3_3:35794650-35794669 None:intergenic 20.0%
!!! TTCGGAATAATTAACTATTT+TGG + chr3_3:35794847-35794866 Msa0450400:intron 20.0%
!!! AATATACTATCGCATTTTTT+AGG - chr3_3:35795048-35795067 None:intergenic 20.0%
!! TGATTTATACTGATACATAA+TGG + chr3_3:35795475-35795494 Msa0450400:intron 20.0%
!! TAAAATTATTATGTAGAGCA+AGG - chr3_3:35795686-35795705 None:intergenic 20.0%
!!! TGTTATATTTTAATTCTGCT+TGG + chr3_3:35796254-35796273 Msa0450400:intron 20.0%
!!! CAAATTAAGTTGTTATTTAC+AGG + chr3_3:35796367-35796386 Msa0450400:intron 20.0%
! GCCATAACTATGTATAATAA+TGG - chr3_3:35792481-35792500 None:intergenic 25.0%
! ATGATAATAGAAGAGAAGAA+AGG - chr3_3:35792597-35792616 None:intergenic 25.0%
! AATTCGATGATTTACACATA+TGG - chr3_3:35792811-35792830 None:intergenic 25.0%
! TTTAGTATCACATAAAACAC+GGG - chr3_3:35792865-35792884 None:intergenic 25.0%
! CTTTAGTATCACATAAAACA+CGG - chr3_3:35792866-35792885 None:intergenic 25.0%
! AAAAATTCCTTCAAACTTGA+GGG - chr3_3:35792892-35792911 None:intergenic 25.0%
! AAAAAATTCCTTCAAACTTG+AGG - chr3_3:35792893-35792912 None:intergenic 25.0%
!!! GAATTTTTTTATCGAACAAC+TGG + chr3_3:35792904-35792923 Msa0450400:intron 25.0%
!!! TGCTTATTTTACTCTTATGT+TGG - chr3_3:35792961-35792980 None:intergenic 25.0%
! GAAAAACGATAAGAGAAATA+TGG + chr3_3:35793203-35793222 Msa0450400:intron 25.0%
!! TGGTTTTTGACATAATACTA+TGG + chr3_3:35793223-35793242 Msa0450400:intron 25.0%
!!! TTTTGAGTAGCAGTATAATA+TGG - chr3_3:35793686-35793705 None:intergenic 25.0%
! TTGTTTGTCAACCAAATAAA+TGG + chr3_3:35793800-35793819 Msa0450400:CDS 25.0%
! GTAATCATTCATATCAATCT+TGG - chr3_3:35793930-35793949 None:intergenic 25.0%
! ATTACAACAACAGAAATAGT+GGG - chr3_3:35794189-35794208 None:intergenic 25.0%
! TATTACAACAACAGAAATAG+TGG - chr3_3:35794190-35794209 None:intergenic 25.0%
! ATGTATAATCATTTGCTTGA+TGG + chr3_3:35794224-35794243 Msa0450400:intron 25.0%
! ATAGCACAATTCAAATCTTA+AGG + chr3_3:35794285-35794304 Msa0450400:intron 25.0%
! TAGCACAATTCAAATCTTAA+GGG + chr3_3:35794286-35794305 Msa0450400:intron 25.0%
!! TGCCAGTTTAAGTTTATAAA+CGG + chr3_3:35794440-35794459 Msa0450400:CDS 25.0%
! TTCCGTTTATAAACTTAAAC+TGG - chr3_3:35794445-35794464 None:intergenic 25.0%
!! AGTTTAAGTTTATAAACGGA+AGG + chr3_3:35794444-35794463 Msa0450400:CDS 25.0%
!! TTCTTTTATTGAATTCAGAG+AGG + chr3_3:35794696-35794715 Msa0450400:CDS 25.0%
!!! ATTGCTTTCAATCATTTTTG+AGG + chr3_3:35794799-35794818 Msa0450400:CDS 25.0%
!!! AAATTTGTTAAATACCCCTA+AGG - chr3_3:35794997-35795016 None:intergenic 25.0%
! ATATTCTAGCAAATGCATAT+AGG + chr3_3:35795063-35795082 Msa0450400:intron 25.0%
!!! TTAAACCCACTTATTTTTCT+AGG + chr3_3:35795096-35795115 Msa0450400:intron 25.0%
! ATACTCCTAGAAAAATAAGT+GGG - chr3_3:35795104-35795123 None:intergenic 25.0%
! AATACTCCTAGAAAAATAAG+TGG - chr3_3:35795105-35795124 None:intergenic 25.0%
! GTATTGCAGAAAACAATAAA+GGG - chr3_3:35795210-35795229 None:intergenic 25.0%
!! CTTTATTGTTTTCTGCAATA+CGG + chr3_3:35795209-35795228 Msa0450400:intron 25.0%
!! TTTATTGTTTTCTGCAATAC+GGG + chr3_3:35795210-35795229 Msa0450400:intron 25.0%
! AAAGAGAAATTGAATGTGTT+TGG + chr3_3:35795309-35795328 Msa0450400:intron 25.0%
! AAGAGAAATTGAATGTGTTT+GGG + chr3_3:35795310-35795329 Msa0450400:intron 25.0%
! ACATGTTCATAATTTGGATA+CGG + chr3_3:35795369-35795388 Msa0450400:intron 25.0%
!! CTATTTGTTTCTTCACAAAA+TGG + chr3_3:35795413-35795432 Msa0450400:intron 25.0%
! TTGAACAATGGTATTTAAGT+TGG - chr3_3:35795513-35795532 None:intergenic 25.0%
!!! GTAAATGTTTTGTTGAACAA+TGG - chr3_3:35795525-35795544 None:intergenic 25.0%
!! AAGATATTTGTTGAGTTTCA+TGG + chr3_3:35795571-35795590 Msa0450400:intron 25.0%
!! AGATATTTGTTGAGTTTCAT+GGG + chr3_3:35795572-35795591 Msa0450400:intron 25.0%
! ATTGAAAATTTCTGTGTTTG+AGG - chr3_3:35795662-35795681 None:intergenic 25.0%
!!! AAGAAGATACTTTAGAGTTT+GGG - chr3_3:35795753-35795772 None:intergenic 25.0%
!!! AAAGAAGATACTTTAGAGTT+TGG - chr3_3:35795754-35795773 None:intergenic 25.0%
! AAGAATAATATGAGGAAATC+TGG - chr3_3:35795785-35795804 None:intergenic 25.0%
! GTTCTTACTTGAAAGATTAA+TGG - chr3_3:35796118-35796137 None:intergenic 25.0%
! TTATATTCATTCATTTCACC+AGG - chr3_3:35796163-35796182 None:intergenic 25.0%
!! TTTATCCAGTTTTACCTAAT+TGG + chr3_3:35796192-35796211 Msa0450400:intron 25.0%
!!! ATGAATTTTGACAACCAATT+AGG - chr3_3:35796209-35796228 None:intergenic 25.0%
!! AAATGTACTCTGGATATTTT+TGG + chr3_3:35796689-35796708 Msa0450400:three_prime_UTR 25.0%
!! AATGTACTCTGGATATTTTT+GGG + chr3_3:35796690-35796709 Msa0450400:three_prime_UTR 25.0%
!! AGATTATAAAGGATGTTTTC+AGG + chr3_3:35796764-35796783 Msa0450400:three_prime_UTR 25.0%
!!! TTTTCAGGAATTTGTAATTG+AGG + chr3_3:35796779-35796798 Msa0450400:three_prime_UTR 25.0%
!! GAATTTGTAATTGAGGATTT+TGG + chr3_3:35796786-35796805 Msa0450400:three_prime_UTR 25.0%
! TAAGTATATGCTCAGAATTA+AGG + chr3_3:35796894-35796913 Msa0450400:three_prime_UTR 25.0%
! AAGTATATGCTCAGAATTAA+GGG + chr3_3:35796895-35796914 Msa0450400:three_prime_UTR 25.0%
! AATCCAACCAACAATAAATA+GGG - chr3_3:35796965-35796984 None:intergenic 25.0%
TAGCAGCGATTATTCAATTT+CGG + chr3_3:35792407-35792426 Msa0450400:five_prime_UTR 30.0%
TTCTTCTTCTTCTTTCAGAA+CGG + chr3_3:35792450-35792469 Msa0450400:five_prime_UTR 30.0%
TAATAGAAGAGAAGAAAGGT+AGG - chr3_3:35792593-35792612 None:intergenic 30.0%
! TCAATTTCTGCTGTTTACTT+AGG + chr3_3:35792630-35792649 Msa0450400:intron 30.0%
TGTAAATCATCGAATTCAAG+AGG + chr3_3:35792815-35792834 Msa0450400:intron 30.0%
GTAAATCATCGAATTCAAGA+GGG + chr3_3:35792816-35792835 Msa0450400:intron 30.0%
TAAATCATCGAATTCAAGAG+GGG + chr3_3:35792817-35792836 Msa0450400:intron 30.0%
AAATAAGCATAGTTGAGATG+AGG + chr3_3:35792972-35792991 Msa0450400:intron 30.0%
AGCACATATAGTAGAAAAGA+TGG + chr3_3:35793067-35793086 Msa0450400:intron 30.0%
ACATATAGTAGAAAAGATGG+TGG + chr3_3:35793070-35793089 Msa0450400:intron 30.0%
CATATAGTAGAAAAGATGGT+GGG + chr3_3:35793071-35793090 Msa0450400:intron 30.0%
GGTAAGAATAGTATATCAGA+TGG + chr3_3:35793145-35793164 Msa0450400:intron 30.0%
AAGAATAGTATATCAGATGG+AGG + chr3_3:35793148-35793167 Msa0450400:intron 30.0%
AGAATAGTATATCAGATGGA+GGG + chr3_3:35793149-35793168 Msa0450400:intron 30.0%
AAATTGAATCTCATACGATC+TGG + chr3_3:35793403-35793422 Msa0450400:intron 30.0%
TCCATTTGAGTAATAACTCT+AGG + chr3_3:35793653-35793672 Msa0450400:intron 30.0%
TCCTAGAGTTATTACTCAAA+TGG - chr3_3:35793657-35793676 None:intergenic 30.0%
TACTGCTACTCAAAATTGTT+TGG + chr3_3:35793691-35793710 Msa0450400:intron 30.0%
! ATGAAAAGAAAGCATGTAAG+AGG - chr3_3:35793751-35793770 None:intergenic 30.0%
TCAACCAAATAAATGGTTCT+CGG + chr3_3:35793807-35793826 Msa0450400:CDS 30.0%
!! AAGGTAGCTTGCTTATTTAT+TGG + chr3_3:35793846-35793865 Msa0450400:intron 30.0%
!! TAGCTTGCTTATTTATTGGT+TGG + chr3_3:35793850-35793869 Msa0450400:intron 30.0%
! GAACGATAGCATTTAAGATT+AGG + chr3_3:35794147-35794166 Msa0450400:intron 30.0%
TTACAACAACAGAAATAGTG+GGG - chr3_3:35794188-35794207 None:intergenic 30.0%
TATAATCATTTGCTTGATGG+AGG + chr3_3:35794227-35794246 Msa0450400:intron 30.0%
! GGGAGTGCATATAAAATATT+GGG - chr3_3:35794358-35794377 None:intergenic 30.0%
! AGGGAGTGCATATAAAATAT+TGG - chr3_3:35794359-35794378 None:intergenic 30.0%
! ATATTTTATATGCACTCCCT+TGG + chr3_3:35794359-35794378 Msa0450400:intron 30.0%
GTTAACAAAGACATATCCAA+GGG - chr3_3:35794378-35794397 None:intergenic 30.0%
TGTTAACAAAGACATATCCA+AGG - chr3_3:35794379-35794398 None:intergenic 30.0%
!!! AAAGAGCATTTTGTTGTTTC+TGG - chr3_3:35794490-35794509 None:intergenic 30.0%
!!! GCAATATTATTGTCGTTTTC+TGG - chr3_3:35794569-35794588 None:intergenic 30.0%
! AACCCATCTTTTCATTTATC+AGG + chr3_3:35794611-35794630 Msa0450400:CDS 30.0%
! ACCCATCTTTTCATTTATCA+GGG + chr3_3:35794612-35794631 Msa0450400:CDS 30.0%
TCCCTGATAAATGAAAAGAT+GGG - chr3_3:35794616-35794635 None:intergenic 30.0%
AATTTACGCAAATAGAGTGA+AGG - chr3_3:35794782-35794801 None:intergenic 30.0%
! GTTAACAGGTAACTTTTCTT+CGG + chr3_3:35794829-35794848 Msa0450400:intron 30.0%
!! GGTTGTTCGTTTTAAGTATT+TGG + chr3_3:35794868-35794887 Msa0450400:intron 30.0%
!!! TGTACACTAACTAGCTTTTT+AGG - chr3_3:35795178-35795197 None:intergenic 30.0%
CGTATTGCAGAAAACAATAA+AGG - chr3_3:35795211-35795230 None:intergenic 30.0%
CATCTCACATGTTCATAATT+TGG + chr3_3:35795363-35795382 Msa0450400:intron 30.0%
AAATGGATGACTTCAATCAT+TGG + chr3_3:35795430-35795449 Msa0450400:intron 30.0%
ACTTCAATCATTGGATCATT+GGG + chr3_3:35795439-35795458 Msa0450400:intron 30.0%
GTAATTAGCGTAATTATGCT+AGG + chr3_3:35795603-35795622 Msa0450400:intron 30.0%
CTTCTGTGAAGAATAATATG+AGG - chr3_3:35795793-35795812 None:intergenic 30.0%
! TTCACAGAAGCAATTTTCTA+TGG + chr3_3:35795803-35795822 Msa0450400:intron 30.0%
! TTTTTCTGCTTGACCATTTA+CGG + chr3_3:35795843-35795862 Msa0450400:CDS 30.0%
!! TCTTTTCTTGGATTGATTCT+CGG + chr3_3:35796284-35796303 Msa0450400:intron 30.0%
!! GTTGTTATTTACAGGTGTAT+AGG + chr3_3:35796375-35796394 Msa0450400:intron 30.0%
GAATTGTAGGACATTTAGAA+GGG - chr3_3:35796507-35796526 None:intergenic 30.0%
CAGAATATGTAAATGTACTC+TGG + chr3_3:35796679-35796698 Msa0450400:three_prime_UTR 30.0%
GTAACCTCTTTAACTCTAAT+TGG + chr3_3:35796714-35796733 Msa0450400:three_prime_UTR 30.0%
ATGTCCAATTAGAGTTAAAG+AGG - chr3_3:35796721-35796740 None:intergenic 30.0%
CTGACACGTTTAGATTATAA+AGG + chr3_3:35796753-35796772 Msa0450400:three_prime_UTR 30.0%
AGTATATGCTCAGAATTAAG+GGG + chr3_3:35796896-35796915 Msa0450400:three_prime_UTR 30.0%
TAAATAGGGTCAAATGGTTA+GGG - chr3_3:35796951-35796970 None:intergenic 30.0%
ATAAATAGGGTCAAATGGTT+AGG - chr3_3:35796952-35796971 None:intergenic 30.0%
CAACAATAAATAGGGTCAAA+TGG - chr3_3:35796957-35796976 None:intergenic 30.0%
CATTTGACCCTATTTATTGT+TGG + chr3_3:35796955-35796974 Msa0450400:three_prime_UTR 30.0%
GAATCCAACCAACAATAAAT+AGG - chr3_3:35796966-35796985 None:intergenic 30.0%
GGTTGGATTCAAATTATACT+TGG + chr3_3:35796976-35796995 Msa0450400:three_prime_UTR 30.0%
ATGAGGTAAACATGGAAAAG+AGG - chr3_3:35792533-35792552 None:intergenic 35.0%
AAAGGAGAATGAGGTAAACA+TGG - chr3_3:35792541-35792560 None:intergenic 35.0%
! AAAGTATCCCTCAAGTTTGA+AGG + chr3_3:35792882-35792901 Msa0450400:intron 35.0%
TTGAGATGAGGATATTGTGT+TGG + chr3_3:35792984-35793003 Msa0450400:intron 35.0%
GTGGTAAAACTAGATTCGAT+AGG + chr3_3:35793011-35793030 Msa0450400:intron 35.0%
! GAGAAGAGATGTAGATTTTG+TGG + chr3_3:35793124-35793143 Msa0450400:intron 35.0%
GTGTCAAGTGAAAACAAATC+AGG + chr3_3:35793343-35793362 Msa0450400:intron 35.0%
! TGTGTAGCATCATCAGTTTT+CGG - chr3_3:35793564-35793583 None:intergenic 35.0%
AAATAAATGGTTCTCGGCTA+CGG + chr3_3:35793813-35793832 Msa0450400:CDS 35.0%
AATAAGCAAGCTACCTTTAG+TGG - chr3_3:35793843-35793862 None:intergenic 35.0%
!! TGTATGTGGATTAGGCATTA+GGG + chr3_3:35794033-35794052 Msa0450400:intron 35.0%
! CGAAGGATTTTATTCTGACA+AGG - chr3_3:35794082-35794101 None:intergenic 35.0%
CTCCCTGATAAATGAAAAGA+TGG - chr3_3:35794617-35794636 None:intergenic 35.0%
TTTCATTTATCAGGGAGTGA+TGG + chr3_3:35794620-35794639 Msa0450400:intron 35.0%
TCTCACTATCTCTTCTGTAT+GGG - chr3_3:35794676-35794695 None:intergenic 35.0%
ATCTCACTATCTCTTCTGTA+TGG - chr3_3:35794677-35794696 None:intergenic 35.0%
GAAAAATGAAAGAAGCCACA+AGG - chr3_3:35794760-35794779 None:intergenic 35.0%
TTTGAGGACTCATTGTTAAC+AGG + chr3_3:35794815-35794834 Msa0450400:CDS 35.0%
ACTCCTTCACAAAAACTAGT+GGG - chr3_3:35794958-35794977 None:intergenic 35.0%
TACTCCTTCACAAAAACTAG+TGG - chr3_3:35794959-35794978 None:intergenic 35.0%
!! ATTTTAGCAACATGCACCTT+AGG + chr3_3:35794978-35794997 Msa0450400:intron 35.0%
! TTTTAGCAACATGCACCTTA+GGG + chr3_3:35794979-35794998 Msa0450400:intron 35.0%
AAGATGCTACTAACTTACCA+AGG - chr3_3:35795242-35795261 None:intergenic 35.0%
! TCAATTTCTCTTTTCTCCAC+AGG - chr3_3:35795302-35795321 None:intergenic 35.0%
! ATGTGTTTGGGACTATTGTT+AGG + chr3_3:35795322-35795341 Msa0450400:intron 35.0%
GACTTCAATCATTGGATCAT+TGG + chr3_3:35795438-35795457 Msa0450400:intron 35.0%
! ACAGAAGCAATTTTCTATGG+TGG + chr3_3:35795806-35795825 Msa0450400:intron 35.0%
GTTGCAGTGTCTAATTGTAT+GGG - chr3_3:35795872-35795891 None:intergenic 35.0%
TGTTGCAGTGTCTAATTGTA+TGG - chr3_3:35795873-35795892 None:intergenic 35.0%
!! ACTTAGTCTTGTAATTCCCA+TGG + chr3_3:35795955-35795974 Msa0450400:CDS 35.0%
TTGAGCAGTATGCAAGATAT+CGG + chr3_3:35796068-35796087 Msa0450400:intron 35.0%
GACAACCAATTAGGTAAAAC+TGG - chr3_3:35796200-35796219 None:intergenic 35.0%
!! CTTGGTTCTCTATCTTTTCT+TGG + chr3_3:35796272-35796291 Msa0450400:intron 35.0%
GCTTTATCATTCACAGTTAG+AGG + chr3_3:35796434-35796453 Msa0450400:CDS 35.0%
! TGAGTTGACTTCACATAACA+TGG + chr3_3:35796460-35796479 Msa0450400:CDS 35.0%
ATGGCTATAAACAGCTCTTT+GGG + chr3_3:35796479-35796498 Msa0450400:CDS 35.0%
GGAATTGTAGGACATTTAGA+AGG - chr3_3:35796508-35796527 None:intergenic 35.0%
CTAAATGTCCTACAATTCCT+TGG + chr3_3:35796509-35796528 Msa0450400:CDS 35.0%
AAATCACACCAAGGAATTGT+AGG - chr3_3:35796520-35796539 None:intergenic 35.0%
! CAGAAGGTATAAATCTCATG+AGG - chr3_3:35796565-35796584 None:intergenic 35.0%
ACGAACTTCACAAGAAATTC+TGG - chr3_3:35796611-35796630 None:intergenic 35.0%
TTGGATACTGAAGAAGCAAA+TGG + chr3_3:35796805-35796824 Msa0450400:three_prime_UTR 35.0%
TGACCCTATTTATTGTTGGT+TGG + chr3_3:35796959-35796978 Msa0450400:three_prime_UTR 35.0%
GAACGTTGAAAAGGAGAATG+AGG - chr3_3:35792550-35792569 None:intergenic 40.0%
AGAAGAGAAGAAAGGTAGGT+AGG - chr3_3:35792589-35792608 None:intergenic 40.0%
CAATATGACACAAGTGGTTG+TGG - chr3_3:35792736-35792755 None:intergenic 40.0%
CACAACCACTTGTGTCATAT+TGG + chr3_3:35792734-35792753 Msa0450400:intron 40.0%
AACCACTTGTGTCATATTGG+TGG + chr3_3:35792737-35792756 Msa0450400:intron 40.0%
ATCCACCAATATGACACAAG+TGG - chr3_3:35792742-35792761 None:intergenic 40.0%
AGTATCACATAAAACACGGG+AGG - chr3_3:35792862-35792881 None:intergenic 40.0%
TTATCGAACAACTGGAAGAC+AGG + chr3_3:35792912-35792931 Msa0450400:intron 40.0%
AGACAGGAATGAATGTTGAG+CGG + chr3_3:35792928-35792947 Msa0450400:intron 40.0%
AGGATATTGTGTTGGATGTG+TGG + chr3_3:35792992-35793011 Msa0450400:intron 40.0%
!! TAGAAAAGATGGTGGGAATC+AGG + chr3_3:35793078-35793097 Msa0450400:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr3_3:35793272-35793291 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr3_3:35793273-35793292 None:intergenic 40.0%
TTAGTGGGATAAAGCTTGGT+TGG + chr3_3:35793275-35793294 Msa0450400:intron 40.0%
! GTGTAGCATCATCAGTTTTC+GGG - chr3_3:35793563-35793582 None:intergenic 40.0%
! TTCAGTTGAGCTTTTCACGA+CGG + chr3_3:35793777-35793796 Msa0450400:intron 40.0%
GTAGCCGAGAACCATTTATT+TGG - chr3_3:35793814-35793833 None:intergenic 40.0%
TGGAAGCTTAATGCAGAATG+TGG - chr3_3:35793877-35793896 None:intergenic 40.0%
GAAGATATGCGCAATTGAGT+TGG - chr3_3:35793897-35793916 None:intergenic 40.0%
CAACCTACACCTTTGAATTC+TGG + chr3_3:35794008-35794027 Msa0450400:intron 40.0%
ACATACAGGCCAGAATTCAA+AGG - chr3_3:35794020-35794039 None:intergenic 40.0%
TTTGAATTCTGGCCTGTATG+TGG + chr3_3:35794019-35794038 Msa0450400:intron 40.0%
CTAATGCCTAATCCACATAC+AGG - chr3_3:35794034-35794053 None:intergenic 40.0%
!! CTGTATGTGGATTAGGCATT+AGG + chr3_3:35794032-35794051 Msa0450400:intron 40.0%
!! GTATGTGGATTAGGCATTAG+GGG + chr3_3:35794034-35794053 Msa0450400:intron 40.0%
ATAACGTGTGAAGTTCACAG+TGG + chr3_3:35794260-35794279 Msa0450400:intron 40.0%
TGGAACCTTCCTTTAAACTG+TGG - chr3_3:35794470-35794489 None:intergenic 40.0%
!! TGCTCTTTTTGTTGTCTCTG+AGG + chr3_3:35794502-35794521 Msa0450400:CDS 40.0%
!!! TTATTGTCGTTTTCTGGCAC+TGG - chr3_3:35794563-35794582 None:intergenic 40.0%
AAACAGCATACTGTGGTTTG+TGG + chr3_3:35794724-35794743 Msa0450400:CDS 40.0%
! AACAGCATACTGTGGTTTGT+GGG + chr3_3:35794725-35794744 Msa0450400:CDS 40.0%
!!! ACACCCACTAGTTTTTGTGA+AGG + chr3_3:35794952-35794971 Msa0450400:intron 40.0%
TTTAGCAACATGCACCTTAG+GGG + chr3_3:35794980-35794999 Msa0450400:intron 40.0%
! CATCTGATGATGAAAACCTG+TGG + chr3_3:35795283-35795302 Msa0450400:intron 40.0%
! AACATGTGAGATGTTTTCCC+TGG - chr3_3:35795356-35795375 None:intergenic 40.0%
ATTGGATCATTGGGCAGAAA+TGG + chr3_3:35795448-35795467 Msa0450400:intron 40.0%
GCGTAATTATGCTAGGACAT+TGG + chr3_3:35795610-35795629 Msa0450400:intron 40.0%
ATTGTATGGGTCTCCGTAAA+TGG - chr3_3:35795859-35795878 None:intergenic 40.0%
! AGATTTTCTGTCCCAGTTGA+GGG - chr3_3:35795916-35795935 None:intergenic 40.0%
AATCTCTTCTGTTGCTACTC+TGG + chr3_3:35795931-35795950 Msa0450400:CDS 40.0%
TGTAATTCCCATGGTCACTA+TGG + chr3_3:35795964-35795983 Msa0450400:CDS 40.0%
GTAATTCCCATGGTCACTAT+GGG + chr3_3:35795965-35795984 Msa0450400:CDS 40.0%
CATACTGCTCAAACGCAAAT+TGG - chr3_3:35796060-35796079 None:intergenic 40.0%
AATGGAATTGCAGACCATGA+AGG - chr3_3:35796100-35796119 None:intergenic 40.0%
CAGGAAGACAAACTAAGGAT+TGG - chr3_3:35796144-35796163 None:intergenic 40.0%
!! CAATCCTTAGTTTGTCTTCC+TGG + chr3_3:35796142-35796161 Msa0450400:intron 40.0%
TTCACCAGGAAGACAAACTA+AGG - chr3_3:35796149-35796168 None:intergenic 40.0%
! GTTGTGCTGCTCTATTTAGT+TGG - chr3_3:35796406-35796425 None:intergenic 40.0%
ACTAAATAGAGCAGCACAAC+TGG + chr3_3:35796406-35796425 Msa0450400:CDS 40.0%
CATGGCTATAAACAGCTCTT+TGG + chr3_3:35796478-35796497 Msa0450400:CDS 40.0%
AATTCTGGACTTCACTGCAT+CGG - chr3_3:35796596-35796615 None:intergenic 40.0%
TTCTGCCCAAAGATGAAGTA+GGG - chr3_3:35796664-35796683 None:intergenic 40.0%
ATTCTGCCCAAAGATGAAGT+AGG - chr3_3:35796665-35796684 None:intergenic 40.0%
GATACTGAAGAAGCAAATGG+AGG + chr3_3:35796808-35796827 Msa0450400:three_prime_UTR 40.0%
! GGATCAATCCCCTTGTTTAT+GGG + chr3_3:35796917-35796936 Msa0450400:three_prime_UTR 40.0%
! GATCAATCCCCTTGTTTATG+GGG + chr3_3:35796918-35796937 Msa0450400:three_prime_UTR 40.0%
TCTTCACTGCTTTCTTCGCA+AGG - chr3_3:35792368-35792387 None:intergenic 45.0%
TGCGAAGAAAGCAGTGAAGA+CGG + chr3_3:35792368-35792387 Msa0450400:five_prime_UTR 45.0%
TGGGGAGAAGAACGTTGAAA+AGG - chr3_3:35792559-35792578 None:intergenic 45.0%
AAGAAAGGTAGGTAGGTACC+TGG - chr3_3:35792582-35792601 None:intergenic 45.0%
ATCATCGAATTCAAGAGGGG+TGG + chr3_3:35792820-35792839 Msa0450400:intron 45.0%
GAATCAGGCTTAGGTGCTTT+GGG + chr3_3:35793093-35793112 Msa0450400:intron 45.0%
TACTCGATCGCTAGAGACAA+AGG + chr3_3:35793172-35793191 Msa0450400:intron 45.0%
ACTAAGTGGGGTCAGTTACA+TGG - chr3_3:35793260-35793279 None:intergenic 45.0%
ATGTAACTGACCCCACTTAG+TGG + chr3_3:35793259-35793278 Msa0450400:intron 45.0%
TGTAACTGACCCCACTTAGT+GGG + chr3_3:35793260-35793279 Msa0450400:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr3_3:35793274-35793293 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr3_3:35793271-35793290 Msa0450400:intron 45.0%
! GGATAAAGCTTGGTTGGTGT+TGG + chr3_3:35793281-35793300 Msa0450400:intron 45.0%
! AGGCCAGAATTCAAAGGTGT+AGG - chr3_3:35794014-35794033 None:intergenic 45.0%
TTCTGGCCTGTATGTGGATT+AGG + chr3_3:35794025-35794044 Msa0450400:intron 45.0%
TGACAAGGTGTGATGTTCAG+CGG - chr3_3:35794067-35794086 None:intergenic 45.0%
GCAACTTACACCCTTCAACT+TGG - chr3_3:35794329-35794348 None:intergenic 45.0%
AACGGAAGGCCACAGTTTAA+AGG + chr3_3:35794458-35794477 Msa0450400:CDS 45.0%
GAAGGCCACAGTTTAAAGGA+AGG + chr3_3:35794462-35794481 Msa0450400:CDS 45.0%
!! TGAAAAGATGGGTTGCTAGC+AGG - chr3_3:35794605-35794624 None:intergenic 45.0%
CACTATCTCTTCTGTATGGG+CGG - chr3_3:35794673-35794692 None:intergenic 45.0%
GGAGTCAAAACAGCATACTG+TGG + chr3_3:35794717-35794736 Msa0450400:CDS 45.0%
GTGCACATTGTAGCAGACAA+GGG - chr3_3:35794903-35794922 None:intergenic 45.0%
TGTGCACATTGTAGCAGACA+AGG - chr3_3:35794904-35794923 None:intergenic 45.0%
TATTGTTAGGCGATGATGCC+AGG + chr3_3:35795335-35795354 Msa0450400:intron 45.0%
ATTGTTAGGCGATGATGCCA+GGG + chr3_3:35795336-35795355 Msa0450400:intron 45.0%
AATTTGGATACGGCGCTCAT+TGG + chr3_3:35795379-35795398 Msa0450400:intron 45.0%
! ATTTTCTGTCCCAGTTGAGG+GGG - chr3_3:35795914-35795933 None:intergenic 45.0%
! GATTTTCTGTCCCAGTTGAG+GGG - chr3_3:35795915-35795934 None:intergenic 45.0%
! GAGATTTTCTGTCCCAGTTG+AGG - chr3_3:35795917-35795936 None:intergenic 45.0%
ACCAAACCCATAGTGACCAT+GGG - chr3_3:35795974-35795993 None:intergenic 45.0%
ACGACTATACCAACCAGGTA+CGG - chr3_3:35796037-35796056 None:intergenic 45.0%
ATTGGACGACTATACCAACC+AGG - chr3_3:35796042-35796061 None:intergenic 45.0%
GATATCGGAAGTCACCTTCA+TGG + chr3_3:35796083-35796102 Msa0450400:CDS 45.0%
! TCCTTGGTGTGATTTGCATC+TGG + chr3_3:35796525-35796544 Msa0450400:CDS 45.0%
ACCAGATGCAAATCACACCA+AGG - chr3_3:35796529-35796548 None:intergenic 45.0%
TCTCATGAGGAAGCTTGACA+GGG - chr3_3:35796552-35796571 None:intergenic 45.0%
ATCTCATGAGGAAGCTTGAC+AGG - chr3_3:35796553-35796572 None:intergenic 45.0%
ATTCTGGACTTCACTGCATC+GGG - chr3_3:35796595-35796614 None:intergenic 45.0%
TCTGCCCAAAGATGAAGTAG+GGG - chr3_3:35796663-35796682 None:intergenic 45.0%
! GGGATCAATCCCCTTGTTTA+TGG + chr3_3:35796916-35796935 Msa0450400:three_prime_UTR 45.0%
ACTTGGACCCCATAAACAAG+GGG - chr3_3:35796928-35796947 None:intergenic 45.0%
GACTTGGACCCCATAAACAA+GGG - chr3_3:35796929-35796948 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTGTTAAT+TGG + chr3_3:35792682-35792701 Msa0450400:intron 5.0%
GAAGAAAGCAGTGAAGACGG+AGG + chr3_3:35792371-35792390 Msa0450400:five_prime_UTR 50.0%
AAGGTAGGTAGGTACCTGGT+GGG - chr3_3:35792578-35792597 None:intergenic 50.0%
AAAGGTAGGTAGGTACCTGG+TGG - chr3_3:35792579-35792598 None:intergenic 50.0%
!! AGATGGTGGGAATCAGGCTT+AGG + chr3_3:35793084-35793103 Msa0450400:intron 50.0%
GGAATCAGGCTTAGGTGCTT+TGG + chr3_3:35793092-35793111 Msa0450400:intron 50.0%
! GCTTAGGTGCTTTGGGCATT+TGG + chr3_3:35793100-35793119 Msa0450400:intron 50.0%
CGGCTACGGATATCCACTAA+AGG + chr3_3:35793827-35793846 Msa0450400:CDS 50.0%
CTTAAGGGTTTGTCTGCGCA+TGG + chr3_3:35794301-35794320 Msa0450400:intron 50.0%
! TGCGCATGGATCCAAGTTGA+AGG + chr3_3:35794315-35794334 Msa0450400:intron 50.0%
! GCGCATGGATCCAAGTTGAA+GGG + chr3_3:35794316-35794335 Msa0450400:intron 50.0%
! TCAGGGAGTGATGGAAAACC+AGG + chr3_3:35794629-35794648 Msa0450400:intron 50.0%
AAGAAGCCACAAGGACTGCA+GGG - chr3_3:35794751-35794770 None:intergenic 50.0%
AAAGAAGCCACAAGGACTGC+AGG - chr3_3:35794752-35794771 None:intergenic 50.0%
TCCCATGGTCACTATGGGTT+TGG + chr3_3:35795970-35795989 Msa0450400:CDS 50.0%
GACCAAACCCATAGTGACCA+TGG - chr3_3:35795975-35795994 None:intergenic 50.0%
! TGGTCACTATGGGTTTGGTC+TGG + chr3_3:35795975-35795994 Msa0450400:CDS 50.0%
AGCACCCCCTACTTCATCTT+TGG + chr3_3:35796655-35796674 Msa0450400:three_prime_UTR 50.0%
GCACCCCCTACTTCATCTTT+GGG + chr3_3:35796656-35796675 Msa0450400:three_prime_UTR 50.0%
CTGCCCAAAGATGAAGTAGG+GGG - chr3_3:35796662-35796681 None:intergenic 50.0%
GGACTTGGACCCCATAAACA+AGG - chr3_3:35796930-35796949 None:intergenic 50.0%
GGGTCAAATGGTTAGGGACT+TGG - chr3_3:35796945-35796964 None:intergenic 50.0%
GCAAGGCAAAAAACCTGCCC+TGG - chr3_3:35792351-35792370 None:intergenic 55.0%
TCAACGTTCTTCTCCCCACC+AGG + chr3_3:35792561-35792580 Msa0450400:CDS 55.0%
AGGTAGGTAGGTACCTGGTG+GGG - chr3_3:35792577-35792596 None:intergenic 55.0%
!! TCGTTTTCTGGCACTGGAGC+AGG - chr3_3:35794557-35794576 None:intergenic 55.0%
TGCAATACGGGTGCACTCCT+TGG + chr3_3:35795222-35795241 Msa0450400:intron 55.0%
! ACGGCGCTCATTGGTTGACT+TGG + chr3_3:35795388-35795407 Msa0450400:intron 55.0%
TGATACACTGCCCCCTCAAC+TGG + chr3_3:35795901-35795920 Msa0450400:CDS 55.0%
GATACACTGCCCCCTCAACT+GGG + chr3_3:35795902-35795921 Msa0450400:CDS 55.0%
! CTATGGGTTTGGTCTGGCCA+TGG + chr3_3:35795981-35796000 Msa0450400:CDS 55.0%
CAGGTACGGAGCAAGAGTTG+CGG - chr3_3:35796023-35796042 None:intergenic 55.0%
ACTCTTGCTCCGTACCTGGT+TGG + chr3_3:35796025-35796044 Msa0450400:intron 55.0%
!! TGCATCGGGTTGGAAGCAGA+AGG - chr3_3:35796581-35796600 None:intergenic 55.0%
TGGACTTCACTGCATCGGGT+TGG - chr3_3:35796591-35796610 None:intergenic 55.0%
! GGTTTGGTCTGGCCATGGAC+TGG + chr3_3:35795986-35796005 Msa0450400:CDS 60.0%
CAAGAGTTGCGGAGGCTGCA+GGG - chr3_3:35796012-35796031 None:intergenic 60.0%
GTACGGAGCAAGAGTTGCGG+AGG - chr3_3:35796020-35796039 None:intergenic 60.0%
CGCAACTCTTGCTCCGTACC+TGG + chr3_3:35796021-35796040 Msa0450400:CDS 60.0%
TGTGGGCCCTGCAGTCCTTG+TGG + chr3_3:35794742-35794761 Msa0450400:CDS 65.0%
GCAAGAGTTGCGGAGGCTGC+AGG - chr3_3:35796013-35796032 None:intergenic 65.0%
GAGGCTGCAGGGCCAGTCCA+TGG - chr3_3:35796001-35796020 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 35792342 35797025 35792342 ID=Msa0450400;Name=Msa0450400
chr3_3 mRNA 35792342 35797025 35792342 ID=Msa0450400-mRNA-1;Parent=Msa0450400;Name=Msa0450400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=154|0.5|0.42|1|0.33|0.14|7|421|352
chr3_3 exon 35792342 35792582 35792342 ID=Msa0450400-mRNA-1:exon:6520;Parent=Msa0450400-mRNA-1
chr3_3 exon 35793782 35793848 35793782 ID=Msa0450400-mRNA-1:exon:6521;Parent=Msa0450400-mRNA-1
chr3_3 exon 35794420 35794635 35794420 ID=Msa0450400-mRNA-1:exon:6522;Parent=Msa0450400-mRNA-1
chr3_3 exon 35794651 35794836 35794651 ID=Msa0450400-mRNA-1:exon:6523;Parent=Msa0450400-mRNA-1
chr3_3 exon 35795810 35796042 35795810 ID=Msa0450400-mRNA-1:exon:6524;Parent=Msa0450400-mRNA-1
chr3_3 exon 35796076 35796129 35796076 ID=Msa0450400-mRNA-1:exon:6525;Parent=Msa0450400-mRNA-1
chr3_3 exon 35796389 35797025 35796389 ID=Msa0450400-mRNA-1:exon:6526;Parent=Msa0450400-mRNA-1
chr3_3 five_prime_UTR 35792342 35792495 35792342 ID=Msa0450400-mRNA-1:five_prime_utr;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35792496 35792582 35792496 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35793782 35793848 35793782 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35794420 35794635 35794420 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35794651 35794836 35794651 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35795810 35796042 35795810 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35796076 35796129 35796076 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 CDS 35796389 35796604 35796389 ID=Msa0450400-mRNA-1:cds;Parent=Msa0450400-mRNA-1
chr3_3 three_prime_UTR 35796605 35797025 35796605 ID=Msa0450400-mRNA-1:three_prime_utr;Parent=Msa0450400-mRNA-1
Gene Sequence

>Msa0450400

ATGGCAAATACTACAAATAATAGTTGTAGTAGTTCCTCTTTTCCATGTTTACCTCATTCTCCTTTTCAACGTTCTTCTCCCCACCAGTTGAGCTTTTCACGACGGTTGTTTGTCAACCAAATAAATGGTTCTCGGCTACGGATATCCACTAAAGTATCATGGTTAGACAAATCATGCCAGTTTAAGTTTATAAACGGAAGGCCACAGTTTAAAGGAAGGTTCCAGAAACAACAAAATGCTCTTTTTGTTGTCTCTGAGGATCAGTCACAAAACAATGAGCTCGAAATACCTGCTCCAGTGCCAGAAAACGACAATAATATTGCTCAAGACATCTCTCCTGCTAGCAACCCATCTTTTCATTTATCAGGGAGTTTCATATCATTTTATAACCGCCCATACAGAAGAGATAGTGAGATTCTTTTATTGAATTCAGAGAGGAGTCAAAACAGCATACTGTGGTTTGTGGGCCCTGCAGTCCTTGTGGCTTCTTTCATTTTTCCTTCACTCTATTTGCGTAAATTGCTTTCAATCATTTTTGAGGACTCATTGTTAACAGAAGCAATTTTCTATGGTGGTGTTGCTGTATTTCTTTTTCTGCTTGACCATTTACGGAGACCCATACAATTAGACACTGCAACAAAAAATACTGATACACTGCCCCCTCAACTGGGACAGAAAATCTCTTCTGTTGCTACTCTGGTACTTAGTCTTGTAATTCCCATGGTCACTATGGGTTTGGTCTGGCCATGGACTGGCCCTGCAGCCTCCGCAACTCTTGCTCCGTACCTGTATGCAAGATATCGGAAGTCACCTTCATGGTCTGCAATTCCATTAATCTTTCAAGTGTATAGGCTGCACCAACTAAATAGAGCAGCACAACTGGTGACAGCTTTATCATTCACAGTTAGAGGAGCTGAGTTGACTTCACATAACATGGCTATAAACAGCTCTTTGGGTACCCTTCTAAATGTCCTACAATTCCTTGGTGTGATTTGCATCTGGTCCCTGTCAAGCTTCCTCATGAGATTTATACCTTCTGCTTCCAACCCGATGCAGTGA

Protein sequence

>Msa0450400

MANTTNNSCSSSSFPCLPHSPFQRSSPHQLSFSRRLFVNQINGSRLRISTKVSWLDKSCQFKFINGRPQFKGRFQKQQNALFVVSEDQSQNNELEIPAPVPENDNNIAQDISPASNPSFHLSGSFISFYNRPYRRDSEILLLNSERSQNSILWFVGPAVLVASFIFPSLYLRKLLSIIFEDSLLTEAIFYGGVAVFLFLLDHLRRPIQLDTATKNTDTLPPQLGQKISSVATLVLSLVIPMVTMGLVWPWTGPAASATLAPYLYARYRKSPSWSAIPLIFQVYRLHQLNRAAQLVTALSFTVRGAELTSHNMAINSSLGTLLNVLQFLGVICIWSLSSFLMRFIPSASNPMQ*