AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556160 MtrunA17_Chr4g0044881 86.385 213 17 5 1 206 33 240 1.16e-122 347
Msa0556160 MtrunA17_Chr4g0044901 71.304 230 35 8 5 206 4 230 6.19e-96 278
Msa0556160 MtrunA17_Chr4g0044871 69.912 226 34 9 9 206 12 231 8.80e-94 273
Msa0556160 MtrunA17_Chr4g0044911 68.398 231 40 9 4 206 9 234 1.17e-90 265
Msa0556160 MtrunA17_Chr8g0375031 50.781 128 59 1 30 157 77 200 7.91e-39 133
Msa0556160 MtrunA17_Chr7g0221471 50.467 107 46 2 37 138 3 107 1.66e-30 110
Msa0556160 MtrunA17_Chr2g0295421 76.562 64 15 0 75 138 89 152 7.10e-30 110
Msa0556160 MtrunA17_Chr7g0221501 72.308 65 18 0 74 138 43 107 9.99e-30 108
Msa0556160 MtrunA17_Chr8g0344961 56.566 99 38 2 75 171 117 212 6.80e-29 110
Msa0556160 MtrunA17_Chr2g0334031 55.556 99 39 2 68 164 103 198 1.05e-28 110
Msa0556160 MtrunA17_Chr1g0195151 69.118 68 21 0 75 142 70 137 2.37e-28 108
Msa0556160 MtrunA17_Chr8g0383591 70.000 70 15 1 69 138 138 201 3.47e-28 107
Msa0556160 MtrunA17_Chr5g0396911 82.456 57 10 0 81 137 111 167 4.41e-27 104
Msa0556160 MtrunA17_Chr2g0282651 67.647 68 22 0 78 145 66 133 4.62e-27 103
Msa0556160 MtrunA17_Chr1g0184081 70.833 72 20 1 68 138 7 78 6.01e-27 100
Msa0556160 MtrunA17_Chr3g0126321 70.000 70 19 1 70 137 99 168 1.68e-26 103
Msa0556160 MtrunA17_Chr2g0316931 73.770 61 16 0 78 138 27 87 1.35e-25 98.6
Msa0556160 MtrunA17_Chr1g0158971 49.194 124 52 3 47 161 75 196 1.57e-25 101
Msa0556160 MtrunA17_Chr3g0099871 70.968 62 18 0 78 139 23 84 2.02e-25 98.6
Msa0556160 MtrunA17_Chr4g0055761 50.442 113 52 3 29 139 93 203 6.28e-25 98.2
Msa0556160 MtrunA17_Chr5g0438831 65.672 67 23 0 78 144 42 108 7.78e-25 98.2
Msa0556160 MtrunA17_Chr8g0390091 46.535 101 51 2 49 146 1 101 2.64e-24 95.9
Msa0556160 MtrunA17_Chr3g0131601 45.985 137 48 3 5 138 19 132 6.19e-24 95.5
Msa0556160 MtrunA17_Chr4g0055781 62.195 82 26 2 73 149 93 174 7.55e-24 95.1
Msa0556160 MtrunA17_Chr3g0134161 41.600 125 55 3 49 171 12 120 8.14e-24 93.2
Msa0556160 MtrunA17_Chr4g0055801 64.865 74 25 1 67 139 139 212 1.24e-23 95.5
Msa0556160 MtrunA17_Chr8g0335331 64.286 70 23 2 82 149 125 194 1.38e-23 93.2
Msa0556160 MtrunA17_Chr5g0438801 62.687 67 25 0 78 144 47 113 1.71e-23 94.7
Msa0556160 MtrunA17_Chr2g0283171 65.217 69 22 2 71 138 53 120 2.01e-23 91.7
Msa0556160 MtrunA17_Chr7g0250731 59.740 77 30 1 81 156 60 136 2.31e-23 92.8
Msa0556160 MtrunA17_Chr5g0437671 64.789 71 23 1 80 150 83 151 2.33e-23 96.3
Msa0556160 MtrunA17_Chr7g0261101 66.667 72 23 1 68 138 6 77 3.36e-23 90.5
Msa0556160 MtrunA17_Chr7g0250721 59.740 77 30 1 81 156 60 136 4.49e-23 92.0
Msa0556160 MtrunA17_Chr4g0046161 66.129 62 20 1 78 138 53 114 6.10e-23 89.4
Msa0556160 MtrunA17_Chr8g0387801 67.164 67 19 1 74 137 96 162 8.66e-23 93.6
Msa0556160 MtrunA17_Chr5g0432821 51.765 85 41 0 78 162 120 204 1.02e-22 92.8
Msa0556160 MtrunA17_Chr8g0335321 56.790 81 29 2 81 160 95 170 1.28e-22 90.9
Msa0556160 MtrunA17_Chr1g0170531 69.355 62 18 1 79 139 86 147 1.32e-22 91.3
Msa0556160 MtrunA17_Chr7g0261151 72.581 62 16 1 78 138 16 77 1.72e-22 88.6
Msa0556160 MtrunA17_Chr7g0250711 67.797 59 18 1 81 138 59 117 2.53e-22 90.1
Msa0556160 MtrunA17_Chr1g0186731 69.492 59 17 1 81 138 20 78 2.59e-22 88.2
Msa0556160 MtrunA17_Chr8g0335311 57.746 71 28 2 80 148 94 164 3.69e-22 89.4
Msa0556160 MtrunA17_Chr2g0283181 61.972 71 24 2 70 139 139 207 3.90e-22 91.3
Msa0556160 MtrunA17_Chr4g0026881 51.456 103 39 4 72 163 85 187 4.19e-22 90.1
Msa0556160 MtrunA17_Chr4g0003421 65.625 64 22 0 78 141 36 99 5.58e-22 90.1
Msa0556160 MtrunA17_Chr7g0232261 48.387 93 42 2 70 156 44 136 5.77e-22 89.7
Msa0556160 MtrunA17_Chr2g0282621 65.574 61 21 0 78 138 11 71 7.45e-22 87.8
Msa0556160 MtrunA17_Chr1g0186671 72.131 61 16 1 79 138 16 76 7.57e-22 87.0
Msa0556160 MtrunA17_Chr8g0382491 70.175 57 17 0 82 138 113 169 8.79e-22 90.1
Msa0556160 MtrunA17_Chr2g0331231 43.243 111 45 4 64 156 6 116 8.79e-22 88.6
Msa0556160 MtrunA17_Chr4g0063751 61.194 67 26 0 77 143 2 68 1.12e-21 88.6
Msa0556160 MtrunA17_Chr4g0002631 58.824 68 22 1 71 138 3 64 1.91e-21 87.4
Msa0556160 MtrunA17_Chr5g0437371 68.852 61 17 1 79 137 61 121 2.12e-21 90.1
Msa0556160 MtrunA17_Chr3g0140161 38.462 130 70 3 77 199 38 164 2.24e-21 87.0
Msa0556160 MtrunA17_Chr2g0297331 69.492 59 17 1 81 138 13 71 2.49e-21 85.5
Msa0556160 MtrunA17_Chr6g0486701 54.054 74 33 1 82 154 44 117 3.09e-21 87.4
Msa0556160 MtrunA17_Chr3g0115631 70.175 57 17 0 82 138 150 206 3.18e-21 89.7
Msa0556160 MtrunA17_Chr7g0257911 65.517 58 20 0 81 138 30 87 3.77e-21 88.6
Msa0556160 MtrunA17_Chr2g0323171 67.797 59 19 0 82 140 65 123 4.84e-21 86.3
Msa0556160 MtrunA17_Chr4g0055951 50.000 82 40 1 76 156 68 149 5.97e-21 87.4
Msa0556160 MtrunA17_Chr5g0425561 60.870 69 27 0 70 138 161 229 6.94e-21 89.0
Msa0556160 MtrunA17_Chr1g0196871 60.000 70 27 1 71 139 5 74 8.22e-21 83.2
Msa0556160 MtrunA17_Chr1g0196781 58.824 68 28 0 71 138 141 208 1.08e-20 87.8
Msa0556160 MtrunA17_Chr8g0340311 55.072 69 31 0 78 146 43 111 1.25e-20 85.5
Msa0556160 MtrunA17_Chr8g0367911 54.930 71 31 1 81 151 43 112 1.35e-20 87.0
Msa0556160 MtrunA17_Chr2g0286161 55.072 69 31 0 69 137 37 105 1.40e-20 87.0
Msa0556160 MtrunA17_Chr2g0333011 63.934 61 22 0 79 139 4 64 1.44e-20 84.7
Msa0556160 MtrunA17_Chr5g0399441 49.367 79 39 1 77 154 23 101 1.67e-20 84.7
Msa0556160 MtrunA17_Chr4g0066931 52.055 73 35 0 69 141 40 112 2.88e-20 87.0
Msa0556160 MtrunA17_Chr3g0129421 82.759 58 10 0 81 138 169 226 3.59e-20 87.0
Msa0556160 MtrunA17_Chr2g0324131 68.421 57 18 0 82 138 218 274 4.85e-20 87.0
Msa0556160 MtrunA17_Chr4g0026931 57.143 77 30 2 72 145 121 197 4.99e-20 85.5
Msa0556160 MtrunA17_Chr1g0189941 53.333 75 30 1 68 137 5 79 5.44e-20 82.8
Msa0556160 MtrunA17_Chr3g0137174 58.824 68 22 1 71 138 3 64 5.95e-20 83.2
Msa0556160 MtrunA17_Chr1g0183981 56.250 80 32 2 69 145 62 141 6.96e-20 84.0
Msa0556160 MtrunA17_Chr1g0153151 54.167 72 30 1 82 153 44 112 9.10e-20 82.8
Msa0556160 MtrunA17_Chr8g0334801 48.276 87 39 2 68 148 32 118 1.49e-19 82.8
Msa0556160 MtrunA17_Chr4g0023411 47.423 97 44 1 82 171 65 161 1.81e-19 82.4
Msa0556160 MtrunA17_Chr5g0401871 56.897 58 25 0 81 138 24 81 2.23e-19 81.6
Msa0556160 MtrunA17_Chr1g0186681 68.333 60 17 1 81 138 18 77 2.35e-19 80.1
Msa0556160 MtrunA17_Chr1g0183961 74.576 59 14 1 81 138 26 84 3.09e-19 80.5
Msa0556160 MtrunA17_Chr7g0253424 57.353 68 28 1 71 137 27 94 4.94e-19 82.4
Msa0556160 MtrunA17_Chr1g0184031 59.155 71 26 2 78 145 80 150 5.57e-19 81.6
Msa0556160 MtrunA17_Chr8g0350701 53.247 77 31 1 64 140 14 85 6.47e-19 82.8
Msa0556160 MtrunA17_Chr1g0184071 57.692 78 26 3 71 145 62 135 1.07e-18 79.7
Msa0556160 MtrunA17_Chr5g0412641 66.667 57 19 0 81 137 45 101 1.18e-18 82.8
Msa0556160 MtrunA17_Chr1g0150691 57.143 63 26 1 77 138 16 78 1.41e-18 80.5
Msa0556160 MtrunA17_Chr1g0184011 63.077 65 21 2 84 145 86 150 1.43e-18 80.5
Msa0556160 MtrunA17_Chr1g0150631 49.333 75 36 1 64 138 22 94 1.49e-18 80.5
Msa0556160 MtrunA17_Chr7g0252381 58.824 68 28 0 81 148 41 108 1.72e-18 81.3
Msa0556160 MtrunA17_Chr7g0261181 71.186 59 16 1 81 138 12 70 1.85e-18 77.8
Msa0556160 MtrunA17_Chr8g0345531 61.404 57 22 0 72 128 106 162 2.05e-18 82.0
Msa0556160 MtrunA17_Chr8g0378811 54.930 71 31 1 68 137 40 110 2.16e-18 80.9
Msa0556160 MtrunA17_Chr1g0150671 35.714 140 63 4 82 195 46 184 2.32e-18 80.9
Msa0556160 MtrunA17_Chr4g0062551 58.065 62 26 0 81 142 52 113 3.09e-18 77.4
Msa0556160 MtrunA17_Chr7g0275841 52.459 61 29 0 78 138 24 84 3.90e-18 78.2
Msa0556160 MtrunA17_Chr1g0205961 53.968 63 29 0 66 128 99 161 3.95e-18 81.3
Msa0556160 MtrunA17_Chr2g0301191 50.725 69 34 0 70 138 7 75 4.02e-18 79.0
Msa0556160 MtrunA17_Chr1g0184061 58.571 70 26 2 82 150 77 144 4.20e-18 79.3
Msa0556160 MtrunA17_Chr1g0167781 61.728 81 27 3 69 145 68 148 4.95e-18 79.0
Msa0556160 MtrunA17_Chr4g0042761 56.522 69 29 1 75 143 42 109 5.32e-18 80.5
Msa0556160 MtrunA17_Chr4g0062161 52.000 75 35 1 69 142 39 113 5.79e-18 78.6
Msa0556160 MtrunA17_Chr1g0209891 53.968 63 29 0 67 129 39 101 6.09e-18 80.1
Msa0556160 MtrunA17_Chr7g0243431 60.317 63 18 1 82 137 78 140 7.68e-18 80.9
Msa0556160 MtrunA17_Chr6g0461941 63.514 74 27 0 78 151 16 89 8.93e-18 78.2
Msa0556160 MtrunA17_Chr1g0150661 43.210 81 38 1 82 154 35 115 1.05e-17 78.2
Msa0556160 MtrunA17_Chr6g0453661 61.404 57 22 0 81 137 37 93 1.59e-17 79.7
Msa0556160 MtrunA17_Chr8g0346741 46.753 77 39 1 78 154 35 109 2.25e-17 76.3
Msa0556160 MtrunA17_Chr7g0217991 61.404 57 22 0 81 137 41 97 2.53e-17 79.3
Msa0556160 MtrunA17_Chr7g0265851 59.649 57 23 0 82 138 24 80 2.78e-17 76.6
Msa0556160 MtrunA17_Chr6g0461271 58.621 58 24 0 80 137 31 88 3.28e-17 78.2
Msa0556160 MtrunA17_Chr4g0017851 43.902 82 46 0 67 148 103 184 5.42e-17 77.4
Msa0556160 MtrunA17_Chr1g0203861 55.385 65 29 0 73 137 35 99 1.24e-16 75.1
Msa0556160 MtrunA17_Chr1g0170471 65.385 52 17 1 89 139 90 141 1.35e-16 73.9
Msa0556160 MtrunA17_Chr1g0146191 55.556 81 34 1 70 148 33 113 1.71e-16 75.5
Msa0556160 MtrunA17_Chr1g0200931 48.052 77 36 2 70 142 10 86 2.14e-16 72.8
Msa0556160 MtrunA17_Chr1g0183931 68.657 67 18 2 82 145 101 167 2.30e-16 75.1
Msa0556160 MtrunA17_Chr7g0261201 62.162 74 25 2 75 145 91 164 3.25e-16 74.3
Msa0556160 MtrunA17_Chr2g0301171 47.826 69 36 0 70 138 7 75 4.02e-16 73.6
Msa0556160 MtrunA17_Chr6g0473931 52.778 72 30 1 70 137 17 88 4.64e-16 73.2
Msa0556160 MtrunA17_Chr3g0142081 53.086 81 36 1 82 160 39 119 5.52e-16 73.6
Msa0556160 MtrunA17_Chr5g0396171 47.761 67 35 0 84 150 26 92 6.43e-16 70.1
Msa0556160 MtrunA17_Chr3g0083501 62.000 50 19 0 89 138 2 51 8.99e-16 69.3
Msa0556160 MtrunA17_Chr6g0486711 57.971 69 29 0 78 146 45 113 9.57e-16 73.2
Msa0556160 MtrunA17_Chr6g0473941 51.389 72 31 1 70 137 17 88 1.23e-15 72.4
Msa0556160 MtrunA17_Chr5g0396191 56.716 67 29 0 82 148 11 77 1.56e-15 71.6
Msa0556160 MtrunA17_Chr1g0149331 66.667 60 20 0 80 139 5 64 1.86e-15 71.6
Msa0556160 MtrunA17_Chr8g0345551 61.702 47 18 0 82 128 117 163 3.55e-15 72.8
Msa0556160 MtrunA17_Chr6g0473881 49.254 67 34 0 71 137 99 165 4.12e-15 72.4
Msa0556160 MtrunA17_Chr1g0186741 64.286 70 22 2 78 144 69 138 5.29e-15 70.9
Msa0556160 MtrunA17_Chr2g0301181 49.206 63 32 0 76 138 13 75 5.53e-15 70.9
Msa0556160 MtrunA17_Chr6g0473741 49.254 67 34 0 71 137 55 121 5.70e-15 70.9
Msa0556160 MtrunA17_Chr6g0473981 50.000 76 30 1 62 137 42 109 7.36e-15 70.9
Msa0556160 MtrunA17_Chr3g0136551 52.632 57 27 0 81 137 64 120 8.81e-15 70.9
Msa0556160 MtrunA17_Chr6g0464581 82.000 50 9 0 89 138 187 236 1.03e-14 71.6
Msa0556160 MtrunA17_Chr6g0473781 49.254 67 34 0 71 137 46 112 1.13e-14 70.1
Msa0556160 MtrunA17_Chr1g0201671 82.000 50 9 0 89 138 146 195 1.31e-14 71.2
Msa0556160 MtrunA17_Chr6g0473961 58.929 56 23 0 82 137 54 109 1.49e-14 69.7
Msa0556160 MtrunA17_Chr7g0261171 67.164 67 19 2 82 145 85 151 1.65e-14 69.7
Msa0556160 MtrunA17_Chr6g0473971 47.368 76 32 1 62 137 42 109 1.73e-14 69.7
Msa0556160 MtrunA17_Chr6g0473861 57.143 56 24 0 82 137 63 118 1.81e-14 70.1
Msa0556160 MtrunA17_Chr7g0225131 53.968 63 25 2 77 138 23 82 1.87e-14 66.2
Msa0556160 MtrunA17_Chr1g0155751 64.912 57 20 0 82 138 39 95 2.35e-14 69.7
Msa0556160 MtrunA17_Chr4g0057241 52.459 61 28 1 78 138 11 70 2.75e-14 67.8
Msa0556160 MtrunA17_Chr6g0473771 53.571 56 26 0 82 137 43 98 2.76e-14 66.6
Msa0556160 MtrunA17_Chr5g0438841 46.835 79 42 0 71 149 5 83 4.15e-14 67.4
Msa0556160 MtrunA17_Chr3g0137831 65.000 60 21 0 81 140 7 66 1.30e-13 67.0
Msa0556160 MtrunA17_Chr5g0396301 51.613 62 28 1 79 138 15 76 1.49e-13 65.9
Msa0556160 MtrunA17_Chr6g0474001 57.143 56 24 0 82 137 54 109 1.75e-13 67.4
Msa0556160 MtrunA17_Chr3g0108241 46.739 92 40 3 71 154 97 187 7.33e-13 65.5
Msa0556160 MtrunA17_Chr3g0136541 51.852 54 26 0 84 137 42 95 8.91e-13 65.1
Msa0556160 MtrunA17_Chr5g0423811 55.000 60 26 1 71 129 76 135 9.88e-13 65.5
Msa0556160 MtrunA17_Chr5g0422501 49.275 69 32 2 75 142 100 166 1.61e-12 65.5
Msa0556160 MtrunA17_Chr5g0396741 60.294 68 27 0 78 145 113 180 4.83e-12 63.9
Msa0556160 MtrunA17_Chr1g0198661 50.000 62 29 1 75 136 57 116 1.10e-11 63.2
Msa0556160 MtrunA17_Chr5g0398061 43.750 80 32 2 71 137 31 110 2.29e-11 60.8
Msa0556160 MtrunA17_Chr6g0473791 53.061 49 23 0 82 130 57 105 2.51e-11 59.3
Msa0556160 MtrunA17_Chr1g0203831 58.621 58 23 1 81 138 56 112 3.05e-11 60.1
Msa0556160 MtrunA17_Chr5g0424051 55.556 63 27 1 78 139 92 154 3.18e-11 61.2
Msa0556160 MtrunA17_Chr5g0398091 42.500 80 33 2 71 137 36 115 4.27e-11 60.1
Msa0556160 MtrunA17_Chr3g0114761 47.222 72 36 1 81 150 24 95 4.57e-11 60.1
Msa0556160 MtrunA17_Chr5g0400871 39.216 102 56 4 82 179 355 454 5.28e-11 61.2
Msa0556160 MtrunA17_Chr5g0398081 43.750 80 37 2 82 155 49 126 5.46e-11 60.1
Msa0556160 MtrunA17_Chr1g0186721 59.701 67 22 2 77 138 8 74 7.79e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556160 AT4G34410.1 47.568 185 41 4 5 141 19 195 9.22e-39 134
Msa0556160 AT5G67000.1 44.366 142 70 3 6 146 48 181 4.38e-31 112
Msa0556160 AT5G13330.1 67.606 71 23 0 68 138 25 95 3.32e-30 110
Msa0556160 AT2G47520.1 75.000 64 16 0 75 138 43 106 4.35e-30 109
Msa0556160 AT3G16770.1 72.059 68 19 0 71 138 68 135 5.08e-30 111
Msa0556160 AT2G33710.1 77.419 62 14 0 77 138 65 126 2.87e-29 108
Msa0556160 AT2G33710.2 77.419 62 14 0 77 138 65 126 3.36e-29 108
Msa0556160 AT5G61890.1 43.284 134 67 3 5 138 22 146 7.70e-29 108
Msa0556160 AT4G11140.1 82.759 58 10 0 81 138 86 143 1.22e-28 108
Msa0556160 AT4G27950.1 50.000 104 50 1 70 171 106 209 2.66e-26 103
Msa0556160 AT5G44210.1 71.212 66 19 0 78 143 29 94 2.70e-26 100
Msa0556160 AT1G03800.1 66.154 65 22 0 76 140 47 111 4.10e-26 101
Msa0556160 AT1G72360.1 65.625 64 22 0 75 138 18 81 5.65e-26 100
Msa0556160 AT3G15210.1 69.697 66 20 0 77 142 20 85 7.49e-26 100
Msa0556160 AT1G72360.2 65.625 64 22 0 75 138 69 132 1.12e-25 100
Msa0556160 AT1G72360.3 65.625 64 22 0 75 138 67 130 1.22e-25 100
Msa0556160 AT1G28370.2 74.138 58 15 0 81 138 57 114 4.33e-25 97.4
Msa0556160 AT5G50080.1 49.275 138 50 2 16 138 1 133 4.93e-25 97.8
Msa0556160 AT4G23750.2 75.439 57 14 0 81 137 121 177 5.24e-25 100
Msa0556160 AT4G23750.1 75.439 57 14 0 81 137 121 177 5.24e-25 100
Msa0556160 AT1G28370.1 74.138 58 15 0 81 138 19 76 7.24e-25 95.9
Msa0556160 AT5G50080.2 47.183 142 56 2 16 138 1 142 7.48e-25 97.4
Msa0556160 AT5G47230.1 54.000 100 44 2 41 139 116 214 1.11e-24 98.6
Msa0556160 AT5G47220.1 46.269 134 53 4 13 139 54 175 1.56e-24 97.1
Msa0556160 AT3G61630.1 70.492 61 18 0 77 137 100 160 5.20e-24 97.1
Msa0556160 AT5G51190.1 72.881 59 15 1 82 139 72 130 5.80e-24 95.1
Msa0556160 AT5G53290.1 72.881 59 16 0 81 139 124 182 6.30e-24 97.4
Msa0556160 AT4G17500.1 71.875 64 17 1 77 139 143 206 8.75e-24 95.5
Msa0556160 AT5G43410.1 71.429 63 17 1 77 138 10 72 1.21e-23 91.7
Msa0556160 AT3G20310.1 48.454 97 45 2 78 174 23 114 1.52e-23 94.4
Msa0556160 AT1G43160.1 50.000 132 39 4 19 138 1 117 2.10e-23 92.8
Msa0556160 AT1G50640.1 67.742 62 20 0 78 139 24 85 2.57e-23 93.6
Msa0556160 AT2G44840.1 61.972 71 26 1 76 145 86 156 5.25e-23 92.8
Msa0556160 AT2G22200.1 65.152 66 22 1 80 144 69 134 8.61e-23 92.8
Msa0556160 AT5G07310.1 43.284 134 61 2 5 138 30 148 1.58e-22 92.0
Msa0556160 AT2G20350.1 46.457 127 63 2 7 133 17 138 2.04e-22 89.4
Msa0556160 AT5G05410.2 54.545 88 33 1 82 162 79 166 2.26e-22 92.4
Msa0556160 AT5G25810.1 53.165 79 37 0 68 146 22 100 2.66e-22 90.5
Msa0556160 AT4G17490.1 63.514 74 26 1 67 139 122 195 3.43e-22 91.7
Msa0556160 AT5G05410.1 54.545 88 33 1 82 162 79 166 3.50e-22 92.4
Msa0556160 AT3G23230.1 69.355 62 18 1 78 138 16 77 3.98e-22 88.2
Msa0556160 AT5G11590.1 54.878 82 35 1 69 148 36 117 5.23e-22 90.1
Msa0556160 AT4G32800.1 53.846 78 36 0 71 148 8 85 6.23e-22 89.7
Msa0556160 AT1G22190.1 69.841 63 18 1 77 138 77 139 6.50e-22 90.5
Msa0556160 AT4G13620.1 67.188 64 21 0 82 145 232 295 6.61e-22 92.4
Msa0556160 AT4G39780.1 44.348 115 62 2 24 138 37 149 7.43e-22 90.5
Msa0556160 AT1G75490.1 57.143 70 30 0 82 151 42 111 7.87e-22 89.0
Msa0556160 AT1G22985.1 64.384 73 21 2 77 144 70 142 8.62e-22 87.8
Msa0556160 AT5G61600.1 67.797 59 18 1 82 139 88 146 1.06e-21 89.7
Msa0556160 AT1G36060.1 69.492 59 18 0 82 140 143 201 1.14e-21 90.9
Msa0556160 AT1G15360.1 64.516 62 22 0 78 139 3 64 1.21e-21 88.6
Msa0556160 AT1G15360.2 64.516 62 22 0 78 139 3 64 1.21e-21 88.6
Msa0556160 AT2G20880.1 58.904 73 30 0 66 138 171 243 1.24e-21 90.9
Msa0556160 AT1G28360.1 66.129 62 21 0 77 138 7 68 1.33e-21 88.2
Msa0556160 AT3G23240.1 50.459 109 47 4 76 177 76 184 2.07e-21 88.2
Msa0556160 AT1G78080.1 71.930 57 16 0 82 138 152 208 2.16e-21 90.5
Msa0556160 AT4G36900.1 55.556 63 28 0 76 138 24 86 2.93e-21 87.4
Msa0556160 AT2G31230.1 66.176 68 20 2 82 146 86 153 4.25e-21 87.8
Msa0556160 AT4G06746.1 54.286 70 30 1 71 138 23 92 4.87e-21 85.5
Msa0556160 AT2G35700.1 49.367 79 39 1 77 154 40 118 4.90e-21 86.7
Msa0556160 AT2G46310.1 70.175 57 17 0 81 137 98 154 5.89e-21 88.6
Msa0556160 AT4G28140.1 70.175 57 17 0 82 138 143 199 6.02e-21 88.6
Msa0556160 AT2G25820.1 58.209 67 28 0 82 148 26 92 6.57e-21 87.0
Msa0556160 AT2G44940.1 56.338 71 31 0 78 148 96 166 7.41e-21 88.2
Msa0556160 AT5G64750.1 78.000 50 11 0 89 138 192 241 7.67e-21 89.4
Msa0556160 AT5G65130.1 68.421 57 18 0 82 138 111 167 7.75e-21 87.8
Msa0556160 AT5G65130.2 68.421 57 18 0 82 138 113 169 8.07e-21 87.8
Msa0556160 AT1G71450.1 52.703 74 35 0 82 155 24 97 9.92e-21 85.5
Msa0556160 AT5G25190.1 58.824 68 22 1 71 138 3 64 1.02e-20 85.5
Msa0556160 AT5G25390.2 56.522 69 30 0 81 149 6 74 1.11e-20 85.5
Msa0556160 AT1G71130.1 64.706 68 19 1 80 142 77 144 1.51e-20 84.7
Msa0556160 AT5G67190.1 55.556 63 28 0 76 138 15 77 1.60e-20 85.1
Msa0556160 AT4G16750.1 49.367 79 39 1 77 154 35 113 2.32e-20 84.7
Msa0556160 AT4G18450.1 68.750 64 18 2 78 139 106 169 2.44e-20 87.0
Msa0556160 AT5G07580.1 66.102 59 19 1 82 139 110 168 2.64e-20 85.1
Msa0556160 AT3G57600.1 54.412 68 31 0 81 148 27 94 2.99e-20 86.3
Msa0556160 AT1G46768.3 54.167 72 32 1 67 138 17 87 3.19e-20 83.2
Msa0556160 AT1G46768.1 54.167 72 32 1 67 138 17 87 3.37e-20 83.6
Msa0556160 AT1G46768.2 54.167 72 32 1 67 138 17 87 3.37e-20 83.6
Msa0556160 AT2G23340.1 59.649 57 23 0 82 138 28 84 5.49e-20 83.6
Msa0556160 AT3G14230.2 35.644 202 84 4 18 205 81 250 6.74e-20 86.7
Msa0556160 AT3G16280.1 63.158 57 21 0 82 138 61 117 6.85e-20 84.7
Msa0556160 AT3G16280.2 63.158 57 21 0 82 138 79 135 7.58e-20 84.7
Msa0556160 AT3G60490.1 47.778 90 42 2 70 154 55 144 9.34e-20 84.7
Msa0556160 AT5G19790.1 53.521 71 33 0 67 137 7 77 1.07e-19 84.3
Msa0556160 AT5G13910.1 56.164 73 32 0 69 141 7 79 1.12e-19 83.6
Msa0556160 AT1G21910.1 45.679 81 36 1 82 162 50 122 1.17e-19 84.0
Msa0556160 AT5G18560.1 41.000 100 59 0 68 167 41 140 2.44e-19 84.7
Msa0556160 AT3G50260.1 57.895 57 24 0 82 138 21 77 2.57e-19 81.3
Msa0556160 AT1G12980.1 66.667 57 19 0 81 137 56 112 2.78e-19 84.3
Msa0556160 AT3G11020.1 64.912 57 20 0 82 138 78 134 3.34e-19 84.3
Msa0556160 AT1G24590.1 51.190 84 37 1 81 160 57 140 4.39e-19 83.6
Msa0556160 AT5G25390.1 55.072 69 28 1 81 149 6 71 4.65e-19 81.3
Msa0556160 AT3G14230.1 40.132 152 66 3 68 205 114 254 1.16e-18 83.2
Msa0556160 AT3G14230.3 40.132 152 66 3 68 205 109 249 1.26e-18 83.2
Msa0556160 AT1G01250.1 52.174 69 33 0 78 146 41 109 1.65e-18 80.1
Msa0556160 AT1G53910.3 64.935 77 24 1 76 149 117 193 2.21e-18 82.4
Msa0556160 AT1G53910.1 64.935 77 24 1 76 149 119 195 2.43e-18 82.0
Msa0556160 AT1G53910.2 64.935 77 24 1 76 149 119 195 2.43e-18 82.0
Msa0556160 AT5G18450.1 64.286 56 20 0 82 137 34 89 2.90e-18 81.3
Msa0556160 AT5G67010.1 39.815 108 58 3 10 115 21 123 2.92e-18 78.6
Msa0556160 AT4G25470.1 56.944 72 27 1 70 137 35 106 3.72e-18 79.7
Msa0556160 AT2G40340.2 59.322 59 24 0 82 140 14 72 4.62e-18 80.5
Msa0556160 AT2G40340.5 59.322 59 24 0 82 140 14 72 4.62e-18 80.5
Msa0556160 AT2G40340.4 59.322 59 24 0 82 140 14 72 4.62e-18 80.5
Msa0556160 AT2G40350.2 57.627 59 25 0 82 140 74 132 5.56e-18 77.8
Msa0556160 AT2G40350.1 57.627 59 25 0 82 140 67 125 6.71e-18 77.4
Msa0556160 AT4G25490.1 55.556 72 28 1 70 137 32 103 6.85e-18 79.0
Msa0556160 AT1G74930.1 49.296 71 36 0 68 138 7 77 1.29e-17 77.8
Msa0556160 AT1G28160.1 62.295 61 23 0 81 141 38 98 1.40e-17 78.6
Msa0556160 AT1G12890.1 54.412 68 31 0 70 137 9 76 1.56e-17 78.2
Msa0556160 AT5G21960.1 60.345 58 23 0 81 138 6 63 1.63e-17 77.8
Msa0556160 AT2G40340.6 59.322 59 24 0 82 140 79 137 1.68e-17 79.7
Msa0556160 AT2G40340.1 59.322 59 24 0 82 140 72 130 1.89e-17 79.7
Msa0556160 AT2G40340.3 59.322 59 24 0 82 140 72 130 1.96e-17 79.0
Msa0556160 AT4G25480.1 54.167 72 29 1 70 137 35 106 3.03e-17 77.0
Msa0556160 AT2G36450.1 53.731 67 30 1 73 138 6 72 8.19e-17 75.5
Msa0556160 AT3G23220.1 68.182 66 20 1 81 145 13 78 8.97e-17 73.9
Msa0556160 AT1G19210.1 55.932 59 26 0 80 138 10 68 1.10e-16 75.1
Msa0556160 AT1G06160.1 64.706 68 21 2 82 146 82 149 1.93e-16 75.5
Msa0556160 AT4G31060.1 54.386 57 26 0 82 138 27 83 3.94e-16 73.6
Msa0556160 AT5G51990.1 55.385 65 29 0 73 137 45 109 3.96e-16 74.3
Msa0556160 AT1G04370.1 69.841 63 18 1 77 138 15 77 5.12e-16 72.0
Msa0556160 AT1G53170.1 65.625 64 22 0 77 140 26 89 5.98e-16 73.2
Msa0556160 AT1G68550.1 68.750 48 15 0 81 128 112 159 7.27e-16 75.1
Msa0556160 AT1G68550.2 68.750 48 15 0 81 128 112 159 7.27e-16 75.1
Msa0556160 AT1G77200.1 54.054 74 34 0 73 146 34 107 1.63e-15 73.2
Msa0556160 AT5G11190.1 56.098 82 27 1 81 162 6 78 3.54e-15 71.2
Msa0556160 AT2G40220.1 58.333 72 27 1 69 137 39 110 1.14e-14 71.6
Msa0556160 AT5G61590.1 57.746 71 29 1 70 139 95 165 4.96e-14 68.2
Msa0556160 AT1G63030.2 47.368 76 33 1 69 137 10 85 6.23e-14 67.4
Msa0556160 AT1G63030.1 47.368 76 33 1 69 137 10 85 6.23e-14 67.4
Msa0556160 AT1G22810.1 50.000 68 31 2 80 144 12 79 7.39e-14 66.6
Msa0556160 AT2G38340.1 59.091 66 19 1 81 138 69 134 9.96e-14 68.2
Msa0556160 AT1G49120.1 48.750 80 39 1 76 153 81 160 1.58e-13 68.6
Msa0556160 AT1G71520.1 40.449 89 47 3 80 163 12 99 2.32e-13 65.1
Msa0556160 AT1G77640.1 55.556 63 28 0 76 138 37 99 2.57e-13 67.0
Msa0556160 AT1G12610.1 43.421 76 36 1 69 137 10 85 4.20e-13 65.9
Msa0556160 AT3G25890.1 61.224 49 19 0 80 128 129 177 7.04e-13 66.6
Msa0556160 AT3G25890.2 61.224 49 19 0 80 128 129 177 7.04e-13 66.6
Msa0556160 AT1G64380.1 65.574 61 21 0 78 138 132 192 1.67e-12 65.5
Msa0556160 AT1G33760.1 53.846 65 30 0 82 146 20 84 1.74e-12 63.5
Msa0556160 AT1G68840.2 50.000 68 32 1 75 142 58 123 6.79e-12 63.9
Msa0556160 AT1G68840.1 50.000 68 32 1 75 142 58 123 6.79e-12 63.9
Msa0556160 AT3G25730.1 36.538 104 57 3 69 167 49 148 3.07e-11 62.0
Msa0556160 AT1G13260.1 38.776 98 54 2 75 168 55 150 3.15e-11 62.0
Msa0556160 AT5G52020.1 53.226 62 28 1 77 138 60 120 6.27e-11 60.1
Msa0556160 AT1G44830.1 53.846 65 29 1 81 144 34 98 6.78e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCAAATTGGGAATAAT+TGG 0.136398 4_1:+54240106 Msa0556160:CDS
TCAACAACTTATGAGGTTTA+TGG 0.166648 4_1:+54240170 Msa0556160:CDS
TTCTTAGCTCTTCTTTGTTT+TGG 0.187473 4_1:-54239823 None:intergenic
ATGAATGAAGAAATGCAAAT+TGG 0.238856 4_1:+54240096 Msa0556160:CDS
GGCAGAGACCATGGGGAAAA+TGG 0.280709 4_1:+54239866 Msa0556160:CDS
ACATGAACAACCACTTCTTC+TGG 0.357166 4_1:-54240060 None:intergenic
GTTCCTCAACAGTACGCTTA+AGG 0.360964 4_1:-54240038 None:intergenic
TGGAAAATTAAGCTTGGCTC+TGG 0.374164 4_1:-54240001 None:intergenic
TGCAACATAGCAGGATGTTT+AGG 0.384768 4_1:+54239772 Msa0556160:CDS
TTCCTCAACAGTACGCTTAA+GGG 0.385516 4_1:-54240037 None:intergenic
GATTCTTCTGATTCTAGAAC+AGG 0.395276 4_1:+54240192 Msa0556160:CDS
CGAGACGTGCAGTCCGTGTT+TGG 0.399997 4_1:+54239908 Msa0556160:CDS
TGAATGAAGAAATGCAAATT+GGG 0.418905 4_1:+54240097 Msa0556160:CDS
AATGCAAATTGGGAATAATT+GGG 0.426474 4_1:+54240107 Msa0556160:CDS
CTCTAAGCCGCTGCTTCCCA+CGG 0.446876 4_1:-54239707 None:intergenic
GGTGAGGGTGGTGGTGGAGA+AGG 0.454388 4_1:-54239620 None:intergenic
CGTGCAGTCCGTGTTTGGCT+TGG 0.454972 4_1:+54239913 Msa0556160:CDS
TGCTATGTTGCATTCACGAC+AGG 0.455760 4_1:-54239761 None:intergenic
ATCGGAGGTGAGGGTGGTGG+TGG 0.456825 4_1:-54239626 None:intergenic
AGCCTCCTCCGCCGTGGTAA+AGG 0.456876 4_1:-54239938 None:intergenic
GCAGAGACCATGGGGAAAAT+GGG 0.459400 4_1:+54239867 Msa0556160:CDS
CTTAGAGCAAATAGTTCAAC+CGG 0.461895 4_1:+54239723 Msa0556160:CDS
ACCGGAGACTACGTTGGTTA+AGG 0.463151 4_1:-54239674 None:intergenic
TCCCACGGTGGAGGTAGAAC+CGG 0.489008 4_1:-54239692 None:intergenic
GAGGAGTGAGGCAGAGACCA+TGG 0.501014 4_1:+54239857 Msa0556160:CDS
AGGAGTGAGGCAGAGACCAT+GGG 0.502190 4_1:+54239858 Msa0556160:CDS
TTGATCGGAGGTGAGGGTGG+TGG 0.503551 4_1:-54239629 None:intergenic
GCCGCTGCTTCCCACGGTGG+AGG 0.509847 4_1:-54239701 None:intergenic
AACCTTTACCACGGCGGAGG+AGG 0.521446 4_1:+54239936 Msa0556160:CDS
GCCTTAACCAACGTAGTCTC+CGG 0.524588 4_1:+54239673 Msa0556160:CDS
AGAAGTGGTTGTTCATGTAA+AGG 0.530475 4_1:+54240065 Msa0556160:CDS
TGGAACCTTTACCACGGCGG+AGG 0.533157 4_1:+54239933 Msa0556160:CDS
TGTCGTGAATGCAACATAGC+AGG 0.533664 4_1:+54239763 Msa0556160:CDS
AGTTCAACCGGCAGTGAACA+TGG 0.535559 4_1:+54239735 Msa0556160:CDS
CAGGTTTCCATGTTCACTGC+CGG 0.538746 4_1:-54239742 None:intergenic
GACAAGTGGAAAATTAAGCT+TGG 0.549098 4_1:-54240007 None:intergenic
ACCTCCACCGTGGGAAGCAG+CGG 0.549438 4_1:+54239700 Msa0556160:CDS
GAGTTCTTGATCGGAGGTGA+GGG 0.565113 4_1:-54239635 None:intergenic
TTCTTGATCGGAGGTGAGGG+TGG 0.566361 4_1:-54239632 None:intergenic
AGAGTTCTTGATCGGAGGTG+AGG 0.568888 4_1:-54239636 None:intergenic
ATCCCTTAAGCGTACTGTTG+AGG 0.586589 4_1:+54240035 Msa0556160:CDS
TAAGCTTGGCTCTGGGCCCG+CGG 0.588130 4_1:-54239993 None:intergenic
ATGCCGCTATCGAGTTCCGC+GGG 0.598159 4_1:+54239977 Msa0556160:CDS
GGAAAATTAAGCTTGGCTCT+GGG 0.598454 4_1:-54240000 None:intergenic
GACTGAGAGTTCTTGATCGG+AGG 0.604051 4_1:-54239641 None:intergenic
TCCGGTTCTACCTCCACCGT+GGG 0.607896 4_1:+54239691 Msa0556160:CDS
TGTTGAGGAACCAGAAGAAG+TGG 0.608852 4_1:+54240050 Msa0556160:CDS
AATGCCGCTATCGAGTTCCG+CGG 0.614162 4_1:+54239976 Msa0556160:CDS
CAAACACGGACTGCACGTCT+CGG 0.616293 4_1:-54239907 None:intergenic
GCTAAGAATAATAAGTACAG+AGG 0.620927 4_1:+54239838 Msa0556160:CDS
GATGACTGAGAGTTCTTGAT+CGG 0.621381 4_1:-54239644 None:intergenic
CTCCGGTTCTACCTCCACCG+TGG 0.642327 4_1:+54239690 Msa0556160:CDS
TAAAGGTTCCAAGCCAAACA+CGG 0.647658 4_1:-54239921 None:intergenic
TAAGCCGCTGCTTCCCACGG+TGG 0.649045 4_1:-54239704 None:intergenic
GGGCCCGCGGAACTCGATAG+CGG 0.656229 4_1:-54239980 None:intergenic
TTGGCTTGGAACCTTTACCA+CGG 0.660397 4_1:+54239927 Msa0556160:CDS
GGAGTGAGGCAGAGACCATG+GGG 0.661786 4_1:+54239859 Msa0556160:CDS
TCTAGCAGCCTCCTCCGCCG+TGG 0.668041 4_1:-54239944 None:intergenic
ATAATAAGTACAGAGGAGTG+AGG 0.674805 4_1:+54239845 Msa0556160:CDS
TTAAGGGATTCATCGACAAG+TGG 0.701306 4_1:-54240021 None:intergenic
GGTAGAACCGGAGACTACGT+TGG 0.709452 4_1:-54239680 None:intergenic
GCTTGGAACCTTTACCACGG+CGG 0.735195 4_1:+54239930 Msa0556160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGAATGAAGAAATGCAAAT+TGG + chr4_1:54240096-54240115 Msa0556160:CDS 25.0%
! TGAATGAAGAAATGCAAATT+GGG + chr4_1:54240097-54240116 Msa0556160:CDS 25.0%
! AAATGCAAATTGGGAATAAT+TGG + chr4_1:54240106-54240125 Msa0556160:CDS 25.0%
! AATGCAAATTGGGAATAATT+GGG + chr4_1:54240107-54240126 Msa0556160:CDS 25.0%
!! ATAATTGGGAATGTGATTTT+TGG + chr4_1:54240121-54240140 Msa0556160:CDS 25.0%
!! TAATTGGGAATGTGATTTTT+GGG + chr4_1:54240122-54240141 Msa0556160:CDS 25.0%
! ATGAATGAAGAAATGCAAAT+TGG + chr4_1:54240096-54240115 Msa0556160:CDS 25.0%
! TGAATGAAGAAATGCAAATT+GGG + chr4_1:54240097-54240116 Msa0556160:CDS 25.0%
! AAATGCAAATTGGGAATAAT+TGG + chr4_1:54240106-54240125 Msa0556160:CDS 25.0%
! AATGCAAATTGGGAATAATT+GGG + chr4_1:54240107-54240126 Msa0556160:CDS 25.0%
!! ATAATTGGGAATGTGATTTT+TGG + chr4_1:54240121-54240140 Msa0556160:CDS 25.0%
!! TAATTGGGAATGTGATTTTT+GGG + chr4_1:54240122-54240141 Msa0556160:CDS 25.0%
!!! GTTTTGGTTTTTTCTCTTCA+GGG - chr4_1:54239810-54239829 None:intergenic 30.0%
!!! TGTTTTGGTTTTTTCTCTTC+AGG - chr4_1:54239811-54239830 None:intergenic 30.0%
!! TTCTTAGCTCTTCTTTGTTT+TGG - chr4_1:54239826-54239845 None:intergenic 30.0%
GCTAAGAATAATAAGTACAG+AGG + chr4_1:54239838-54239857 Msa0556160:CDS 30.0%
!!! TGTGATTTTTGGGATAGTAT+TGG + chr4_1:54240132-54240151 Msa0556160:CDS 30.0%
!!! GTGATTTTTGGGATAGTATT+GGG + chr4_1:54240133-54240152 Msa0556160:CDS 30.0%
!!! TGATTTTTGGGATAGTATTG+GGG + chr4_1:54240134-54240153 Msa0556160:CDS 30.0%
! CTGATTTTCAACAACTTATG+AGG + chr4_1:54240163-54240182 Msa0556160:CDS 30.0%
TCAACAACTTATGAGGTTTA+TGG + chr4_1:54240170-54240189 Msa0556160:CDS 30.0%
!!! GTTTTGGTTTTTTCTCTTCA+GGG - chr4_1:54239810-54239829 None:intergenic 30.0%
!!! TGTTTTGGTTTTTTCTCTTC+AGG - chr4_1:54239811-54239830 None:intergenic 30.0%
!! TTCTTAGCTCTTCTTTGTTT+TGG - chr4_1:54239826-54239845 None:intergenic 30.0%
GCTAAGAATAATAAGTACAG+AGG + chr4_1:54239838-54239857 Msa0556160:CDS 30.0%
!!! TGTGATTTTTGGGATAGTAT+TGG + chr4_1:54240132-54240151 Msa0556160:CDS 30.0%
!!! GTGATTTTTGGGATAGTATT+GGG + chr4_1:54240133-54240152 Msa0556160:CDS 30.0%
!!! TGATTTTTGGGATAGTATTG+GGG + chr4_1:54240134-54240153 Msa0556160:CDS 30.0%
! CTGATTTTCAACAACTTATG+AGG + chr4_1:54240163-54240182 Msa0556160:CDS 30.0%
TCAACAACTTATGAGGTTTA+TGG + chr4_1:54240170-54240189 Msa0556160:CDS 30.0%
CTTAGAGCAAATAGTTCAAC+CGG + chr4_1:54239723-54239742 Msa0556160:CDS 35.0%
ATAATAAGTACAGAGGAGTG+AGG + chr4_1:54239845-54239864 Msa0556160:CDS 35.0%
GACAAGTGGAAAATTAAGCT+TGG - chr4_1:54240010-54240029 None:intergenic 35.0%
AGAAGTGGTTGTTCATGTAA+AGG + chr4_1:54240065-54240084 Msa0556160:CDS 35.0%
!! GATTCTTCTGATTCTAGAAC+AGG + chr4_1:54240192-54240211 Msa0556160:CDS 35.0%
CTTAGAGCAAATAGTTCAAC+CGG + chr4_1:54239723-54239742 Msa0556160:CDS 35.0%
ATAATAAGTACAGAGGAGTG+AGG + chr4_1:54239845-54239864 Msa0556160:CDS 35.0%
GACAAGTGGAAAATTAAGCT+TGG - chr4_1:54240010-54240029 None:intergenic 35.0%
AGAAGTGGTTGTTCATGTAA+AGG + chr4_1:54240065-54240084 Msa0556160:CDS 35.0%
!! GATTCTTCTGATTCTAGAAC+AGG + chr4_1:54240192-54240211 Msa0556160:CDS 35.0%
GATGACTGAGAGTTCTTGAT+CGG - chr4_1:54239647-54239666 None:intergenic 40.0%
TGCAACATAGCAGGATGTTT+AGG + chr4_1:54239772-54239791 Msa0556160:CDS 40.0%
TAAAGGTTCCAAGCCAAACA+CGG - chr4_1:54239924-54239943 None:intergenic 40.0%
! GGAAAATTAAGCTTGGCTCT+GGG - chr4_1:54240003-54240022 None:intergenic 40.0%
TGGAAAATTAAGCTTGGCTC+TGG - chr4_1:54240004-54240023 None:intergenic 40.0%
TTAAGGGATTCATCGACAAG+TGG - chr4_1:54240024-54240043 None:intergenic 40.0%
TTCCTCAACAGTACGCTTAA+GGG - chr4_1:54240040-54240059 None:intergenic 40.0%
ACATGAACAACCACTTCTTC+TGG - chr4_1:54240063-54240082 None:intergenic 40.0%
GATGACTGAGAGTTCTTGAT+CGG - chr4_1:54239647-54239666 None:intergenic 40.0%
TGCAACATAGCAGGATGTTT+AGG + chr4_1:54239772-54239791 Msa0556160:CDS 40.0%
TAAAGGTTCCAAGCCAAACA+CGG - chr4_1:54239924-54239943 None:intergenic 40.0%
! GGAAAATTAAGCTTGGCTCT+GGG - chr4_1:54240003-54240022 None:intergenic 40.0%
TGGAAAATTAAGCTTGGCTC+TGG - chr4_1:54240004-54240023 None:intergenic 40.0%
TTAAGGGATTCATCGACAAG+TGG - chr4_1:54240024-54240043 None:intergenic 40.0%
TTCCTCAACAGTACGCTTAA+GGG - chr4_1:54240040-54240059 None:intergenic 40.0%
ACATGAACAACCACTTCTTC+TGG - chr4_1:54240063-54240082 None:intergenic 40.0%
TGCTATGTTGCATTCACGAC+AGG - chr4_1:54239764-54239783 None:intergenic 45.0%
TGTCGTGAATGCAACATAGC+AGG + chr4_1:54239763-54239782 Msa0556160:CDS 45.0%
!! TTGGCTTGGAACCTTTACCA+CGG + chr4_1:54239927-54239946 Msa0556160:CDS 45.0%
ATCCCTTAAGCGTACTGTTG+AGG + chr4_1:54240035-54240054 Msa0556160:CDS 45.0%
GTTCCTCAACAGTACGCTTA+AGG - chr4_1:54240041-54240060 None:intergenic 45.0%
TGTTGAGGAACCAGAAGAAG+TGG + chr4_1:54240050-54240069 Msa0556160:CDS 45.0%
TGCTATGTTGCATTCACGAC+AGG - chr4_1:54239764-54239783 None:intergenic 45.0%
TGTCGTGAATGCAACATAGC+AGG + chr4_1:54239763-54239782 Msa0556160:CDS 45.0%
!! TTGGCTTGGAACCTTTACCA+CGG + chr4_1:54239927-54239946 Msa0556160:CDS 45.0%
ATCCCTTAAGCGTACTGTTG+AGG + chr4_1:54240035-54240054 Msa0556160:CDS 45.0%
GTTCCTCAACAGTACGCTTA+AGG - chr4_1:54240041-54240060 None:intergenic 45.0%
TGTTGAGGAACCAGAAGAAG+TGG + chr4_1:54240050-54240069 Msa0556160:CDS 45.0%
GAGTTCTTGATCGGAGGTGA+GGG - chr4_1:54239638-54239657 None:intergenic 50.0%
AGAGTTCTTGATCGGAGGTG+AGG - chr4_1:54239639-54239658 None:intergenic 50.0%
GACTGAGAGTTCTTGATCGG+AGG - chr4_1:54239644-54239663 None:intergenic 50.0%
GCCTTAACCAACGTAGTCTC+CGG + chr4_1:54239673-54239692 Msa0556160:CDS 50.0%
! ACCGGAGACTACGTTGGTTA+AGG - chr4_1:54239677-54239696 None:intergenic 50.0%
AGTTCAACCGGCAGTGAACA+TGG + chr4_1:54239735-54239754 Msa0556160:CDS 50.0%
CAGGTTTCCATGTTCACTGC+CGG - chr4_1:54239745-54239764 None:intergenic 50.0%
GCAGAGACCATGGGGAAAAT+GGG + chr4_1:54239867-54239886 Msa0556160:CDS 50.0%
GAGTTCTTGATCGGAGGTGA+GGG - chr4_1:54239638-54239657 None:intergenic 50.0%
AGAGTTCTTGATCGGAGGTG+AGG - chr4_1:54239639-54239658 None:intergenic 50.0%
GACTGAGAGTTCTTGATCGG+AGG - chr4_1:54239644-54239663 None:intergenic 50.0%
GCCTTAACCAACGTAGTCTC+CGG + chr4_1:54239673-54239692 Msa0556160:CDS 50.0%
! ACCGGAGACTACGTTGGTTA+AGG - chr4_1:54239677-54239696 None:intergenic 50.0%
AGTTCAACCGGCAGTGAACA+TGG + chr4_1:54239735-54239754 Msa0556160:CDS 50.0%
CAGGTTTCCATGTTCACTGC+CGG - chr4_1:54239745-54239764 None:intergenic 50.0%
GCAGAGACCATGGGGAAAAT+GGG + chr4_1:54239867-54239886 Msa0556160:CDS 50.0%
TTCTTGATCGGAGGTGAGGG+TGG - chr4_1:54239635-54239654 None:intergenic 55.0%
GGTAGAACCGGAGACTACGT+TGG - chr4_1:54239683-54239702 None:intergenic 55.0%
AGGAGTGAGGCAGAGACCAT+GGG + chr4_1:54239858-54239877 Msa0556160:CDS 55.0%
GGCAGAGACCATGGGGAAAA+TGG + chr4_1:54239866-54239885 Msa0556160:CDS 55.0%
! TCAGCAGCCCATTTTCCCCA+TGG - chr4_1:54239877-54239896 None:intergenic 55.0%
! CAAACACGGACTGCACGTCT+CGG - chr4_1:54239910-54239929 None:intergenic 55.0%
GCTTGGAACCTTTACCACGG+CGG + chr4_1:54239930-54239949 Msa0556160:CDS 55.0%
AATGCCGCTATCGAGTTCCG+CGG + chr4_1:54239976-54239995 Msa0556160:CDS 55.0%
TTCTTGATCGGAGGTGAGGG+TGG - chr4_1:54239635-54239654 None:intergenic 55.0%
GGTAGAACCGGAGACTACGT+TGG - chr4_1:54239683-54239702 None:intergenic 55.0%
AGGAGTGAGGCAGAGACCAT+GGG + chr4_1:54239858-54239877 Msa0556160:CDS 55.0%
GGCAGAGACCATGGGGAAAA+TGG + chr4_1:54239866-54239885 Msa0556160:CDS 55.0%
! TCAGCAGCCCATTTTCCCCA+TGG - chr4_1:54239877-54239896 None:intergenic 55.0%
! CAAACACGGACTGCACGTCT+CGG - chr4_1:54239910-54239929 None:intergenic 55.0%
GCTTGGAACCTTTACCACGG+CGG + chr4_1:54239930-54239949 Msa0556160:CDS 55.0%
AATGCCGCTATCGAGTTCCG+CGG + chr4_1:54239976-54239995 Msa0556160:CDS 55.0%
TTGATCGGAGGTGAGGGTGG+TGG - chr4_1:54239632-54239651 None:intergenic 60.0%
TCCGGTTCTACCTCCACCGT+GGG + chr4_1:54239691-54239710 Msa0556160:CDS 60.0%
TCCCACGGTGGAGGTAGAAC+CGG - chr4_1:54239695-54239714 None:intergenic 60.0%
CTCTAAGCCGCTGCTTCCCA+CGG - chr4_1:54239710-54239729 None:intergenic 60.0%
GAGGAGTGAGGCAGAGACCA+TGG + chr4_1:54239857-54239876 Msa0556160:CDS 60.0%
GGAGTGAGGCAGAGACCATG+GGG + chr4_1:54239859-54239878 Msa0556160:CDS 60.0%
CGAGACGTGCAGTCCGTGTT+TGG + chr4_1:54239908-54239927 Msa0556160:CDS 60.0%
CGTGCAGTCCGTGTTTGGCT+TGG + chr4_1:54239913-54239932 Msa0556160:CDS 60.0%
TGGAACCTTTACCACGGCGG+AGG + chr4_1:54239933-54239952 Msa0556160:CDS 60.0%
AACCTTTACCACGGCGGAGG+AGG + chr4_1:54239936-54239955 Msa0556160:CDS 60.0%
ATGCCGCTATCGAGTTCCGC+GGG + chr4_1:54239977-54239996 Msa0556160:CDS 60.0%
TTGATCGGAGGTGAGGGTGG+TGG - chr4_1:54239632-54239651 None:intergenic 60.0%
TCCGGTTCTACCTCCACCGT+GGG + chr4_1:54239691-54239710 Msa0556160:CDS 60.0%
TCCCACGGTGGAGGTAGAAC+CGG - chr4_1:54239695-54239714 None:intergenic 60.0%
CTCTAAGCCGCTGCTTCCCA+CGG - chr4_1:54239710-54239729 None:intergenic 60.0%
GAGGAGTGAGGCAGAGACCA+TGG + chr4_1:54239857-54239876 Msa0556160:CDS 60.0%
GGAGTGAGGCAGAGACCATG+GGG + chr4_1:54239859-54239878 Msa0556160:CDS 60.0%
CGAGACGTGCAGTCCGTGTT+TGG + chr4_1:54239908-54239927 Msa0556160:CDS 60.0%
CGTGCAGTCCGTGTTTGGCT+TGG + chr4_1:54239913-54239932 Msa0556160:CDS 60.0%
TGGAACCTTTACCACGGCGG+AGG + chr4_1:54239933-54239952 Msa0556160:CDS 60.0%
AACCTTTACCACGGCGGAGG+AGG + chr4_1:54239936-54239955 Msa0556160:CDS 60.0%
ATGCCGCTATCGAGTTCCGC+GGG + chr4_1:54239977-54239996 Msa0556160:CDS 60.0%
!! GGTGAGGGTGGTGGTGGAGA+AGG - chr4_1:54239623-54239642 None:intergenic 65.0%
! ATCGGAGGTGAGGGTGGTGG+TGG - chr4_1:54239629-54239648 None:intergenic 65.0%
CTCCGGTTCTACCTCCACCG+TGG + chr4_1:54239690-54239709 Msa0556160:CDS 65.0%
ACCTCCACCGTGGGAAGCAG+CGG + chr4_1:54239700-54239719 Msa0556160:CDS 65.0%
TAAGCCGCTGCTTCCCACGG+TGG - chr4_1:54239707-54239726 None:intergenic 65.0%
AGCCTCCTCCGCCGTGGTAA+AGG - chr4_1:54239941-54239960 None:intergenic 65.0%
!! TAAGCTTGGCTCTGGGCCCG+CGG - chr4_1:54239996-54240015 None:intergenic 65.0%
!! GGTGAGGGTGGTGGTGGAGA+AGG - chr4_1:54239623-54239642 None:intergenic 65.0%
! ATCGGAGGTGAGGGTGGTGG+TGG - chr4_1:54239629-54239648 None:intergenic 65.0%
CTCCGGTTCTACCTCCACCG+TGG + chr4_1:54239690-54239709 Msa0556160:CDS 65.0%
ACCTCCACCGTGGGAAGCAG+CGG + chr4_1:54239700-54239719 Msa0556160:CDS 65.0%
TAAGCCGCTGCTTCCCACGG+TGG - chr4_1:54239707-54239726 None:intergenic 65.0%
AGCCTCCTCCGCCGTGGTAA+AGG - chr4_1:54239941-54239960 None:intergenic 65.0%
!! TAAGCTTGGCTCTGGGCCCG+CGG - chr4_1:54239996-54240015 None:intergenic 65.0%
TCTAGCAGCCTCCTCCGCCG+TGG - chr4_1:54239947-54239966 None:intergenic 70.0%
GGGCCCGCGGAACTCGATAG+CGG - chr4_1:54239983-54240002 None:intergenic 70.0%
TCTAGCAGCCTCCTCCGCCG+TGG - chr4_1:54239947-54239966 None:intergenic 70.0%
GGGCCCGCGGAACTCGATAG+CGG - chr4_1:54239983-54240002 None:intergenic 70.0%
GCCGCTGCTTCCCACGGTGG+AGG - chr4_1:54239704-54239723 None:intergenic 75.0%
GCCGCTGCTTCCCACGGTGG+AGG - chr4_1:54239704-54239723 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54239610 54240230 54239610 ID=Msa0556160;Name=Msa0556160
chr4_1 mRNA 54239610 54240230 54239610 ID=Msa0556160-mRNA-1;Parent=Msa0556160;Name=Msa0556160-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|206
chr4_1 exon 54239610 54240230 54239610 ID=Msa0556160-mRNA-1:exon:15940;Parent=Msa0556160-mRNA-1
chr4_1 CDS 54239610 54240230 54239610 ID=Msa0556160-mRNA-1:cds;Parent=Msa0556160-mRNA-1
Gene Sequence

>Msa0556160

ATGAATTGCGCCTTCTCCACCACCACCCTCACCTCCGATCAAGAACTCTCAGTCATCGTCGCTGCCTTAACCAACGTAGTCTCCGGTTCTACCTCCACCGTGGGAAGCAGCGGCTTAGAGCAAATAGTTCAACCGGCAGTGAACATGGAAACCTGTCGTGAATGCAACATAGCAGGATGTTTAGGATGCAATTTCTTCCCTGAAGAGAAAAAACCAAAACAAAGAAGAGCTAAGAATAATAAGTACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCTGCTGAGATTCGTGATCCGAGACGTGCAGTCCGTGTTTGGCTTGGAACCTTTACCACGGCGGAGGAGGCTGCTAGAGCTTACGACAATGCCGCTATCGAGTTCCGCGGGCCCAGAGCCAAGCTTAATTTTCCACTTGTCGATGAATCCCTTAAGCGTACTGTTGAGGAACCAGAAGAAGTGGTTGTTCATGTAAAGGATGAGAATATGAATGAAGAAATGCAAATTGGGAATAATTGGGAATGTGATTTTTGGGATAGTATTGGGGAAGAAGCTGATTTTCAACAACTTATGAGGTTTATGGATTCTTCTGATTCTAGAACAGGAAACACTTTTAATTAG
Protein sequence

>Msa0556160

MNCAFSTTTLTSDQELSVIVAALTNVVSGSTSTVGSSGLEQIVQPAVNMETCRECNIAGCLGCNFFPEEKKPKQRRAKNNKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKRTVEEPEEVVVHVKDENMNEEMQIGNNWECDFWDSIGEEADFQQLMRFMDSSDSRTGNTFN*