AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652490 MtrunA17_Chr4g0046151 96.986 365 11 0 1 365 1 365 0.0 742
Msa0652490 MtrunA17_Chr2g0283191 60.894 358 131 5 15 366 16 370 4.94e-167 471
Msa0652490 MtrunA17_Chr5g0432101 46.269 335 169 4 31 363 28 353 6.24e-105 313
Msa0652490 MtrunA17_Chr1g0156931 43.218 317 171 3 36 352 41 348 2.11e-95 288
Msa0652490 MtrunA17_Chr1g0156921 39.943 348 195 5 12 354 15 353 3.56e-94 285
Msa0652490 MtrunA17_Chr5g0405831 42.500 360 193 8 9 366 17 364 2.36e-92 281
Msa0652490 MtrunA17_Chr5g0405821 43.653 323 170 6 36 355 43 356 3.08e-92 280
Msa0652490 MtrunA17_Chr3g0120861 42.229 341 172 5 32 364 34 357 1.87e-90 276
Msa0652490 MtrunA17_Chr8g0341001 41.994 331 180 5 36 364 32 352 2.52e-90 275
Msa0652490 MtrunA17_Chr8g0371491 40.060 332 187 4 36 366 36 356 1.24e-88 271
Msa0652490 MtrunA17_Chr5g0438641 42.197 346 175 6 9 346 7 335 9.13e-88 268
Msa0652490 MtrunA17_Chr3g0105401 40.113 354 198 8 10 359 4 347 1.15e-87 268
Msa0652490 MtrunA17_Chr1g0156901 39.143 350 197 3 11 352 17 358 1.91e-87 268
Msa0652490 MtrunA17_Chr1g0156891 38.904 365 206 6 7 366 11 363 3.70e-87 267
Msa0652490 MtrunA17_Chr3g0142941 41.956 317 176 2 36 352 47 355 4.86e-87 267
Msa0652490 MtrunA17_Chr5g0438621 39.205 352 203 5 9 359 3 344 7.49e-87 266
Msa0652490 MtrunA17_Chr5g0437421 42.462 325 171 5 32 349 28 343 2.02e-86 265
Msa0652490 MtrunA17_Chr5g0438631 39.286 336 195 5 13 346 4 332 4.06e-86 264
Msa0652490 MtrunA17_Chr1g0156911 40.694 317 180 2 36 352 37 345 1.48e-85 263
Msa0652490 MtrunA17_Chr8g0371481 40.841 333 184 5 36 366 41 362 3.67e-85 262
Msa0652490 MtrunA17_Chr2g0330781 38.973 331 185 5 36 364 31 346 1.47e-84 260
Msa0652490 MtrunA17_Chr3g0142921 38.871 319 186 3 36 353 36 346 3.13e-84 259
Msa0652490 MtrunA17_Chr8g0371471 40.881 318 179 4 36 352 41 350 9.43e-84 258
Msa0652490 MtrunA17_Chr2g0320671 38.393 336 195 6 16 348 9 335 8.56e-76 238
Msa0652490 MtrunA17_Chr4g0027521 36.494 348 206 6 20 363 12 348 9.12e-68 217
Msa0652490 MtrunA17_Chr1g0157001 37.942 311 182 4 41 350 41 341 1.05e-67 218
Msa0652490 MtrunA17_Chr1g0182811 34.582 347 206 8 10 350 11 342 9.52e-63 204
Msa0652490 MtrunA17_Chr7g0275021 35.714 322 194 6 30 348 28 339 2.68e-61 201
Msa0652490 MtrunA17_Chr7g0275011 34.104 346 203 10 10 348 12 339 1.41e-60 199
Msa0652490 MtrunA17_Chr3g0099161 34.018 341 197 8 33 365 89 409 4.54e-58 194
Msa0652490 MtrunA17_Chr6g0457921 35.987 314 187 7 39 348 32 335 1.57e-56 188
Msa0652490 MtrunA17_Chr1g0189901 34.177 316 195 6 36 348 31 336 2.15e-56 188
Msa0652490 MtrunA17_Chr2g0301641 34.294 347 206 9 10 346 14 348 2.94e-56 189
Msa0652490 MtrunA17_Chr3g0099151 34.375 352 205 10 10 348 57 395 4.09e-56 189
Msa0652490 MtrunA17_Chr7g0274991 33.333 348 211 10 20 360 15 348 4.15e-56 187
Msa0652490 MtrunA17_Chr4g0008851 31.445 353 222 7 12 361 10 345 3.38e-55 185
Msa0652490 MtrunA17_Chr5g0444401 35.514 321 186 7 36 348 28 335 1.20e-54 183
Msa0652490 MtrunA17_Chr8g0344941 36.000 325 186 9 36 352 41 351 1.56e-54 183
Msa0652490 MtrunA17_Chr7g0215961 33.520 358 203 11 13 365 8 335 1.73e-53 180
Msa0652490 MtrunA17_Chr1g0189891 33.022 321 187 10 36 348 29 329 9.88e-53 178
Msa0652490 MtrunA17_Chr3g0099231 32.059 340 204 8 33 365 25 344 1.46e-51 176
Msa0652490 MtrunA17_Chr1g0189931 32.317 328 185 7 36 348 32 337 1.53e-51 175
Msa0652490 MtrunA17_Chr7g0275001 32.845 341 212 9 22 357 10 338 2.04e-51 175
Msa0652490 MtrunA17_Chr5g0396511 32.381 315 194 8 38 346 48 349 3.68e-51 175
Msa0652490 MtrunA17_Chr8g0374101 31.608 367 225 12 10 362 6 360 6.82e-51 174
Msa0652490 MtrunA17_Chr4g0017431 32.558 344 209 10 15 350 10 338 8.30e-50 171
Msa0652490 MtrunA17_Chr2g0294311 31.319 364 223 11 10 359 5 355 8.62e-50 171
Msa0652490 MtrunA17_Chr8g0349341 33.526 346 196 11 16 346 10 336 2.18e-48 167
Msa0652490 MtrunA17_Chr8g0380041 31.054 351 219 11 15 357 7 342 2.62e-48 167
Msa0652490 MtrunA17_Chr2g0294301 31.871 342 208 10 33 366 32 356 4.53e-48 166
Msa0652490 MtrunA17_Chr3g0086641 32.164 342 209 11 16 346 11 340 1.13e-47 165
Msa0652490 MtrunA17_Chr4g0060811 32.416 327 202 10 38 359 29 341 3.53e-47 164
Msa0652490 MtrunA17_Chr2g0285061 30.499 341 222 8 10 346 6 335 4.97e-47 163
Msa0652490 MtrunA17_Chr3g0092131 31.250 352 217 12 16 359 3 337 7.32e-47 163
Msa0652490 MtrunA17_Chr4g0068441 31.429 350 219 9 13 357 15 348 8.02e-47 163
Msa0652490 MtrunA17_Chr8g0349321 32.923 325 183 11 36 348 37 338 2.67e-46 161
Msa0652490 MtrunA17_Chr3g0077571 29.912 341 221 9 8 346 4 328 1.49e-45 159
Msa0652490 MtrunA17_Chr3g0077581 28.775 351 222 10 16 348 4 344 2.72e-43 154
Msa0652490 MtrunA17_Chr8g0344931 31.385 325 190 10 33 348 34 334 3.97e-43 153
Msa0652490 MtrunA17_Chr2g0284921 29.052 327 204 9 27 346 25 330 1.13e-42 152
Msa0652490 MtrunA17_Chr3g0131321 30.548 347 223 7 8 346 4 340 2.71e-42 151
Msa0652490 MtrunA17_Chr2g0284951 31.579 342 205 12 9 346 9 325 8.26e-42 150
Msa0652490 MtrunA17_Chr5g0434621 30.721 319 196 11 38 348 27 328 1.16e-41 149
Msa0652490 MtrunA17_Chr7g0229591 36.041 197 121 1 18 209 7 203 3.34e-40 141
Msa0652490 MtrunA17_Chr8g0349301 33.677 291 170 10 36 323 37 307 8.55e-40 143
Msa0652490 MtrunA17_Chr8g0370951 30.548 347 214 13 15 348 9 341 1.56e-39 144
Msa0652490 MtrunA17_Chr4g0027571 33.621 232 128 6 139 364 3 214 2.37e-39 139
Msa0652490 MtrunA17_Chr5g0420811 29.248 359 227 11 10 364 6 341 1.72e-38 140
Msa0652490 MtrunA17_Chr2g0284991 28.909 339 217 10 23 357 20 338 8.76e-38 139
Msa0652490 MtrunA17_Chr2g0285001 29.598 348 215 13 15 355 13 337 3.07e-37 138
Msa0652490 MtrunA17_Chr3g0085881 29.874 318 193 11 36 348 33 325 8.39e-37 136
Msa0652490 MtrunA17_Chr8g0349331 31.464 321 165 9 35 348 34 306 1.03e-36 135
Msa0652490 MtrunA17_Chr8g0370981 27.296 392 214 10 11 348 18 392 1.36e-35 134
Msa0652490 MtrunA17_Chr8g0380031 28.125 320 204 10 31 346 79 376 7.86e-35 132
Msa0652490 MtrunA17_Chr3g0085231 29.464 336 210 10 15 346 10 322 1.39e-34 130
Msa0652490 MtrunA17_Chr2g0284941 26.611 357 213 11 11 358 3 319 7.27e-34 128
Msa0652490 MtrunA17_Chr1g0160031 29.695 394 203 18 14 366 12 372 2.06e-31 122
Msa0652490 MtrunA17_Chr7g0271551 29.474 380 219 16 3 362 2 352 2.07e-31 122
Msa0652490 MtrunA17_Chr2g0283531 31.322 348 201 15 36 365 31 358 6.16e-31 120
Msa0652490 MtrunA17_Chr2g0283481 31.445 353 202 16 32 365 43 374 6.55e-30 118
Msa0652490 MtrunA17_Chr3g0104821 30.030 333 201 13 36 349 44 363 1.42e-29 117
Msa0652490 MtrunA17_Chr7g0254461 29.040 396 219 18 12 366 8 382 1.54e-29 117
Msa0652490 MtrunA17_Chr7g0229581 38.509 161 73 6 210 364 7 147 3.90e-28 107
Msa0652490 MtrunA17_Chr1g0160011 29.306 389 210 19 1 353 4 363 4.19e-28 113
Msa0652490 MtrunA17_Chr7g0266061 28.947 342 206 15 31 363 37 350 6.36e-28 112
Msa0652490 MtrunA17_Chr8g0381581 27.225 382 226 14 12 365 16 373 6.96e-28 112
Msa0652490 MtrunA17_Chr1g0159991 29.351 385 215 19 10 365 10 366 1.21e-27 112
Msa0652490 MtrunA17_Chr6g0450701 29.775 356 193 13 31 357 34 361 1.56e-26 108
Msa0652490 MtrunA17_Chr4g0057991 26.923 364 227 13 8 349 6 352 2.74e-26 108
Msa0652490 MtrunA17_Chr7g0273101 27.378 347 209 15 36 357 29 357 4.08e-26 107
Msa0652490 MtrunA17_Chr7g0275291 27.473 364 215 14 12 348 10 351 4.74e-26 107
Msa0652490 MtrunA17_Chr6g0463261 39.496 119 72 0 91 209 6 124 2.02e-25 99.8
Msa0652490 MtrunA17_Chr1g0198351 26.494 385 218 20 9 366 7 353 3.35e-25 104
Msa0652490 MtrunA17_Chr7g0226911 27.720 386 222 17 17 366 11 375 3.62e-25 105
Msa0652490 MtrunA17_Chr6g0469511 42.202 109 63 0 36 144 30 138 6.05e-25 99.0
Msa0652490 MtrunA17_Chr1g0160101 28.721 383 217 17 10 363 16 371 6.25e-25 104
Msa0652490 MtrunA17_Chr8g0347751 27.083 384 221 17 15 365 11 368 1.12e-24 103
Msa0652490 MtrunA17_Chr4g0027561 43.243 111 58 1 18 123 7 117 2.32e-24 97.4
Msa0652490 MtrunA17_Chr8g0352901 27.348 362 223 9 11 348 3 348 2.81e-24 102
Msa0652490 MtrunA17_Chr7g0226941 26.790 377 218 15 22 366 19 369 4.20e-24 102
Msa0652490 MtrunA17_Chr2g0317261 28.611 360 213 18 10 350 1 335 6.97e-24 101
Msa0652490 MtrunA17_Chr3g0093031 27.893 337 208 13 35 352 29 349 8.58e-24 100
Msa0652490 MtrunA17_Chr6g0450731 26.613 372 221 13 9 359 6 346 9.82e-24 100
Msa0652490 MtrunA17_Chr1g0159971 28.075 374 217 16 11 353 20 372 1.45e-23 100
Msa0652490 MtrunA17_Chr3g0112821 27.628 333 209 12 35 352 29 344 1.54e-23 100
Msa0652490 MtrunA17_Chr1g0159981 28.307 378 211 21 10 353 20 371 1.90e-23 100
Msa0652490 MtrunA17_Chr0c01g0489581 28.809 361 209 19 10 349 1 334 2.25e-23 99.8
Msa0652490 MtrunA17_Chr1g0198381 27.190 331 194 14 37 353 3 300 2.76e-23 98.6
Msa0652490 MtrunA17_Chr2g0317271 29.178 353 206 18 16 349 7 334 3.07e-23 99.4
Msa0652490 MtrunA17_Chr0c01g0489571 28.809 361 209 19 10 349 1 334 5.70e-23 98.6
Msa0652490 MtrunA17_Chr1g0178941 25.872 344 196 13 34 353 38 346 1.55e-22 97.4
Msa0652490 MtrunA17_Chr7g0226931 27.342 395 218 15 20 366 16 389 1.95e-22 97.8
Msa0652490 MtrunA17_Chr2g0283511 29.429 333 194 16 41 349 36 351 2.03e-22 97.4
Msa0652490 MtrunA17_Chr6g0450721 26.171 363 232 10 9 359 6 344 2.84e-22 96.7
Msa0652490 MtrunA17_Chr2g0283501 28.367 349 212 15 24 350 19 351 5.46e-22 95.9
Msa0652490 MtrunA17_Chr4g0018571 36.571 175 84 7 197 364 16 170 9.70e-22 91.3
Msa0652490 MtrunA17_Chr1g0178931 25.680 331 211 14 31 353 32 335 1.84e-21 94.0
Msa0652490 MtrunA17_Chr2g0301581 27.405 343 186 12 36 352 34 339 2.82e-21 94.0
Msa0652490 MtrunA17_Chr6g0450711 25.654 382 231 14 9 359 87 446 1.15e-20 93.2
Msa0652490 MtrunA17_Chr1g0189921 51.724 87 41 1 36 122 31 116 1.83e-20 87.0
Msa0652490 MtrunA17_Chr2g0321991 52.273 88 40 2 36 122 33 119 3.86e-20 85.1
Msa0652490 MtrunA17_Chr1g0191461 25.000 344 220 13 36 357 31 358 4.52e-20 90.5
Msa0652490 MtrunA17_Chr2g0301541 26.822 343 188 12 36 352 34 339 1.31e-19 89.0
Msa0652490 MtrunA17_Chr3g0112691 27.794 349 206 16 36 364 30 352 4.33e-19 87.4
Msa0652490 MtrunA17_Chr5g0440501 24.545 220 151 5 136 348 11 222 1.04e-18 84.7
Msa0652490 MtrunA17_Chr6g0469521 35.821 134 69 4 210 338 31 152 6.89e-18 79.7
Msa0652490 MtrunA17_Chr8g0370961 25.000 220 146 5 133 348 14 218 2.26e-17 80.9
Msa0652490 MtrunA17_Chr8g0370971 38.793 116 67 1 11 122 13 128 2.40e-17 78.6
Msa0652490 MtrunA17_Chr3g0096551 26.121 379 225 15 10 352 1 360 3.51e-17 82.0
Msa0652490 MtrunA17_Chr6g0455661 44.037 109 50 4 34 140 29 128 1.15e-16 81.3
Msa0652490 MtrunA17_Chr6g0455661 25.541 231 156 7 131 357 235 453 4.06e-15 76.3
Msa0652490 MtrunA17_Chr8g0339251 26.023 342 209 11 15 337 7 323 1.69e-16 79.7
Msa0652490 MtrunA17_Chr2g0283541 32.571 175 98 7 199 365 122 284 3.38e-16 78.2
Msa0652490 MtrunA17_Chr3g0104831 27.148 291 182 12 78 349 3 282 4.55e-16 78.2
Msa0652490 MtrunA17_Chr4g0018561 45.570 79 39 2 8 86 6 80 9.14e-16 72.4
Msa0652490 MtrunA17_Chr6g0459921 25.862 232 156 7 130 357 123 342 1.80e-15 77.0
Msa0652490 MtrunA17_Chr5g0432081 59.091 44 18 0 303 346 10 53 5.87e-15 69.3
Msa0652490 MtrunA17_Chr2g0308201 50.000 76 37 1 15 90 14 88 3.51e-14 67.8
Msa0652490 MtrunA17_Chr2g0301551 25.000 284 173 10 85 352 36 295 3.87e-12 66.6
Msa0652490 MtrunA17_Chr3g0104801 36.134 119 67 4 36 147 44 160 7.58e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652490 AT5G45960.1 58.383 334 136 1 31 364 42 372 4.91e-148 423
Msa0652490 AT1G06990.1 44.904 314 167 2 36 349 37 344 3.69e-97 293
Msa0652490 AT1G58430.1 45.426 317 164 4 36 350 35 344 1.07e-96 292
Msa0652490 AT2G31540.1 43.323 337 178 6 30 364 29 354 7.63e-94 285
Msa0652490 AT2G30310.1 42.647 340 184 5 15 350 11 343 1.36e-93 284
Msa0652490 AT4G26790.1 42.733 344 171 7 25 360 18 343 3.02e-93 283
Msa0652490 AT4G26790.2 42.733 344 171 7 25 360 18 343 3.02e-93 283
Msa0652490 AT2G24560.1 42.647 340 184 5 15 350 11 343 8.80e-93 282
Msa0652490 AT1G20120.1 42.462 325 175 4 36 356 78 394 5.94e-91 279
Msa0652490 AT2G40250.1 43.711 318 170 3 35 349 35 346 1.64e-90 276
Msa0652490 AT2G30220.1 42.947 319 173 4 36 352 33 344 2.25e-90 276
Msa0652490 AT2G04570.1 42.286 350 176 6 9 350 4 335 2.22e-88 270
Msa0652490 AT3G16370.1 42.547 322 175 4 36 355 30 343 1.97e-87 268
Msa0652490 AT1G75900.1 40.566 318 179 4 36 352 43 351 1.46e-84 261
Msa0652490 AT1G75880.2 38.147 367 208 7 6 365 17 371 1.62e-82 256
Msa0652490 AT5G42170.1 38.608 316 182 4 36 350 50 354 5.87e-82 254
Msa0652490 AT1G20132.1 38.994 318 185 3 36 352 61 370 1.15e-81 254
Msa0652490 AT2G42990.1 38.348 339 194 5 13 346 3 331 2.61e-81 252
Msa0652490 AT1G75890.2 37.901 343 197 6 15 350 22 355 3.67e-81 252
Msa0652490 AT1G75890.3 37.901 343 197 6 15 350 51 384 7.31e-81 253
Msa0652490 AT1G75880.1 38.043 368 208 8 6 365 17 372 1.17e-80 251
Msa0652490 AT5G45950.1 39.222 334 190 4 17 350 21 341 1.92e-80 250
Msa0652490 AT3G14820.1 36.842 361 205 6 13 362 3 351 3.63e-79 247
Msa0652490 AT5G03810.1 37.356 348 202 5 20 363 14 349 5.97e-78 244
Msa0652490 AT1G75890.1 36.517 356 197 7 15 350 22 368 9.26e-78 244
Msa0652490 AT5G03820.1 36.592 358 209 6 12 363 8 353 7.53e-77 241
Msa0652490 AT5G03820.2 36.592 358 209 6 12 363 36 381 2.73e-76 240
Msa0652490 AT3G53100.1 37.349 332 195 6 17 346 12 332 1.01e-73 233
Msa0652490 AT5G63170.1 40.190 316 166 6 36 349 28 322 1.17e-73 232
Msa0652490 AT1G59406.1 34.694 343 208 5 13 350 3 334 3.76e-73 231
Msa0652490 AT1G59030.1 34.694 343 208 5 13 350 3 334 3.76e-73 231
Msa0652490 AT1G58725.1 34.694 343 208 5 13 350 3 334 3.76e-73 231
Msa0652490 AT2G24560.2 41.077 297 164 5 15 307 11 300 1.08e-71 226
Msa0652490 AT5G22810.1 38.170 317 184 4 36 348 34 342 1.21e-70 225
Msa0652490 AT1G20130.2 34.451 328 193 6 36 352 184 500 3.29e-69 226
Msa0652490 AT1G20130.1 34.451 328 193 6 36 352 204 520 4.29e-69 226
Msa0652490 AT3G43570.1 32.653 343 186 4 13 350 3 305 5.89e-69 219
Msa0652490 AT1G73610.1 38.700 323 174 5 32 352 31 331 4.78e-68 218
Msa0652490 AT1G58520.3 34.568 324 193 5 28 350 22 327 1.34e-66 214
Msa0652490 AT1G58525.1 34.568 324 193 5 28 350 22 327 1.34e-66 214
Msa0652490 AT1G20135.1 33.626 342 206 6 13 353 6 327 6.40e-62 201
Msa0652490 AT1G53920.1 33.073 384 219 13 1 364 7 372 1.21e-61 202
Msa0652490 AT1G23500.1 37.960 353 187 9 8 352 4 332 6.37e-60 197
Msa0652490 AT1G75920.2 34.195 348 200 8 9 352 8 330 8.14e-60 196
Msa0652490 AT3G04290.1 34.821 336 205 7 16 348 10 334 1.38e-58 194
Msa0652490 AT1G75910.1 34.627 335 190 7 36 366 28 337 8.76e-57 189
Msa0652490 AT4G28780.1 33.043 345 218 6 6 348 3 336 9.12e-57 189
Msa0652490 AT1G75920.1 32.782 363 200 9 9 352 3 340 7.83e-56 186
Msa0652490 AT1G75930.1 35.920 348 188 10 14 350 5 328 2.86e-55 185
Msa0652490 AT4G10950.2 32.484 314 199 7 36 346 71 374 1.35e-54 185
Msa0652490 AT5G33370.1 32.558 344 215 7 8 348 6 335 2.36e-54 183
Msa0652490 AT3G50400.1 31.944 360 223 10 11 357 4 354 3.20e-54 183
Msa0652490 AT5G18430.1 32.869 359 216 7 10 360 3 344 5.90e-54 182
Msa0652490 AT5G08460.1 32.923 325 207 6 36 357 49 365 1.27e-52 179
Msa0652490 AT4G10950.1 32.484 314 195 8 36 346 71 370 2.53e-52 179
Msa0652490 AT2G31550.1 40.359 223 121 6 143 364 2 213 3.69e-52 173
Msa0652490 AT5G41890.1 32.676 355 215 11 20 362 17 359 2.79e-51 175
Msa0652490 AT3G43550.1 32.881 295 183 4 13 303 3 286 4.09e-51 172
Msa0652490 AT2G23540.1 31.515 330 208 9 36 357 48 367 1.45e-49 171
Msa0652490 AT1G75920.4 32.450 302 185 5 53 352 18 302 4.48e-49 168
Msa0652490 AT1G29670.1 32.565 347 213 10 17 357 11 342 5.19e-49 169
Msa0652490 AT1G29670.2 32.565 347 213 10 17 357 79 410 2.51e-48 169
Msa0652490 AT1G29660.1 29.917 361 231 11 1 357 1 343 1.51e-46 162
Msa0652490 AT1G71250.1 30.114 352 225 9 12 357 17 353 3.99e-46 162
Msa0652490 AT1G74460.1 31.902 326 199 10 38 356 25 334 7.24e-46 161
Msa0652490 AT5G45670.1 30.259 347 225 8 15 357 8 341 1.91e-45 159
Msa0652490 AT5G15720.1 32.432 333 198 11 34 353 28 346 1.65e-44 157
Msa0652490 AT1G33811.1 28.286 350 235 8 8 348 2 344 2.40e-44 157
Msa0652490 AT1G71691.2 31.176 340 209 11 24 357 43 363 4.49e-44 156
Msa0652490 AT5G55050.1 31.054 351 214 10 27 366 27 360 9.49e-44 155
Msa0652490 AT5G33370.2 36.709 237 142 4 8 241 6 237 1.21e-43 154
Msa0652490 AT1G75920.3 29.885 348 184 9 9 352 8 299 1.25e-43 153
Msa0652490 AT1G71120.1 32.432 333 199 13 25 350 20 333 1.66e-43 154
Msa0652490 AT5G37690.1 27.616 344 230 9 10 348 1 330 2.31e-43 154
Msa0652490 AT4G18970.1 30.091 329 211 10 34 357 26 340 3.21e-42 151
Msa0652490 AT3G14225.1 30.769 338 209 9 28 352 29 354 1.05e-41 150
Msa0652490 AT4G18970.2 30.091 329 211 10 34 357 26 340 1.15e-41 150
Msa0652490 AT3G14225.2 30.240 334 212 8 28 352 29 350 1.80e-41 149
Msa0652490 AT2G19010.1 30.347 346 208 12 16 355 10 328 1.80e-40 146
Msa0652490 AT2G19050.1 30.675 326 189 12 38 355 33 329 2.49e-40 145
Msa0652490 AT2G19010.2 31.307 329 193 12 33 355 57 358 2.90e-40 146
Msa0652490 AT5G40990.1 30.982 326 204 8 32 348 33 346 1.12e-39 144
Msa0652490 AT2G19060.1 30.818 318 189 13 38 348 32 325 1.48e-39 144
Msa0652490 AT5G37690.2 27.035 344 224 10 10 348 1 322 1.94e-39 143
Msa0652490 AT1G53940.2 30.000 330 210 8 32 352 35 352 4.02e-38 140
Msa0652490 AT4G16230.1 36.404 228 136 5 9 231 4 227 1.43e-37 135
Msa0652490 AT2G03980.2 31.627 332 200 10 36 358 43 356 4.61e-37 137
Msa0652490 AT2G03980.3 31.627 332 200 10 36 358 43 356 4.61e-37 137
Msa0652490 AT2G03980.1 31.627 332 200 10 36 358 43 356 4.61e-37 137
Msa0652490 AT2G03980.4 31.627 332 200 10 36 358 43 356 4.61e-37 137
Msa0652490 AT1G53990.1 30.240 334 197 10 32 352 31 341 1.38e-36 136
Msa0652490 AT4G30140.1 28.614 339 206 11 38 365 35 348 2.31e-33 127
Msa0652490 AT2G19050.2 30.588 255 156 8 38 289 33 269 3.13e-32 122
Msa0652490 AT1G54790.3 28.877 374 219 14 10 357 8 360 9.05e-31 120
Msa0652490 AT5G15720.2 32.404 287 157 11 34 293 28 304 1.13e-30 119
Msa0652490 AT2G04020.1 37.379 206 114 7 36 235 43 239 2.31e-30 117
Msa0652490 AT1G54010.1 27.614 373 221 15 9 363 8 349 2.85e-30 119
Msa0652490 AT2G04020.2 37.561 205 113 7 36 234 43 238 5.49e-30 117
Msa0652490 AT1G56670.1 29.692 357 213 14 10 348 11 347 1.01e-29 117
Msa0652490 AT1G71691.3 30.070 286 177 10 24 303 43 311 2.99e-29 115
Msa0652490 AT1G53940.1 31.538 260 164 7 32 284 35 287 9.55e-29 114
Msa0652490 AT1G31550.2 29.380 371 229 14 1 352 1 357 2.36e-28 114
Msa0652490 AT1G71691.1 27.698 278 177 10 86 357 3 262 7.22e-28 110
Msa0652490 AT5G45910.1 30.471 361 199 19 33 365 27 363 9.02e-28 112
Msa0652490 AT1G09390.1 29.223 373 210 16 1 348 1 344 2.11e-27 111
Msa0652490 AT1G54000.1 27.500 360 225 14 15 363 15 349 4.83e-27 110
Msa0652490 AT5G15720.3 28.571 280 175 10 87 353 48 315 6.29e-27 109
Msa0652490 AT1G54020.2 25.886 367 229 14 8 363 7 341 8.79e-27 109
Msa0652490 AT5G03610.1 26.596 376 226 19 9 362 7 354 1.94e-26 108
Msa0652490 AT1G31550.1 29.076 368 231 13 1 352 1 354 2.16e-26 108
Msa0652490 AT3G14220.1 26.648 364 230 16 9 363 10 345 2.29e-26 108
Msa0652490 AT1G54030.1 26.332 319 199 11 34 348 50 336 2.76e-26 108
Msa0652490 AT5G14450.1 25.654 382 228 14 15 365 16 372 3.03e-26 108
Msa0652490 AT4G01130.1 27.049 366 214 15 30 365 28 370 6.01e-26 107
Msa0652490 AT2G27360.1 30.270 370 220 14 1 349 1 353 4.15e-25 105
Msa0652490 AT1G67830.1 27.548 363 199 14 36 364 30 362 6.08e-25 104
Msa0652490 AT3G48460.1 26.404 356 226 13 13 349 15 353 6.35e-25 104
Msa0652490 AT1G28580.1 28.729 362 218 15 12 350 13 357 1.29e-24 103
Msa0652490 AT1G54790.1 27.273 341 209 14 40 357 35 359 2.20e-24 103
Msa0652490 AT3G09930.2 25.073 343 212 16 33 359 36 349 3.39e-24 102
Msa0652490 AT3G09930.1 25.073 343 212 16 33 359 36 349 3.39e-24 102
Msa0652490 AT3G05180.1 28.448 348 209 15 36 360 36 366 4.65e-24 102
Msa0652490 AT1G28600.1 28.721 383 221 17 8 365 3 358 1.71e-23 100
Msa0652490 AT1G28610.2 30.137 365 214 14 8 349 3 349 3.41e-23 100
Msa0652490 AT1G28590.1 29.111 371 227 15 1 350 1 356 1.63e-22 98.2
Msa0652490 AT1G28570.1 28.571 371 215 18 9 350 5 354 3.24e-22 97.4
Msa0652490 AT1G28670.1 27.989 368 229 13 8 352 4 358 4.85e-22 96.7
Msa0652490 AT1G28640.1 27.446 368 230 14 8 352 4 357 7.95e-22 96.3
Msa0652490 AT3G26430.1 26.471 374 226 14 10 353 5 359 1.95e-21 94.7
Msa0652490 AT1G28650.1 27.568 370 231 15 6 352 4 359 2.05e-21 94.7
Msa0652490 AT1G28660.1 27.100 369 230 14 8 352 4 357 1.01e-20 92.8
Msa0652490 AT3G62280.1 26.710 307 186 11 74 366 71 352 4.05e-20 90.9
Msa0652490 AT1G56670.2 29.085 306 184 12 11 303 12 297 8.90e-20 89.0
Msa0652490 AT2G36325.1 25.595 336 203 15 33 353 44 347 1.37e-19 89.4
Msa0652490 AT3G14210.1 27.190 331 197 16 36 352 36 336 1.72e-19 89.4
Msa0652490 AT1G28660.2 27.100 369 229 15 8 352 4 356 1.81e-19 89.4
Msa0652490 AT5G03600.1 24.924 329 208 16 33 353 11 308 4.61e-19 87.4
Msa0652490 AT5G03600.2 25.305 328 208 16 33 353 46 343 6.11e-19 87.4
Msa0652490 AT4G01130.3 24.579 297 180 12 99 365 2 284 2.35e-16 79.0
Msa0652490 AT4G16220.1 43.519 108 57 2 15 122 11 114 5.08e-16 77.4
Msa0652490 AT1G54030.2 25.468 267 165 9 34 296 50 286 8.73e-16 77.8
Msa0652490 AT4G01130.2 25.773 291 179 12 30 303 28 298 6.98e-15 75.1
Msa0652490 AT1G53970.2 45.122 82 41 3 32 111 16 95 2.15e-12 63.2
Msa0652490 AT1G53970.1 45.122 82 41 3 32 111 16 95 2.15e-12 63.2
Msa0652490 AT4G16233.1 34.286 105 61 4 254 357 13 110 1.11e-11 62.4

Find 80 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATGTCATTTAGAATTTA+TGG 0.074659 4_3:-60188595 Msa0652490:intron
AAAGTATGTGCTTAATTAAT+TGG 0.111626 4_3:-60187427 Msa0652490:three_prime_UTR
TTGGGATGTTTCAATATTAA+AGG 0.169699 4_3:-60187408 Msa0652490:three_prime_UTR
ATTCAAGGGCATGGAAATTT+TGG 0.186046 4_3:-60188323 Msa0652490:intron
TATTCCATTTGCTTTGATAT+TGG 0.197472 4_3:+60190227 None:intergenic
AGAGCTGGTGCCACCATATT+TGG 0.198902 4_3:-60190877 Msa0652490:CDS
ATCCGTCAAAATATGTCTTT+TGG 0.226927 4_3:-60187724 Msa0652490:CDS
ATTCCATTTGCTTTGATATT+GGG 0.236645 4_3:+60190228 None:intergenic
TTTATGTAGTTGTTGTTTCC+TGG 0.257265 4_3:+60191225 None:intergenic
ATGGTGGCACCAGCTCTTTC+AGG 0.274435 4_3:+60190883 None:intergenic
ATCAATGTTGACTTTCTTGC+TGG 0.308703 4_3:+60187464 None:intergenic
AGCTCTTCATCACTAAGATT+TGG 0.323380 4_3:+60190852 None:intergenic
ATAATATATAAATATAATAT+TGG 0.327515 4_3:+60187604 None:intergenic
CTAAGATTTGGATCCAAATA+TGG 0.329834 4_3:+60190864 None:intergenic
ACTTGTACAGCTTCATATTT+AGG 0.331815 4_3:-60190906 Msa0652490:intron
TGGGATGTTTCAATATTAAA+GGG 0.335516 4_3:-60187407 Msa0652490:three_prime_UTR
TCTATAAGTTCAGATATAAA+AGG 0.349622 4_3:+60187491 None:intergenic
ATTAATTAAGCACATACTTT+GGG 0.358580 4_3:+60187430 None:intergenic
CCCTTGAATCATGTTAACTA+AGG 0.379655 4_3:+60188337 None:intergenic
TGTGGCGATTTGCGACGAAT+AGG 0.381807 4_3:+60187666 None:intergenic
TTCTATATCATGGAAACCTT+TGG 0.381812 4_3:-60191372 Msa0652490:exon
AAGTATGTGCTTAATTAATT+GGG 0.392361 4_3:-60187426 Msa0652490:three_prime_UTR
AATTAATTAAGCACATACTT+TGG 0.392961 4_3:+60187429 None:intergenic
TCATTGCTCATTCTATATCA+TGG 0.400831 4_3:-60191382 Msa0652490:exon
GCCTCTGCCATATATGTGTT+TGG 0.403550 4_3:-60191264 Msa0652490:CDS
TTATGTAGTTGTTGTTTCCT+GGG 0.416792 4_3:+60191226 None:intergenic
AAGCGCATTGTTGGAATTGA+AGG 0.419929 4_3:+60188505 None:intergenic
CTTGCTAACAAAAGTCCTAC+TGG 0.428643 4_3:-60191162 Msa0652490:CDS
AAATATAATATTGGATAGCT+AGG 0.433141 4_3:+60187613 None:intergenic
TCACTTGTTGAAGCAAGAAA+TGG 0.434198 4_3:+60190039 None:intergenic
GGAGTCTCCAAACACATATA+TGG 0.440665 4_3:+60191257 None:intergenic
CCCTTAGTTAACATGATTCA+AGG 0.455114 4_3:-60188338 Msa0652490:CDS
ACGTTCAAGAAGCGCATTGT+TGG 0.468355 4_3:+60188496 None:intergenic
CCTACTGGAAGGTTCTCAAA+TGG 0.468419 4_3:-60191147 Msa0652490:CDS
GAATTGAAGGTGATCATGAT+TGG 0.468447 4_3:+60188518 None:intergenic
TTAGCAAGATCTCTACCATA+AGG 0.470945 4_3:+60191177 None:intergenic
GGTCCCAATATCAAAGCAAA+TGG 0.473430 4_3:-60190231 Msa0652490:CDS
GATCGTGGCTGTTGTGGAAG+TGG 0.479684 4_3:-60187797 Msa0652490:CDS
TTTGTTGGACTACCTCCAAT+GGG 0.480663 4_3:-60188548 Msa0652490:CDS
TTCTCTAATCCTCATGATCA+TGG 0.493325 4_3:-60188392 Msa0652490:CDS
AGCTATGACGTTGTAACTTA+CGG 0.493412 4_3:-60190062 Msa0652490:CDS
TTATGATATGCATTCTCTGT+AGG 0.494531 4_3:+60187689 None:intergenic
CTACTGGAAGGTTCTCAAAT+GGG 0.494537 4_3:-60191146 Msa0652490:CDS
GACCCACTCACACCAACTCT+CGG 0.498199 4_3:-60190789 Msa0652490:CDS
ATATTTAGGCCTGAAAGAGC+TGG 0.506767 4_3:-60190892 Msa0652490:CDS
ACAAGTGAAAGATTTCATAC+AGG 0.506930 4_3:-60190024 Msa0652490:intron
TATGATATGCATTCTCTGTA+GGG 0.521381 4_3:+60187690 None:intergenic
AGGTTCTCAAATGGGAAACT+TGG 0.527047 4_3:-60191138 Msa0652490:CDS
GTTAACATGATTCAAGGGCA+TGG 0.528741 4_3:-60188332 Msa0652490:CDS
TGATGCCCTCGTCAACGACT+AGG 0.538252 4_3:-60187639 Msa0652490:exon
ATGATTGGCAAGCATCCCAT+TGG 0.539739 4_3:+60188533 None:intergenic
ATTTAGAATTTATGGACAGA+AGG 0.542994 4_3:-60188587 Msa0652490:intron
CCTTGAATCATGTTAACTAA+GGG 0.545855 4_3:+60188338 None:intergenic
ACACCGAGAGTTGGTGTGAG+TGG 0.549500 4_3:+60190786 None:intergenic
AAGAGGTTGGAGACTAAGCT+TGG 0.551889 4_3:-60190188 Msa0652490:CDS
GGTTGGAGACTAAGCTTGGT+AGG 0.557831 4_3:-60190184 Msa0652490:CDS
ATTGGCAAGCATCCCATTGG+AGG 0.567001 4_3:+60188536 None:intergenic
AGTGATGAAGAGCTTATGAC+AGG 0.570777 4_3:-60190843 Msa0652490:CDS
TATTGTGGTAGGGTTTGATG+AGG 0.590983 4_3:-60187822 Msa0652490:intron
GTTGTTTCCTGGGTCTACTG+TGG 0.591237 4_3:+60191236 None:intergenic
CACCGAGAGTTGGTGTGAGT+GGG 0.595494 4_3:+60190787 None:intergenic
TCCAAACACATATATGGCAG+AGG 0.597317 4_3:+60191263 None:intergenic
CCATTTGAGAACCTTCCAGT+AGG 0.605578 4_3:+60191147 None:intergenic
TAAGTTCAGATATAAAAGGA+TGG 0.605653 4_3:+60187495 None:intergenic
CCTTAGTTAACATGATTCAA+GGG 0.609810 4_3:-60188337 Msa0652490:CDS
ATCTTAGCACCATGATCATG+AGG 0.611629 4_3:+60188383 None:intergenic
GAGCAATGCATGTGTACCAA+AGG 0.611740 4_3:+60191356 None:intergenic
GAGGTTGATCGTGGCTGTTG+TGG 0.613754 4_3:-60187803 Msa0652490:CDS
GCAAGATCTCTACCATAAGG+TGG 0.616511 4_3:+60191180 None:intergenic
TGTAGATAAATATTCTGTTG+TGG 0.619334 4_3:-60188468 Msa0652490:CDS
TGACGAGGGCATCAAGAATG+TGG 0.620025 4_3:+60187648 None:intergenic
CTAACAAAAGTCCTACTGGA+AGG 0.627868 4_3:-60191158 Msa0652490:CDS
AGAGATAGTACACCGAGAGT+TGG 0.631587 4_3:+60190777 None:intergenic
GTCAAAACCAGAACCAGCAG+AGG 0.644468 4_3:+60190809 None:intergenic
GGGTTTGATGAGGTTGATCG+TGG 0.647867 4_3:-60187812 Msa0652490:CDS
AGGAATCCTAGTCGTTGACG+AGG 0.655855 4_3:+60187633 None:intergenic
AGATTTGGATCCAAATATGG+TGG 0.658891 4_3:+60190867 None:intergenic
GGAGACTCCACAGTAGACCC+AGG 0.678768 4_3:-60191243 Msa0652490:CDS
GGAATCCTAGTCGTTGACGA+GGG 0.702452 4_3:+60187634 None:intergenic
TGTGGCAAGACAGCACAACA+TGG 0.733730 4_3:-60188450 Msa0652490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAATATTTTTTTTAAA+AGG + chr4_3:60189915-60189934 None:intergenic 0.0%
!! ATAATATATAAATATAATAT+TGG + chr4_3:60191214-60191233 None:intergenic 0.0%
!!! GATTTATATTTTTTTTTAAG+AGG - chr4_3:60188859-60188878 Msa0652490:intron 10.0%
!! AAAAGAAATATGATTTAATT+TGG - chr4_3:60189397-60189416 Msa0652490:intron 10.0%
!!! CTTCGTTATTAATTATTTTA+CGG - chr4_3:60188713-60188732 Msa0652490:intron 15.0%
!!! TTTTTGTTTATAATAATGAC+CGG - chr4_3:60189236-60189255 Msa0652490:intron 15.0%
!! CAAATACATTAATTATTAGA+TGG - chr4_3:60190022-60190041 Msa0652490:intron 15.0%
!! TCATCAATATATATGATATT+TGG - chr4_3:60190175-60190194 Msa0652490:CDS 15.0%
!! TATTGTTTACTATTGAATTA+GGG - chr4_3:60190562-60190581 Msa0652490:intron 15.0%
!!! ATAAATTTGACCATTATTTT+TGG + chr4_3:60190660-60190679 None:intergenic 15.0%
!!! TTTTATAGGTACTTAATTTC+TGG - chr4_3:60187706-60187725 Msa0652490:CDS 20.0%
!!! TTAATTTCTGGTTCTTTTAT+AGG - chr4_3:60187718-60187737 Msa0652490:CDS 20.0%
!!! TGATGTTCTATACATATTTT+TGG - chr4_3:60187881-60187900 Msa0652490:intron 20.0%
!! AATTAATCAATTTCAGAATG+TGG - chr4_3:60188563-60188582 Msa0652490:CDS 20.0%
!! ATTTCAAACAATACAAAAAG+AGG - chr4_3:60188610-60188629 Msa0652490:intron 20.0%
!! TTTCATACAGGTAATTAATT+TGG - chr4_3:60188803-60188822 Msa0652490:intron 20.0%
!!! TCTCTTTTTAAATTGTTTCT+TGG + chr4_3:60188948-60188967 None:intergenic 20.0%
!! AAGAGAGAGAAAAAAAAAAA+AGG - chr4_3:60188962-60188981 Msa0652490:intron 20.0%
!!! ATTTTCACTATAAAGTTTAG+AGG + chr4_3:60189048-60189067 None:intergenic 20.0%
!!! GAAAAAAAAAAAAGTACCTT+CGG + chr4_3:60189661-60189680 None:intergenic 20.0%
!!! CAATAATTTTTATGTACATG+AGG + chr4_3:60189699-60189718 None:intergenic 20.0%
!! GTACATAAAAATTATTGTGA+AGG - chr4_3:60189702-60189721 Msa0652490:intron 20.0%
!! TTAATAAGAAATACTCTTTC+CGG - chr4_3:60189928-60189947 Msa0652490:intron 20.0%
!!! TAAGTACTTATATTTAAGAC+CGG - chr4_3:60190059-60190078 Msa0652490:CDS 20.0%
!!! TACATGTCATTTAGAATTTA+TGG - chr4_3:60190220-60190239 Msa0652490:CDS 20.0%
!! CTATTGTTTACTATTGAATT+AGG - chr4_3:60190561-60190580 Msa0652490:intron 20.0%
!! AAATATAATATTGGATAGCT+AGG + chr4_3:60191205-60191224 None:intergenic 20.0%
!! ACAAAAGACAAAAATAAAAG+TGG - chr4_3:60191288-60191307 Msa0652490:CDS 20.0%
!! TCTATAAGTTCAGATATAAA+AGG + chr4_3:60191327-60191346 None:intergenic 20.0%
!! ATTAATTAAGCACATACTTT+GGG + chr4_3:60191388-60191407 None:intergenic 20.0%
!! AATTAATTAAGCACATACTT+TGG + chr4_3:60191389-60191408 None:intergenic 20.0%
!! AAAGTATGTGCTTAATTAAT+TGG - chr4_3:60191388-60191407 Msa0652490:five_prime_UTR 20.0%
!! AAGTATGTGCTTAATTAATT+GGG - chr4_3:60191389-60191408 Msa0652490:five_prime_UTR 20.0%
!! TGTTTTATGGTTAGAATTGA+AGG - chr4_3:60187515-60187534 Msa0652490:three_prime_UTR 25.0%
! TATAGAACATCAATCAAACA+AGG + chr4_3:60187873-60187892 None:intergenic 25.0%
! TCATGATTTAAGCATATGTT+TGG - chr4_3:60188099-60188118 Msa0652490:intron 25.0%
! TAACAACCAACTATTAACAT+CGG + chr4_3:60188302-60188321 None:intergenic 25.0%
!! ATTTTTGTATCCTCGAATAT+TGG - chr4_3:60188502-60188521 Msa0652490:CDS 25.0%
! ATTCCATTTGCTTTGATATT+GGG + chr4_3:60188590-60188609 None:intergenic 25.0%
! TATTCCATTTGCTTTGATAT+TGG + chr4_3:60188591-60188610 None:intergenic 25.0%
!! ATAGCATGTTAAACTTTTGA+TGG + chr4_3:60189096-60189115 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr4_3:60189128-60189147 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4_3:60189201-60189220 None:intergenic 25.0%
!! CAATTATATGTATTCGAGTT+AGG - chr4_3:60189361-60189380 Msa0652490:intron 25.0%
! GAGATAAATACAAAAGTAGA+TGG + chr4_3:60189474-60189493 None:intergenic 25.0%
! ATATTTATGCACTGTACTAA+AGG + chr4_3:60189564-60189583 None:intergenic 25.0%
!! TTGCTCTTTCAAATTTTGTT+GGG + chr4_3:60189786-60189805 None:intergenic 25.0%
!! TTTGCTCTTTCAAATTTTGT+TGG + chr4_3:60189787-60189806 None:intergenic 25.0%
!! CATCTAAAACACTAGAAAAA+GGG - chr4_3:60189812-60189831 Msa0652490:intron 25.0%
! AAGTTGTTTATAATTGAGAC+CGG + chr4_3:60189950-60189969 None:intergenic 25.0%
!!! CTACTTGTTTTACAATATGT+TGG + chr4_3:60190100-60190119 None:intergenic 25.0%
!! ATTTAGAATTTATGGACAGA+AGG - chr4_3:60190228-60190247 Msa0652490:CDS 25.0%
! TGTAGATAAATATTCTGTTG+TGG - chr4_3:60190347-60190366 Msa0652490:intron 25.0%
! TTAAGTTCATCTCTAAATGT+TGG - chr4_3:60190629-60190648 Msa0652490:intron 25.0%
! GTTAGTGAAAATAACTTCAT+AGG - chr4_3:60190889-60190908 Msa0652490:CDS 25.0%
! TGTTTGTATGTATGTTATTG+TGG - chr4_3:60190978-60190997 Msa0652490:intron 25.0%
! TAAGTTCAGATATAAAAGGA+TGG + chr4_3:60191323-60191342 None:intergenic 25.0%
! TTGGGATGTTTCAATATTAA+AGG - chr4_3:60191407-60191426 Msa0652490:five_prime_UTR 25.0%
! TGGGATGTTTCAATATTAAA+GGG - chr4_3:60191408-60191427 Msa0652490:five_prime_UTR 25.0%
TCATTGCTCATTCTATATCA+TGG - chr4_3:60187433-60187452 Msa0652490:three_prime_UTR 30.0%
TTCTATATCATGGAAACCTT+TGG - chr4_3:60187443-60187462 Msa0652490:three_prime_UTR 30.0%
!!! GCTTAGTTTGTTGTGTTTTA+TGG - chr4_3:60187502-60187521 Msa0652490:three_prime_UTR 30.0%
!! TTATGTAGTTGTTGTTTCCT+GGG + chr4_3:60187592-60187611 None:intergenic 30.0%
!! TTTATGTAGTTGTTGTTTCC+TGG + chr4_3:60187593-60187612 None:intergenic 30.0%
!!! AAACTTGGCACTGATTTTAT+AGG - chr4_3:60187692-60187711 Msa0652490:CDS 30.0%
! TTTTCGATGAGATATGAACT+TGG - chr4_3:60187747-60187766 Msa0652490:CDS 30.0%
ACTTGTACAGCTTCATATTT+AGG - chr4_3:60187909-60187928 Msa0652490:intron 30.0%
CTAAGATTTGGATCCAAATA+TGG + chr4_3:60187954-60187973 None:intergenic 30.0%
TAAGCATATGTTTGGTATCA+CGG - chr4_3:60188107-60188126 Msa0652490:intron 30.0%
! AGTGTACCTTTGAAAAATCA+CGG + chr4_3:60188160-60188179 None:intergenic 30.0%
!! TTTTCAAAGGTACACTTTGT+AGG - chr4_3:60188164-60188183 Msa0652490:intron 30.0%
TTGTAGGTTCTGTAAAATCA+CGG - chr4_3:60188180-60188199 Msa0652490:intron 30.0%
AAATGACCGATGTTAATAGT+TGG - chr4_3:60188293-60188312 Msa0652490:intron 30.0%
CTTAATATTGGAAGCAAATG+TGG + chr4_3:60188340-60188359 None:intergenic 30.0%
CACATTTGCTTCCAATATTA+AGG - chr4_3:60188338-60188357 Msa0652490:CDS 30.0%
TTTGCTTCCAATATTAAGGA+TGG - chr4_3:60188342-60188361 Msa0652490:CDS 30.0%
! AACCCTTAATATTTGAAGCT+GGG + chr4_3:60188420-60188439 None:intergenic 30.0%
! AAACCCTTAATATTTGAAGC+TGG + chr4_3:60188421-60188440 None:intergenic 30.0%
!!! TGTTTTGATTCCAATATTCG+AGG + chr4_3:60188515-60188534 None:intergenic 30.0%
CAAACAATACAAAAAGAGGT+TGG - chr4_3:60188614-60188633 Msa0652490:intron 30.0%
!! GCATTATTTTTCATAAGTGC+TGG - chr4_3:60188681-60188700 Msa0652490:intron 30.0%
!! TCATAGCTTTTTCTTCGTAT+TGG + chr4_3:60188741-60188760 None:intergenic 30.0%
ACAAGTGAAAGATTTCATAC+AGG - chr4_3:60188791-60188810 Msa0652490:intron 30.0%
ACAATTAAATTACAGCACTG+AGG - chr4_3:60189005-60189024 Msa0652490:intron 30.0%
TTGTTTATAATAATGACCGG+AGG - chr4_3:60189239-60189258 Msa0652490:intron 30.0%
TGTTTATAATAATGACCGGA+GGG - chr4_3:60189240-60189259 Msa0652490:intron 30.0%
! TTCTCATGATAAGCTCTTTT+TGG - chr4_3:60189583-60189602 Msa0652490:intron 30.0%
!! TAATGACTTTTTCCATACCA+AGG - chr4_3:60189623-60189642 Msa0652490:intron 30.0%
! TATATGTGTTTTCCTTGGTA+TGG + chr4_3:60189638-60189657 None:intergenic 30.0%
! TCTTTCAAATTTTGTTGGGT+TGG + chr4_3:60189782-60189801 None:intergenic 30.0%
! GCATCTAAAACACTAGAAAA+AGG - chr4_3:60189811-60189830 Msa0652490:intron 30.0%
!! GCTAGAAAAATTGCTTTTGT+TGG - chr4_3:60190252-60190271 Msa0652490:intron 30.0%
CCTTGAATCATGTTAACTAA+GGG + chr4_3:60190480-60190499 None:intergenic 30.0%
CCTTAGTTAACATGATTCAA+GGG - chr4_3:60190478-60190497 Msa0652490:intron 30.0%
TTATGATCTTAACCAAGCAA+GGG + chr4_3:60190536-60190555 None:intergenic 30.0%
ATTATGATCTTAACCAAGCA+AGG + chr4_3:60190537-60190556 None:intergenic 30.0%
TACTATTGAATTAGGGAACT+AGG - chr4_3:60190569-60190588 Msa0652490:intron 30.0%
ACTATTGAATTAGGGAACTA+GGG - chr4_3:60190570-60190589 Msa0652490:intron 30.0%
AAAAGTTGTCAAACATGTTG+TGG - chr4_3:60190844-60190863 Msa0652490:CDS 30.0%
TGTATGTATGTTATTGTGGT+AGG - chr4_3:60190982-60191001 Msa0652490:intron 30.0%
GTATGTATGTTATTGTGGTA+GGG - chr4_3:60190983-60191002 Msa0652490:intron 30.0%
! ATCCGTCAAAATATGTCTTT+TGG - chr4_3:60191091-60191110 Msa0652490:intron 30.0%
! TCCGTCAAAATATGTCTTTT+GGG - chr4_3:60191092-60191111 Msa0652490:intron 30.0%
!! TCCCAAAAGACATATTTTGA+CGG + chr4_3:60191096-60191115 None:intergenic 30.0%
TATGATATGCATTCTCTGTA+GGG + chr4_3:60191128-60191147 None:intergenic 30.0%
TTATGATATGCATTCTCTGT+AGG + chr4_3:60191129-60191148 None:intergenic 30.0%
! AAGAGTGATTTTCCACCTTA+TGG - chr4_3:60187623-60187642 Msa0652490:exon 35.0%
TTAGCAAGATCTCTACCATA+AGG + chr4_3:60187641-60187660 None:intergenic 35.0%
TGAGATATGAACTTGGTACT+AGG - chr4_3:60187754-60187773 Msa0652490:CDS 35.0%
AGATTTGGATCCAAATATGG+TGG + chr4_3:60187951-60187970 None:intergenic 35.0%
AGCTCTTCATCACTAAGATT+TGG + chr4_3:60187966-60187985 None:intergenic 35.0%
!! AACACACCGTGATTTTTCAA+AGG - chr4_3:60188151-60188170 Msa0652490:intron 35.0%
TTTAGAAAAAGAAGCTCGAG+TGG + chr4_3:60188276-60188295 None:intergenic 35.0%
TGCATTGCCATCCTTAATAT+TGG + chr4_3:60188352-60188371 None:intergenic 35.0%
TGACCCAGCTTCAAATATTA+AGG - chr4_3:60188414-60188433 Msa0652490:CDS 35.0%
GACCCAGCTTCAAATATTAA+GGG - chr4_3:60188415-60188434 Msa0652490:CDS 35.0%
AGCTATGACGTTGTAACTTA+CGG - chr4_3:60188753-60188772 Msa0652490:intron 35.0%
! TCACTTGTTGAAGCAAGAAA+TGG + chr4_3:60188779-60188798 None:intergenic 35.0%
!! TTACCACAAAAAGTGTCAAC+CGG - chr4_3:60188890-60188909 Msa0652490:intron 35.0%
TGTCTTCCTAAACACTTCTT+TGG + chr4_3:60188916-60188935 None:intergenic 35.0%
TGATGTTACACCAACATCAT+TGG + chr4_3:60189343-60189362 None:intergenic 35.0%
CACTGTACTAAAGGTTCAAA+GGG + chr4_3:60189555-60189574 None:intergenic 35.0%
! TTCGGTATATGTGTTTTCCT+TGG + chr4_3:60189643-60189662 None:intergenic 35.0%
AAGGAAAACACATATACCGA+AGG - chr4_3:60189642-60189661 Msa0652490:intron 35.0%
ATGTACATGAGGATAAAGCT+AGG + chr4_3:60189688-60189707 None:intergenic 35.0%
TTGGTACAAATTACGTTCTC+CGG + chr4_3:60190081-60190100 None:intergenic 35.0%
GCTGATGCTTCATTAACATT+TGG - chr4_3:60190119-60190138 Msa0652490:CDS 35.0%
TTGGTTCAATATTCGATCTC+CGG - chr4_3:60190138-60190157 Msa0652490:CDS 35.0%
GAATTGAAGGTGATCATGAT+TGG + chr4_3:60190300-60190319 None:intergenic 35.0%
TTCTCTAATCCTCATGATCA+TGG - chr4_3:60190423-60190442 Msa0652490:intron 35.0%
CCCTTAGTTAACATGATTCA+AGG - chr4_3:60190477-60190496 Msa0652490:intron 35.0%
CCCTTGAATCATGTTAACTA+AGG + chr4_3:60190481-60190500 None:intergenic 35.0%
!! ATTCAAGGGCATGGAAATTT+TGG - chr4_3:60190492-60190511 Msa0652490:intron 35.0%
AGTTCATCTCTAAATGTTGG+AGG - chr4_3:60190632-60190651 Msa0652490:intron 35.0%
!! GTTGGAGGTACCAAAAATAA+TGG - chr4_3:60190647-60190666 Msa0652490:intron 35.0%
!! ATCAATGTTGACTTTCTTGC+TGG + chr4_3:60191354-60191373 None:intergenic 35.0%
TCCAAACACATATATGGCAG+AGG + chr4_3:60187555-60187574 None:intergenic 40.0%
GGAGTCTCCAAACACATATA+TGG + chr4_3:60187561-60187580 None:intergenic 40.0%
CTTGCTAACAAAAGTCCTAC+TGG - chr4_3:60187653-60187672 Msa0652490:CDS 40.0%
CTAACAAAAGTCCTACTGGA+AGG - chr4_3:60187657-60187676 Msa0652490:CDS 40.0%
CTACTGGAAGGTTCTCAAAT+GGG - chr4_3:60187669-60187688 Msa0652490:CDS 40.0%
AGGTTCTCAAATGGGAAACT+TGG - chr4_3:60187677-60187696 Msa0652490:CDS 40.0%
TGAACTTGGTACTAGGTTAC+AGG - chr4_3:60187761-60187780 Msa0652490:CDS 40.0%
GAACTTGGTACTAGGTTACA+GGG - chr4_3:60187762-60187781 Msa0652490:CDS 40.0%
ATATTTAGGCCTGAAAGAGC+TGG - chr4_3:60187923-60187942 Msa0652490:intron 40.0%
AGTGATGAAGAGCTTATGAC+AGG - chr4_3:60187972-60187991 Msa0652490:intron 40.0%
AAATCATGAACACACACTGC+AGG + chr4_3:60188088-60188107 None:intergenic 40.0%
CGGTGGACATATAAGAATCA+CGG - chr4_3:60188127-60188146 Msa0652490:intron 40.0%
TTTGAGAACAGTGACATGCA+TGG + chr4_3:60188389-60188408 None:intergenic 40.0%
GGTCCCAATATCAAAGCAAA+TGG - chr4_3:60188584-60188603 Msa0652490:CDS 40.0%
TTCCTAAACACTTCTTTGGC+CGG + chr4_3:60188912-60188931 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_3:60189124-60189143 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_3:60189125-60189144 None:intergenic 40.0%
ATCCAAATTCATACTCCCTC+CGG + chr4_3:60189258-60189277 None:intergenic 40.0%
! CATCATTGGTGCGACTTTTT+AGG + chr4_3:60189329-60189348 None:intergenic 40.0%
AAAAGTCGCACCAATGATGT+TGG - chr4_3:60189330-60189349 Msa0652490:intron 40.0%
AGTAGATGGTAGATCGATCT+TGG + chr4_3:60189460-60189479 None:intergenic 40.0%
GGCACTAGAATAGACTAAGT+TGG + chr4_3:60189534-60189553 None:intergenic 40.0%
GCACTGTACTAAAGGTTCAA+AGG + chr4_3:60189556-60189575 None:intergenic 40.0%
CATGAGGATAAAGCTAGGAA+AGG + chr4_3:60189683-60189702 None:intergenic 40.0%
! TTTTGTTGGACTACCTCCAA+TGG - chr4_3:60190266-60190285 Msa0652490:intron 40.0%
TTTGTTGGACTACCTCCAAT+GGG - chr4_3:60190267-60190286 Msa0652490:intron 40.0%
AAGCGCATTGTTGGAATTGA+AGG + chr4_3:60190313-60190332 None:intergenic 40.0%
ATCTTAGCACCATGATCATG+AGG + chr4_3:60190435-60190454 None:intergenic 40.0%
GTTAACATGATTCAAGGGCA+TGG - chr4_3:60190483-60190502 Msa0652490:intron 40.0%
TATTGTGGTAGGGTTTGATG+AGG - chr4_3:60190993-60191012 Msa0652490:intron 40.0%
GAGCAATGCATGTGTACCAA+AGG + chr4_3:60187462-60187481 None:intergenic 45.0%
GCCTCTGCCATATATGTGTT+TGG - chr4_3:60187551-60187570 Msa0652490:three_prime_UTR 45.0%
GCAAGATCTCTACCATAAGG+TGG + chr4_3:60187638-60187657 None:intergenic 45.0%
CCATTTGAGAACCTTCCAGT+AGG + chr4_3:60187671-60187690 None:intergenic 45.0%
CCTACTGGAAGGTTCTCAAA+TGG - chr4_3:60187668-60187687 Msa0652490:CDS 45.0%
AGAGATAGTACACCGAGAGT+TGG + chr4_3:60188041-60188060 None:intergenic 45.0%
GCATATGTTTGGTATCACGG+TGG - chr4_3:60188110-60188129 Msa0652490:intron 45.0%
AAAAGAAGCTCGAGTGGTTG+TGG + chr4_3:60188270-60188289 None:intergenic 45.0%
AAGAGGTTGGAGACTAAGCT+TGG - chr4_3:60188627-60188646 Msa0652490:intron 45.0%
!! AACCGGCCAAAGAAGTGTTT+AGG - chr4_3:60188907-60188926 Msa0652490:intron 45.0%
AACATGCTATGTACTCCCTC+CGG - chr4_3:60189106-60189125 Msa0652490:intron 45.0%
ATTGTGAAGGTAGCTGTGAG+TGG - chr4_3:60189715-60189734 Msa0652490:intron 45.0%
GTGGTAGCTCACACAACTAA+TGG - chr4_3:60189742-60189761 Msa0652490:intron 45.0%
! GATGACATGTACGCATTGAC+CGG + chr4_3:60190160-60190179 None:intergenic 45.0%
ATGATTGGCAAGCATCCCAT+TGG + chr4_3:60190285-60190304 None:intergenic 45.0%
! ACGTTCAAGAAGCGCATTGT+TGG + chr4_3:60190322-60190341 None:intergenic 45.0%
ATGCAATCGTATCCCTTGCT+TGG - chr4_3:60190521-60190540 Msa0652490:intron 45.0%
!! TTAAAAAAAAATATAAATCT+TGG + chr4_3:60188858-60188877 None:intergenic 5.0%
! GTTGTTTCCTGGGTCTACTG+TGG + chr4_3:60187582-60187601 None:intergenic 50.0%
GGGTCAAACACTTACTGCTG+AGG - chr4_3:60187782-60187801 Msa0652490:CDS 50.0%
!! AGAGCTGGTGCCACCATATT+TGG - chr4_3:60187938-60187957 Msa0652490:intron 50.0%
!!! GGAGTTAGTTTTGCCTCTGC+TGG - chr4_3:60187993-60188012 Msa0652490:intron 50.0%
!!! AGTTTTGCCTCTGCTGGTTC+TGG - chr4_3:60187999-60188018 Msa0652490:intron 50.0%
GTCAAAACCAGAACCAGCAG+AGG + chr4_3:60188009-60188028 None:intergenic 50.0%
GGTTGGAGACTAAGCTTGGT+AGG - chr4_3:60188631-60188650 Msa0652490:intron 50.0%
!! TGGCCGGTTGACACTTTTTG+TGG + chr4_3:60188896-60188915 None:intergenic 50.0%
! GACCGGAGGGAGTATGAATT+TGG - chr4_3:60189253-60189272 Msa0652490:intron 50.0%
ATTGGCAAGCATCCCATTGG+AGG + chr4_3:60190282-60190301 None:intergenic 50.0%
TGTGGCAAGACAGCACAACA+TGG - chr4_3:60190365-60190384 Msa0652490:intron 50.0%
! GGGTTTGATGAGGTTGATCG+TGG - chr4_3:60191003-60191022 Msa0652490:intron 50.0%
TGTGGCGATTTGCGACGAAT+AGG + chr4_3:60191152-60191171 None:intergenic 50.0%
!! TGACGAGGGCATCAAGAATG+TGG + chr4_3:60191170-60191189 None:intergenic 50.0%
GGAATCCTAGTCGTTGACGA+GGG + chr4_3:60191184-60191203 None:intergenic 50.0%
AGGAATCCTAGTCGTTGACG+AGG + chr4_3:60191185-60191204 None:intergenic 50.0%
ACTGCTGAGGTGACACGTCA+CGG - chr4_3:60187795-60187814 Msa0652490:CDS 55.0%
ATGGTGGCACCAGCTCTTTC+AGG + chr4_3:60187935-60187954 None:intergenic 55.0%
GACCCACTCACACCAACTCT+CGG - chr4_3:60188026-60188045 Msa0652490:intron 55.0%
!! CACCGAGAGTTGGTGTGAGT+GGG + chr4_3:60188031-60188050 None:intergenic 55.0%
!! ACACCGAGAGTTGGTGTGAG+TGG + chr4_3:60188032-60188051 None:intergenic 55.0%
GGTAGCTGTGAGTGGTTGTG+TGG - chr4_3:60189723-60189742 Msa0652490:intron 55.0%
! GAGGTTGATCGTGGCTGTTG+TGG - chr4_3:60191012-60191031 Msa0652490:intron 55.0%
GATCGTGGCTGTTGTGGAAG+TGG - chr4_3:60191018-60191037 Msa0652490:intron 55.0%
TGATGCCCTCGTCAACGACT+AGG - chr4_3:60191176-60191195 Msa0652490:CDS 55.0%
GGAGACTCCACAGTAGACCC+AGG - chr4_3:60187572-60187591 Msa0652490:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60187399 60191438 60187399 ID=Msa0652490;Name=Msa0652490
chr4_3 mRNA 60187399 60191438 60187399 ID=Msa0652490-mRNA-1;Parent=Msa0652490;Name=Msa0652490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=53|1|1|1|1|1|5|241|366
chr4_3 exon 60187399 60187833 60187399 ID=Msa0652490-mRNA-1:exon:16370;Parent=Msa0652490-mRNA-1
chr4_3 exon 60188324 60188603 60188324 ID=Msa0652490-mRNA-1:exon:16369;Parent=Msa0652490-mRNA-1
chr4_3 exon 60190025 60190258 60190025 ID=Msa0652490-mRNA-1:exon:16368;Parent=Msa0652490-mRNA-1
chr4_3 exon 60190788 60190918 60190788 ID=Msa0652490-mRNA-1:exon:16367;Parent=Msa0652490-mRNA-1
chr4_3 exon 60191124 60191438 60191124 ID=Msa0652490-mRNA-1:exon:16366;Parent=Msa0652490-mRNA-1
chr4_3 five_prime_UTR 60191386 60191438 60191386 ID=Msa0652490-mRNA-1:five_prime_utr;Parent=Msa0652490-mRNA-1
chr4_3 CDS 60191124 60191385 60191124 ID=Msa0652490-mRNA-1:cds;Parent=Msa0652490-mRNA-1
chr4_3 CDS 60190788 60190918 60190788 ID=Msa0652490-mRNA-1:cds;Parent=Msa0652490-mRNA-1
chr4_3 CDS 60190025 60190258 60190025 ID=Msa0652490-mRNA-1:cds;Parent=Msa0652490-mRNA-1
chr4_3 CDS 60188324 60188603 60188324 ID=Msa0652490-mRNA-1:cds;Parent=Msa0652490-mRNA-1
chr4_3 CDS 60187640 60187833 60187640 ID=Msa0652490-mRNA-1:cds;Parent=Msa0652490-mRNA-1
chr4_3 three_prime_UTR 60187399 60187639 60187399 ID=Msa0652490-mRNA-1:three_prime_utr;Parent=Msa0652490-mRNA-1
Gene Sequence

>Msa0652490

ATGGAAACCTTTGGTACACATGCATTGCTCTCTATTGTGCACATTTTCATGCTTAGTTTGTTGTGTTTTATGGTTAGAATTGAAGGTTCAAAGAGTAAAGCCTCTGCCATATATGTGTTTGGAGACTCCACAGTAGACCCAGGAAACAACAACTACATAAACACAGCTTTCAAGAGTGATTTTCCACCTTATGGTAGAGATCTTGCTAACAAAAGTCCTACTGGAAGGTTCTCAAATGGGAAACTTGGCACTGATTTTATAGCTTCATATTTAGGCCTGAAAGAGCTGGTGCCACCATATTTGGATCCAAATCTTAGTGATGAAGAGCTTATGACAGGAGTTAGTTTTGCCTCTGCTGGTTCTGGTTTTGACCCACTCACACCAACTCTCGGTAATGTGGTCCCAATATCAAAGCAAATGGAATATTTCAAACAATACAAAAAGAGGTTGGAGACTAAGCTTGGTAGGCAAAGAACTGAAAATCATATGAACAACGCATTATTTTTCATAAGTGCTGGTACAAATGACTTCGTTATTAATTATTTTACGGTACCAATACGAAGAAAAAGCTATGACGTTGTAACTTACGGCCATTTCTTGCTTCAACAAGTGAAAGATTTCATACAGAATTTATGGACAGAAGGTGCTAGAAAAATTGCTTTTGTTGGACTACCTCCAATGGGATGCTTGCCAATCATGATCACCTTCAATTCCAACAATGCGCTTCTTGAACGTAGTTGTGTAGATAAATATTCTGTTGTGGCAAGACAGCACAACATGGTGCTTCAACATGAATTGTTCTTAATGCAACTCAATTTCTCTAATCCTCATGATCATGGTGCTAAGATCTCTTACATTGACATATATGAACCCTTAGTTAACATGATTCAAGGGCATGGAAATTTTGGGTTTGATGAGGTTGATCGTGGCTGTTGTGGAAGTGGTTTCATTGAAGCAACATTTATGTGTAATCGTGTTTCACATGTATGTTCTGATCCGTCAAAATATGTCTTTTGGGATTCAATACACCCTACAGAGAATGCATATCATAACCTATTCGTCGCAAATCGCCACATTCTTGATGCCCTCGTCAACGACTAG
Protein sequence

>Msa0652490

METFGTHALLSIVHIFMLSLLCFMVRIEGSKSKASAIYVFGDSTVDPGNNNYINTAFKSDFPPYGRDLANKSPTGRFSNGKLGTDFIASYLGLKELVPPYLDPNLSDEELMTGVSFASAGSGFDPLTPTLGNVVPISKQMEYFKQYKKRLETKLGRQRTENHMNNALFFISAGTNDFVINYFTVPIRRKSYDVVTYGHFLLQQVKDFIQNLWTEGARKIAFVGLPPMGCLPIMITFNSNNALLERSCVDKYSVVARQHNMVLQHELFLMQLNFSNPHDHGAKISYIDIYEPLVNMIQGHGNFGFDEVDRGCCGSGFIEATFMCNRVSHVCSDPSKYVFWDSIHPTENAYHNLFVANRHILDALVND*