AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556180 MtrunA17_Chr4g0044901 86.695 233 23 4 1 227 1 231 1.17e-137 385
Msa0556180 MtrunA17_Chr4g0044871 75.113 221 51 3 9 226 12 231 1.82e-112 321
Msa0556180 MtrunA17_Chr4g0044881 72.458 236 27 8 1 226 33 240 2.86e-105 303
Msa0556180 MtrunA17_Chr4g0044911 70.588 238 52 6 1 226 3 234 6.41e-104 300
Msa0556180 MtrunA17_Chr8g0375031 41.089 202 91 3 13 187 21 221 1.91e-39 135
Msa0556180 MtrunA17_Chr7g0221501 43.077 130 51 2 19 148 1 107 2.60e-30 110
Msa0556180 MtrunA17_Chr7g0221471 43.077 130 51 2 19 148 1 107 5.86e-30 109
Msa0556180 MtrunA17_Chr8g0383591 72.727 66 18 0 83 148 136 201 1.45e-29 112
Msa0556180 MtrunA17_Chr2g0295421 78.125 64 13 1 86 148 89 152 2.33e-28 107
Msa0556180 MtrunA17_Chr1g0195151 68.056 72 23 0 81 152 66 137 2.82e-28 108
Msa0556180 MtrunA17_Chr8g0344961 54.128 109 44 3 82 184 113 221 2.94e-28 110
Msa0556180 MtrunA17_Chr2g0334031 73.529 68 17 1 82 148 106 173 3.76e-28 109
Msa0556180 MtrunA17_Chr5g0396911 57.009 107 36 4 90 190 110 212 4.31e-28 108
Msa0556180 MtrunA17_Chr2g0316931 62.338 77 29 0 80 156 19 95 6.61e-27 102
Msa0556180 MtrunA17_Chr3g0126321 53.333 105 44 3 90 191 111 213 9.66e-27 105
Msa0556180 MtrunA17_Chr2g0282651 69.231 65 20 0 91 155 69 133 3.29e-26 102
Msa0556180 MtrunA17_Chr2g0283171 71.429 63 17 1 88 149 59 121 5.21e-25 96.3
Msa0556180 MtrunA17_Chr1g0184081 77.966 59 12 1 91 148 20 78 5.78e-25 95.9
Msa0556180 MtrunA17_Chr4g0026881 42.188 128 58 3 31 155 49 163 8.39e-25 97.8
Msa0556180 MtrunA17_Chr3g0099871 61.429 70 27 0 89 158 24 93 8.74e-25 97.4
Msa0556180 MtrunA17_Chr1g0158971 66.667 75 23 1 89 163 112 184 1.22e-24 99.8
Msa0556180 MtrunA17_Chr2g0283181 62.667 75 25 2 83 156 140 212 2.20e-24 97.8
Msa0556180 MtrunA17_Chr5g0438831 67.188 64 21 0 91 154 45 108 2.90e-24 97.4
Msa0556180 MtrunA17_Chr3g0131601 42.361 144 53 2 5 148 19 132 4.94e-24 96.3
Msa0556180 MtrunA17_Chr7g0250731 59.494 79 31 1 90 167 59 137 7.06e-24 94.7
Msa0556180 MtrunA17_Chr8g0387801 62.338 77 27 1 90 164 105 181 1.18e-23 96.3
Msa0556180 MtrunA17_Chr4g0046161 68.852 61 18 1 89 148 54 114 1.48e-23 91.7
Msa0556180 MtrunA17_Chr4g0055761 52.083 96 44 2 56 149 108 203 2.54e-23 94.7
Msa0556180 MtrunA17_Chr4g0055781 65.217 69 23 1 82 149 92 160 3.19e-23 94.0
Msa0556180 MtrunA17_Chr7g0250721 59.494 79 31 1 90 167 59 137 3.36e-23 92.8
Msa0556180 MtrunA17_Chr4g0055801 65.217 69 23 1 82 149 144 212 5.94e-23 94.4
Msa0556180 MtrunA17_Chr5g0438801 64.062 64 23 0 91 154 50 113 6.54e-23 94.0
Msa0556180 MtrunA17_Chr8g0335331 68.254 63 19 1 92 153 125 187 8.14e-23 91.7
Msa0556180 MtrunA17_Chr8g0382491 39.286 168 62 7 87 223 108 266 8.48e-23 93.6
Msa0556180 MtrunA17_Chr7g0250711 68.333 60 18 1 90 148 58 117 9.59e-23 91.7
Msa0556180 MtrunA17_Chr7g0261101 75.410 61 14 1 89 148 17 77 1.00e-22 90.1
Msa0556180 MtrunA17_Chr1g0170531 43.165 139 58 5 31 156 30 160 1.26e-22 92.0
Msa0556180 MtrunA17_Chr8g0335311 50.000 94 42 3 73 163 75 166 1.59e-22 90.9
Msa0556180 MtrunA17_Chr8g0335321 59.211 76 26 2 90 164 94 165 1.96e-22 90.9
Msa0556180 MtrunA17_Chr4g0003421 69.355 62 19 0 90 151 38 99 2.10e-22 91.7
Msa0556180 MtrunA17_Chr4g0063751 65.625 64 22 0 90 153 5 68 3.40e-22 90.5
Msa0556180 MtrunA17_Chr5g0437671 63.077 65 24 0 86 150 79 143 3.85e-22 93.6
Msa0556180 MtrunA17_Chr7g0261151 74.576 59 14 1 91 148 19 77 4.43e-22 88.2
Msa0556180 MtrunA17_Chr1g0186731 69.492 59 17 1 91 148 20 78 5.29e-22 88.2
Msa0556180 MtrunA17_Chr4g0002631 61.290 62 24 0 87 148 3 64 5.72e-22 89.4
Msa0556180 MtrunA17_Chr2g0323171 48.958 96 49 0 92 187 65 160 8.35e-22 89.0
Msa0556180 MtrunA17_Chr3g0129421 76.923 65 15 0 84 148 162 226 1.03e-21 91.7
Msa0556180 MtrunA17_Chr3g0134161 55.714 70 30 1 80 148 32 101 1.04e-21 88.2
Msa0556180 MtrunA17_Chr5g0437371 67.797 59 19 0 89 147 63 121 1.65e-21 90.9
Msa0556180 MtrunA17_Chr1g0186671 72.881 59 15 1 91 148 18 76 1.90e-21 86.7
Msa0556180 MtrunA17_Chr5g0432821 57.971 69 29 0 87 155 119 187 2.35e-21 89.7
Msa0556180 MtrunA17_Chr3g0115631 66.129 62 21 0 87 148 145 206 2.39e-21 90.5
Msa0556180 MtrunA17_Chr2g0282621 70.175 57 17 0 92 148 15 71 2.54e-21 87.0
Msa0556180 MtrunA17_Chr2g0333011 62.687 67 25 0 90 156 5 71 2.70e-21 87.0
Msa0556180 MtrunA17_Chr8g0390091 44.444 99 49 2 62 154 1 99 3.02e-21 88.6
Msa0556180 MtrunA17_Chr2g0297331 69.492 59 17 1 91 148 13 71 3.50e-21 85.5
Msa0556180 MtrunA17_Chr8g0367911 54.795 73 33 0 88 160 40 112 3.73e-21 89.4
Msa0556180 MtrunA17_Chr2g0331231 50.000 82 33 1 81 154 22 103 4.14e-21 87.4
Msa0556180 MtrunA17_Chr5g0425561 66.129 62 21 0 87 148 168 229 4.45e-21 90.1
Msa0556180 MtrunA17_Chr6g0486701 60.317 63 25 0 92 154 44 106 4.83e-21 87.4
Msa0556180 MtrunA17_Chr7g0257911 65.517 58 20 0 91 148 30 87 5.65e-21 89.0
Msa0556180 MtrunA17_Chr4g0026931 64.286 70 22 2 89 155 128 197 9.88e-21 87.8
Msa0556180 MtrunA17_Chr1g0196781 63.235 68 21 1 90 157 150 213 1.53e-20 88.2
Msa0556180 MtrunA17_Chr3g0137174 61.290 62 24 0 87 148 3 64 1.74e-20 85.5
Msa0556180 MtrunA17_Chr7g0232261 58.730 63 26 0 92 154 61 123 2.34e-20 86.3
Msa0556180 MtrunA17_Chr1g0183981 60.274 73 26 2 89 158 72 144 3.03e-20 85.5
Msa0556180 MtrunA17_Chr1g0153151 59.016 61 25 0 88 148 40 100 3.09e-20 84.3
Msa0556180 MtrunA17_Chr2g0324131 67.797 59 19 0 90 148 216 274 3.16e-20 88.2
Msa0556180 MtrunA17_Chr1g0196871 59.155 71 26 2 82 149 4 74 3.19e-20 82.0
Msa0556180 MtrunA17_Chr1g0184031 60.274 73 26 2 89 158 81 153 4.06e-20 85.1
Msa0556180 MtrunA17_Chr1g0189941 49.367 79 31 1 78 147 1 79 4.19e-20 83.6
Msa0556180 MtrunA17_Chr6g0453661 47.826 92 46 2 86 175 32 123 5.46e-20 87.4
Msa0556180 MtrunA17_Chr7g0217991 56.164 73 31 1 85 156 35 107 7.70e-20 87.4
Msa0556180 MtrunA17_Chr4g0042761 59.677 62 25 0 86 147 42 103 1.57e-19 85.1
Msa0556180 MtrunA17_Chr1g0184011 61.765 68 23 2 94 158 86 153 1.61e-19 83.6
Msa0556180 MtrunA17_Chr7g0261181 65.217 69 23 1 81 148 2 70 1.70e-19 81.3
Msa0556180 MtrunA17_Chr2g0286161 40.351 114 62 2 83 190 41 154 1.86e-19 84.7
Msa0556180 MtrunA17_Chr5g0401871 54.098 61 28 0 88 148 21 81 2.05e-19 82.4
Msa0556180 MtrunA17_Chr4g0055951 55.556 63 28 0 86 148 68 130 3.09e-19 83.6
Msa0556180 MtrunA17_Chr4g0023411 62.903 62 23 0 92 153 65 126 3.23e-19 82.0
Msa0556180 MtrunA17_Chr3g0140161 61.404 57 22 0 92 148 43 99 3.32e-19 82.0
Msa0556180 MtrunA17_Chr4g0066931 52.632 76 32 1 80 151 37 112 3.67e-19 84.7
Msa0556180 MtrunA17_Chr8g0340311 57.143 63 27 0 92 154 47 109 4.22e-19 82.0
Msa0556180 MtrunA17_Chr1g0184071 57.333 75 29 2 87 158 64 138 4.54e-19 81.3
Msa0556180 MtrunA17_Chr8g0378811 56.061 66 29 0 82 147 45 110 4.64e-19 83.2
Msa0556180 MtrunA17_Chr1g0186681 68.333 60 17 1 91 148 18 77 4.68e-19 80.1
Msa0556180 MtrunA17_Chr4g0062551 56.716 67 29 0 86 152 47 113 6.25e-19 80.1
Msa0556180 MtrunA17_Chr1g0184061 43.200 125 55 4 41 158 31 146 6.30e-19 82.0
Msa0556180 MtrunA17_Chr5g0399441 55.556 63 28 0 92 154 28 90 6.32e-19 80.9
Msa0556180 MtrunA17_Chr1g0183961 74.576 59 14 1 91 148 26 84 6.38e-19 80.1
Msa0556180 MtrunA17_Chr5g0412641 54.667 75 34 0 91 165 45 119 7.66e-19 84.0
Msa0556180 MtrunA17_Chr6g0461941 66.667 72 24 0 89 160 17 88 1.24e-18 80.9
Msa0556180 MtrunA17_Chr8g0345531 64.151 53 19 0 86 138 110 162 1.25e-18 83.2
Msa0556180 MtrunA17_Chr4g0062161 56.716 67 29 0 86 152 47 113 1.71e-18 80.5
Msa0556180 MtrunA17_Chr1g0150691 57.627 59 25 0 90 148 20 78 2.80e-18 80.1
Msa0556180 MtrunA17_Chr1g0183931 67.123 73 21 2 89 158 98 170 2.86e-18 80.9
Msa0556180 MtrunA17_Chr8g0334801 55.556 63 28 0 92 154 52 114 2.90e-18 79.7
Msa0556180 MtrunA17_Chr1g0150671 57.627 59 25 0 90 148 44 102 3.01e-18 81.3
Msa0556180 MtrunA17_Chr7g0252381 66.667 57 19 0 91 147 41 97 3.08e-18 81.3
Msa0556180 MtrunA17_Chr1g0150661 53.968 63 29 0 86 148 29 91 3.48e-18 80.1
Msa0556180 MtrunA17_Chr6g0461271 52.174 69 33 0 79 147 20 88 4.48e-18 81.3
Msa0556180 MtrunA17_Chr7g0261201 42.759 145 54 5 89 207 95 236 6.47e-18 79.7
Msa0556180 MtrunA17_Chr7g0275841 53.968 63 29 0 92 154 28 90 6.99e-18 78.2
Msa0556180 MtrunA17_Chr1g0150631 50.000 68 34 0 81 148 27 94 7.42e-18 79.3
Msa0556180 MtrunA17_Chr7g0253424 61.404 57 22 0 91 147 38 94 7.48e-18 80.1
Msa0556180 MtrunA17_Chr8g0350701 52.941 68 32 0 83 150 18 85 8.64e-18 80.5
Msa0556180 MtrunA17_Chr7g0261171 66.667 75 22 2 86 157 79 153 1.05e-17 79.0
Msa0556180 MtrunA17_Chr7g0243431 60.317 63 18 1 92 147 78 140 1.42e-17 80.9
Msa0556180 MtrunA17_Chr7g0265851 59.649 57 23 0 92 148 24 80 2.51e-17 77.4
Msa0556180 MtrunA17_Chr8g0346741 56.140 57 25 0 92 148 39 95 9.07e-17 75.1
Msa0556180 MtrunA17_Chr1g0203861 50.633 79 30 1 78 147 21 99 9.17e-17 75.9
Msa0556180 MtrunA17_Chr3g0142081 43.443 122 60 3 72 189 24 140 1.24e-16 75.9
Msa0556180 MtrunA17_Chr1g0167781 59.211 76 28 2 85 157 75 150 1.38e-16 75.5
Msa0556180 MtrunA17_Chr1g0186741 46.957 115 49 4 87 194 68 177 1.50e-16 75.5
Msa0556180 MtrunA17_Chr4g0017851 46.269 67 36 0 82 148 108 174 1.84e-16 76.6
Msa0556180 MtrunA17_Chr1g0209891 54.386 57 26 0 83 139 45 101 3.96e-16 75.5
Msa0556180 MtrunA17_Chr1g0200931 47.945 73 35 1 83 152 14 86 6.31e-16 72.0
Msa0556180 MtrunA17_Chr1g0170471 63.462 52 18 1 99 149 90 141 7.28e-16 72.8
Msa0556180 MtrunA17_Chr1g0205961 53.571 56 26 0 83 138 106 161 8.98e-16 75.1
Msa0556180 MtrunA17_Chr2g0301191 56.140 57 25 0 92 148 19 75 9.76e-16 73.2
Msa0556180 MtrunA17_Chr3g0136551 50.820 61 30 0 87 147 60 120 1.03e-15 73.9
Msa0556180 MtrunA17_Chr3g0083501 62.000 50 19 0 99 148 2 51 1.72e-15 68.9
Msa0556180 MtrunA17_Chr6g0473931 60.714 56 22 0 92 147 33 88 1.95e-15 72.0
Msa0556180 MtrunA17_Chr2g0301171 54.386 57 26 0 92 148 19 75 3.43e-15 71.6
Msa0556180 MtrunA17_Chr8g0345551 55.556 54 24 0 85 138 110 163 4.06e-15 73.2
Msa0556180 MtrunA17_Chr1g0155751 50.588 85 37 1 72 156 24 103 4.30e-15 72.4
Msa0556180 MtrunA17_Chr6g0473941 58.929 56 23 0 92 147 33 88 4.48e-15 71.2
Msa0556180 MtrunA17_Chr1g0149331 63.934 61 22 0 89 149 4 64 5.03e-15 70.9
Msa0556180 MtrunA17_Chr6g0473881 50.000 72 27 1 85 147 94 165 5.54e-15 72.4
Msa0556180 MtrunA17_Chr1g0146191 61.905 63 24 0 92 154 47 109 6.15e-15 71.6
Msa0556180 MtrunA17_Chr6g0473741 50.000 72 27 1 85 147 50 121 7.60e-15 71.2
Msa0556180 MtrunA17_Chr6g0486711 60.317 63 25 0 92 154 49 111 7.92e-15 71.2
Msa0556180 MtrunA17_Chr6g0473981 52.778 72 25 1 85 147 38 109 8.54e-15 71.2
Msa0556180 MtrunA17_Chr5g0396191 58.730 63 26 0 92 154 11 73 9.71e-15 70.1
Msa0556180 MtrunA17_Chr3g0137831 67.213 61 20 0 90 150 6 66 1.11e-14 70.1
Msa0556180 MtrunA17_Chr6g0473961 51.389 72 26 1 85 147 38 109 1.39e-14 70.1
Msa0556180 MtrunA17_Chr6g0464581 82.000 50 9 0 99 148 187 236 1.72e-14 71.6
Msa0556180 MtrunA17_Chr1g0201671 82.000 50 9 0 99 148 146 195 1.79e-14 71.6
Msa0556180 MtrunA17_Chr5g0396171 50.000 62 31 0 94 155 26 87 1.84e-14 67.0
Msa0556180 MtrunA17_Chr6g0473781 57.143 56 24 0 92 147 57 112 2.00e-14 69.7
Msa0556180 MtrunA17_Chr6g0473971 50.000 72 27 1 85 147 38 109 2.05e-14 70.1
Msa0556180 MtrunA17_Chr6g0473861 57.143 56 24 0 92 147 63 118 2.11e-14 70.5
Msa0556180 MtrunA17_Chr6g0473771 53.571 56 26 0 92 147 43 98 3.20e-14 66.6
Msa0556180 MtrunA17_Chr2g0301181 52.632 57 27 0 92 148 19 75 4.53e-14 68.9
Msa0556180 MtrunA17_Chr7g0225131 54.237 59 24 1 90 148 27 82 4.79e-14 65.9
Msa0556180 MtrunA17_Chr4g0057241 56.140 57 24 1 92 148 15 70 5.54e-14 67.4
Msa0556180 MtrunA17_Chr5g0396301 34.921 126 67 4 90 200 16 141 6.22e-14 67.4
Msa0556180 MtrunA17_Chr1g0198661 38.462 117 55 2 30 146 17 116 1.03e-13 69.3
Msa0556180 MtrunA17_Chr6g0474001 57.143 56 24 0 92 147 54 109 1.42e-13 68.2
Msa0556180 MtrunA17_Chr5g0438841 49.275 69 35 0 91 159 15 83 1.85e-13 66.2
Msa0556180 MtrunA17_Chr5g0396741 62.687 67 25 0 89 155 114 180 4.91e-13 67.0
Msa0556180 MtrunA17_Chr3g0136541 51.852 54 26 0 94 147 42 95 1.21e-12 65.1
Msa0556180 MtrunA17_Chr5g0423811 50.000 68 33 1 91 157 87 154 1.49e-12 65.5
Msa0556180 MtrunA17_Chr3g0114761 47.368 76 38 1 80 153 13 88 2.40e-12 63.9
Msa0556180 MtrunA17_Chr5g0422501 44.304 79 41 2 81 158 96 172 7.34e-12 63.9
Msa0556180 MtrunA17_Chr5g0424051 48.649 74 37 1 77 149 81 154 1.19e-11 63.2
Msa0556180 MtrunA17_Chr5g0398091 43.038 79 34 2 80 147 37 115 2.74e-11 61.2
Msa0556180 MtrunA17_Chr5g0398061 43.750 80 30 2 83 147 31 110 3.08e-11 60.8
Msa0556180 MtrunA17_Chr6g0473791 53.061 49 23 0 92 140 57 105 3.24e-11 59.3
Msa0556180 MtrunA17_Chr1g0203831 58.621 58 23 1 91 148 56 112 3.40e-11 60.5
Msa0556180 MtrunA17_Chr3g0108241 50.685 73 34 2 92 162 115 187 5.50e-11 60.8
Msa0556180 MtrunA17_Chr2g0321071 49.153 59 28 2 92 148 47 105 6.06e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556180 AT4G34410.1 44.565 184 58 4 5 151 19 195 1.84e-35 127
Msa0556180 AT2G47520.1 73.913 69 17 1 81 148 38 106 8.95e-30 109
Msa0556180 AT2G33710.1 75.000 68 16 1 81 148 60 126 2.28e-29 109
Msa0556180 AT2G33710.2 75.000 68 16 1 81 148 60 126 2.57e-29 110
Msa0556180 AT5G67000.1 42.553 141 68 2 6 146 48 175 6.35e-29 107
Msa0556180 AT5G61890.1 42.069 145 63 4 5 148 22 146 8.73e-29 108
Msa0556180 AT4G11140.1 81.356 59 11 0 90 148 85 143 8.75e-29 110
Msa0556180 AT5G13330.1 76.667 60 14 0 89 148 36 95 1.37e-28 107
Msa0556180 AT3G16770.1 70.588 68 20 0 81 148 68 135 4.84e-28 107
Msa0556180 AT4G27950.1 53.333 105 32 2 89 193 115 202 4.31e-27 106
Msa0556180 AT4G23750.2 72.581 62 17 0 88 149 118 179 3.99e-26 103
Msa0556180 AT4G23750.1 72.581 62 17 0 88 149 118 179 3.99e-26 103
Msa0556180 AT1G72360.1 67.188 64 21 0 85 148 18 81 5.03e-26 100
Msa0556180 AT1G72360.3 61.111 72 28 0 77 148 59 130 7.31e-26 101
Msa0556180 AT1G72360.2 67.188 64 21 0 85 148 69 132 1.07e-25 101
Msa0556180 AT5G44210.1 68.657 67 21 0 87 153 28 94 1.73e-25 99.0
Msa0556180 AT1G03800.1 56.098 82 32 1 69 150 34 111 2.95e-25 99.8
Msa0556180 AT3G15210.1 70.968 62 18 0 91 152 24 85 5.94e-25 98.2
Msa0556180 AT1G28370.2 74.138 58 15 0 91 148 57 114 9.01e-25 97.4
Msa0556180 AT5G53290.1 73.333 60 16 0 90 149 123 182 1.22e-24 100
Msa0556180 AT1G28370.1 74.138 58 15 0 91 148 19 76 1.61e-24 95.5
Msa0556180 AT5G50080.1 49.650 143 52 4 16 148 1 133 2.91e-24 96.3
Msa0556180 AT5G50080.2 77.143 70 14 1 79 148 75 142 3.68e-24 96.3
Msa0556180 AT3G61630.1 66.667 69 16 1 90 151 103 171 3.89e-24 98.2
Msa0556180 AT5G65130.2 40.972 144 63 4 90 215 111 250 6.23e-24 97.1
Msa0556180 AT5G65130.1 40.972 144 63 4 90 215 109 248 6.47e-24 96.7
Msa0556180 AT5G51190.1 65.152 66 22 1 85 149 65 130 1.06e-23 95.1
Msa0556180 AT1G43160.1 47.143 140 41 3 19 148 1 117 1.80e-23 93.6
Msa0556180 AT5G47230.1 74.194 62 15 1 89 149 153 214 1.86e-23 95.9
Msa0556180 AT1G50640.1 69.492 59 18 0 91 149 27 85 4.77e-23 93.2
Msa0556180 AT4G39780.1 45.455 121 62 2 30 148 31 149 7.01e-23 94.0
Msa0556180 AT3G20310.1 46.809 94 44 1 91 184 26 113 8.97e-23 93.2
Msa0556180 AT1G36060.1 60.563 71 28 0 80 150 131 201 1.37e-22 94.0
Msa0556180 AT5G07310.1 78.333 60 13 0 89 148 89 148 1.46e-22 92.8
Msa0556180 AT5G47220.1 72.131 61 16 1 90 149 115 175 1.55e-22 92.4
Msa0556180 AT5G43410.1 74.576 59 14 1 91 148 14 72 1.70e-22 89.4
Msa0556180 AT2G22200.1 66.129 62 21 0 87 148 66 127 1.75e-22 92.8
Msa0556180 AT1G22985.1 67.606 71 18 2 89 154 72 142 1.82e-22 90.1
Msa0556180 AT2G31230.1 61.728 81 28 2 81 158 75 155 2.11e-22 92.0
Msa0556180 AT4G17500.1 72.131 61 16 1 90 149 146 206 2.41e-22 92.4
Msa0556180 AT4G13620.1 65.672 67 23 0 90 156 230 296 2.85e-22 94.0
Msa0556180 AT4G17490.1 70.968 62 17 1 89 149 134 195 3.41e-22 92.4
Msa0556180 AT2G20880.1 61.842 76 26 1 88 163 183 255 3.46e-22 93.2
Msa0556180 AT1G22190.1 67.742 62 20 0 87 148 78 139 3.51e-22 92.0
Msa0556180 AT4G28140.1 53.933 89 32 1 88 167 139 227 4.16e-22 92.4
Msa0556180 AT3G23240.1 59.211 76 28 2 86 158 76 151 4.89e-22 90.5
Msa0556180 AT2G46310.1 47.273 110 52 2 91 194 98 207 6.67e-22 91.7
Msa0556180 AT2G20350.1 42.336 137 64 2 7 143 17 138 7.41e-22 88.6
Msa0556180 AT2G44840.1 63.636 66 23 1 91 155 91 156 7.96e-22 90.1
Msa0556180 AT4G32800.1 54.054 74 34 0 81 154 8 81 9.44e-22 89.7
Msa0556180 AT1G78080.1 67.742 62 20 0 87 148 147 208 1.23e-21 91.7
Msa0556180 AT3G23230.1 71.186 59 16 1 91 148 19 77 1.36e-21 87.4
Msa0556180 AT5G25390.2 60.000 70 28 0 90 159 5 74 1.42e-21 88.6
Msa0556180 AT1G15360.1 66.667 60 20 0 90 149 5 64 1.49e-21 89.0
Msa0556180 AT1G15360.2 66.667 60 20 0 90 149 5 64 1.49e-21 89.0
Msa0556180 AT5G61600.1 63.934 61 21 1 90 149 86 146 3.01e-21 89.0
Msa0556180 AT1G71130.1 56.471 85 29 2 84 163 71 152 3.29e-21 87.0
Msa0556180 AT5G25190.1 61.290 62 24 0 87 148 3 64 3.33e-21 87.4
Msa0556180 AT1G75490.1 44.144 111 47 3 53 156 1 103 3.80e-21 87.8
Msa0556180 AT5G05410.2 66.129 62 21 0 92 153 79 140 4.02e-21 89.7
Msa0556180 AT5G05410.1 66.129 62 21 0 92 153 79 140 5.07e-21 90.1
Msa0556180 AT1G28360.1 68.966 58 18 0 91 148 11 68 5.14e-21 87.0
Msa0556180 AT2G23340.1 57.812 64 27 0 85 148 21 84 6.13e-21 86.7
Msa0556180 AT4G06746.1 59.322 59 24 0 90 148 34 92 7.85e-21 85.5
Msa0556180 AT4G36900.1 55.556 63 28 0 86 148 24 86 1.26e-20 86.3
Msa0556180 AT5G64750.1 78.000 50 11 0 99 148 192 241 1.39e-20 89.4
Msa0556180 AT5G11590.1 53.846 78 31 1 82 154 36 113 2.00e-20 86.7
Msa0556180 AT1G46768.3 60.000 60 24 0 89 148 28 87 3.12e-20 83.6
Msa0556180 AT1G46768.1 60.000 60 24 0 89 148 28 87 3.56e-20 84.0
Msa0556180 AT1G46768.2 60.000 60 24 0 89 148 28 87 3.56e-20 84.0
Msa0556180 AT3G57600.1 61.667 60 23 0 91 150 27 86 5.17e-20 86.3
Msa0556180 AT5G25390.1 58.571 70 26 1 90 159 5 71 6.48e-20 84.0
Msa0556180 AT5G67190.1 43.820 89 37 1 86 174 15 90 6.53e-20 84.0
Msa0556180 AT1G71450.1 56.522 69 30 0 86 154 18 86 8.75e-20 83.6
Msa0556180 AT5G07580.1 62.295 61 22 1 90 149 108 168 9.70e-20 84.3
Msa0556180 AT3G16280.1 63.158 57 21 0 92 148 61 117 1.00e-19 84.7
Msa0556180 AT3G16280.2 63.158 57 21 0 92 148 79 135 1.11e-19 85.1
Msa0556180 AT1G21910.1 54.839 62 28 0 92 153 50 111 1.12e-19 84.3
Msa0556180 AT2G25820.1 63.158 57 21 0 92 148 26 82 1.20e-19 84.3
Msa0556180 AT4G16750.1 55.224 67 30 0 82 148 30 96 1.53e-19 82.8
Msa0556180 AT4G18450.1 67.742 62 18 2 90 149 108 169 1.69e-19 85.5
Msa0556180 AT5G25810.1 54.795 73 28 1 81 148 20 92 1.70e-19 84.0
Msa0556180 AT5G13910.1 54.930 71 32 0 81 151 9 79 1.81e-19 83.6
Msa0556180 AT2G35700.1 61.404 57 22 0 92 148 45 101 1.84e-19 83.2
Msa0556180 AT3G50260.1 55.385 65 28 1 84 148 14 77 2.60e-19 81.6
Msa0556180 AT2G44940.1 63.158 57 21 0 92 148 100 156 2.86e-19 84.7
Msa0556180 AT5G19790.1 59.091 66 27 0 82 147 12 77 2.88e-19 84.0
Msa0556180 AT1G12980.1 66.667 57 19 0 91 147 56 112 3.76e-19 84.7
Msa0556180 AT3G11020.1 64.912 57 20 0 92 148 78 134 5.61e-19 84.3
Msa0556180 AT5G18560.1 54.286 70 28 1 82 147 41 110 7.06e-19 84.3
Msa0556180 AT3G60490.1 61.404 57 22 0 92 148 71 127 1.14e-18 82.4
Msa0556180 AT1G01250.1 48.649 74 35 1 92 165 45 115 1.36e-18 80.9
Msa0556180 AT5G18450.1 53.947 76 30 1 72 147 19 89 1.90e-18 82.4
Msa0556180 AT1G24590.1 66.667 57 19 0 91 147 57 113 5.24e-18 81.3
Msa0556180 AT2G40340.2 59.322 59 24 0 92 150 14 72 5.72e-18 80.9
Msa0556180 AT2G40340.5 59.322 59 24 0 92 150 14 72 5.72e-18 80.9
Msa0556180 AT2G40340.4 59.322 59 24 0 92 150 14 72 5.72e-18 80.9
Msa0556180 AT1G74930.1 47.674 86 41 2 81 162 9 94 6.88e-18 79.0
Msa0556180 AT1G53910.3 64.000 75 25 1 81 155 112 184 6.88e-18 81.6
Msa0556180 AT1G53910.1 64.000 75 25 1 81 155 114 186 6.91e-18 81.6
Msa0556180 AT1G53910.2 64.000 75 25 1 81 155 114 186 6.91e-18 81.6
Msa0556180 AT5G21960.1 59.016 61 25 0 88 148 3 63 8.03e-18 79.3
Msa0556180 AT1G06160.1 65.278 72 22 2 90 158 80 151 8.68e-18 79.7
Msa0556180 AT3G14230.3 72.059 68 18 1 82 148 112 179 1.71e-17 80.5
Msa0556180 AT3G14230.2 72.059 68 18 1 82 148 113 180 1.77e-17 80.5
Msa0556180 AT3G14230.1 72.059 68 18 1 82 148 117 184 1.86e-17 80.5
Msa0556180 AT4G25470.1 54.054 74 32 1 76 147 33 106 2.03e-17 78.2
Msa0556180 AT1G28160.1 62.295 61 23 0 91 151 38 98 2.17e-17 78.6
Msa0556180 AT2G40340.6 59.322 59 24 0 92 150 79 137 2.20e-17 80.1
Msa0556180 AT2G40340.1 59.322 59 24 0 92 150 72 130 2.33e-17 80.1
Msa0556180 AT5G67010.1 37.815 119 55 4 10 125 21 123 2.36e-17 76.6
Msa0556180 AT2G40340.3 59.322 59 24 0 92 150 72 130 2.64e-17 79.3
Msa0556180 AT2G40350.2 55.932 59 26 0 92 150 74 132 2.69e-17 76.6
Msa0556180 AT2G40350.1 43.529 85 41 1 92 169 67 151 2.86e-17 76.3
Msa0556180 AT4G25490.1 52.703 74 33 1 76 147 30 103 3.43e-17 77.4
Msa0556180 AT1G12890.1 59.701 67 25 1 81 147 12 76 5.58e-17 77.0
Msa0556180 AT1G19210.1 50.746 67 33 0 82 148 2 68 9.74e-17 75.5
Msa0556180 AT2G36450.1 50.667 75 33 2 92 165 15 86 9.95e-17 75.5
Msa0556180 AT1G68550.1 68.000 50 16 0 89 138 110 159 1.31e-16 77.8
Msa0556180 AT1G68550.2 68.000 50 16 0 89 138 110 159 1.31e-16 77.8
Msa0556180 AT3G23220.1 67.164 67 21 1 91 156 13 79 1.52e-16 73.9
Msa0556180 AT4G25480.1 51.351 74 34 1 76 147 33 106 1.82e-16 75.5
Msa0556180 AT4G31060.1 51.562 64 31 0 85 148 20 83 2.47e-16 74.7
Msa0556180 AT5G51990.1 42.478 113 46 3 85 188 38 140 5.01e-16 74.7
Msa0556180 AT1G77200.1 59.091 66 27 0 83 148 34 99 6.88e-16 74.7
Msa0556180 AT1G53170.1 61.111 72 27 1 80 150 18 89 1.52e-15 72.4
Msa0556180 AT1G04370.1 72.881 59 15 1 91 148 19 77 2.61e-15 70.5
Msa0556180 AT1G77640.1 48.193 83 40 1 86 165 37 119 2.95e-15 72.8
Msa0556180 AT5G11190.1 56.579 76 28 1 90 160 5 80 4.10e-15 71.2
Msa0556180 AT2G40220.1 66.667 60 20 0 88 147 51 110 6.81e-15 72.8
Msa0556180 AT1G64380.1 54.878 82 30 1 87 168 131 205 5.95e-14 70.1
Msa0556180 AT1G22810.1 43.038 79 42 2 88 163 10 88 8.18e-14 67.0
Msa0556180 AT1G63030.2 47.368 76 31 1 81 147 10 85 1.58e-13 67.0
Msa0556180 AT1G63030.1 47.368 76 31 1 81 147 10 85 1.58e-13 67.0
Msa0556180 AT2G38340.1 59.091 66 19 1 91 148 69 134 1.73e-13 67.8
Msa0556180 AT5G61590.1 60.000 70 25 2 83 149 96 165 2.08e-13 67.0
Msa0556180 AT1G12610.1 41.772 79 37 1 78 147 7 85 8.16e-13 65.5
Msa0556180 AT3G25890.1 64.444 45 16 0 94 138 133 177 8.36e-13 67.0
Msa0556180 AT3G25890.2 64.444 45 16 0 94 138 133 177 8.36e-13 67.0
Msa0556180 AT1G71520.1 41.250 80 42 2 89 163 11 90 1.46e-12 63.5
Msa0556180 AT1G49120.1 61.702 47 18 0 92 138 87 133 1.85e-12 65.9
Msa0556180 AT1G33760.1 52.239 67 32 0 92 158 20 86 4.40e-12 63.2
Msa0556180 AT1G44830.1 54.545 66 29 1 90 154 33 98 1.16e-11 62.4
Msa0556180 AT1G68840.2 48.611 72 35 1 81 152 54 123 1.37e-11 63.5
Msa0556180 AT1G68840.1 48.611 72 35 1 81 152 54 123 1.37e-11 63.5
Msa0556180 AT2G39250.2 46.914 81 35 3 92 166 109 187 5.42e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAACTAATGAGGTTTA+TGG 0.166648 4_1:+54252697 Msa0556180:CDS
ATTGAGACAAATATGGGATT+TGG 0.243614 4_1:+54252626 Msa0556180:CDS
GGCAGAGGCCATGGGGAAAA+TGG 0.260541 4_1:+54252375 Msa0556180:CDS
AATGCAAATTGAGACAAATA+TGG 0.265350 4_1:+54252619 Msa0556180:CDS
ATAATAAGGATTGTGATTAT+TGG 0.269800 4_1:+54252651 Msa0556180:CDS
TATGGGATTTGGGAATAATA+AGG 0.286148 4_1:+54252637 Msa0556180:CDS
ACTAAAAGTGTTCCATGTTC+TGG 0.297402 4_1:-54252744 None:intergenic
TAATAAGGATTGTGATTATT+GGG 0.318423 4_1:+54252652 Msa0556180:CDS
TCCAAAGGGACAACCACTTC+TGG 0.329688 4_1:-54252566 None:intergenic
ATCCTGCTATGTTGCATTCT+CGG 0.340084 4_1:-54252283 None:intergenic
CGAGACGTGCGGTCCGTGTT+TGG 0.360884 4_1:+54252417 Msa0556180:CDS
TTGAGACAAATATGGGATTT+GGG 0.361286 4_1:+54252627 Msa0556180:CDS
GCCAGAAGTGGTTGTCCCTT+TGG 0.361757 4_1:+54252565 Msa0556180:CDS
TGTCCCTTTGGAGGATATAA+AGG 0.371554 4_1:+54252577 Msa0556180:CDS
GCAGAGGCCATGGGGAAAAT+GGG 0.401441 4_1:+54252376 Msa0556180:CDS
CAAGATACCATGTTCACTTC+GGG 0.408002 4_1:-54252260 None:intergenic
AGCTTCTTCCGCCGTGGTAA+AGG 0.419719 4_1:-54252447 None:intergenic
GAGGAGTGAGGCAGAGGCCA+TGG 0.424131 4_1:+54252366 Msa0556180:CDS
CGTGCGGTCCGTGTTTGGCT+CGG 0.435176 4_1:+54252422 Msa0556180:CDS
TGATCCGTGAGGCAAAATTC+AGG 0.438212 4_1:-54252200 None:intergenic
GGTGAGGGTGGTGGTGGAGA+AGG 0.454388 4_1:-54252099 None:intergenic
GTGCGGTCCGTGTTTGGCTC+GGG 0.455397 4_1:+54252423 Msa0556180:CDS
ATCGGAGGTGAGGGTGGTGG+TGG 0.456825 4_1:-54252105 None:intergenic
AGGAGTGAGGCAGAGGCCAT+GGG 0.478974 4_1:+54252367 Msa0556180:CDS
ATGCAAATTGAGACAAATAT+GGG 0.479691 4_1:+54252620 Msa0556180:CDS
TATGGAAAACGCGGTGGAGG+TGG 0.486810 4_1:-54252177 None:intergenic
AAACGCGGTGGAGGTGGAGC+CGG 0.490820 4_1:-54252171 None:intergenic
TGCAACATAGCAGGATGCTT+AGG 0.493726 4_1:+54252290 Msa0556180:CDS
AGTACAGAGGAGTGAGGCAG+AGG 0.495675 4_1:+54252360 Msa0556180:CDS
AAACACGGACCGCACGTCTC+GGG 0.502410 4_1:-54252415 None:intergenic
AGCAGCATTGTCGTAAGCTC+TGG 0.505689 4_1:-54252471 None:intergenic
TGCCGAGAATGCAACATAGC+AGG 0.511948 4_1:+54252281 Msa0556180:CDS
TTGATCGGAGGTGAGGGTGG+TGG 0.516391 4_1:-54252108 None:intergenic
GCAAGATACCATGTTCACTT+CGG 0.520664 4_1:-54252261 None:intergenic
AGAAGTGGTTGTCCCTTTGG+AGG 0.528380 4_1:+54252568 Msa0556180:CDS
CAAACACGGACCGCACGTCT+CGG 0.535999 4_1:-54252416 None:intergenic
TGTGATTATTGGGATAGTAT+CGG 0.542915 4_1:+54252662 Msa0556180:CDS
CGTCCTTTATATCCTCCAAA+GGG 0.548435 4_1:-54252580 None:intergenic
AGGTATGGAAAACGCGGTGG+AGG 0.548473 4_1:-54252180 None:intergenic
CGTGAGGCAAAATTCAGGTA+TGG 0.556005 4_1:-54252195 None:intergenic
GAATTCTTGATCGGAGGTGA+GGG 0.564059 4_1:-54252114 None:intergenic
TCGTCCTTTATATCCTCCAA+AGG 0.564254 4_1:-54252581 None:intergenic
TAAACTGCTGCTTCCGACAG+TGG 0.564361 4_1:-54252225 None:intergenic
CTCACGGATCACTCCACTGT+CGG 0.568227 4_1:+54252212 Msa0556180:CDS
TGAGCTTGGCTCTCGGCCCA+CGG 0.568341 4_1:-54252502 None:intergenic
AATGCTGCTATCGAGTTCCG+TGG 0.573830 4_1:+54252485 Msa0556180:CDS
AACGACGGGAAAATTGAGCT+TGG 0.576286 4_1:-54252516 None:intergenic
TTCTTGATCGGAGGTGAGGG+TGG 0.576817 4_1:-54252111 None:intergenic
AGAATTCTTGATCGGAGGTG+AGG 0.578370 4_1:-54252115 None:intergenic
ATTCTTCTGACTCCAGAACA+TGG 0.580276 4_1:+54252732 Msa0556180:CDS
GGAAAATTGAGCTTGGCTCT+CGG 0.582771 4_1:-54252509 None:intergenic
AATAGTGCCCGAAGTGAACA+TGG 0.591939 4_1:+54252253 Msa0556180:CDS
TTAAGCGATTCATCAACGAC+GGG 0.595662 4_1:-54252530 None:intergenic
GCTCTAACCAACGTAGTCTC+CGG 0.597841 4_1:+54252152 Msa0556180:CDS
GATGGCAGAGAATTCTTGAT+CGG 0.603483 4_1:-54252123 None:intergenic
TGATGAATCGCTTAAGAACG+TGG 0.611709 4_1:+54252538 Msa0556180:CDS
GGCAGAGAATTCTTGATCGG+AGG 0.620344 4_1:-54252120 None:intergenic
TTGGCTCGGGACCTTTACCA+CGG 0.622839 4_1:+54252436 Msa0556180:CDS
CTTAAGCGATTCATCAACGA+CGG 0.628790 4_1:-54252531 None:intergenic
GAACGTGGAGGAGCCAGAAG+TGG 0.633912 4_1:+54252553 Msa0556180:CDS
ATGCTGCTATCGAGTTCCGT+GGG 0.636885 4_1:+54252486 Msa0556180:CDS
TAAAGGTCCCGAGCCAAACA+CGG 0.637276 4_1:-54252430 None:intergenic
GTTGGTTAGAGCAGCGACGA+TGG 0.650660 4_1:-54252141 None:intergenic
GGAGTGAGGCAGAGGCCATG+GGG 0.658766 4_1:+54252368 Msa0556180:CDS
TCTGGCAGCTTCTTCCGCCG+TGG 0.663632 4_1:-54252453 None:intergenic
GATTCGTGACCCGAGACGTG+CGG 0.666469 4_1:+54252406 Msa0556180:CDS
TTCAGGTATGGAAAACGCGG+TGG 0.673360 4_1:-54252183 None:intergenic
AGAGCTAAGAAGAAGTACAG+AGG 0.676163 4_1:+54252347 Msa0556180:CDS
AGAAGAAGTACAGAGGAGTG+AGG 0.683711 4_1:+54252354 Msa0556180:CDS
GGTGGAGCCGGAGACTACGT+TGG 0.715698 4_1:-54252159 None:intergenic
CGACAGTGGAGTGATCCGTG+AGG 0.727066 4_1:-54252211 None:intergenic
AAATTCAGGTATGGAAAACG+CGG 0.727381 4_1:-54252186 None:intergenic
GCTCGGGACCTTTACCACGG+CGG 0.766957 4_1:+54252439 Msa0556180:CDS
TGAATCGCTTAAGAACGTGG+AGG 0.768895 4_1:+54252541 Msa0556180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTTTCTCTTCA+GGG - chr4_1:54252328-54252347 None:intergenic 20.0%
!! ATAATAAGGATTGTGATTAT+TGG + chr4_1:54252651-54252670 Msa0556180:CDS 20.0%
!! TAATAAGGATTGTGATTATT+GGG + chr4_1:54252652-54252671 Msa0556180:CDS 20.0%
!!! CTTTTTTGTTTTTTCTCTTC+AGG - chr4_1:54252329-54252348 None:intergenic 25.0%
! AATGCAAATTGAGACAAATA+TGG + chr4_1:54252619-54252638 Msa0556180:CDS 25.0%
! ATGCAAATTGAGACAAATAT+GGG + chr4_1:54252620-54252639 Msa0556180:CDS 25.0%
ATTGAGACAAATATGGGATT+TGG + chr4_1:54252626-54252645 Msa0556180:CDS 30.0%
TTGAGACAAATATGGGATTT+GGG + chr4_1:54252627-54252646 Msa0556180:CDS 30.0%
TATGGGATTTGGGAATAATA+AGG + chr4_1:54252637-54252656 Msa0556180:CDS 30.0%
TGTGATTATTGGGATAGTAT+CGG + chr4_1:54252662-54252681 Msa0556180:CDS 30.0%
! CTGATTTTCAACAACTAATG+AGG + chr4_1:54252690-54252709 Msa0556180:CDS 30.0%
TCAACAACTAATGAGGTTTA+TGG + chr4_1:54252697-54252716 Msa0556180:CDS 30.0%
AAATTCAGGTATGGAAAACG+CGG - chr4_1:54252189-54252208 None:intergenic 35.0%
! TTTTCTCTTCAGGGAAGAAA+TGG - chr4_1:54252319-54252338 None:intergenic 35.0%
!! ACTAAAAGTGTTCCATGTTC+TGG - chr4_1:54252747-54252766 None:intergenic 35.0%
GATGGCAGAGAATTCTTGAT+CGG - chr4_1:54252126-54252145 None:intergenic 40.0%
! CATACCTGAATTTTGCCTCA+CGG + chr4_1:54252196-54252215 Msa0556180:CDS 40.0%
CAAGATACCATGTTCACTTC+GGG - chr4_1:54252263-54252282 None:intergenic 40.0%
GCAAGATACCATGTTCACTT+CGG - chr4_1:54252264-54252283 None:intergenic 40.0%
ATCCTGCTATGTTGCATTCT+CGG - chr4_1:54252286-54252305 None:intergenic 40.0%
! AGAGCTAAGAAGAAGTACAG+AGG + chr4_1:54252347-54252366 Msa0556180:CDS 40.0%
TTAAGCGATTCATCAACGAC+GGG - chr4_1:54252533-54252552 None:intergenic 40.0%
CTTAAGCGATTCATCAACGA+CGG - chr4_1:54252534-54252553 None:intergenic 40.0%
TGATGAATCGCTTAAGAACG+TGG + chr4_1:54252538-54252557 Msa0556180:CDS 40.0%
! TGTCCCTTTGGAGGATATAA+AGG + chr4_1:54252577-54252596 Msa0556180:CDS 40.0%
CGTCCTTTATATCCTCCAAA+GGG - chr4_1:54252583-54252602 None:intergenic 40.0%
TCGTCCTTTATATCCTCCAA+AGG - chr4_1:54252584-54252603 None:intergenic 40.0%
ATTCTTCTGACTCCAGAACA+TGG + chr4_1:54252732-54252751 Msa0556180:CDS 40.0%
GAATTCTTGATCGGAGGTGA+GGG - chr4_1:54252117-54252136 None:intergenic 45.0%
AGAATTCTTGATCGGAGGTG+AGG - chr4_1:54252118-54252137 None:intergenic 45.0%
CGTGAGGCAAAATTCAGGTA+TGG - chr4_1:54252198-54252217 None:intergenic 45.0%
TGATCCGTGAGGCAAAATTC+AGG - chr4_1:54252203-54252222 None:intergenic 45.0%
AATAGTGCCCGAAGTGAACA+TGG + chr4_1:54252253-54252272 Msa0556180:CDS 45.0%
TGCAACATAGCAGGATGCTT+AGG + chr4_1:54252290-54252309 Msa0556180:CDS 45.0%
! AGAAGAAGTACAGAGGAGTG+AGG + chr4_1:54252354-54252373 Msa0556180:CDS 45.0%
! GGAAAATTGAGCTTGGCTCT+CGG - chr4_1:54252512-54252531 None:intergenic 45.0%
AACGACGGGAAAATTGAGCT+TGG - chr4_1:54252519-54252538 None:intergenic 45.0%
TGAATCGCTTAAGAACGTGG+AGG + chr4_1:54252541-54252560 Msa0556180:CDS 45.0%
GGCAGAGAATTCTTGATCGG+AGG - chr4_1:54252123-54252142 None:intergenic 50.0%
GCTCTAACCAACGTAGTCTC+CGG + chr4_1:54252152-54252171 Msa0556180:CDS 50.0%
TTCAGGTATGGAAAACGCGG+TGG - chr4_1:54252186-54252205 None:intergenic 50.0%
! TAAACTGCTGCTTCCGACAG+TGG - chr4_1:54252228-54252247 None:intergenic 50.0%
TGCCGAGAATGCAACATAGC+AGG + chr4_1:54252281-54252300 Msa0556180:CDS 50.0%
TAAAGGTCCCGAGCCAAACA+CGG - chr4_1:54252433-54252452 None:intergenic 50.0%
AGCAGCATTGTCGTAAGCTC+TGG - chr4_1:54252474-54252493 None:intergenic 50.0%
AATGCTGCTATCGAGTTCCG+TGG + chr4_1:54252485-54252504 Msa0556180:CDS 50.0%
ATGCTGCTATCGAGTTCCGT+GGG + chr4_1:54252486-54252505 Msa0556180:CDS 50.0%
TCCAAAGGGACAACCACTTC+TGG - chr4_1:54252569-54252588 None:intergenic 50.0%
AGAAGTGGTTGTCCCTTTGG+AGG + chr4_1:54252568-54252587 Msa0556180:CDS 50.0%
TTCTTGATCGGAGGTGAGGG+TGG - chr4_1:54252114-54252133 None:intergenic 55.0%
GTTGGTTAGAGCAGCGACGA+TGG - chr4_1:54252144-54252163 None:intergenic 55.0%
TATGGAAAACGCGGTGGAGG+TGG - chr4_1:54252180-54252199 None:intergenic 55.0%
AGGTATGGAAAACGCGGTGG+AGG - chr4_1:54252183-54252202 None:intergenic 55.0%
CTCACGGATCACTCCACTGT+CGG + chr4_1:54252212-54252231 Msa0556180:CDS 55.0%
AGTACAGAGGAGTGAGGCAG+AGG + chr4_1:54252360-54252379 Msa0556180:CDS 55.0%
GCAGAGGCCATGGGGAAAAT+GGG + chr4_1:54252376-54252395 Msa0556180:CDS 55.0%
! TCAGCAGCCCATTTTCCCCA+TGG - chr4_1:54252386-54252405 None:intergenic 55.0%
!! TTGGCTCGGGACCTTTACCA+CGG + chr4_1:54252436-54252455 Msa0556180:CDS 55.0%
AGCTTCTTCCGCCGTGGTAA+AGG - chr4_1:54252450-54252469 None:intergenic 55.0%
GCCAGAAGTGGTTGTCCCTT+TGG + chr4_1:54252565-54252584 Msa0556180:CDS 55.0%
TTGATCGGAGGTGAGGGTGG+TGG - chr4_1:54252111-54252130 None:intergenic 60.0%
CGACAGTGGAGTGATCCGTG+AGG - chr4_1:54252214-54252233 None:intergenic 60.0%
AGGAGTGAGGCAGAGGCCAT+GGG + chr4_1:54252367-54252386 Msa0556180:CDS 60.0%
GGCAGAGGCCATGGGGAAAA+TGG + chr4_1:54252375-54252394 Msa0556180:CDS 60.0%
GATTCGTGACCCGAGACGTG+CGG + chr4_1:54252406-54252425 Msa0556180:CDS 60.0%
AAACACGGACCGCACGTCTC+GGG - chr4_1:54252418-54252437 None:intergenic 60.0%
CAAACACGGACCGCACGTCT+CGG - chr4_1:54252419-54252438 None:intergenic 60.0%
GAACGTGGAGGAGCCAGAAG+TGG + chr4_1:54252553-54252572 Msa0556180:CDS 60.0%
!! GGTGAGGGTGGTGGTGGAGA+AGG - chr4_1:54252102-54252121 None:intergenic 65.0%
! ATCGGAGGTGAGGGTGGTGG+TGG - chr4_1:54252108-54252127 None:intergenic 65.0%
GGTGGAGCCGGAGACTACGT+TGG - chr4_1:54252162-54252181 None:intergenic 65.0%
AAACGCGGTGGAGGTGGAGC+CGG - chr4_1:54252174-54252193 None:intergenic 65.0%
GAGGAGTGAGGCAGAGGCCA+TGG + chr4_1:54252366-54252385 Msa0556180:CDS 65.0%
GGAGTGAGGCAGAGGCCATG+GGG + chr4_1:54252368-54252387 Msa0556180:CDS 65.0%
CGAGACGTGCGGTCCGTGTT+TGG + chr4_1:54252417-54252436 Msa0556180:CDS 65.0%
CGTGCGGTCCGTGTTTGGCT+CGG + chr4_1:54252422-54252441 Msa0556180:CDS 65.0%
! GTGCGGTCCGTGTTTGGCTC+GGG + chr4_1:54252423-54252442 Msa0556180:CDS 65.0%
GCTCGGGACCTTTACCACGG+CGG + chr4_1:54252439-54252458 Msa0556180:CDS 65.0%
TCTGGCAGCTTCTTCCGCCG+TGG - chr4_1:54252456-54252475 None:intergenic 65.0%
! TGAGCTTGGCTCTCGGCCCA+CGG - chr4_1:54252505-54252524 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54252089 54252772 54252089 ID=Msa0556180;Name=Msa0556180
chr4_1 mRNA 54252089 54252772 54252089 ID=Msa0556180-mRNA-1;Parent=Msa0556180;Name=Msa0556180-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|227
chr4_1 exon 54252089 54252772 54252089 ID=Msa0556180-mRNA-1:exon:15938;Parent=Msa0556180-mRNA-1
chr4_1 CDS 54252089 54252772 54252089 ID=Msa0556180-mRNA-1:cds;Parent=Msa0556180-mRNA-1
Gene Sequence

>Msa0556180

ATGAACTACGCCTTCTCCACCACCACCCTCACCTCCGATCAAGAATTCTCTGCCATCGTCGCTGCTCTAACCAACGTAGTCTCCGGCTCCACCTCCACCGCGTTTTCCATACCTGAATTTTGCCTCACGGATCACTCCACTGTCGGAAGCAGCAGTTTAGAACGAATAGTGCCCGAAGTGAACATGGTATCTTGCCGAGAATGCAACATAGCAGGATGCTTAGGATGCCATTTCTTCCCTGAAGAGAAAAAACAAAAAAGAGCTAAGAAGAAGTACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCTGAGATTCGTGACCCGAGACGTGCGGTCCGTGTTTGGCTCGGGACCTTTACCACGGCGGAAGAAGCTGCCAGAGCTTACGACAATGCTGCTATCGAGTTCCGTGGGCCGAGAGCCAAGCTCAATTTTCCCGTCGTTGATGAATCGCTTAAGAACGTGGAGGAGCCAGAAGTGGTTGTCCCTTTGGAGGATATAAAGGACGAGAATATGAATCAAGAAATGCAAATTGAGACAAATATGGGATTTGGGAATAATAAGGATTGTGATTATTGGGATAGTATCGGAGAAGCTGATTTTCAACAACTAATGAGGTTTATGGATTTTGATAGAGATTCTTCTGACTCCAGAACATGGAACACTTTTAGTTCTTGA
Protein sequence

>Msa0556180

MNYAFSTTTLTSDQEFSAIVAALTNVVSGSTSTAFSIPEFCLTDHSTVGSSSLERIVPEVNMVSCRECNIAGCLGCHFFPEEKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPVVDESLKNVEEPEVVVPLEDIKDENMNQEMQIETNMGFGNNKDCDYWDSIGEADFQQLMRFMDFDRDSSDSRTWNTFSS*