AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556150 MtrunA17_Chr4g0044871 87.931 232 26 2 1 231 1 231 4.20e-136 381
Msa0556150 MtrunA17_Chr4g0044901 73.684 228 55 3 8 231 4 230 1.50e-112 322
Msa0556150 MtrunA17_Chr4g0044911 70.954 241 51 5 1 231 3 234 6.10e-105 303
Msa0556150 MtrunA17_Chr4g0044881 71.121 232 33 8 7 231 36 240 1.16e-101 295
Msa0556150 MtrunA17_Chr8g0375031 46.448 183 66 7 2 155 5 184 4.05e-40 137
Msa0556150 MtrunA17_Chr7g0221471 45.455 132 46 5 22 152 1 107 1.76e-30 111
Msa0556150 MtrunA17_Chr8g0383591 72.059 68 19 0 85 152 134 201 2.24e-30 114
Msa0556150 MtrunA17_Chr7g0221501 70.769 65 19 0 88 152 43 107 5.01e-30 110
Msa0556150 MtrunA17_Chr8g0344961 54.054 111 35 4 75 185 105 199 4.82e-29 112
Msa0556150 MtrunA17_Chr1g0195151 43.125 160 66 6 89 227 70 225 9.77e-29 110
Msa0556150 MtrunA17_Chr2g0295421 78.125 64 13 1 90 152 89 152 1.19e-28 108
Msa0556150 MtrunA17_Chr2g0334031 70.423 71 20 1 83 152 103 173 1.21e-28 110
Msa0556150 MtrunA17_Chr5g0396911 68.000 75 21 1 94 165 110 184 3.60e-28 108
Msa0556150 MtrunA17_Chr3g0126321 62.963 81 29 1 94 174 111 190 8.33e-27 105
Msa0556150 MtrunA17_Chr2g0282651 69.231 65 20 0 95 159 69 133 1.25e-26 103
Msa0556150 MtrunA17_Chr2g0316931 64.103 78 26 1 85 160 18 95 1.99e-26 101
Msa0556150 MtrunA17_Chr1g0184081 69.014 71 21 1 83 152 8 78 4.69e-26 99.0
Msa0556150 MtrunA17_Chr1g0158971 42.254 142 62 4 50 185 63 190 7.90e-26 102
Msa0556150 MtrunA17_Chr3g0099871 64.706 68 24 0 95 162 26 93 1.49e-25 99.8
Msa0556150 MtrunA17_Chr2g0283171 72.581 62 16 1 92 152 59 120 1.81e-25 97.8
Msa0556150 MtrunA17_Chr2g0283181 63.158 76 25 2 86 160 139 212 2.42e-25 100
Msa0556150 MtrunA17_Chr5g0438831 67.188 64 21 0 95 158 45 108 9.06e-25 99.0
Msa0556150 MtrunA17_Chr8g0335321 58.750 80 28 2 94 172 94 169 4.29e-24 95.5
Msa0556150 MtrunA17_Chr8g0387801 74.138 58 15 0 94 151 105 162 7.65e-24 97.1
Msa0556150 MtrunA17_Chr4g0046161 68.852 61 18 1 93 152 54 114 8.27e-24 92.4
Msa0556150 MtrunA17_Chr4g0055781 72.581 62 16 1 93 153 99 160 8.44e-24 95.9
Msa0556150 MtrunA17_Chr7g0250731 59.740 77 30 1 94 169 59 135 9.94e-24 94.4
Msa0556150 MtrunA17_Chr4g0055801 66.667 69 22 1 86 153 144 212 1.86e-23 95.9
Msa0556150 MtrunA17_Chr8g0335331 70.968 62 16 2 96 155 125 186 2.43e-23 93.2
Msa0556150 MtrunA17_Chr4g0055761 66.197 71 23 1 84 153 133 203 2.53e-23 94.7
Msa0556150 MtrunA17_Chr5g0438801 64.062 64 23 0 95 158 50 113 2.57e-23 95.1
Msa0556150 MtrunA17_Chr7g0250721 59.740 77 30 1 94 169 59 135 3.71e-23 92.8
Msa0556150 MtrunA17_Chr3g0131601 46.377 138 43 5 15 152 26 132 4.12e-23 94.0
Msa0556150 MtrunA17_Chr7g0261101 75.410 61 14 1 93 152 17 77 4.78e-23 90.9
Msa0556150 MtrunA17_Chr3g0129421 51.562 128 51 3 45 172 126 242 5.12e-23 95.5
Msa0556150 MtrunA17_Chr7g0250711 68.333 60 18 1 94 152 58 117 5.69e-23 92.4
Msa0556150 MtrunA17_Chr1g0170531 61.538 78 23 2 90 160 83 160 6.91e-23 92.8
Msa0556150 MtrunA17_Chr4g0026881 51.485 101 37 4 93 181 94 194 1.09e-22 92.4
Msa0556150 MtrunA17_Chr8g0382491 66.129 62 21 0 91 152 108 169 1.51e-22 93.2
Msa0556150 MtrunA17_Chr4g0002631 61.290 62 24 0 91 152 3 64 2.18e-22 90.5
Msa0556150 MtrunA17_Chr4g0063751 65.625 64 22 0 94 157 5 68 2.41e-22 90.9
Msa0556150 MtrunA17_Chr7g0261151 74.576 59 14 1 95 152 19 77 2.42e-22 89.0
Msa0556150 MtrunA17_Chr5g0437671 63.077 65 24 0 90 154 79 143 2.44e-22 94.4
Msa0556150 MtrunA17_Chr1g0186731 69.492 59 17 1 95 152 20 78 2.46e-22 89.0
Msa0556150 MtrunA17_Chr2g0323171 48.454 97 49 1 96 192 65 160 2.65e-22 90.1
Msa0556150 MtrunA17_Chr8g0335311 64.062 64 21 2 94 155 94 157 3.00e-22 90.5
Msa0556150 MtrunA17_Chr4g0003421 67.742 62 20 0 94 155 38 99 3.04e-22 91.3
Msa0556150 MtrunA17_Chr5g0437371 67.797 59 19 0 93 151 63 121 4.62e-22 92.4
Msa0556150 MtrunA17_Chr3g0115631 69.492 59 18 0 94 152 148 206 6.74e-22 92.0
Msa0556150 MtrunA17_Chr3g0134161 48.352 91 44 2 64 152 12 101 7.80e-22 88.6
Msa0556150 MtrunA17_Chr5g0432821 54.321 81 36 1 91 170 119 199 8.26e-22 90.9
Msa0556150 MtrunA17_Chr1g0186671 72.881 59 15 1 95 152 18 76 9.80e-22 87.4
Msa0556150 MtrunA17_Chr2g0286161 42.017 119 59 3 84 194 37 153 1.02e-21 90.9
Msa0556150 MtrunA17_Chr5g0425561 66.129 62 21 0 91 152 168 229 1.03e-21 92.0
Msa0556150 MtrunA17_Chr2g0282621 68.966 58 18 0 95 152 14 71 1.23e-21 88.2
Msa0556150 MtrunA17_Chr2g0297331 61.429 70 26 1 84 152 2 71 1.23e-21 87.0
Msa0556150 MtrunA17_Chr8g0367911 54.795 73 33 0 92 164 40 112 1.26e-21 90.5
Msa0556150 MtrunA17_Chr4g0042761 37.956 137 67 2 90 208 42 178 1.63e-21 90.9
Msa0556150 MtrunA17_Chr7g0257911 65.517 58 20 0 95 152 30 87 1.69e-21 90.1
Msa0556150 MtrunA17_Chr1g0153151 46.154 91 36 1 92 182 40 117 1.91e-21 87.8
Msa0556150 MtrunA17_Chr2g0333011 66.667 60 20 0 94 153 5 64 2.70e-21 87.0
Msa0556150 MtrunA17_Chr8g0390091 42.424 99 53 1 64 158 1 99 2.93e-21 88.6
Msa0556150 MtrunA17_Chr6g0486701 60.317 63 25 0 96 158 44 106 2.99e-21 88.2
Msa0556150 MtrunA17_Chr7g0232261 50.617 81 33 1 85 158 43 123 3.02e-21 88.6
Msa0556150 MtrunA17_Chr1g0196781 63.235 68 21 1 94 161 150 213 3.42e-21 89.7
Msa0556150 MtrunA17_Chr1g0183981 43.443 122 49 5 83 195 66 176 4.36e-21 87.8
Msa0556150 MtrunA17_Chr2g0331231 44.898 98 36 2 79 158 6 103 4.80e-21 87.4
Msa0556150 MtrunA17_Chr1g0184031 47.917 96 41 3 93 179 81 176 5.45e-21 87.4
Msa0556150 MtrunA17_Chr4g0026931 51.020 98 37 4 93 179 128 225 7.51e-21 88.2
Msa0556150 MtrunA17_Chr3g0137174 61.290 62 24 0 91 152 3 64 8.00e-21 86.3
Msa0556150 MtrunA17_Chr2g0324131 67.797 59 19 0 94 152 216 274 9.18e-21 89.7
Msa0556150 MtrunA17_Chr1g0196871 57.746 71 29 1 84 153 4 74 1.01e-20 83.6
Msa0556150 MtrunA17_Chr6g0453661 48.913 92 46 1 90 180 32 123 1.49e-20 89.4
Msa0556150 MtrunA17_Chr3g0140161 39.200 125 56 3 96 204 43 163 4.13e-20 84.3
Msa0556150 MtrunA17_Chr7g0217991 60.317 63 25 0 89 151 35 97 4.93e-20 88.2
Msa0556150 MtrunA17_Chr1g0184011 48.352 91 38 3 98 179 86 176 5.13e-20 85.1
Msa0556150 MtrunA17_Chr1g0189941 62.500 56 21 0 96 151 24 79 8.00e-20 83.2
Msa0556150 MtrunA17_Chr6g0461941 67.123 73 24 0 93 165 17 89 8.78e-20 84.0
Msa0556150 MtrunA17_Chr5g0401871 54.098 61 28 0 92 152 21 81 1.01e-19 83.2
Msa0556150 MtrunA17_Chr1g0184071 45.918 98 44 3 91 179 64 161 1.14e-19 82.8
Msa0556150 MtrunA17_Chr5g0412641 54.545 77 29 1 95 171 45 115 1.18e-19 86.3
Msa0556150 MtrunA17_Chr1g0184061 50.538 93 42 3 93 181 74 166 1.20e-19 84.0
Msa0556150 MtrunA17_Chr4g0066931 53.333 75 34 1 82 155 38 112 1.35e-19 85.9
Msa0556150 MtrunA17_Chr7g0261181 68.750 64 19 1 90 152 7 70 1.63e-19 81.3
Msa0556150 MtrunA17_Chr4g0023411 58.333 72 23 1 96 160 65 136 2.12e-19 82.8
Msa0556150 MtrunA17_Chr4g0055951 61.404 57 22 0 96 152 74 130 2.22e-19 84.0
Msa0556150 MtrunA17_Chr1g0186681 68.333 60 17 1 95 152 18 77 2.44e-19 80.9
Msa0556150 MtrunA17_Chr8g0340311 57.143 63 27 0 96 158 47 109 2.63e-19 82.8
Msa0556150 MtrunA17_Chr1g0183961 74.576 59 14 1 95 152 26 84 3.59e-19 80.9
Msa0556150 MtrunA17_Chr8g0378811 54.795 73 30 1 82 151 38 110 3.85e-19 83.6
Msa0556150 MtrunA17_Chr8g0345531 64.151 53 19 0 90 142 110 162 4.26e-19 84.7
Msa0556150 MtrunA17_Chr5g0399441 55.556 63 28 0 96 158 28 90 5.54e-19 81.3
Msa0556150 MtrunA17_Chr8g0334801 46.988 83 37 1 83 158 32 114 6.82e-19 81.6
Msa0556150 MtrunA17_Chr4g0062551 56.716 67 29 0 90 156 47 113 8.23e-19 79.7
Msa0556150 MtrunA17_Chr1g0150691 57.627 59 25 0 94 152 20 78 1.01e-18 81.6
Msa0556150 MtrunA17_Chr1g0150671 57.627 59 25 0 94 152 44 102 1.04e-18 82.8
Msa0556150 MtrunA17_Chr1g0150661 53.968 63 29 0 90 152 29 91 1.31e-18 81.3
Msa0556150 MtrunA17_Chr8g0350701 54.412 68 31 0 87 154 18 85 1.37e-18 82.8
Msa0556150 MtrunA17_Chr7g0252381 66.667 57 19 0 95 151 41 97 1.48e-18 82.0
Msa0556150 MtrunA17_Chr4g0062161 56.716 67 29 0 90 156 47 113 1.69e-18 80.5
Msa0556150 MtrunA17_Chr6g0461271 54.545 66 30 0 86 151 23 88 2.26e-18 82.0
Msa0556150 MtrunA17_Chr1g0150631 57.627 59 25 0 94 152 36 94 2.96e-18 80.5
Msa0556150 MtrunA17_Chr7g0275841 56.140 57 25 0 96 152 28 84 3.26e-18 79.0
Msa0556150 MtrunA17_Chr7g0253424 54.545 66 30 0 86 151 29 94 3.59e-18 80.9
Msa0556150 MtrunA17_Chr7g0243431 60.317 63 18 1 96 151 78 140 3.73e-18 82.8
Msa0556150 MtrunA17_Chr1g0183931 65.753 73 22 2 93 162 98 170 5.59e-18 80.1
Msa0556150 MtrunA17_Chr7g0261171 65.333 75 23 2 90 161 79 153 1.56e-17 78.6
Msa0556150 MtrunA17_Chr7g0265851 59.649 57 23 0 96 152 24 80 2.51e-17 77.4
Msa0556150 MtrunA17_Chr8g0346741 51.429 70 32 1 96 165 39 106 3.63e-17 76.3
Msa0556150 MtrunA17_Chr4g0017851 46.269 67 36 0 86 152 108 174 8.33e-17 77.8
Msa0556150 MtrunA17_Chr1g0186741 46.667 120 43 5 91 199 68 177 1.02e-16 75.9
Msa0556150 MtrunA17_Chr1g0170471 65.385 52 17 1 103 153 90 141 1.08e-16 75.1
Msa0556150 MtrunA17_Chr7g0261201 45.000 120 41 4 93 187 95 214 2.02e-16 75.5
Msa0556150 MtrunA17_Chr1g0200931 47.945 73 35 1 87 156 14 86 2.07e-16 73.2
Msa0556150 MtrunA17_Chr1g0167781 55.696 79 32 2 86 161 72 150 2.18e-16 75.1
Msa0556150 MtrunA17_Chr1g0209891 54.386 57 26 0 87 143 45 101 2.21e-16 76.6
Msa0556150 MtrunA17_Chr3g0083501 62.000 50 19 0 103 152 2 51 2.57e-16 71.2
Msa0556150 MtrunA17_Chr1g0203861 49.367 79 32 1 81 151 21 99 3.02e-16 74.3
Msa0556150 MtrunA17_Chr1g0146191 55.556 81 31 1 83 158 29 109 3.22e-16 75.5
Msa0556150 MtrunA17_Chr3g0136551 50.820 61 30 0 91 151 60 120 3.94e-16 75.5
Msa0556150 MtrunA17_Chr2g0301191 56.140 57 25 0 96 152 19 75 4.91e-16 73.9
Msa0556150 MtrunA17_Chr6g0473931 56.716 67 28 1 86 151 22 88 4.92e-16 73.9
Msa0556150 MtrunA17_Chr1g0205961 53.571 56 26 0 87 142 106 161 5.45e-16 75.9
Msa0556150 MtrunA17_Chr6g0473881 53.731 67 30 1 86 151 99 165 9.29e-16 74.7
Msa0556150 MtrunA17_Chr6g0473941 55.224 67 29 1 86 151 22 88 9.72e-16 73.2
Msa0556150 MtrunA17_Chr8g0345551 55.556 54 24 0 89 142 110 163 1.66e-15 74.7
Msa0556150 MtrunA17_Chr2g0301171 54.386 57 26 0 96 152 19 75 1.85e-15 72.4
Msa0556150 MtrunA17_Chr6g0473741 53.731 67 30 1 86 151 55 121 1.93e-15 72.8
Msa0556150 MtrunA17_Chr3g0142081 62.500 64 24 0 96 159 39 102 4.54e-15 71.6
Msa0556150 MtrunA17_Chr1g0149331 63.934 61 22 0 93 153 4 64 4.99e-15 70.9
Msa0556150 MtrunA17_Chr6g0473781 53.731 67 30 1 86 151 46 112 6.09e-15 71.2
Msa0556150 MtrunA17_Chr6g0473981 52.778 72 25 1 89 151 38 109 6.36e-15 71.6
Msa0556150 MtrunA17_Chr2g0301181 45.205 73 31 1 96 168 19 82 6.76e-15 71.2
Msa0556150 MtrunA17_Chr6g0486711 60.317 63 25 0 96 158 49 111 8.21e-15 71.2
Msa0556150 MtrunA17_Chr6g0464581 82.000 50 9 0 103 152 187 236 8.51e-15 72.8
Msa0556150 MtrunA17_Chr1g0201671 82.000 50 9 0 103 152 146 195 9.40e-15 72.4
Msa0556150 MtrunA17_Chr6g0473961 51.389 72 26 1 89 151 38 109 1.06e-14 70.5
Msa0556150 MtrunA17_Chr6g0473861 57.143 56 24 0 96 151 63 118 1.15e-14 71.2
Msa0556150 MtrunA17_Chr5g0396191 58.730 63 26 0 96 158 11 73 1.23e-14 69.7
Msa0556150 MtrunA17_Chr6g0473971 50.000 72 27 1 89 151 38 109 1.34e-14 70.9
Msa0556150 MtrunA17_Chr5g0396171 50.000 62 31 0 98 159 26 87 1.34e-14 67.4
Msa0556150 MtrunA17_Chr1g0155751 64.912 57 20 0 96 152 39 95 1.52e-14 70.9
Msa0556150 MtrunA17_Chr7g0225131 54.237 59 24 1 94 152 27 82 1.83e-14 67.0
Msa0556150 MtrunA17_Chr6g0473771 53.571 56 26 0 96 151 43 98 2.15e-14 67.4
Msa0556150 MtrunA17_Chr3g0137831 66.667 60 20 0 94 153 6 65 2.41e-14 69.3
Msa0556150 MtrunA17_Chr5g0438841 39.216 102 62 0 95 196 15 116 2.83e-14 68.6
Msa0556150 MtrunA17_Chr4g0057241 56.140 57 24 1 96 152 15 70 5.70e-14 67.4
Msa0556150 MtrunA17_Chr6g0474001 57.143 56 24 0 96 151 54 109 1.27e-13 68.2
Msa0556150 MtrunA17_Chr5g0396301 52.459 61 27 1 94 152 16 76 1.70e-13 66.2
Msa0556150 MtrunA17_Chr5g0396741 68.333 60 19 0 93 152 114 173 3.29e-13 67.8
Msa0556150 MtrunA17_Chr3g0136541 51.852 54 26 0 98 151 42 95 5.06e-13 66.2
Msa0556150 MtrunA17_Chr5g0423811 50.000 68 33 1 95 161 87 154 1.02e-12 66.2
Msa0556150 MtrunA17_Chr3g0114761 52.941 68 30 1 92 157 21 88 2.27e-12 64.3
Msa0556150 MtrunA17_Chr5g0424051 58.065 62 25 1 93 153 93 154 4.61e-12 64.3
Msa0556150 MtrunA17_Chr3g0108241 50.685 73 35 1 96 167 115 187 5.20e-12 63.5
Msa0556150 MtrunA17_Chr5g0422501 46.667 75 37 2 89 162 100 172 5.73e-12 64.3
Msa0556150 MtrunA17_Chr6g0473791 53.061 49 23 0 96 144 57 105 2.15e-11 60.1
Msa0556150 MtrunA17_Chr1g0203831 58.621 58 23 1 95 152 56 112 2.70e-11 60.8
Msa0556150 MtrunA17_Chr5g0398061 43.750 80 30 2 87 151 31 110 3.31e-11 60.8
Msa0556150 MtrunA17_Chr5g0398091 50.000 62 25 1 96 151 54 115 3.41e-11 60.8
Msa0556150 MtrunA17_Chr2g0321071 49.153 59 28 2 96 152 47 105 3.68e-11 60.8
Msa0556150 MtrunA17_Chr1g0198661 50.000 62 29 1 89 150 57 116 4.47e-11 61.6
Msa0556150 MtrunA17_Chr5g0400871 35.385 130 74 4 91 218 350 471 5.35e-11 61.6
Msa0556150 MtrunA17_Chr4g0002771 63.934 61 22 0 93 153 74 134 8.20e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556150 AT4G34410.1 45.902 183 58 3 8 155 19 195 8.56e-39 135
Msa0556150 AT5G67000.1 42.958 142 67 2 9 150 48 175 6.09e-32 115
Msa0556150 AT5G61890.1 40.523 153 55 4 8 152 22 146 5.60e-30 112
Msa0556150 AT2G47520.1 73.239 71 18 1 82 152 37 106 6.59e-30 109
Msa0556150 AT2G33710.1 80.000 60 12 0 93 152 67 126 1.08e-29 110
Msa0556150 AT2G33710.2 80.000 60 12 0 93 152 67 126 1.28e-29 110
Msa0556150 AT4G11140.1 81.356 59 11 0 94 152 85 143 3.42e-29 111
Msa0556150 AT5G13330.1 76.667 60 14 0 93 152 36 95 3.79e-29 108
Msa0556150 AT3G16770.1 43.506 154 66 5 88 222 71 222 6.88e-29 109
Msa0556150 AT4G27950.1 59.091 88 28 1 93 180 115 194 2.96e-27 107
Msa0556150 AT4G23750.2 57.471 87 18 1 84 151 91 177 8.38e-27 105
Msa0556150 AT4G23750.1 57.471 87 18 1 84 151 91 177 8.38e-27 105
Msa0556150 AT1G72360.1 67.188 64 21 0 89 152 18 81 2.35e-26 101
Msa0556150 AT5G44210.1 70.149 67 20 0 91 157 28 94 3.04e-26 101
Msa0556150 AT1G72360.2 67.188 64 21 0 89 152 69 132 3.54e-26 102
Msa0556150 AT1G72360.3 67.188 64 21 0 89 152 67 130 3.98e-26 102
Msa0556150 AT3G15210.1 54.255 94 26 2 95 171 24 117 5.35e-26 101
Msa0556150 AT1G03800.1 62.857 70 26 0 85 154 42 111 5.85e-26 101
Msa0556150 AT1G28370.2 74.138 58 15 0 95 152 57 114 4.52e-25 98.2
Msa0556150 AT5G53290.1 73.333 60 16 0 94 153 123 182 6.29e-25 100
Msa0556150 AT1G28370.1 74.138 58 15 0 95 152 19 76 8.03e-25 96.7
Msa0556150 AT5G51190.1 66.667 66 21 1 89 153 65 130 1.59e-24 97.4
Msa0556150 AT5G47230.1 63.750 80 22 2 81 153 135 214 2.02e-24 98.6
Msa0556150 AT3G61630.1 74.138 58 15 0 94 151 103 160 4.64e-24 98.2
Msa0556150 AT5G50080.2 49.655 145 57 3 20 152 2 142 1.03e-23 95.5
Msa0556150 AT1G43160.1 51.880 133 46 5 22 152 1 117 1.60e-23 94.0
Msa0556150 AT5G47220.1 73.770 61 15 1 94 153 115 175 2.05e-23 94.7
Msa0556150 AT1G50640.1 69.492 59 18 0 95 153 27 85 2.66e-23 94.0
Msa0556150 AT2G20350.1 44.444 135 59 2 13 147 20 138 2.78e-23 92.4
Msa0556150 AT2G22200.1 62.319 69 25 1 91 158 66 134 3.11e-23 94.7
Msa0556150 AT4G17500.1 73.770 61 15 1 94 153 146 206 3.18e-23 94.7
Msa0556150 AT5G50080.1 75.000 72 14 1 81 152 66 133 3.39e-23 93.6
Msa0556150 AT4G39780.1 66.154 65 22 0 88 152 85 149 4.57e-23 94.7
Msa0556150 AT4G17490.1 72.581 62 16 1 93 153 134 195 5.70e-23 94.4
Msa0556150 AT5G07310.1 78.333 60 13 0 93 152 89 148 5.95e-23 94.0
Msa0556150 AT5G43410.1 74.576 59 14 1 95 152 14 72 8.90e-23 90.1
Msa0556150 AT1G22985.1 67.606 71 18 2 93 158 72 142 9.15e-23 90.9
Msa0556150 AT1G22190.1 67.742 62 20 0 91 152 78 139 9.45e-23 93.6
Msa0556150 AT1G36060.1 65.625 64 22 0 91 154 138 201 1.02e-22 94.4
Msa0556150 AT4G13620.1 65.672 67 23 0 94 160 230 296 1.04e-22 95.5
Msa0556150 AT3G20310.1 67.797 59 19 0 95 153 26 84 1.22e-22 92.8
Msa0556150 AT2G31230.1 59.524 84 31 2 82 162 72 155 1.64e-22 92.4
Msa0556150 AT1G15360.1 68.333 60 19 0 94 153 5 64 1.64e-22 91.3
Msa0556150 AT1G15360.2 68.333 60 19 0 94 153 5 64 1.64e-22 91.3
Msa0556150 AT2G20880.1 61.842 76 26 1 92 167 183 255 1.90e-22 94.0
Msa0556150 AT3G23240.1 46.218 119 45 5 90 199 76 184 2.06e-22 91.7
Msa0556150 AT1G78080.1 67.742 62 20 0 91 152 147 208 3.11e-22 93.6
Msa0556150 AT5G61600.1 65.574 61 20 1 94 153 86 146 3.37e-22 91.7
Msa0556150 AT2G44840.1 63.636 66 23 1 95 159 91 156 3.39e-22 91.3
Msa0556150 AT5G65130.2 38.889 144 67 2 94 220 111 250 4.10e-22 92.0
Msa0556150 AT5G65130.1 38.889 144 67 2 94 220 109 248 4.14e-22 92.0
Msa0556150 AT4G28140.1 68.852 61 19 0 92 152 139 199 5.41e-22 92.0
Msa0556150 AT1G71130.1 63.380 71 21 1 88 153 71 141 8.59e-22 88.6
Msa0556150 AT3G23230.1 71.186 59 16 1 95 152 19 77 8.99e-22 87.8
Msa0556150 AT5G25190.1 61.290 62 24 0 91 152 3 64 1.35e-21 88.6
Msa0556150 AT5G05410.2 66.129 62 21 0 96 157 79 140 1.86e-21 90.9
Msa0556150 AT1G28360.1 68.966 58 18 0 95 152 11 68 1.95e-21 88.2
Msa0556150 AT4G32800.1 51.948 77 37 0 82 158 5 81 2.18e-21 89.0
Msa0556150 AT2G23340.1 57.812 64 27 0 89 152 21 84 2.53e-21 87.8
Msa0556150 AT5G05410.1 66.129 62 21 0 96 157 79 140 2.64e-21 90.9
Msa0556150 AT5G25390.2 63.934 61 22 0 94 154 5 65 2.88e-21 87.8
Msa0556150 AT4G06746.1 59.322 59 24 0 94 152 34 92 3.90e-21 86.7
Msa0556150 AT1G75490.1 55.000 80 29 2 96 171 42 118 4.27e-21 87.8
Msa0556150 AT2G46310.1 61.765 68 26 0 84 151 87 154 4.51e-21 89.7
Msa0556150 AT5G64750.1 78.000 50 11 0 103 152 192 241 5.21e-21 90.9
Msa0556150 AT4G36900.1 55.556 63 28 0 90 152 24 86 7.24e-21 87.0
Msa0556150 AT5G11590.1 51.220 82 35 1 82 158 32 113 7.30e-21 87.8
Msa0556150 AT5G07580.1 63.934 61 21 1 94 153 108 168 1.20e-20 86.7
Msa0556150 AT1G46768.3 60.000 60 24 0 93 152 28 87 1.39e-20 84.7
Msa0556150 AT1G46768.1 60.000 60 24 0 93 152 28 87 1.40e-20 85.1
Msa0556150 AT1G46768.2 60.000 60 24 0 93 152 28 87 1.40e-20 85.1
Msa0556150 AT3G57600.1 61.667 60 23 0 95 154 27 86 1.55e-20 87.8
Msa0556150 AT5G13910.1 54.054 74 34 0 82 155 6 79 2.17e-20 86.3
Msa0556150 AT5G67010.1 37.500 120 55 3 13 129 21 123 2.68e-20 84.7
Msa0556150 AT4G18450.1 69.355 62 17 2 94 153 108 169 2.95e-20 87.4
Msa0556150 AT1G71450.1 51.948 77 37 0 82 158 10 86 4.28e-20 84.7
Msa0556150 AT3G16280.1 63.158 57 21 0 96 152 61 117 4.76e-20 85.9
Msa0556150 AT5G67190.1 37.719 114 66 1 90 198 15 128 5.06e-20 84.3
Msa0556150 AT3G16280.2 63.158 57 21 0 96 152 79 135 5.25e-20 85.9
Msa0556150 AT2G25820.1 63.158 57 21 0 96 152 26 82 7.61e-20 85.1
Msa0556150 AT5G25810.1 55.556 72 30 1 83 152 21 92 8.02e-20 84.7
Msa0556150 AT5G19790.1 56.522 69 30 0 83 151 9 77 8.47e-20 85.5
Msa0556150 AT1G74930.1 33.526 173 81 5 83 230 8 171 9.67e-20 84.0
Msa0556150 AT1G21910.1 57.895 57 24 0 96 152 50 106 9.87e-20 84.7
Msa0556150 AT2G35700.1 61.404 57 22 0 96 152 45 101 9.87e-20 84.0
Msa0556150 AT4G16750.1 53.623 69 32 0 84 152 28 96 1.11e-19 83.6
Msa0556150 AT5G25390.1 62.295 61 20 1 94 154 5 62 1.32e-19 83.6
Msa0556150 AT2G44940.1 63.158 57 21 0 96 152 100 156 1.35e-19 85.5
Msa0556150 AT1G12980.1 66.667 57 19 0 95 151 56 112 1.62e-19 85.9
Msa0556150 AT3G50260.1 55.385 65 28 1 88 152 14 77 1.63e-19 82.4
Msa0556150 AT3G11020.1 64.912 57 20 0 96 152 78 134 2.52e-19 85.5
Msa0556150 AT5G18560.1 54.545 66 30 0 86 151 45 110 5.47e-19 84.7
Msa0556150 AT3G60490.1 61.404 57 22 0 96 152 71 127 6.26e-19 83.2
Msa0556150 AT5G18450.1 64.286 56 20 0 96 151 34 89 1.39e-18 83.2
Msa0556150 AT5G21960.1 51.316 76 28 1 92 167 3 69 1.73e-18 81.3
Msa0556150 AT1G24590.1 66.667 57 19 0 95 151 57 113 1.73e-18 82.8
Msa0556150 AT2G40340.2 59.322 59 24 0 96 154 14 72 2.44e-18 82.0
Msa0556150 AT2G40340.5 59.322 59 24 0 96 154 14 72 2.44e-18 82.0
Msa0556150 AT2G40340.4 59.322 59 24 0 96 154 14 72 2.44e-18 82.0
Msa0556150 AT1G28160.1 48.980 98 42 2 95 188 38 131 2.54e-18 81.3
Msa0556150 AT1G06160.1 54.444 90 31 3 94 173 80 169 3.20e-18 80.9
Msa0556150 AT1G01250.1 50.725 69 31 1 96 164 45 110 3.59e-18 79.7
Msa0556150 AT1G12890.1 57.746 71 26 1 85 151 6 76 4.01e-18 80.1
Msa0556150 AT2G40350.2 57.627 59 25 0 96 154 74 132 6.49e-18 78.2
Msa0556150 AT2G40350.1 57.627 59 25 0 96 154 67 125 7.81e-18 77.8
Msa0556150 AT2G40340.6 59.322 59 24 0 96 154 79 137 9.24e-18 81.3
Msa0556150 AT2G40340.1 59.322 59 24 0 96 154 72 130 9.73e-18 81.3
Msa0556150 AT2G40340.3 59.322 59 24 0 96 154 72 130 1.10e-17 80.5
Msa0556150 AT3G14230.3 68.056 72 22 1 82 152 108 179 1.32e-17 80.9
Msa0556150 AT3G14230.2 68.056 72 22 1 82 152 109 180 1.35e-17 80.9
Msa0556150 AT1G53910.1 63.514 74 25 1 86 159 115 186 1.38e-17 80.9
Msa0556150 AT1G53910.2 63.514 74 25 1 86 159 115 186 1.38e-17 80.9
Msa0556150 AT3G14230.1 68.056 72 22 1 82 152 113 184 1.40e-17 80.9
Msa0556150 AT1G53910.3 67.143 70 21 1 90 159 117 184 1.49e-17 80.9
Msa0556150 AT4G25470.1 58.209 67 27 1 86 151 40 106 1.49e-17 78.6
Msa0556150 AT4G25490.1 56.716 67 28 1 86 151 37 103 2.74e-17 77.8
Msa0556150 AT1G68550.1 68.000 50 16 0 93 142 110 159 4.95e-17 79.0
Msa0556150 AT1G68550.2 68.000 50 16 0 93 142 110 159 4.95e-17 79.0
Msa0556150 AT1G19210.1 55.000 60 27 0 93 152 9 68 6.04e-17 76.3
Msa0556150 AT3G23220.1 67.164 67 21 1 95 160 13 79 6.76e-17 75.1
Msa0556150 AT4G31060.1 51.562 64 31 0 89 152 20 83 7.74e-17 76.3
Msa0556150 AT4G25480.1 55.224 67 29 1 86 151 40 106 1.18e-16 76.3
Msa0556150 AT2G36450.1 60.345 58 22 1 96 152 15 72 1.44e-16 75.1
Msa0556150 AT1G77200.1 58.824 68 28 0 85 152 32 99 1.45e-16 76.6
Msa0556150 AT5G51990.1 55.224 67 29 1 86 151 43 109 8.67e-16 73.9
Msa0556150 AT5G61590.1 62.500 72 24 2 85 153 94 165 1.34e-15 73.2
Msa0556150 AT1G04370.1 72.881 59 15 1 95 152 19 77 1.93e-15 70.9
Msa0556150 AT1G53170.1 61.111 72 24 1 83 154 22 89 2.06e-15 72.0
Msa0556150 AT2G40220.1 66.667 60 20 0 92 151 51 110 2.80e-15 73.9
Msa0556150 AT1G22810.1 41.379 87 48 2 84 167 2 88 8.39e-15 69.7
Msa0556150 AT5G11190.1 55.263 76 29 1 94 164 5 80 1.06e-14 70.5
Msa0556150 AT1G64380.1 56.410 78 27 1 91 168 131 201 2.26e-14 71.6
Msa0556150 AT1G77640.1 50.649 77 35 1 90 163 37 113 3.04e-14 70.1
Msa0556150 AT2G38340.1 59.091 66 19 1 95 152 69 134 7.19e-14 68.9
Msa0556150 AT1G63030.2 47.297 74 30 1 87 151 12 85 2.17e-13 66.6
Msa0556150 AT1G63030.1 47.297 74 30 1 87 151 12 85 2.17e-13 66.6
Msa0556150 AT3G25890.1 64.444 45 16 0 98 142 133 177 3.00e-13 68.2
Msa0556150 AT3G25890.2 64.444 45 16 0 98 142 133 177 3.00e-13 68.2
Msa0556150 AT1G71520.1 39.326 89 49 2 84 167 2 90 3.74e-13 65.1
Msa0556150 AT1G12610.1 43.243 74 33 1 87 151 12 85 1.39e-12 65.1
Msa0556150 AT1G49120.1 61.702 47 18 0 96 142 87 133 1.67e-12 66.2
Msa0556150 AT1G68840.2 33.333 138 71 3 89 226 58 174 2.48e-12 65.9
Msa0556150 AT1G68840.1 33.333 138 71 3 89 226 58 174 2.48e-12 65.9
Msa0556150 AT1G33760.1 59.016 61 24 1 96 155 20 80 2.83e-12 63.5
Msa0556150 AT1G44830.1 52.941 68 31 1 94 160 33 100 1.86e-11 62.0
Msa0556150 AT1G80580.1 42.149 121 52 4 61 163 66 186 5.87e-11 61.2

Find 78 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAATTTATGAGGTTTA+TGG 0.148041 4_1:+54235822 Msa0556150:CDS
CTGGAGATTCTTCTGGTTCT+AGG 0.189683 4_1:+54235851 Msa0556150:CDS
ATTGAAACAACGACGGGGTT+TGG 0.291623 4_1:+54235751 Msa0556150:CDS
CTGCTTCCGATGGTGGAATC+CGG 0.331036 4_1:-54235334 None:intergenic
TTGAAACAACGACGGGGTTT+GGG 0.339444 4_1:+54235752 Msa0556150:CDS
GACGGGGTTTGGGAATAATA+AGG 0.342374 4_1:+54235762 Msa0556150:CDS
CGAGACGTGCGGTCCGTGTT+TGG 0.360884 4_1:+54235539 Msa0556150:CDS
TGCAACATAGCAGGATGTTT+AGG 0.364927 4_1:+54235406 Msa0556150:CDS
GTGGTTCCTCAACATTCTTA+AGG 0.365826 4_1:-54235669 None:intergenic
TGGTTCCTCAACATTCTTAA+GGG 0.370196 4_1:-54235668 None:intergenic
CCGCAGGTTTCCATGTTTGT+TGG 0.411439 4_1:-54235379 None:intergenic
ATTTCTTCTCTGAAGAGAAC+AGG 0.411680 4_1:+54235434 Msa0556150:CDS
AGCTTCCTCCGCCGTGGTAA+AGG 0.419719 4_1:-54235569 None:intergenic
AGCCGGAGACTACGTTGGTT+AGG 0.429315 4_1:-54235273 None:intergenic
TGAGAAGGAACAACCACTTC+TGG 0.432213 4_1:-54235691 None:intergenic
CAGGTTTCCATGTTTGTTGG+TGG 0.433790 4_1:-54235376 None:intergenic
GGTAGATGAGAAGGAGGAAG+AGG 0.439044 4_1:-54235209 None:intergenic
GCCGGAGACTACGTTGGTTA+GGG 0.457969 4_1:-54235272 None:intergenic
GATTCTTCTGGTTCTAGGAC+AGG 0.461736 4_1:+54235856 Msa0556150:CDS
CCATCGAGTTCCGTGGGCCG+AGG 0.463560 4_1:+54235614 Msa0556150:CDS
GGTGAGAGTGGTAGATGAGA+AGG 0.470589 4_1:-54235218 None:intergenic
GAGAGTGGTAGATGAGAAGG+AGG 0.480674 4_1:-54235215 None:intergenic
TGCTTCCGATGGTGGAATCC+GGG 0.490588 4_1:-54235333 None:intergenic
GGGTAATGAGTTTGCAGTTG+AGG 0.495374 4_1:-54235299 None:intergenic
GGCGGCATTGTCATAAGCTC+TGG 0.501230 4_1:-54235593 None:intergenic
AAACACGGACCGCACGTCTC+GGG 0.502410 4_1:-54235537 None:intergenic
TTCTATGCTGCTGCTTCCGA+TGG 0.505220 4_1:-54235344 None:intergenic
TGCTATGTTGCAATCACCGC+AGG 0.505269 4_1:-54235395 None:intergenic
TGCGGTGATTGCAACATAGC+AGG 0.507840 4_1:+54235397 Msa0556150:CDS
GAGGAGTGAGGCAGAGACCA+TGG 0.509182 4_1:+54235488 Msa0556150:CDS
CGTGCGGTCCGTGTTTGGCT+CGG 0.511971 4_1:+54235544 Msa0556150:CDS
GTTTGCAGTTGAGGTGGAGC+CGG 0.512170 4_1:-54235290 None:intergenic
TATGCTGCTGCTTCCGATGG+TGG 0.512737 4_1:-54235341 None:intergenic
AGGAGTGAGGCAGAGACCAT+GGG 0.517170 4_1:+54235489 Msa0556150:CDS
TGTTCCTTCTCAGCATGTAA+AGG 0.519086 4_1:+54235702 Msa0556150:CDS
GAATCCGGGAGATAAACTTC+GGG 0.523804 4_1:-54235319 None:intergenic
TATCTCCCGGATTCCACCAT+CGG 0.528321 4_1:+54235328 Msa0556150:CDS
AATGACGGATTGTTCTTGAT+CGG 0.533790 4_1:-54235242 None:intergenic
CAAACACGGACCGCACGTCT+CGG 0.535999 4_1:-54235538 None:intergenic
GGAATCCGGGAGATAAACTT+CGG 0.536696 4_1:-54235320 None:intergenic
ATTACCCGAAGTTTATCTCC+CGG 0.537332 4_1:+54235315 Msa0556150:CDS
AACAAGTGGAAAATTGAGCT+TGG 0.538551 4_1:-54235638 None:intergenic
AATGCCGCCATCGAGTTCCG+TGG 0.540528 4_1:+54235607 Msa0556150:CDS
TGAGCTTGGCCCTCGGCCCA+CGG 0.547368 4_1:-54235624 None:intergenic
TCCTCCTTTACATGCTGAGA+AGG 0.552754 4_1:-54235706 None:intergenic
ATGCAAATTGAAACAACGAC+GGG 0.553453 4_1:+54235745 Msa0556150:CDS
GGAAAATTGAGCTTGGCCCT+CGG 0.559126 4_1:-54235631 None:intergenic
CATCGAGTTCCGTGGGCCGA+GGG 0.559501 4_1:+54235615 Msa0556150:CDS
TAATGAGTTTGCAGTTGAGG+TGG 0.566894 4_1:-54235296 None:intergenic
GGTTAGGGCGGTTACAATGA+CGG 0.567733 4_1:-54235257 None:intergenic
GATGATTCCACCAACAAACA+TGG 0.570694 4_1:+54235369 Msa0556150:CDS
TTCTTGATCGGAGGTGAGAG+TGG 0.585977 4_1:-54235230 None:intergenic
CCTCGGCCCACGGAACTCGA+TGG 0.586210 4_1:-54235614 None:intergenic
CGGAACCTTTACCACGGCGG+AGG 0.586411 4_1:+54235564 Msa0556150:CDS
TGTTGAGGAACCACCAGAAG+TGG 0.587679 4_1:+54235678 Msa0556150:CDS
ATGCCGCCATCGAGTTCCGT+GGG 0.592164 4_1:+54235608 Msa0556150:CDS
GACGGATTGTTCTTGATCGG+AGG 0.593092 4_1:-54235239 None:intergenic
GCCCTAACCAACGTAGTCTC+CGG 0.599329 4_1:+54235271 Msa0556150:CDS
TTAAGGGATTCATCAACAAG+TGG 0.600065 4_1:-54235652 None:intergenic
TGAATCCCTTAAGAATGTTG+AGG 0.607468 4_1:+54235663 Msa0556150:CDS
ATTCTTCTGGTTCTAGGACA+GGG 0.611454 4_1:+54235857 Msa0556150:CDS
TCCTTCTCAGCATGTAAAGG+AGG 0.623355 4_1:+54235705 Msa0556150:CDS
TCGGAAGCAGCAGCATAGAA+CGG 0.627150 4_1:+54235347 Msa0556150:CDS
GGAGTGAGGCAGAGACCATG+GGG 0.630795 4_1:+54235490 Msa0556150:CDS
TCTGGCAGCTTCCTCCGCCG+TGG 0.634042 4_1:-54235575 None:intergenic
CGGCCCACGGAACTCGATGG+CGG 0.636787 4_1:-54235611 None:intergenic
TAAAGGTTCCGAGCCAAACA+CGG 0.637276 4_1:-54235552 None:intergenic
GAAGGAACAACCACTTCTGG+TGG 0.647287 4_1:-54235688 None:intergenic
GATTCGTGACCCGAGACGTG+CGG 0.666469 4_1:+54235528 Msa0556150:CDS
AAAAGAAGTATAGAGGAGTG+AGG 0.676652 4_1:+54235476 Msa0556150:CDS
TTGGCTCGGAACCTTTACCA+CGG 0.679817 4_1:+54235558 Msa0556150:CDS
GGAGACTACGTTGGTTAGGG+CGG 0.680648 4_1:-54235269 None:intergenic
GATGCAAATTGAAACAACGA+CGG 0.695103 4_1:+54235744 Msa0556150:CDS
GGTGGAGCCGGAGACTACGT+TGG 0.701148 4_1:-54235278 None:intergenic
CCAACAAACATGGAAACCTG+CGG 0.705953 4_1:+54235379 Msa0556150:CDS
GAGTGAGGCAGAGACCATGG+GGG 0.735515 4_1:+54235491 Msa0556150:CDS
GCTCGGAACCTTTACCACGG+CGG 0.739922 4_1:+54235561 Msa0556150:CDS
TGCAAATTGAAACAACGACG+GGG 0.740336 4_1:+54235746 Msa0556150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGGATTGTGATTTTT+TGG + chr4_1:54235777-54235796 Msa0556150:CDS 20.0%
!!! TGATTTTTTGGATAGTATTG+AGG + chr4_1:54235789-54235808 Msa0556150:CDS 25.0%
!! CTGATTTTCAACAATTTATG+AGG + chr4_1:54235815-54235834 Msa0556150:CDS 25.0%
! TCAACAATTTATGAGGTTTA+TGG + chr4_1:54235822-54235841 Msa0556150:CDS 25.0%
! AGAGCTAAAAAGAAGTATAG+AGG + chr4_1:54235469-54235488 Msa0556150:CDS 30.0%
! ATGAGGTTTATGGAATTTTC+TGG + chr4_1:54235832-54235851 Msa0556150:CDS 30.0%
!! AATGACGGATTGTTCTTGAT+CGG - chr4_1:54235245-54235264 None:intergenic 35.0%
! ATTTCTTCTCTGAAGAGAAC+AGG + chr4_1:54235434-54235453 Msa0556150:CDS 35.0%
! AAAAGAAGTATAGAGGAGTG+AGG + chr4_1:54235476-54235495 Msa0556150:CDS 35.0%
AACAAGTGGAAAATTGAGCT+TGG - chr4_1:54235641-54235660 None:intergenic 35.0%
TTAAGGGATTCATCAACAAG+TGG - chr4_1:54235655-54235674 None:intergenic 35.0%
TGAATCCCTTAAGAATGTTG+AGG + chr4_1:54235663-54235682 Msa0556150:CDS 35.0%
TGGTTCCTCAACATTCTTAA+GGG - chr4_1:54235671-54235690 None:intergenic 35.0%
GATGCAAATTGAAACAACGA+CGG + chr4_1:54235744-54235763 Msa0556150:CDS 35.0%
ATGCAAATTGAAACAACGAC+GGG + chr4_1:54235745-54235764 Msa0556150:CDS 35.0%
!! GAATTTTCTGGAGATTCTTC+TGG + chr4_1:54235844-54235863 Msa0556150:CDS 35.0%
TAATGAGTTTGCAGTTGAGG+TGG - chr4_1:54235299-54235318 None:intergenic 40.0%
ATTACCCGAAGTTTATCTCC+CGG + chr4_1:54235315-54235334 Msa0556150:CDS 40.0%
GATGATTCCACCAACAAACA+TGG + chr4_1:54235369-54235388 Msa0556150:CDS 40.0%
TGCAACATAGCAGGATGTTT+AGG + chr4_1:54235406-54235425 Msa0556150:CDS 40.0%
GTGGTTCCTCAACATTCTTA+AGG - chr4_1:54235672-54235691 None:intergenic 40.0%
TGTTCCTTCTCAGCATGTAA+AGG + chr4_1:54235702-54235721 Msa0556150:CDS 40.0%
TGCAAATTGAAACAACGACG+GGG + chr4_1:54235746-54235765 Msa0556150:CDS 40.0%
!! ATTCTTCTGGTTCTAGGACA+GGG + chr4_1:54235857-54235876 Msa0556150:CDS 40.0%
GGGTAATGAGTTTGCAGTTG+AGG - chr4_1:54235302-54235321 None:intergenic 45.0%
GAATCCGGGAGATAAACTTC+GGG - chr4_1:54235322-54235341 None:intergenic 45.0%
GGAATCCGGGAGATAAACTT+CGG - chr4_1:54235323-54235342 None:intergenic 45.0%
! CAGGTTTCCATGTTTGTTGG+TGG - chr4_1:54235379-54235398 None:intergenic 45.0%
CCAACAAACATGGAAACCTG+CGG + chr4_1:54235379-54235398 Msa0556150:CDS 45.0%
TAAAGGTTCCGAGCCAAACA+CGG - chr4_1:54235555-54235574 None:intergenic 45.0%
TGAGAAGGAACAACCACTTC+TGG - chr4_1:54235694-54235713 None:intergenic 45.0%
TCCTTCTCAGCATGTAAAGG+AGG + chr4_1:54235705-54235724 Msa0556150:CDS 45.0%
TCCTCCTTTACATGCTGAGA+AGG - chr4_1:54235709-54235728 None:intergenic 45.0%
ATTGAAACAACGACGGGGTT+TGG + chr4_1:54235751-54235770 Msa0556150:CDS 45.0%
TTGAAACAACGACGGGGTTT+GGG + chr4_1:54235752-54235771 Msa0556150:CDS 45.0%
GACGGGGTTTGGGAATAATA+AGG + chr4_1:54235762-54235781 Msa0556150:CDS 45.0%
!! CTGGAGATTCTTCTGGTTCT+AGG + chr4_1:54235851-54235870 Msa0556150:CDS 45.0%
!! GATTCTTCTGGTTCTAGGAC+AGG + chr4_1:54235856-54235875 Msa0556150:CDS 45.0%
GGTAGATGAGAAGGAGGAAG+AGG - chr4_1:54235212-54235231 None:intergenic 50.0%
GAGAGTGGTAGATGAGAAGG+AGG - chr4_1:54235218-54235237 None:intergenic 50.0%
GGTGAGAGTGGTAGATGAGA+AGG - chr4_1:54235221-54235240 None:intergenic 50.0%
TTCTTGATCGGAGGTGAGAG+TGG - chr4_1:54235233-54235252 None:intergenic 50.0%
!! GACGGATTGTTCTTGATCGG+AGG - chr4_1:54235242-54235261 None:intergenic 50.0%
GGTTAGGGCGGTTACAATGA+CGG - chr4_1:54235260-54235279 None:intergenic 50.0%
TATCTCCCGGATTCCACCAT+CGG + chr4_1:54235328-54235347 Msa0556150:CDS 50.0%
! TTCTATGCTGCTGCTTCCGA+TGG - chr4_1:54235347-54235366 None:intergenic 50.0%
TCGGAAGCAGCAGCATAGAA+CGG + chr4_1:54235347-54235366 Msa0556150:CDS 50.0%
CCGCAGGTTTCCATGTTTGT+TGG - chr4_1:54235382-54235401 None:intergenic 50.0%
TGCTATGTTGCAATCACCGC+AGG - chr4_1:54235398-54235417 None:intergenic 50.0%
TGCGGTGATTGCAACATAGC+AGG + chr4_1:54235397-54235416 Msa0556150:CDS 50.0%
!! TTGGCTCGGAACCTTTACCA+CGG + chr4_1:54235558-54235577 Msa0556150:CDS 50.0%
GGAAAATTGAGCTTGGCCCT+CGG - chr4_1:54235634-54235653 None:intergenic 50.0%
TGTTGAGGAACCACCAGAAG+TGG + chr4_1:54235678-54235697 Msa0556150:CDS 50.0%
GAAGGAACAACCACTTCTGG+TGG - chr4_1:54235691-54235710 None:intergenic 50.0%
! GGAGACTACGTTGGTTAGGG+CGG - chr4_1:54235272-54235291 None:intergenic 55.0%
GCCCTAACCAACGTAGTCTC+CGG + chr4_1:54235271-54235290 Msa0556150:CDS 55.0%
! GCCGGAGACTACGTTGGTTA+GGG - chr4_1:54235275-54235294 None:intergenic 55.0%
! AGCCGGAGACTACGTTGGTT+AGG - chr4_1:54235276-54235295 None:intergenic 55.0%
GTTTGCAGTTGAGGTGGAGC+CGG - chr4_1:54235293-54235312 None:intergenic 55.0%
!! TGCTTCCGATGGTGGAATCC+GGG - chr4_1:54235336-54235355 None:intergenic 55.0%
!! CTGCTTCCGATGGTGGAATC+CGG - chr4_1:54235337-54235356 None:intergenic 55.0%
! TATGCTGCTGCTTCCGATGG+TGG - chr4_1:54235344-54235363 None:intergenic 55.0%
AGGAGTGAGGCAGAGACCAT+GGG + chr4_1:54235489-54235508 Msa0556150:CDS 55.0%
GCAGAGACCATGGGGGAAAT+GGG + chr4_1:54235498-54235517 Msa0556150:CDS 55.0%
GGCGGCATTGTCATAAGCTC+TGG - chr4_1:54235596-54235615 None:intergenic 55.0%
GAGGAGTGAGGCAGAGACCA+TGG + chr4_1:54235488-54235507 Msa0556150:CDS 60.0%
GGAGTGAGGCAGAGACCATG+GGG + chr4_1:54235490-54235509 Msa0556150:CDS 60.0%
GAGTGAGGCAGAGACCATGG+GGG + chr4_1:54235491-54235510 Msa0556150:CDS 60.0%
GGCAGAGACCATGGGGGAAA+TGG + chr4_1:54235497-54235516 Msa0556150:CDS 60.0%
TCAGCAGCCCATTTCCCCCA+TGG - chr4_1:54235508-54235527 None:intergenic 60.0%
GATTCGTGACCCGAGACGTG+CGG + chr4_1:54235528-54235547 Msa0556150:CDS 60.0%
AAACACGGACCGCACGTCTC+GGG - chr4_1:54235540-54235559 None:intergenic 60.0%
CAAACACGGACCGCACGTCT+CGG - chr4_1:54235541-54235560 None:intergenic 60.0%
GCTCGGAACCTTTACCACGG+CGG + chr4_1:54235561-54235580 Msa0556150:CDS 60.0%
AGCTTCCTCCGCCGTGGTAA+AGG - chr4_1:54235572-54235591 None:intergenic 60.0%
AATGCCGCCATCGAGTTCCG+TGG + chr4_1:54235607-54235626 Msa0556150:CDS 60.0%
ATGCCGCCATCGAGTTCCGT+GGG + chr4_1:54235608-54235627 Msa0556150:CDS 60.0%
GGTGGAGCCGGAGACTACGT+TGG - chr4_1:54235281-54235300 None:intergenic 65.0%
CGAGACGTGCGGTCCGTGTT+TGG + chr4_1:54235539-54235558 Msa0556150:CDS 65.0%
CGTGCGGTCCGTGTTTGGCT+CGG + chr4_1:54235544-54235563 Msa0556150:CDS 65.0%
CGGAACCTTTACCACGGCGG+AGG + chr4_1:54235564-54235583 Msa0556150:CDS 65.0%
CATCGAGTTCCGTGGGCCGA+GGG + chr4_1:54235615-54235634 Msa0556150:CDS 65.0%
TCTGGCAGCTTCCTCCGCCG+TGG - chr4_1:54235578-54235597 None:intergenic 70.0%
CGGCCCACGGAACTCGATGG+CGG - chr4_1:54235614-54235633 None:intergenic 70.0%
CCTCGGCCCACGGAACTCGA+TGG - chr4_1:54235617-54235636 None:intergenic 70.0%
CCATCGAGTTCCGTGGGCCG+AGG + chr4_1:54235614-54235633 Msa0556150:CDS 70.0%
TGAGCTTGGCCCTCGGCCCA+CGG - chr4_1:54235627-54235646 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54235199 54235894 54235199 ID=Msa0556150;Name=Msa0556150
chr4_1 mRNA 54235199 54235894 54235199 ID=Msa0556150-mRNA-1;Parent=Msa0556150;Name=Msa0556150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|231
chr4_1 exon 54235199 54235894 54235199 ID=Msa0556150-mRNA-1:exon:15937;Parent=Msa0556150-mRNA-1
chr4_1 CDS 54235199 54235894 54235199 ID=Msa0556150-mRNA-1:cds;Parent=Msa0556150-mRNA-1
Gene Sequence

>Msa0556150

ATGAACAACTCCTCTTCCTCCTTCTCATCTACCACTCTCACCTCCGATCAAGAACAATCCGTCATTGTAACCGCCCTAACCAACGTAGTCTCCGGCTCCACCTCAACTGCAAACTCATTACCCGAAGTTTATCTCCCGGATTCCACCATCGGAAGCAGCAGCATAGAACGGATGATTCCACCAACAAACATGGAAACCTGCGGTGATTGCAACATAGCAGGATGTTTAGGATGCAATTTCTTCTCTGAAGAGAACAGGAAAAAACAAAAGAGAGCTAAAAAGAAGTATAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCTGCTGAGATTCGTGACCCGAGACGTGCGGTCCGTGTTTGGCTCGGAACCTTTACCACGGCGGAGGAAGCTGCCAGAGCTTATGACAATGCCGCCATCGAGTTCCGTGGGCCGAGGGCCAAGCTCAATTTTCCACTTGTTGATGAATCCCTTAAGAATGTTGAGGAACCACCAGAAGTGGTTGTTCCTTCTCAGCATGTAAAGGAGGAGAATATGAATCAAGAGATGCAAATTGAAACAACGACGGGGTTTGGGAATAATAAGGATTGTGATTTTTTGGATAGTATTGAGGACGCTGATTTTCAACAATTTATGAGGTTTATGGAATTTTCTGGAGATTCTTCTGGTTCTAGGACAGGGAATACTTTTAATTAG
Protein sequence

>Msa0556150

MNNSSSSFSSTTLTSDQEQSVIVTALTNVVSGSTSTANSLPEVYLPDSTIGSSSIERMIPPTNMETCGDCNIAGCLGCNFFSEENRKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKNVEEPPEVVVPSQHVKEENMNQEMQIETTTGFGNNKDCDFLDSIEDADFQQFMRFMEFSGDSSGSRTGNTFN*