AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557130 MtrunA17_Chr4g0046151 97.260 365 10 0 1 365 1 365 0.0 744
Msa0557130 MtrunA17_Chr2g0283191 61.173 358 130 5 15 366 16 370 8.40e-168 473
Msa0557130 MtrunA17_Chr5g0432101 46.269 335 169 4 31 363 28 353 6.11e-105 313
Msa0557130 MtrunA17_Chr1g0156931 43.218 317 171 3 36 352 41 348 9.36e-96 289
Msa0557130 MtrunA17_Chr1g0156921 39.943 348 195 5 12 354 15 353 2.55e-94 286
Msa0557130 MtrunA17_Chr5g0405831 42.500 360 193 8 9 366 17 364 1.34e-92 281
Msa0557130 MtrunA17_Chr5g0405821 43.653 323 170 6 36 355 43 356 1.49e-92 281
Msa0557130 MtrunA17_Chr3g0120861 42.522 341 171 5 32 364 34 357 3.93e-91 277
Msa0557130 MtrunA17_Chr8g0341001 41.994 331 180 5 36 364 32 352 1.90e-90 275
Msa0557130 MtrunA17_Chr8g0371491 40.361 332 186 4 36 366 36 356 2.34e-89 273
Msa0557130 MtrunA17_Chr5g0438641 42.363 347 175 6 9 347 7 336 1.62e-88 270
Msa0557130 MtrunA17_Chr3g0105401 40.113 354 198 8 10 359 4 347 4.85e-88 269
Msa0557130 MtrunA17_Chr5g0438621 39.489 352 202 5 9 359 3 344 1.28e-87 268
Msa0557130 MtrunA17_Chr1g0156901 39.143 350 197 3 11 352 17 358 2.11e-87 268
Msa0557130 MtrunA17_Chr5g0437421 42.769 325 170 5 32 349 28 343 3.20e-87 267
Msa0557130 MtrunA17_Chr1g0156891 38.904 365 206 6 7 366 11 363 3.91e-87 267
Msa0557130 MtrunA17_Chr3g0142941 41.956 317 176 2 36 352 47 355 6.80e-87 267
Msa0557130 MtrunA17_Chr5g0438631 38.968 349 202 6 13 359 4 343 7.03e-87 266
Msa0557130 MtrunA17_Chr8g0371481 41.141 333 183 5 36 366 41 362 6.59e-86 264
Msa0557130 MtrunA17_Chr1g0156911 40.694 317 180 2 36 352 37 345 9.95e-86 263
Msa0557130 MtrunA17_Chr2g0330781 38.973 331 185 5 36 364 31 346 1.36e-84 260
Msa0557130 MtrunA17_Chr8g0371471 41.195 318 178 4 36 352 41 350 1.65e-84 260
Msa0557130 MtrunA17_Chr3g0142921 38.871 319 186 3 36 353 36 346 4.52e-84 259
Msa0557130 MtrunA17_Chr2g0320671 38.393 336 195 6 16 348 9 335 4.58e-76 238
Msa0557130 MtrunA17_Chr1g0157001 37.942 311 182 4 41 350 41 341 3.41e-68 219
Msa0557130 MtrunA17_Chr4g0027521 36.494 348 206 6 20 363 12 348 5.81e-68 218
Msa0557130 MtrunA17_Chr1g0182811 34.582 347 206 8 10 350 11 342 2.91e-63 206
Msa0557130 MtrunA17_Chr7g0275021 36.025 322 193 6 30 348 28 339 4.05e-62 203
Msa0557130 MtrunA17_Chr7g0275011 34.393 346 202 10 10 348 12 339 1.88e-61 201
Msa0557130 MtrunA17_Chr3g0099161 34.018 341 197 8 33 365 89 409 4.69e-58 194
Msa0557130 MtrunA17_Chr6g0457921 36.306 314 186 7 39 348 32 335 2.27e-57 191
Msa0557130 MtrunA17_Chr1g0189901 34.494 316 194 6 36 348 31 336 3.76e-57 190
Msa0557130 MtrunA17_Chr2g0301641 34.188 351 209 9 10 350 14 352 4.26e-57 191
Msa0557130 MtrunA17_Chr7g0274991 33.333 348 211 10 20 360 15 348 1.13e-56 189
Msa0557130 MtrunA17_Chr3g0099151 34.375 352 205 10 10 348 57 395 3.07e-56 189
Msa0557130 MtrunA17_Chr4g0008851 31.445 353 222 7 12 361 10 345 9.65e-56 186
Msa0557130 MtrunA17_Chr5g0444401 35.514 321 186 7 36 348 28 335 7.66e-55 184
Msa0557130 MtrunA17_Chr8g0344941 36.000 325 186 9 36 352 41 351 1.78e-54 183
Msa0557130 MtrunA17_Chr7g0215961 33.799 358 202 11 13 365 8 335 3.00e-54 182
Msa0557130 MtrunA17_Chr1g0189891 33.022 321 187 10 36 348 29 329 3.46e-53 179
Msa0557130 MtrunA17_Chr1g0189931 32.622 328 184 7 36 348 32 337 2.38e-52 177
Msa0557130 MtrunA17_Chr7g0275001 33.138 341 211 9 22 357 10 338 3.20e-52 177
Msa0557130 MtrunA17_Chr3g0099231 32.059 340 204 8 33 365 25 344 1.19e-51 176
Msa0557130 MtrunA17_Chr5g0396511 32.381 315 194 8 38 346 48 349 3.49e-51 175
Msa0557130 MtrunA17_Chr8g0374101 31.608 367 225 12 10 362 6 360 3.90e-51 174
Msa0557130 MtrunA17_Chr2g0294311 31.319 364 223 11 10 359 5 355 5.31e-50 171
Msa0557130 MtrunA17_Chr4g0017431 32.558 344 209 10 15 350 10 338 8.04e-50 171
Msa0557130 MtrunA17_Chr8g0380041 31.054 351 219 11 15 357 7 342 1.39e-48 167
Msa0557130 MtrunA17_Chr8g0349341 33.333 348 198 11 16 348 10 338 1.76e-48 167
Msa0557130 MtrunA17_Chr2g0294301 31.871 342 208 10 33 366 32 356 3.34e-48 167
Msa0557130 MtrunA17_Chr3g0086641 32.164 342 209 11 16 346 11 340 9.82e-48 166
Msa0557130 MtrunA17_Chr3g0092131 31.534 352 216 12 16 359 3 337 1.36e-47 165
Msa0557130 MtrunA17_Chr4g0060811 32.416 327 202 10 38 359 29 341 3.84e-47 164
Msa0557130 MtrunA17_Chr4g0068441 31.429 350 219 9 13 357 15 348 4.22e-47 164
Msa0557130 MtrunA17_Chr2g0285061 30.321 343 224 8 10 348 6 337 4.57e-47 164
Msa0557130 MtrunA17_Chr8g0349321 33.127 323 181 11 36 346 37 336 3.06e-46 161
Msa0557130 MtrunA17_Chr3g0077571 29.912 341 221 9 8 346 4 328 1.08e-45 160
Msa0557130 MtrunA17_Chr8g0344931 31.692 325 189 10 33 348 34 334 6.03e-44 155
Msa0557130 MtrunA17_Chr3g0077581 28.775 351 222 10 16 348 4 344 1.56e-43 154
Msa0557130 MtrunA17_Chr2g0284921 29.052 327 204 9 27 346 25 330 1.11e-42 152
Msa0557130 MtrunA17_Chr3g0131321 30.548 347 223 7 8 346 4 340 3.10e-42 151
Msa0557130 MtrunA17_Chr2g0284951 31.395 344 207 12 9 348 9 327 5.74e-42 150
Msa0557130 MtrunA17_Chr5g0434621 30.721 319 196 11 38 348 27 328 8.51e-42 149
Msa0557130 MtrunA17_Chr7g0229591 36.041 197 121 1 18 209 7 203 2.88e-40 141
Msa0557130 MtrunA17_Chr8g0349301 33.677 291 170 10 36 323 37 307 7.08e-40 143
Msa0557130 MtrunA17_Chr8g0370951 30.548 347 214 13 15 348 9 341 1.03e-39 144
Msa0557130 MtrunA17_Chr4g0027571 33.621 232 128 6 139 364 3 214 2.34e-39 139
Msa0557130 MtrunA17_Chr5g0420811 29.248 359 227 11 10 364 6 341 1.34e-38 140
Msa0557130 MtrunA17_Chr2g0284991 28.909 339 217 10 23 357 20 338 5.17e-38 140
Msa0557130 MtrunA17_Chr2g0285001 29.598 348 215 13 15 355 13 337 1.76e-37 138
Msa0557130 MtrunA17_Chr3g0085881 29.874 318 193 11 36 348 33 325 5.84e-37 136
Msa0557130 MtrunA17_Chr8g0349331 31.464 321 165 9 35 348 34 306 1.40e-36 135
Msa0557130 MtrunA17_Chr8g0370981 27.551 392 213 11 11 348 18 392 6.41e-36 135
Msa0557130 MtrunA17_Chr8g0380031 28.125 320 204 10 31 346 79 376 7.70e-35 132
Msa0557130 MtrunA17_Chr3g0085231 29.464 336 210 10 15 346 10 322 1.37e-34 130
Msa0557130 MtrunA17_Chr2g0284941 26.966 356 210 11 11 357 3 317 5.02e-34 129
Msa0557130 MtrunA17_Chr7g0271551 29.474 380 219 16 3 362 2 352 1.43e-31 122
Msa0557130 MtrunA17_Chr1g0160031 29.695 394 203 18 14 366 12 372 1.48e-31 122
Msa0557130 MtrunA17_Chr2g0283531 31.322 348 201 15 36 365 31 358 4.11e-31 121
Msa0557130 MtrunA17_Chr2g0283481 31.445 353 202 16 32 365 43 374 4.66e-30 119
Msa0557130 MtrunA17_Chr7g0254461 29.040 396 219 18 12 366 8 382 8.71e-30 118
Msa0557130 MtrunA17_Chr3g0104821 30.030 333 201 13 36 349 44 363 1.20e-29 117
Msa0557130 MtrunA17_Chr1g0160011 29.306 389 210 19 1 353 4 363 2.81e-28 114
Msa0557130 MtrunA17_Chr7g0229581 38.509 161 73 6 210 364 7 147 3.90e-28 107
Msa0557130 MtrunA17_Chr7g0266061 28.947 342 206 15 31 363 37 350 4.39e-28 112
Msa0557130 MtrunA17_Chr8g0381581 27.225 382 226 14 12 365 16 373 7.53e-28 112
Msa0557130 MtrunA17_Chr1g0159991 29.351 385 215 19 10 365 10 366 1.08e-27 112
Msa0557130 MtrunA17_Chr6g0450701 29.775 356 193 13 31 357 34 361 9.04e-27 109
Msa0557130 MtrunA17_Chr4g0057991 26.596 376 234 14 8 358 6 364 1.88e-26 108
Msa0557130 MtrunA17_Chr7g0275291 27.473 364 215 14 12 348 10 351 3.29e-26 108
Msa0557130 MtrunA17_Chr7g0273101 27.378 347 209 15 36 357 29 357 4.46e-26 107
Msa0557130 MtrunA17_Chr6g0463261 39.496 119 72 0 91 209 6 124 1.88e-25 99.8
Msa0557130 MtrunA17_Chr7g0226911 27.720 386 222 17 17 366 11 375 2.41e-25 105
Msa0557130 MtrunA17_Chr6g0469511 42.202 109 63 0 36 144 30 138 5.98e-25 99.0
Msa0557130 MtrunA17_Chr1g0160101 28.721 383 217 17 10 363 16 371 6.83e-25 104
Msa0557130 MtrunA17_Chr8g0347751 27.083 384 221 17 15 365 11 368 8.93e-25 103
Msa0557130 MtrunA17_Chr8g0352901 27.348 362 223 9 11 348 3 348 2.07e-24 102
Msa0557130 MtrunA17_Chr4g0027561 43.243 111 58 1 18 123 7 117 2.21e-24 97.4
Msa0557130 MtrunA17_Chr1g0198351 25.781 384 222 19 9 366 7 353 2.29e-24 102
Msa0557130 MtrunA17_Chr7g0226941 26.790 377 218 15 22 366 19 369 3.19e-24 102
Msa0557130 MtrunA17_Chr6g0450731 26.613 372 221 13 9 359 6 346 4.05e-24 102
Msa0557130 MtrunA17_Chr2g0317261 28.611 360 213 18 10 350 1 335 5.89e-24 101
Msa0557130 MtrunA17_Chr3g0093031 28.190 337 207 14 35 352 29 349 6.65e-24 101
Msa0557130 MtrunA17_Chr1g0159971 28.075 374 217 16 11 353 20 372 1.02e-23 101
Msa0557130 MtrunA17_Chr1g0159981 28.307 378 211 21 10 353 20 371 1.25e-23 100
Msa0557130 MtrunA17_Chr3g0112821 27.628 333 209 12 35 352 29 344 1.31e-23 100
Msa0557130 MtrunA17_Chr0c01g0489581 28.809 361 209 19 10 349 1 334 1.40e-23 100
Msa0557130 MtrunA17_Chr2g0317271 29.178 353 206 18 16 349 7 334 1.98e-23 99.8
Msa0557130 MtrunA17_Chr0c01g0489571 28.809 361 209 19 10 349 1 334 4.25e-23 99.0
Msa0557130 MtrunA17_Chr1g0178941 25.872 344 196 13 34 353 38 346 9.30e-23 97.8
Msa0557130 MtrunA17_Chr6g0450721 26.171 363 232 10 9 359 6 344 1.28e-22 97.4
Msa0557130 MtrunA17_Chr7g0226931 27.342 395 218 15 20 366 16 389 1.31e-22 98.2
Msa0557130 MtrunA17_Chr2g0283511 29.429 333 194 16 41 349 36 351 1.44e-22 97.8
Msa0557130 MtrunA17_Chr1g0198381 26.888 331 195 14 37 353 3 300 1.71e-22 96.7
Msa0557130 MtrunA17_Chr2g0283501 28.367 349 212 15 24 350 19 351 3.92e-22 96.3
Msa0557130 MtrunA17_Chr4g0018571 38.235 170 83 7 197 359 16 170 8.00e-22 91.7
Msa0557130 MtrunA17_Chr1g0178931 25.680 331 211 14 31 353 32 335 1.33e-21 94.4
Msa0557130 MtrunA17_Chr2g0301581 27.405 343 186 12 36 352 34 339 1.86e-21 94.4
Msa0557130 MtrunA17_Chr6g0450711 25.654 382 231 14 9 359 87 446 4.78e-21 94.0
Msa0557130 MtrunA17_Chr1g0189921 51.724 87 41 1 36 122 31 116 1.76e-20 87.0
Msa0557130 MtrunA17_Chr1g0191461 25.000 344 220 13 36 357 31 358 3.05e-20 90.9
Msa0557130 MtrunA17_Chr2g0321991 52.273 88 40 2 36 122 33 119 3.86e-20 85.1
Msa0557130 MtrunA17_Chr2g0301541 26.822 343 188 12 36 352 34 339 1.03e-19 89.4
Msa0557130 MtrunA17_Chr3g0112691 27.794 349 206 16 36 364 30 352 3.54e-19 87.8
Msa0557130 MtrunA17_Chr5g0440501 24.545 220 151 5 136 348 11 222 5.45e-19 85.5
Msa0557130 MtrunA17_Chr8g0370961 25.455 220 145 5 133 348 14 218 4.27e-18 82.8
Msa0557130 MtrunA17_Chr6g0469521 35.821 134 69 4 210 338 31 152 6.89e-18 79.7
Msa0557130 MtrunA17_Chr8g0370971 38.793 116 67 1 11 122 13 128 2.28e-17 79.0
Msa0557130 MtrunA17_Chr3g0096551 26.121 379 225 15 10 352 1 360 3.17e-17 82.4
Msa0557130 MtrunA17_Chr6g0455661 44.037 109 50 4 34 140 29 128 1.17e-16 81.3
Msa0557130 MtrunA17_Chr6g0455661 25.541 231 156 7 131 357 235 453 3.54e-15 76.6
Msa0557130 MtrunA17_Chr8g0339251 26.023 342 209 11 15 337 7 323 1.61e-16 79.7
Msa0557130 MtrunA17_Chr2g0283541 32.571 175 98 7 199 365 122 284 2.26e-16 79.0
Msa0557130 MtrunA17_Chr3g0104831 27.148 291 182 12 78 349 3 282 3.26e-16 78.6
Msa0557130 MtrunA17_Chr4g0018561 45.570 79 39 2 8 86 6 80 8.96e-16 72.4
Msa0557130 MtrunA17_Chr6g0459921 25.862 232 156 7 130 357 123 342 1.65e-15 77.0
Msa0557130 MtrunA17_Chr5g0432081 49.180 61 29 1 303 363 10 68 4.72e-15 69.7
Msa0557130 MtrunA17_Chr2g0308201 50.000 76 37 1 15 90 14 88 3.09e-14 67.8
Msa0557130 MtrunA17_Chr2g0301571 25.000 284 173 10 85 352 36 295 1.41e-12 67.8
Msa0557130 MtrunA17_Chr2g0301551 25.000 284 173 10 85 352 36 295 2.58e-12 67.0
Msa0557130 MtrunA17_Chr3g0104801 36.134 119 67 4 36 147 44 160 7.66e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557130 AT5G45960.1 58.683 334 135 1 31 364 42 372 8.74e-149 425
Msa0557130 AT1G06990.1 44.904 314 167 2 36 349 37 344 2.14e-97 294
Msa0557130 AT1G58430.1 45.426 317 164 4 36 350 35 344 7.79e-97 292
Msa0557130 AT2G31540.1 43.807 331 173 6 36 364 35 354 3.10e-94 286
Msa0557130 AT4G26790.1 43.023 344 170 7 25 360 18 343 5.51e-94 285
Msa0557130 AT4G26790.2 43.023 344 170 7 25 360 18 343 5.51e-94 285
Msa0557130 AT2G30310.1 42.647 340 184 5 15 350 11 343 9.18e-94 284
Msa0557130 AT2G24560.1 42.647 340 184 5 15 350 11 343 6.29e-93 282
Msa0557130 AT1G20120.1 42.462 325 175 4 36 356 78 394 2.56e-91 280
Msa0557130 AT2G30220.1 42.947 319 173 4 36 352 33 344 1.56e-90 276
Msa0557130 AT2G40250.1 43.711 318 170 3 35 349 35 346 2.12e-90 276
Msa0557130 AT2G04570.1 42.571 350 175 6 9 350 4 335 4.10e-89 272
Msa0557130 AT3G16370.1 42.547 322 175 4 36 355 30 343 1.44e-87 268
Msa0557130 AT1G75900.1 40.881 318 178 4 36 352 43 351 2.38e-85 263
Msa0557130 AT1G75880.2 38.420 367 207 7 6 365 17 371 2.82e-83 258
Msa0557130 AT5G42170.1 38.924 316 181 4 36 350 50 354 1.15e-82 256
Msa0557130 AT1G20132.1 38.994 318 185 3 36 352 61 370 4.26e-82 255
Msa0557130 AT1G75890.2 38.192 343 196 6 15 350 22 355 6.88e-82 254
Msa0557130 AT2G42990.1 38.235 340 195 5 13 347 3 332 9.88e-82 253
Msa0557130 AT1G75890.3 38.192 343 196 6 15 350 51 384 1.23e-81 254
Msa0557130 AT1G75880.1 38.315 368 207 8 6 365 17 372 2.02e-81 253
Msa0557130 AT5G45950.1 39.222 334 190 4 17 350 21 341 7.57e-81 251
Msa0557130 AT3G14820.1 37.119 361 204 6 13 362 3 351 8.27e-80 248
Msa0557130 AT1G75890.1 36.798 356 196 7 15 350 22 368 1.76e-78 246
Msa0557130 AT5G03810.1 37.356 348 202 5 20 363 14 349 2.07e-78 245
Msa0557130 AT5G03820.1 36.592 358 209 6 12 363 8 353 2.92e-77 242
Msa0557130 AT5G03820.2 36.592 358 209 6 12 363 36 381 1.32e-76 241
Msa0557130 AT5G63170.1 40.506 316 165 6 36 349 28 322 1.63e-74 234
Msa0557130 AT3G53100.1 37.349 332 195 6 17 346 12 332 1.06e-73 233
Msa0557130 AT1G59406.1 34.694 343 208 5 13 350 3 334 1.46e-73 232
Msa0557130 AT1G59030.1 34.694 343 208 5 13 350 3 334 1.46e-73 232
Msa0557130 AT1G58725.1 34.694 343 208 5 13 350 3 334 1.46e-73 232
Msa0557130 AT2G24560.2 41.077 297 164 5 15 307 11 300 1.15e-71 226
Msa0557130 AT5G22810.1 38.170 317 184 4 36 348 34 342 6.93e-71 226
Msa0557130 AT1G20130.2 34.451 328 193 6 36 352 184 500 1.29e-69 227
Msa0557130 AT1G20130.1 34.451 328 193 6 36 352 204 520 1.82e-69 227
Msa0557130 AT3G43570.1 32.653 343 186 4 13 350 3 305 2.33e-69 221
Msa0557130 AT1G73610.1 39.009 323 173 5 32 352 31 331 6.41e-69 220
Msa0557130 AT1G58520.3 34.568 324 193 5 28 350 22 327 4.75e-67 215
Msa0557130 AT1G58525.1 34.568 324 193 5 28 350 22 327 4.75e-67 215
Msa0557130 AT1G20135.1 33.918 342 205 6 13 353 6 327 9.81e-63 204
Msa0557130 AT1G23500.1 38.244 353 186 9 8 352 4 332 7.75e-61 199
Msa0557130 AT1G53920.1 32.812 384 220 13 1 364 7 372 9.14e-61 200
Msa0557130 AT1G75920.2 34.483 348 199 8 9 352 8 330 1.75e-60 198
Msa0557130 AT3G04290.1 35.119 336 204 7 16 348 10 334 1.88e-59 196
Msa0557130 AT4G28780.1 33.333 345 217 6 6 348 3 336 1.31e-57 191
Msa0557130 AT1G75910.1 34.925 335 189 7 36 366 28 337 1.79e-57 191
Msa0557130 AT1G75920.1 33.058 363 199 9 9 352 3 340 1.80e-56 188
Msa0557130 AT1G75930.1 36.207 348 187 10 14 350 5 328 6.50e-56 186
Msa0557130 AT5G33370.1 32.849 344 214 7 8 348 6 335 4.35e-55 185
Msa0557130 AT5G18430.1 33.148 359 215 7 10 360 3 344 8.82e-55 184
Msa0557130 AT4G10950.2 32.484 314 199 7 36 346 71 374 1.12e-54 185
Msa0557130 AT3G50400.1 31.944 360 223 10 11 357 4 354 1.73e-54 184
Msa0557130 AT5G08460.1 32.923 325 207 6 36 357 49 365 6.10e-53 180
Msa0557130 AT4G10950.1 32.484 314 195 8 36 346 71 370 2.69e-52 179
Msa0557130 AT2G31550.1 40.359 223 121 6 143 364 2 213 2.82e-52 173
Msa0557130 AT5G41890.1 32.676 355 215 11 20 362 17 359 1.88e-51 176
Msa0557130 AT3G43550.1 32.881 295 183 4 13 303 3 286 4.05e-51 172
Msa0557130 AT2G23540.1 31.515 330 208 9 36 357 48 367 9.04e-50 172
Msa0557130 AT1G75920.4 32.781 302 184 5 53 352 18 302 9.32e-50 169
Msa0557130 AT1G29670.1 32.565 347 213 10 17 357 11 342 2.40e-49 170
Msa0557130 AT1G29670.2 32.565 347 213 10 17 357 79 410 1.37e-48 169
Msa0557130 AT1G29660.1 29.917 361 231 11 1 357 1 343 6.92e-47 163
Msa0557130 AT1G74460.1 32.209 326 198 10 38 356 25 334 1.06e-46 163
Msa0557130 AT1G71250.1 30.114 352 225 9 12 357 17 353 3.07e-46 162
Msa0557130 AT5G45670.1 30.259 347 225 8 15 357 8 341 8.33e-46 160
Msa0557130 AT1G71691.2 31.471 340 208 11 24 357 43 363 6.42e-45 159
Msa0557130 AT5G15720.1 32.432 333 198 11 34 353 28 346 1.48e-44 157
Msa0557130 AT1G33811.1 28.286 350 235 8 8 348 2 344 2.16e-44 157
Msa0557130 AT1G75920.3 30.172 348 183 9 9 352 8 299 2.71e-44 155
Msa0557130 AT5G55050.1 31.054 351 214 10 27 366 27 360 1.01e-43 155
Msa0557130 AT5G33370.2 36.709 237 142 4 8 241 6 237 1.21e-43 154
Msa0557130 AT5G37690.1 27.616 344 230 9 10 348 1 330 2.17e-43 154
Msa0557130 AT1G71120.1 32.432 333 199 13 25 350 20 333 2.28e-43 154
Msa0557130 AT4G18970.1 30.091 329 211 10 34 357 26 340 1.46e-42 152
Msa0557130 AT4G18970.2 30.091 329 211 10 34 357 26 340 5.86e-42 151
Msa0557130 AT3G14225.1 30.769 338 209 9 28 352 29 354 1.13e-41 150
Msa0557130 AT3G14225.2 30.240 334 212 8 28 352 29 350 1.86e-41 149
Msa0557130 AT2G19010.1 30.347 346 208 12 16 355 10 328 1.33e-40 146
Msa0557130 AT5G40990.1 31.288 326 203 8 32 348 33 346 1.37e-40 147
Msa0557130 AT2G19050.1 30.675 326 189 12 38 355 33 329 1.46e-40 146
Msa0557130 AT2G19010.2 31.307 329 193 12 33 355 57 358 1.95e-40 147
Msa0557130 AT2G19060.1 30.818 318 189 13 38 348 32 325 1.03e-39 144
Msa0557130 AT5G37690.2 27.035 344 224 10 10 348 1 322 2.29e-39 143
Msa0557130 AT1G53940.2 30.303 330 209 8 32 352 35 352 8.70e-39 142
Msa0557130 AT4G16230.1 36.404 228 136 5 9 231 4 227 1.51e-37 135
Msa0557130 AT1G53990.1 30.539 334 196 10 32 352 31 341 2.40e-37 138
Msa0557130 AT2G03980.2 31.627 332 200 10 36 358 43 356 2.40e-37 138
Msa0557130 AT2G03980.3 31.627 332 200 10 36 358 43 356 2.40e-37 138
Msa0557130 AT2G03980.1 31.627 332 200 10 36 358 43 356 2.40e-37 138
Msa0557130 AT2G03980.4 31.627 332 200 10 36 358 43 356 2.40e-37 138
Msa0557130 AT4G30140.1 29.102 323 198 11 38 356 35 330 3.07e-33 127
Msa0557130 AT2G19050.2 30.588 255 156 8 38 289 33 269 2.97e-32 122
Msa0557130 AT1G54010.1 27.882 373 220 15 9 363 8 349 4.68e-31 122
Msa0557130 AT1G54790.3 28.877 374 219 14 10 357 8 360 5.63e-31 121
Msa0557130 AT5G15720.2 32.404 287 157 11 34 293 28 304 1.05e-30 119
Msa0557130 AT2G04020.1 37.379 206 114 7 36 235 43 239 2.17e-30 117
Msa0557130 AT2G04020.2 37.561 205 113 7 36 234 43 238 5.49e-30 117
Msa0557130 AT1G56670.1 29.692 357 213 14 10 348 11 347 1.28e-29 117
Msa0557130 AT1G71691.3 30.070 286 177 10 24 303 43 311 2.82e-29 115
Msa0557130 AT1G53940.1 31.538 260 164 7 32 284 35 287 8.98e-29 114
Msa0557130 AT1G71691.1 28.058 278 176 10 86 357 3 262 1.08e-28 113
Msa0557130 AT1G31550.2 29.380 371 229 14 1 352 1 357 1.70e-28 115
Msa0557130 AT5G45910.1 30.471 361 199 19 33 365 27 363 7.16e-28 112
Msa0557130 AT1G54000.1 27.273 363 222 14 15 363 15 349 9.07e-28 112
Msa0557130 AT1G54020.2 26.158 367 228 14 8 363 7 341 1.71e-27 111
Msa0557130 AT1G09390.1 28.954 373 211 15 1 348 1 344 2.15e-27 111
Msa0557130 AT3G14220.1 26.923 364 229 16 9 363 10 345 5.18e-27 110
Msa0557130 AT5G15720.3 28.571 280 175 10 87 353 48 315 5.35e-27 109
Msa0557130 AT5G03610.1 26.596 376 226 19 9 362 7 354 1.11e-26 109
Msa0557130 AT1G31550.1 29.076 368 231 13 1 352 1 354 1.63e-26 109
Msa0557130 AT1G54030.1 26.332 319 199 11 34 348 50 336 1.99e-26 109
Msa0557130 AT5G14450.1 25.654 382 228 14 15 365 16 372 3.28e-26 108
Msa0557130 AT4G01130.1 27.049 366 214 15 30 365 28 370 4.12e-26 108
Msa0557130 AT2G27360.1 30.270 370 220 14 1 349 1 353 3.24e-25 105
Msa0557130 AT3G48460.1 26.404 356 226 13 13 349 15 353 4.20e-25 105
Msa0557130 AT1G67830.1 27.548 363 199 14 36 364 30 362 5.61e-25 104
Msa0557130 AT1G28580.1 28.729 362 218 15 12 350 13 357 8.19e-25 104
Msa0557130 AT1G54790.1 27.273 341 209 14 40 357 35 359 1.57e-24 103
Msa0557130 AT3G09930.2 25.073 343 212 16 33 359 36 349 2.45e-24 102
Msa0557130 AT3G09930.1 25.073 343 212 16 33 359 36 349 2.45e-24 102
Msa0557130 AT3G05180.1 28.448 348 209 15 36 360 36 366 3.50e-24 102
Msa0557130 AT1G28600.1 28.721 383 221 17 8 365 3 358 1.31e-23 101
Msa0557130 AT1G28610.2 30.137 365 214 14 8 349 3 349 2.24e-23 100
Msa0557130 AT1G28590.1 29.111 371 227 15 1 350 1 356 1.08e-22 98.6
Msa0557130 AT1G28570.1 28.571 371 215 18 9 350 5 354 2.35e-22 97.8
Msa0557130 AT1G28670.1 27.989 368 229 13 8 352 4 358 3.36e-22 97.1
Msa0557130 AT1G28640.1 27.446 368 230 14 8 352 4 357 5.25e-22 96.7
Msa0557130 AT1G28650.1 27.568 370 231 15 6 352 4 359 1.39e-21 95.5
Msa0557130 AT3G26430.1 26.471 374 226 14 10 353 5 359 2.28e-21 94.7
Msa0557130 AT1G28660.1 27.100 369 230 14 8 352 4 357 6.77e-21 93.2
Msa0557130 AT3G14210.1 27.492 331 196 16 36 352 36 336 3.63e-20 91.3
Msa0557130 AT3G62280.1 26.710 307 186 11 74 366 71 352 4.25e-20 90.9
Msa0557130 AT3G27950.1 26.684 386 230 17 8 366 2 361 7.00e-20 90.5
Msa0557130 AT1G56670.2 29.085 306 184 12 11 303 12 297 9.16e-20 89.0
Msa0557130 AT2G36325.1 25.595 336 203 15 33 353 44 347 1.08e-19 89.7
Msa0557130 AT1G28660.2 27.100 369 229 15 8 352 4 356 1.25e-19 89.7
Msa0557130 AT5G03600.1 24.924 329 208 16 33 353 11 308 4.18e-19 87.4
Msa0557130 AT5G03600.2 25.305 328 208 16 33 353 46 343 4.46e-19 87.8
Msa0557130 AT4G01130.3 24.579 297 180 12 99 365 2 284 1.66e-16 79.7
Msa0557130 AT4G16220.1 43.519 108 57 2 15 122 11 114 4.75e-16 77.4
Msa0557130 AT1G54030.2 25.468 267 165 9 34 296 50 286 8.81e-16 77.8
Msa0557130 AT4G01130.2 25.773 291 179 12 30 303 28 298 6.85e-15 75.5
Msa0557130 AT1G53970.2 45.122 82 41 3 32 111 16 95 2.15e-12 63.2
Msa0557130 AT1G53970.1 45.122 82 41 3 32 111 16 95 2.15e-12 63.2
Msa0557130 AT4G16233.1 34.286 105 61 4 254 357 13 110 8.58e-12 62.8

Find 79 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATGTCATTTAGAATTTA+TGG 0.074659 4_1:-55432080 Msa0557130:intron
AAAGTATGTGCTTAATTAAT+TGG 0.111626 4_1:-55430901 Msa0557130:three_prime_UTR
TTGGGATGTTTCAATATTAA+AGG 0.169699 4_1:-55430882 Msa0557130:three_prime_UTR
ATTCAAGGGCATGGAAATTT+TGG 0.186046 4_1:-55431808 Msa0557130:intron
TATTCCATTTGCTTTGATAT+TGG 0.197472 4_1:+55433561 None:intergenic
AGAGCTGGTGCCACCATATT+TGG 0.198902 4_1:-55434261 Msa0557130:CDS
ATCCGTCAAAATATGTCTTT+TGG 0.226927 4_1:-55431208 Msa0557130:CDS
ATTCCATTTGCTTTGATATT+GGG 0.236645 4_1:+55433562 None:intergenic
TTTATGTAGTTGTTGTTTCC+TGG 0.257265 4_1:+55434797 None:intergenic
ATGGTGGCACCAGCTCTTTC+AGG 0.274435 4_1:+55434267 None:intergenic
AGCTCTTCATCACTAAGATT+TGG 0.323380 4_1:+55434236 None:intergenic
ATAATATATAAATATAATAT+TGG 0.327515 4_1:+55431088 None:intergenic
CTAAGATTTGGATCCAAATA+TGG 0.329834 4_1:+55434248 None:intergenic
ACTTGTACAGCTTCATATTT+AGG 0.331815 4_1:-55434290 Msa0557130:intron
TGGGATGTTTCAATATTAAA+GGG 0.335516 4_1:-55430881 Msa0557130:three_prime_UTR
TCTATAAGTTCAGATATAAA+AGG 0.349622 4_1:+55430975 None:intergenic
ATTAATTAAGCACATACTTT+GGG 0.358580 4_1:+55430904 None:intergenic
CCCTTGAATCATGTTAACTA+AGG 0.379655 4_1:+55431822 None:intergenic
TGTGGCGATTTGCGACGAAT+AGG 0.381807 4_1:+55431150 None:intergenic
TTCTATATCATGGAAACCTT+TGG 0.381812 4_1:-55434944 Msa0557130:exon
AAGTATGTGCTTAATTAATT+GGG 0.392361 4_1:-55430900 Msa0557130:three_prime_UTR
AATTAATTAAGCACATACTT+TGG 0.392961 4_1:+55430903 None:intergenic
TCATTGCTCATTCTATATCA+TGG 0.400831 4_1:-55434954 Msa0557130:exon
GCCTCTGCCATATATGTGTT+TGG 0.403550 4_1:-55434836 Msa0557130:CDS
TTATGTAGTTGTTGTTTCCT+GGG 0.416792 4_1:+55434798 None:intergenic
CTTGCTAACAAAAGTCCTAC+TGG 0.428643 4_1:-55434734 Msa0557130:CDS
AAATATAATATTGGATAGCT+AGG 0.433141 4_1:+55431097 None:intergenic
TCACTTGTTGAAGCAAGAAA+TGG 0.434198 4_1:+55433373 None:intergenic
GGAGTCTCCAAACACATATA+TGG 0.440665 4_1:+55434829 None:intergenic
TTATGATATGCCTTCTCTGT+AGG 0.447250 4_1:+55431173 None:intergenic
CCCTTAGTTAACATGATTCA+AGG 0.455114 4_1:-55431823 Msa0557130:CDS
ACGTTCAAGAAGCGCATTGT+TGG 0.468355 4_1:+55431981 None:intergenic
CCTACTGGAAGGTTCTCAAA+TGG 0.468419 4_1:-55434719 Msa0557130:CDS
TTAGCAAGATCTCTACCATA+AGG 0.470945 4_1:+55434749 None:intergenic
GGTCCCAATATCAAAGCAAA+TGG 0.473430 4_1:-55433565 Msa0557130:CDS
TATGATATGCCTTCTCTGTA+GGG 0.477550 4_1:+55431174 None:intergenic
GATCGTGGCTGTTGTGGAAG+TGG 0.479684 4_1:-55431281 Msa0557130:CDS
TTTGTTGGACTACCTCCAAT+GGG 0.480663 4_1:-55432033 Msa0557130:CDS
TTCTCTAATCCTCATGATCA+TGG 0.493325 4_1:-55431877 Msa0557130:CDS
AGCTATGACGTTGTAACTTA+CGG 0.493412 4_1:-55433396 Msa0557130:CDS
CTACTGGAAGGTTCTCAAAT+GGG 0.494537 4_1:-55434718 Msa0557130:CDS
GAATTGAAAGTGATCATGAT+TGG 0.495161 4_1:+55432003 None:intergenic
GACCCACTCACACCAACTCT+CGG 0.498199 4_1:-55434173 Msa0557130:CDS
ATATTTAGGCCTGAAAGAGC+TGG 0.506767 4_1:-55434276 Msa0557130:CDS
ACAAGTGAAAGATTTCATAC+AGG 0.506930 4_1:-55433358 Msa0557130:intron
AGGTTCTCAAATGGGAAACT+TGG 0.527047 4_1:-55434710 Msa0557130:CDS
GTTAACATGATTCAAGGGCA+TGG 0.528741 4_1:-55431817 Msa0557130:CDS
TGATGCCCTCGTCAACGACT+AGG 0.538252 4_1:-55431123 Msa0557130:exon
ATGATTGGCAAGCATCCCAT+TGG 0.539739 4_1:+55432018 None:intergenic
ATTTAGAATTTATGGACAGA+AGG 0.542994 4_1:-55432072 Msa0557130:intron
CCTTGAATCATGTTAACTAA+GGG 0.545855 4_1:+55431823 None:intergenic
ACACCGAGAGTTGGTGTGAG+TGG 0.549500 4_1:+55434170 None:intergenic
AAGAGGTTGGAGACTAAGCT+TGG 0.551889 4_1:-55433522 Msa0557130:CDS
GGTTGGAGACTAAGCTTGGT+AGG 0.557831 4_1:-55433518 Msa0557130:CDS
ATTGGCAAGCATCCCATTGG+AGG 0.567001 4_1:+55432021 None:intergenic
AGTGATGAAGAGCTTATGAC+AGG 0.570777 4_1:-55434227 Msa0557130:CDS
TATTGTGGTAGGGTTTGATG+AGG 0.590983 4_1:-55431306 Msa0557130:intron
GTTGTTTCCTGGGTCTACTG+TGG 0.591237 4_1:+55434808 None:intergenic
CACCGAGAGTTGGTGTGAGT+GGG 0.595494 4_1:+55434171 None:intergenic
TCCAAACACATATATGGCAG+AGG 0.597317 4_1:+55434835 None:intergenic
TTCAATACACCCTACAGAGA+AGG 0.597679 4_1:-55431183 Msa0557130:CDS
CCATTTGAGAACCTTCCAGT+AGG 0.605578 4_1:+55434719 None:intergenic
CCTTAGTTAACATGATTCAA+GGG 0.609810 4_1:-55431822 Msa0557130:CDS
ATCTTAGCACCATGATCATG+AGG 0.611629 4_1:+55431868 None:intergenic
GAGCAATGCATGTGTACCAA+AGG 0.611740 4_1:+55434928 None:intergenic
GAGGTTGATCGTGGCTGTTG+TGG 0.613754 4_1:-55431287 Msa0557130:CDS
GCAAGATCTCTACCATAAGG+TGG 0.616511 4_1:+55434752 None:intergenic
TGTAGATAAATATTCTGTTG+TGG 0.619334 4_1:-55431953 Msa0557130:CDS
TGACGAGGGCATCAAGAATG+TGG 0.620025 4_1:+55431132 None:intergenic
TAAGTTCAGATATAAAAGGA+TGG 0.623535 4_1:+55430979 None:intergenic
CTAACAAAAGTCCTACTGGA+AGG 0.627868 4_1:-55434730 Msa0557130:CDS
AGAGATAGTACACCGAGAGT+TGG 0.631587 4_1:+55434161 None:intergenic
GTCAAAACCAGAACCAGCAG+AGG 0.644468 4_1:+55434193 None:intergenic
GGGTTTGATGAGGTTGATCG+TGG 0.647867 4_1:-55431296 Msa0557130:CDS
AGGAATCCTAGTCGTTGACG+AGG 0.655855 4_1:+55431117 None:intergenic
AGATTTGGATCCAAATATGG+TGG 0.658891 4_1:+55434251 None:intergenic
GGAGACTCCACAGTAGACCC+AGG 0.678768 4_1:-55434815 Msa0557130:CDS
GGAATCCTAGTCGTTGACGA+GGG 0.702452 4_1:+55431118 None:intergenic
TGTGGCAAGACAGCACAACA+TGG 0.733730 4_1:-55431935 Msa0557130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATTTTTTTTTAAA+AGG + chr4_1:55433475-55433494 None:intergenic 0.0%
!! ATAATATATAAATATAATAT+TGG + chr4_1:55434776-55434795 None:intergenic 0.0%
!! TCTTAAAAAAATATAAATCT+TGG + chr4_1:55432570-55432589 None:intergenic 10.0%
!!! AAGATTTATATTTTTTTAAG+AGG - chr4_1:55432569-55432588 Msa0557130:intron 10.0%
!! AAAAGAAATATGATTTAATT+TGG - chr4_1:55432965-55432984 Msa0557130:intron 10.0%
!!! TTCAATTAAAATTTGAAGTT+GGG + chr4_1:55432085-55432104 None:intergenic 15.0%
!!! CTTCGTTATTAATTATTTTA+CGG - chr4_1:55432425-55432444 Msa0557130:intron 15.0%
!!! AAAAAAAAAAAAAGTACCTT+CGG + chr4_1:55433219-55433238 None:intergenic 15.0%
!! CAAATACATTAATTATTAGA+TGG - chr4_1:55433583-55433602 Msa0557130:intron 15.0%
!! TCATCAATATATATGATATT+TGG - chr4_1:55433736-55433755 Msa0557130:intron 15.0%
!! TATTGTTTACTATTGAATTA+GGG - chr4_1:55434123-55434142 Msa0557130:intron 15.0%
!!! ATAAATTTGACCATTATTTT+TGG + chr4_1:55434222-55434241 None:intergenic 15.0%
!!! TTTTATAGGTACTTAATTTC+TGG - chr4_1:55431180-55431199 Msa0557130:CDS 20.0%
!!! TGATGTTCTATACATATTTT+TGG - chr4_1:55431543-55431562 Msa0557130:intron 20.0%
!! TAACAACTAACTATTAACAT+CGG + chr4_1:55431964-55431983 None:intergenic 20.0%
!!! GTTCAATTAAAATTTGAAGT+TGG + chr4_1:55432086-55432105 None:intergenic 20.0%
!! AAACAAATATTATATACCGA+GGG - chr4_1:55432126-55432145 Msa0557130:intron 20.0%
!!! TATGTTTTGATTCCAATATT+CGG + chr4_1:55432229-55432248 None:intergenic 20.0%
!! AATTAATCAATTTCAGAATG+TGG - chr4_1:55432275-55432294 Msa0557130:intron 20.0%
!! ATTTCAAACAATACAAAAAG+AGG - chr4_1:55432322-55432341 Msa0557130:intron 20.0%
!! TTTCATACAGGTAATTAATT+TGG - chr4_1:55432515-55432534 Msa0557130:intron 20.0%
!!! TCTCTTTTTAAATTGTTTCT+TGG + chr4_1:55432658-55432677 None:intergenic 20.0%
!! AAAAGAGAGAGAAAAAAAAA+AGG - chr4_1:55432670-55432689 Msa0557130:intron 20.0%
!!! ATTTTCACTATAAAGTTTAG+AGG + chr4_1:55432756-55432775 None:intergenic 20.0%
!!! CAATAATTTTTATGTACATG+AGG + chr4_1:55433259-55433278 None:intergenic 20.0%
!! GTACATAAAAATTATTGTGA+AGG - chr4_1:55433262-55433281 Msa0557130:intron 20.0%
!! TTAATAAGAAATACTCTTTC+CGG - chr4_1:55433489-55433508 Msa0557130:CDS 20.0%
!!! TAAGTACTTATATTTAAGAC+CGG - chr4_1:55433620-55433639 Msa0557130:intron 20.0%
!!! TACATGTCATTTAGAATTTA+TGG - chr4_1:55433781-55433800 Msa0557130:intron 20.0%
!! CTATTGTTTACTATTGAATT+AGG - chr4_1:55434122-55434141 Msa0557130:intron 20.0%
!! AAATATAATATTGGATAGCT+AGG + chr4_1:55434767-55434786 None:intergenic 20.0%
!! ACAAAAGACAAAAATAAAAG+TGG - chr4_1:55434850-55434869 Msa0557130:CDS 20.0%
!! TCTATAAGTTCAGATATAAA+AGG + chr4_1:55434889-55434908 None:intergenic 20.0%
!!! ACTTTTATTTTTGCTAATGA+TGG + chr4_1:55434916-55434935 None:intergenic 20.0%
!! ATTAATTAAGCACATACTTT+GGG + chr4_1:55434960-55434979 None:intergenic 20.0%
!! AATTAATTAAGCACATACTT+TGG + chr4_1:55434961-55434980 None:intergenic 20.0%
!! AAAGTATGTGCTTAATTAAT+TGG - chr4_1:55434960-55434979 Msa0557130:five_prime_UTR 20.0%
!! AAGTATGTGCTTAATTAATT+GGG - chr4_1:55434961-55434980 Msa0557130:five_prime_UTR 20.0%
!! TGTTTTATGGTTAGAATTGA+AGG - chr4_1:55430989-55431008 Msa0557130:three_prime_UTR 25.0%
! TATAGAACATCAATCAAACA+AGG + chr4_1:55431535-55431554 None:intergenic 25.0%
! TCATGATTTAAGCATATGTT+TGG - chr4_1:55431761-55431780 Msa0557130:intron 25.0%
! GAAACAAATATTATATACCG+AGG - chr4_1:55432125-55432144 Msa0557130:intron 25.0%
!!! ATGTTTTGATTCCAATATTC+GGG + chr4_1:55432228-55432247 None:intergenic 25.0%
! ATTCCATTTGCTTTGATATT+GGG + chr4_1:55432302-55432321 None:intergenic 25.0%
! TATTCCATTTGCTTTGATAT+TGG + chr4_1:55432303-55432322 None:intergenic 25.0%
!!! TTAAACTTCAAGTGTTTTGA+TGG + chr4_1:55432804-55432823 None:intergenic 25.0%
! TAACATGCTATGTATGAATT+TGG - chr4_1:55432821-55432840 Msa0557130:intron 25.0%
!! CAATTATATGTATTCGAGTT+AGG - chr4_1:55432929-55432948 Msa0557130:intron 25.0%
! GAGATAAATACAAAAGTAGA+TGG + chr4_1:55433032-55433051 None:intergenic 25.0%
! ATATTTATGCACTGTACTAA+AGG + chr4_1:55433122-55433141 None:intergenic 25.0%
!! TATATATGTTTTCCTTGGTA+TGG + chr4_1:55433196-55433215 None:intergenic 25.0%
!! TTGCTCTTTCAAATTTTGTT+GGG + chr4_1:55433346-55433365 None:intergenic 25.0%
!! TTTGCTCTTTCAAATTTTGT+TGG + chr4_1:55433347-55433366 None:intergenic 25.0%
!! CATCTAAAACACTAGAAAAA+GGG - chr4_1:55433372-55433391 Msa0557130:CDS 25.0%
! AAGTTGTTTATAATTGAGAC+CGG + chr4_1:55433511-55433530 None:intergenic 25.0%
!!! CTACTTGTTTTACAATATGT+TGG + chr4_1:55433661-55433680 None:intergenic 25.0%
!! ATTTAGAATTTATGGACAGA+AGG - chr4_1:55433789-55433808 Msa0557130:intron 25.0%
! TGTAGATAAATATTCTGTTG+TGG - chr4_1:55433908-55433927 Msa0557130:intron 25.0%
! TTAAGTTCATCTCTAAATGT+TGG - chr4_1:55434191-55434210 Msa0557130:CDS 25.0%
! GTTAGTGAAAATAACTTCAT+AGG - chr4_1:55434451-55434470 Msa0557130:intron 25.0%
! TGTTTGTATGTATGTTATTG+TGG - chr4_1:55434540-55434559 Msa0557130:intron 25.0%
! ACAAAAATAAAAGTGGAGAA+TGG - chr4_1:55434857-55434876 Msa0557130:CDS 25.0%
! TAAGTTCAGATATAAAAGGA+TGG + chr4_1:55434885-55434904 None:intergenic 25.0%
! TTGGGATGTTTCAATATTAA+AGG - chr4_1:55434979-55434998 Msa0557130:five_prime_UTR 25.0%
! TGGGATGTTTCAATATTAAA+GGG - chr4_1:55434980-55434999 Msa0557130:five_prime_UTR 25.0%
TCATTGCTCATTCTATATCA+TGG - chr4_1:55430907-55430926 Msa0557130:three_prime_UTR 30.0%
TTCTATATCATGGAAACCTT+TGG - chr4_1:55430917-55430936 Msa0557130:three_prime_UTR 30.0%
!!! GCTTAGTTTGTTGTGTTTTA+TGG - chr4_1:55430976-55430995 Msa0557130:three_prime_UTR 30.0%
!! TTATGTAGTTGTTGTTTCCT+GGG + chr4_1:55431066-55431085 None:intergenic 30.0%
!! TTTATGTAGTTGTTGTTTCC+TGG + chr4_1:55431067-55431086 None:intergenic 30.0%
!!! AAACTTGGCACTGATTTTAT+AGG - chr4_1:55431166-55431185 Msa0557130:CDS 30.0%
CATAACAGTTTAACATGCAA+AGG + chr4_1:55431218-55431237 None:intergenic 30.0%
AACAGAGTTCAAAATCCATA+TGG - chr4_1:55431308-55431327 Msa0557130:intron 30.0%
!! TCTTTTGACTCAATTCCATA+TGG + chr4_1:55431326-55431345 None:intergenic 30.0%
CGAAAATGGTAATTAATGCT+AGG + chr4_1:55431395-55431414 None:intergenic 30.0%
AGTTCATATCTCATCGAAAA+TGG + chr4_1:55431409-55431428 None:intergenic 30.0%
ACTTGTACAGCTTCATATTT+AGG - chr4_1:55431571-55431590 Msa0557130:intron 30.0%
CTAAGATTTGGATCCAAATA+TGG + chr4_1:55431616-55431635 None:intergenic 30.0%
TAAGCATATGTTTGGTATCA+CGG - chr4_1:55431769-55431788 Msa0557130:intron 30.0%
! AGTGTACCTTTGAAAAATCA+CGG + chr4_1:55431822-55431841 None:intergenic 30.0%
!! TTTTCAAAGGTACACTTTGT+AGG - chr4_1:55431826-55431845 Msa0557130:CDS 30.0%
CTTAATATTGGAAGCAAATG+TGG + chr4_1:55432005-55432024 None:intergenic 30.0%
CACATTTGCTTCCAATATTA+AGG - chr4_1:55432003-55432022 Msa0557130:CDS 30.0%
TTTGCTTCCAATATTAAGGA+TGG - chr4_1:55432007-55432026 Msa0557130:CDS 30.0%
!!! GTTTCATAAGCTAGTTTTGT+TGG + chr4_1:55432110-55432129 None:intergenic 30.0%
! ATTTTTGTATCCCCGAATAT+TGG - chr4_1:55432214-55432233 Msa0557130:intron 30.0%
!!! TGTTTTGATTCCAATATTCG+GGG + chr4_1:55432227-55432246 None:intergenic 30.0%
CAAACAATACAAAAAGAGGT+TGG - chr4_1:55432326-55432345 Msa0557130:intron 30.0%
!! GCATTATTTTTCATAAGTGC+TGG - chr4_1:55432393-55432412 Msa0557130:intron 30.0%
!! TCATAGCTTTTTCTTCGTAT+TGG + chr4_1:55432453-55432472 None:intergenic 30.0%
ACAAGTGAAAGATTTCATAC+AGG - chr4_1:55432503-55432522 Msa0557130:intron 30.0%
ACAATTAAATTACAGCACTG+AGG - chr4_1:55432713-55432732 Msa0557130:intron 30.0%
! TTCTCATGATAAGCTCTTTT+TGG - chr4_1:55433141-55433160 Msa0557130:intron 30.0%
!! TAATGACTTTTTCCATACCA+AGG - chr4_1:55433181-55433200 Msa0557130:intron 30.0%
! TTCGGTATATATGTTTTCCT+TGG + chr4_1:55433201-55433220 None:intergenic 30.0%
AAGGAAAACATATATACCGA+AGG - chr4_1:55433200-55433219 Msa0557130:intron 30.0%
! TCTTTCAAATTTTGTTGGGT+TGG + chr4_1:55433342-55433361 None:intergenic 30.0%
! GCATCTAAAACACTAGAAAA+AGG - chr4_1:55433371-55433390 Msa0557130:CDS 30.0%
!! GCTAGAAAAATTGCTTTTGT+TGG - chr4_1:55433813-55433832 Msa0557130:intron 30.0%
GAATTGAAAGTGATCATGAT+TGG + chr4_1:55433861-55433880 None:intergenic 30.0%
CCTTGAATCATGTTAACTAA+GGG + chr4_1:55434041-55434060 None:intergenic 30.0%
CCTTAGTTAACATGATTCAA+GGG - chr4_1:55434039-55434058 Msa0557130:intron 30.0%
TTATGATCTTAACCAAGCAA+GGG + chr4_1:55434097-55434116 None:intergenic 30.0%
ATTATGATCTTAACCAAGCA+AGG + chr4_1:55434098-55434117 None:intergenic 30.0%
TACTATTGAATTAGGGAACT+AGG - chr4_1:55434130-55434149 Msa0557130:intron 30.0%
ACTATTGAATTAGGGAACTA+GGG - chr4_1:55434131-55434150 Msa0557130:intron 30.0%
AAAAGTTGTCAAACATGTTG+TGG - chr4_1:55434406-55434425 Msa0557130:intron 30.0%
TGTATGTATGTTATTGTGGT+AGG - chr4_1:55434544-55434563 Msa0557130:intron 30.0%
GTATGTATGTTATTGTGGTA+GGG - chr4_1:55434545-55434564 Msa0557130:intron 30.0%
! ATCCGTCAAAATATGTCTTT+TGG - chr4_1:55434653-55434672 Msa0557130:intron 30.0%
! TCCGTCAAAATATGTCTTTT+GGG - chr4_1:55434654-55434673 Msa0557130:intron 30.0%
!! TCCCAAAAGACATATTTTGA+CGG + chr4_1:55434658-55434677 None:intergenic 30.0%
! AAGAGTGATTTTCCACCTTA+TGG - chr4_1:55431097-55431116 Msa0557130:three_prime_UTR 35.0%
TTAGCAAGATCTCTACCATA+AGG + chr4_1:55431115-55431134 None:intergenic 35.0%
TGAGATATGAACTTCGTACT+AGG - chr4_1:55431416-55431435 Msa0557130:intron 35.0%
AGATTTGGATCCAAATATGG+TGG + chr4_1:55431613-55431632 None:intergenic 35.0%
AGCTCTTCATCACTAAGATT+TGG + chr4_1:55431628-55431647 None:intergenic 35.0%
!! AACACACCGTGATTTTTCAA+AGG - chr4_1:55431813-55431832 Msa0557130:CDS 35.0%
TTTAGAAAAAGAAGCTCGAG+TGG + chr4_1:55431938-55431957 None:intergenic 35.0%
TGCATTGCCATCCTTAATAT+TGG + chr4_1:55432017-55432036 None:intergenic 35.0%
! ACATGAAAGCATAATACCCT+CGG + chr4_1:55432145-55432164 None:intergenic 35.0%
AGCTATGACGTTGTAACTTA+CGG - chr4_1:55432465-55432484 Msa0557130:intron 35.0%
! TCACTTGTTGAAGCAAGAAA+TGG + chr4_1:55432491-55432510 None:intergenic 35.0%
TGTCTTCCTAAACACTTCTT+GGG + chr4_1:55432626-55432645 None:intergenic 35.0%
ATGTCTTCCTAAACACTTCT+TGG + chr4_1:55432627-55432646 None:intergenic 35.0%
TGATGTTACACCAACATCAT+TGG + chr4_1:55432911-55432930 None:intergenic 35.0%
GTAGATCGATCTATCATCAT+TGG + chr4_1:55433010-55433029 None:intergenic 35.0%
CACTGTACTAAAGGTTCAAA+GGG + chr4_1:55433113-55433132 None:intergenic 35.0%
ATGTACATGAGGATAAAGCT+AGG + chr4_1:55433248-55433267 None:intergenic 35.0%
TTGGTACAAATTACGTTCTC+CGG + chr4_1:55433642-55433661 None:intergenic 35.0%
GCTGATGCTTCATTAACATT+TGG - chr4_1:55433680-55433699 Msa0557130:intron 35.0%
TTGGTTCAATATTCGATCTC+CGG - chr4_1:55433699-55433718 Msa0557130:intron 35.0%
TTCTCTAATCCTCATGATCA+TGG - chr4_1:55433984-55434003 Msa0557130:intron 35.0%
CCCTTAGTTAACATGATTCA+AGG - chr4_1:55434038-55434057 Msa0557130:intron 35.0%
CCCTTGAATCATGTTAACTA+AGG + chr4_1:55434042-55434061 None:intergenic 35.0%
!! ATTCAAGGGCATGGAAATTT+TGG - chr4_1:55434053-55434072 Msa0557130:intron 35.0%
AGTTCATCTCTAAATGTTGG+AGG - chr4_1:55434194-55434213 Msa0557130:CDS 35.0%
!! GTTGGAGGTACCAAAAATAA+TGG - chr4_1:55434209-55434228 Msa0557130:CDS 35.0%
TATGATATGCCTTCTCTGTA+GGG + chr4_1:55434690-55434709 None:intergenic 35.0%
TTATGATATGCCTTCTCTGT+AGG + chr4_1:55434691-55434710 None:intergenic 35.0%
TCCAAACACATATATGGCAG+AGG + chr4_1:55431029-55431048 None:intergenic 40.0%
GGAGTCTCCAAACACATATA+TGG + chr4_1:55431035-55431054 None:intergenic 40.0%
CTTGCTAACAAAAGTCCTAC+TGG - chr4_1:55431127-55431146 Msa0557130:CDS 40.0%
CTAACAAAAGTCCTACTGGA+AGG - chr4_1:55431131-55431150 Msa0557130:CDS 40.0%
CTACTGGAAGGTTCTCAAAT+GGG - chr4_1:55431143-55431162 Msa0557130:CDS 40.0%
AGGTTCTCAAATGGGAAACT+TGG - chr4_1:55431151-55431170 Msa0557130:CDS 40.0%
TGAACTTCGTACTAGGTTAC+AGG - chr4_1:55431423-55431442 Msa0557130:intron 40.0%
GAACTTCGTACTAGGTTACA+GGG - chr4_1:55431424-55431443 Msa0557130:intron 40.0%
ATATTTAGGCCTGAAAGAGC+TGG - chr4_1:55431585-55431604 Msa0557130:intron 40.0%
AGTGATGAAGAGCTTATGAC+AGG - chr4_1:55431634-55431653 Msa0557130:intron 40.0%
AAATCATGAACACACACTGC+AGG + chr4_1:55431750-55431769 None:intergenic 40.0%
CGGTGGACATATAAGAATCA+CGG - chr4_1:55431789-55431808 Msa0557130:intron 40.0%
TTTGAGAACAGTGACATGCA+TGG + chr4_1:55432054-55432073 None:intergenic 40.0%
GGTCCCAATATCAAAGCAAA+TGG - chr4_1:55432296-55432315 Msa0557130:intron 40.0%
!! TTACCACAAAAAGTGTCACC+CGG - chr4_1:55432600-55432619 Msa0557130:intron 40.0%
! CATCATTGGTGCGACTTTTT+AGG + chr4_1:55432897-55432916 None:intergenic 40.0%
AAAAGTCGCACCAATGATGT+TGG - chr4_1:55432898-55432917 Msa0557130:intron 40.0%
GGCACTAGAATAGACTAAGT+TGG + chr4_1:55433092-55433111 None:intergenic 40.0%
GCACTGTACTAAAGGTTCAA+AGG + chr4_1:55433114-55433133 None:intergenic 40.0%
CATGAGGATAAAGCTAGGAA+AGG + chr4_1:55433243-55433262 None:intergenic 40.0%
! TTTTGTTGGACTACCTCCAA+TGG - chr4_1:55433827-55433846 Msa0557130:intron 40.0%
TTTGTTGGACTACCTCCAAT+GGG - chr4_1:55433828-55433847 Msa0557130:intron 40.0%
ATCTTAGCACCATGATCATG+AGG + chr4_1:55433996-55434015 None:intergenic 40.0%
GTTAACATGATTCAAGGGCA+TGG - chr4_1:55434044-55434063 Msa0557130:intron 40.0%
TATTGTGGTAGGGTTTGATG+AGG - chr4_1:55434555-55434574 Msa0557130:intron 40.0%
TTCAATACACCCTACAGAGA+AGG - chr4_1:55434678-55434697 Msa0557130:intron 40.0%
GAGCAATGCATGTGTACCAA+AGG + chr4_1:55430936-55430955 None:intergenic 45.0%
GCCTCTGCCATATATGTGTT+TGG - chr4_1:55431025-55431044 Msa0557130:three_prime_UTR 45.0%
GCAAGATCTCTACCATAAGG+TGG + chr4_1:55431112-55431131 None:intergenic 45.0%
CCATTTGAGAACCTTCCAGT+AGG + chr4_1:55431145-55431164 None:intergenic 45.0%
CCTACTGGAAGGTTCTCAAA+TGG - chr4_1:55431142-55431161 Msa0557130:CDS 45.0%
TTTGTCCATGACACCGTATG+AGG - chr4_1:55431246-55431265 Msa0557130:CDS 45.0%
AGAGATAGTACACCGAGAGT+TGG + chr4_1:55431703-55431722 None:intergenic 45.0%
GCATATGTTTGGTATCACGG+TGG - chr4_1:55431772-55431791 Msa0557130:intron 45.0%
AAAAGAAGCTCGAGTGGTTG+TGG + chr4_1:55431932-55431951 None:intergenic 45.0%
AAGAGGTTGGAGACTAAGCT+TGG - chr4_1:55432339-55432358 Msa0557130:intron 45.0%
TTCCTAAACACTTCTTGGGC+CGG + chr4_1:55432622-55432641 None:intergenic 45.0%
ATTGTGAAGGTAGCTGTGAG+TGG - chr4_1:55433275-55433294 Msa0557130:intron 45.0%
GTGGTAGCTCACACAACTAA+TGG - chr4_1:55433302-55433321 Msa0557130:intron 45.0%
! GATGACATGTACGCATTGAC+CGG + chr4_1:55433721-55433740 None:intergenic 45.0%
ATGATTGGCAAGCATCCCAT+TGG + chr4_1:55433846-55433865 None:intergenic 45.0%
! ACGTTCAAGAAGCGCATTGT+TGG + chr4_1:55433883-55433902 None:intergenic 45.0%
! GTTGTTTCCTGGGTCTACTG+TGG + chr4_1:55431056-55431075 None:intergenic 50.0%
ACGACTGAGCTCACCTCATA+CGG + chr4_1:55431262-55431281 None:intergenic 50.0%
GGGTCAAACACTTACTGCTG+AGG - chr4_1:55431444-55431463 Msa0557130:intron 50.0%
!! AGAGCTGGTGCCACCATATT+TGG - chr4_1:55431600-55431619 Msa0557130:intron 50.0%
!!! GGAGTTAGTTTTGCCTCTGC+TGG - chr4_1:55431655-55431674 Msa0557130:intron 50.0%
!!! AGTTTTGCCTCTGCTGGTTC+TGG - chr4_1:55431661-55431680 Msa0557130:intron 50.0%
GTCAAAACCAGAACCAGCAG+AGG + chr4_1:55431671-55431690 None:intergenic 50.0%
GGTTGGAGACTAAGCTTGGT+AGG - chr4_1:55432343-55432362 Msa0557130:intron 50.0%
TCCTAAACACTTCTTGGGCC+GGG + chr4_1:55432621-55432640 None:intergenic 50.0%
ATTGGCAAGCATCCCATTGG+AGG + chr4_1:55433843-55433862 None:intergenic 50.0%
TGTGGCAAGACAGCACAACA+TGG - chr4_1:55433926-55433945 Msa0557130:intron 50.0%
ATGCAGTCGTATCCCTTGCT+TGG - chr4_1:55434082-55434101 Msa0557130:intron 50.0%
! GGGTTTGATGAGGTTGATCG+TGG - chr4_1:55434565-55434584 Msa0557130:intron 50.0%
TGTGGCGATTTGCGACGAAT+AGG + chr4_1:55434714-55434733 None:intergenic 50.0%
!! TGACGAGGGCATCAAGAATG+TGG + chr4_1:55434732-55434751 None:intergenic 50.0%
GGAATCCTAGTCGTTGACGA+GGG + chr4_1:55434746-55434765 None:intergenic 50.0%
AGGAATCCTAGTCGTTGACG+AGG + chr4_1:55434747-55434766 None:intergenic 50.0%
! GCTCACCTCATACGGTGTCA+TGG + chr4_1:55431254-55431273 None:intergenic 55.0%
ACTGCTGAGGTGACACGTCA+CGG - chr4_1:55431457-55431476 Msa0557130:intron 55.0%
ATGGTGGCACCAGCTCTTTC+AGG + chr4_1:55431597-55431616 None:intergenic 55.0%
GACCCACTCACACCAACTCT+CGG - chr4_1:55431688-55431707 Msa0557130:intron 55.0%
!! CACCGAGAGTTGGTGTGAGT+GGG + chr4_1:55431693-55431712 None:intergenic 55.0%
!! ACACCGAGAGTTGGTGTGAG+TGG + chr4_1:55431694-55431713 None:intergenic 55.0%
!! ACCCGGCCCAAGAAGTGTTT+AGG - chr4_1:55432617-55432636 Msa0557130:intron 55.0%
GGTAGCTGTGAGTGGTTGTG+TGG - chr4_1:55433283-55433302 Msa0557130:intron 55.0%
! GAGGTTGATCGTGGCTGTTG+TGG - chr4_1:55434574-55434593 Msa0557130:intron 55.0%
GATCGTGGCTGTTGTGGAAG+TGG - chr4_1:55434580-55434599 Msa0557130:intron 55.0%
TGATGCCCTCGTCAACGACT+AGG - chr4_1:55434738-55434757 Msa0557130:CDS 55.0%
GGAGACTCCACAGTAGACCC+AGG - chr4_1:55431046-55431065 Msa0557130:three_prime_UTR 60.0%
!! GGGCCGGGTGACACTTTTTG+TGG + chr4_1:55432606-55432625 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55430873 55435010 55430873 ID=Msa0557130;Name=Msa0557130
chr4_1 mRNA 55430873 55435010 55430873 ID=Msa0557130-mRNA-1;Parent=Msa0557130;Name=Msa0557130-mRNA-1;_AED=0.13;_eAED=0.13;_QI=53|1|1|1|1|1|5|251|366
chr4_1 exon 55430873 55431317 55430873 ID=Msa0557130-mRNA-1:exon:16587;Parent=Msa0557130-mRNA-1
chr4_1 exon 55431809 55432088 55431809 ID=Msa0557130-mRNA-1:exon:16586;Parent=Msa0557130-mRNA-1
chr4_1 exon 55433359 55433592 55433359 ID=Msa0557130-mRNA-1:exon:16585;Parent=Msa0557130-mRNA-1
chr4_1 exon 55434172 55434302 55434172 ID=Msa0557130-mRNA-1:exon:16584;Parent=Msa0557130-mRNA-1
chr4_1 exon 55434696 55435010 55434696 ID=Msa0557130-mRNA-1:exon:16583;Parent=Msa0557130-mRNA-1
chr4_1 five_prime_UTR 55434958 55435010 55434958 ID=Msa0557130-mRNA-1:five_prime_utr;Parent=Msa0557130-mRNA-1
chr4_1 CDS 55434696 55434957 55434696 ID=Msa0557130-mRNA-1:cds;Parent=Msa0557130-mRNA-1
chr4_1 CDS 55434172 55434302 55434172 ID=Msa0557130-mRNA-1:cds;Parent=Msa0557130-mRNA-1
chr4_1 CDS 55433359 55433592 55433359 ID=Msa0557130-mRNA-1:cds;Parent=Msa0557130-mRNA-1
chr4_1 CDS 55431809 55432088 55431809 ID=Msa0557130-mRNA-1:cds;Parent=Msa0557130-mRNA-1
chr4_1 CDS 55431124 55431317 55431124 ID=Msa0557130-mRNA-1:cds;Parent=Msa0557130-mRNA-1
chr4_1 three_prime_UTR 55430873 55431123 55430873 ID=Msa0557130-mRNA-1:three_prime_utr;Parent=Msa0557130-mRNA-1
Gene Sequence

>Msa0557130

ATGGAAACCTTTGGTACACATGCATTGCTCTCTATTGTGCACATTTTCATGCTTAGTTTGTTGTGTTTTATGGTTAGAATTGAAGGTTCAAAGAGTAAAGCCTCTGCCATATATGTGTTTGGAGACTCCACAGTAGACCCAGGAAACAACAACTACATAAACACAGCTTTCAAGAGTGATTTTCCACCTTATGGTAGAGATCTTGCTAACAAAAGTCCTACTGGAAGGTTCTCAAATGGGAAACTTGGCACTGATTTTATAGCTTCATATTTAGGCCTGAAAGAGCTGGTGCCACCATATTTGGATCCAAATCTTAGTGATGAAGAGCTTATGACAGGAGTTAGTTTTGCCTCTGCTGGTTCTGGTTTTGACCCACTCACACCAACTCTCGGTAATGTGGTCCCAATATCAAAGCAAATGGAATATTTCAAACAATACAAAAAGAGGTTGGAGACTAAGCTTGGTAGGCAAAGAACTGAAAATCATATGAACAACGCATTATTTTTCATAAGTGCTGGTACAAATGACTTCGTTATTAATTATTTTACGGTACCAATACGAAGAAAAAGCTATGACGTTGTAACTTACGGCCATTTCTTGCTTCAACAAGTGAAAGATTTCATACAGAATTTATGGACAGAAGGTGCTAGAAAAATTGCTTTTGTTGGACTACCTCCAATGGGATGCTTGCCAATCATGATCACTTTCAATTCCAACAATGCGCTTCTTGAACGTAGTTGTGTAGATAAATATTCTGTTGTGGCAAGACAGCACAACATGGTGCTTCAACATGAATTGTTCTTAATGCAACTCAATTTCTCTAATCCTCATGATCATGGTGCTAAGATCTCTTACATTGACATATATGAACCCTTAGTTAACATGATTCAAGGGCATGGAAATTTTGGGTTTGATGAGGTTGATCGTGGCTGTTGTGGAAGTGGTTTCATTGAAGCAACATTTATGTGTAATCGTGTTTCACATGTATGTTCTGATCCGTCAAAATATGTCTTTTGGGATTCAATACACCCTACAGAGAAGGCATATCATAACCTATTCGTCGCAAATCGCCACATTCTTGATGCCCTCGTCAACGACTAG
Protein sequence

>Msa0557130

METFGTHALLSIVHIFMLSLLCFMVRIEGSKSKASAIYVFGDSTVDPGNNNYINTAFKSDFPPYGRDLANKSPTGRFSNGKLGTDFIASYLGLKELVPPYLDPNLSDEELMTGVSFASAGSGFDPLTPTLGNVVPISKQMEYFKQYKKRLETKLGRQRTENHMNNALFFISAGTNDFVINYFTVPIRRKSYDVVTYGHFLLQQVKDFIQNLWTEGARKIAFVGLPPMGCLPIMITFNSNNALLERSCVDKYSVVARQHNMVLQHELFLMQLNFSNPHDHGAKISYIDIYEPLVNMIQGHGNFGFDEVDRGCCGSGFIEATFMCNRVSHVCSDPSKYVFWDSIHPTEKAYHNLFVANRHILDALVND*