AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0612240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612240 MtrunA17_Chr4g0046151 96.986 365 11 0 1 365 1 365 0.0 743
Msa0612240 MtrunA17_Chr2g0283191 61.173 358 130 5 15 366 16 370 9.07e-168 473
Msa0612240 MtrunA17_Chr5g0432101 46.567 335 168 4 31 363 28 353 3.40e-105 313
Msa0612240 MtrunA17_Chr1g0156931 43.218 317 171 3 36 352 41 348 1.02e-95 289
Msa0612240 MtrunA17_Chr1g0156921 39.655 348 196 5 12 354 15 353 4.88e-94 285
Msa0612240 MtrunA17_Chr5g0405831 42.500 360 193 8 9 366 17 364 1.72e-92 281
Msa0612240 MtrunA17_Chr5g0405821 43.653 323 170 6 36 355 43 356 1.98e-92 281
Msa0612240 MtrunA17_Chr3g0120861 42.229 341 172 5 32 364 34 357 6.25e-91 277
Msa0612240 MtrunA17_Chr8g0341001 42.296 331 177 5 36 360 32 354 1.18e-90 276
Msa0612240 MtrunA17_Chr8g0371491 40.060 332 187 4 36 366 36 356 3.89e-89 272
Msa0612240 MtrunA17_Chr5g0438641 42.363 347 175 6 9 347 7 336 1.60e-88 270
Msa0612240 MtrunA17_Chr3g0105401 40.113 354 198 8 10 359 4 347 4.60e-88 269
Msa0612240 MtrunA17_Chr1g0156901 39.143 350 197 3 11 352 17 358 1.89e-87 268
Msa0612240 MtrunA17_Chr5g0438621 39.542 349 200 5 9 356 3 341 2.00e-87 268
Msa0612240 MtrunA17_Chr5g0437421 42.769 325 170 5 32 349 28 343 2.91e-87 268
Msa0612240 MtrunA17_Chr5g0438631 39.255 349 201 6 13 359 4 343 4.76e-87 266
Msa0612240 MtrunA17_Chr1g0156891 38.904 365 206 6 7 366 11 363 6.09e-87 267
Msa0612240 MtrunA17_Chr3g0142941 41.956 317 176 2 36 352 47 355 6.80e-87 267
Msa0612240 MtrunA17_Chr8g0371481 41.141 333 183 5 36 366 41 362 5.25e-86 264
Msa0612240 MtrunA17_Chr1g0156911 40.694 317 180 2 36 352 37 345 1.16e-85 263
Msa0612240 MtrunA17_Chr8g0371471 41.195 318 178 4 36 352 41 350 1.75e-84 260
Msa0612240 MtrunA17_Chr2g0330781 38.973 331 185 5 36 364 31 346 2.07e-84 260
Msa0612240 MtrunA17_Chr3g0142921 38.871 319 186 3 36 353 36 346 4.28e-84 259
Msa0612240 MtrunA17_Chr2g0320671 38.393 336 195 6 16 348 9 335 4.29e-76 238
Msa0612240 MtrunA17_Chr1g0157001 37.942 311 182 4 41 350 41 341 3.16e-68 219
Msa0612240 MtrunA17_Chr4g0027521 36.494 348 206 6 20 363 12 348 4.79e-68 218
Msa0612240 MtrunA17_Chr1g0182811 34.582 347 206 8 10 350 11 342 2.88e-63 206
Msa0612240 MtrunA17_Chr7g0275021 36.025 322 193 6 30 348 28 339 3.72e-62 203
Msa0612240 MtrunA17_Chr7g0275011 34.393 346 202 10 10 348 12 339 2.13e-61 201
Msa0612240 MtrunA17_Chr3g0099161 34.018 341 197 8 33 365 89 409 6.05e-58 194
Msa0612240 MtrunA17_Chr6g0457921 36.335 322 189 8 39 356 32 341 2.22e-57 191
Msa0612240 MtrunA17_Chr1g0189901 34.494 316 194 6 36 348 31 336 3.68e-57 190
Msa0612240 MtrunA17_Chr2g0301641 34.188 351 209 9 10 350 14 352 4.09e-57 191
Msa0612240 MtrunA17_Chr7g0274991 33.621 348 210 10 20 360 15 348 6.12e-57 189
Msa0612240 MtrunA17_Chr3g0099151 34.375 352 205 10 10 348 57 395 2.95e-56 189
Msa0612240 MtrunA17_Chr4g0008851 31.445 353 222 7 12 361 10 345 9.55e-56 186
Msa0612240 MtrunA17_Chr5g0444401 35.514 321 186 7 36 348 28 335 7.74e-55 184
Msa0612240 MtrunA17_Chr8g0344941 36.000 325 186 9 36 352 41 351 1.89e-54 183
Msa0612240 MtrunA17_Chr7g0215961 33.799 358 202 11 13 365 8 335 3.10e-54 182
Msa0612240 MtrunA17_Chr1g0189891 33.022 321 187 10 36 348 29 329 3.50e-53 179
Msa0612240 MtrunA17_Chr7g0275001 33.431 341 210 9 22 357 10 338 2.19e-52 177
Msa0612240 MtrunA17_Chr1g0189931 32.622 328 184 7 36 348 32 337 2.46e-52 177
Msa0612240 MtrunA17_Chr3g0099231 32.059 340 204 8 33 365 25 344 1.82e-51 176
Msa0612240 MtrunA17_Chr8g0374101 31.880 367 224 12 10 362 6 360 2.64e-51 175
Msa0612240 MtrunA17_Chr5g0396511 32.381 315 194 8 38 346 48 349 3.34e-51 175
Msa0612240 MtrunA17_Chr2g0294311 31.593 364 222 11 10 359 5 355 3.23e-50 172
Msa0612240 MtrunA17_Chr4g0017431 32.558 344 209 10 15 350 10 338 7.71e-50 171
Msa0612240 MtrunA17_Chr8g0349341 33.333 348 198 11 16 348 10 338 1.82e-48 167
Msa0612240 MtrunA17_Chr8g0380041 30.769 351 220 11 15 357 7 342 2.01e-48 167
Msa0612240 MtrunA17_Chr2g0294301 32.164 342 207 10 33 366 32 356 2.01e-48 167
Msa0612240 MtrunA17_Chr3g0092131 31.818 352 215 12 16 359 3 337 8.73e-48 166
Msa0612240 MtrunA17_Chr3g0086641 32.164 342 209 11 16 346 11 340 9.93e-48 166
Msa0612240 MtrunA17_Chr4g0060811 32.722 327 201 10 38 359 29 341 2.63e-47 164
Msa0612240 MtrunA17_Chr2g0285061 30.321 343 224 8 10 348 6 337 4.57e-47 164
Msa0612240 MtrunA17_Chr4g0068441 31.429 350 219 10 13 357 15 348 6.71e-47 163
Msa0612240 MtrunA17_Chr8g0349321 33.127 323 181 11 36 346 37 336 2.97e-46 161
Msa0612240 MtrunA17_Chr3g0077571 29.912 341 221 9 8 346 4 328 1.13e-45 160
Msa0612240 MtrunA17_Chr8g0344931 31.692 325 189 10 33 348 34 334 6.77e-44 155
Msa0612240 MtrunA17_Chr3g0077581 28.771 358 225 11 16 355 4 349 1.42e-43 154
Msa0612240 MtrunA17_Chr2g0284921 29.052 327 204 9 27 346 25 330 1.25e-42 152
Msa0612240 MtrunA17_Chr3g0131321 30.548 347 223 7 8 346 4 340 2.60e-42 151
Msa0612240 MtrunA17_Chr2g0284951 31.395 344 207 12 9 348 9 327 6.04e-42 150
Msa0612240 MtrunA17_Chr5g0434621 30.721 319 196 11 38 348 27 328 8.33e-42 149
Msa0612240 MtrunA17_Chr7g0229591 36.041 197 121 1 18 209 7 203 2.68e-40 141
Msa0612240 MtrunA17_Chr8g0349301 33.677 291 170 10 36 323 37 307 7.01e-40 143
Msa0612240 MtrunA17_Chr8g0370951 30.548 347 214 13 15 348 9 341 1.01e-39 144
Msa0612240 MtrunA17_Chr4g0027571 33.621 232 128 6 139 364 3 214 2.58e-39 139
Msa0612240 MtrunA17_Chr5g0420811 29.248 359 227 11 10 364 6 341 1.41e-38 140
Msa0612240 MtrunA17_Chr2g0284991 28.909 339 217 10 23 357 20 338 6.63e-38 139
Msa0612240 MtrunA17_Chr2g0285001 29.885 348 214 13 15 355 13 337 1.07e-37 139
Msa0612240 MtrunA17_Chr3g0085881 29.874 318 193 11 36 348 33 325 5.96e-37 136
Msa0612240 MtrunA17_Chr8g0349331 31.464 321 165 9 35 348 34 306 1.41e-36 135
Msa0612240 MtrunA17_Chr8g0370981 27.551 392 213 11 11 348 18 392 6.35e-36 135
Msa0612240 MtrunA17_Chr8g0380031 28.125 320 204 10 31 346 79 376 7.62e-35 132
Msa0612240 MtrunA17_Chr3g0085231 29.464 336 210 10 15 346 10 322 1.55e-34 130
Msa0612240 MtrunA17_Chr2g0284941 26.966 356 210 11 11 357 3 317 3.97e-34 129
Msa0612240 MtrunA17_Chr7g0271551 29.737 380 218 16 3 362 2 352 8.80e-32 123
Msa0612240 MtrunA17_Chr1g0160031 29.695 394 203 18 14 366 12 372 1.33e-31 122
Msa0612240 MtrunA17_Chr2g0283531 31.322 348 201 15 36 365 31 358 3.91e-31 121
Msa0612240 MtrunA17_Chr2g0283481 31.445 353 202 16 32 365 43 374 4.90e-30 119
Msa0612240 MtrunA17_Chr7g0254461 29.040 396 219 18 12 366 8 382 8.53e-30 118
Msa0612240 MtrunA17_Chr3g0104821 30.030 333 201 13 36 349 44 363 1.11e-29 117
Msa0612240 MtrunA17_Chr1g0160011 29.306 389 210 19 1 353 4 363 2.93e-28 114
Msa0612240 MtrunA17_Chr7g0229581 38.509 161 73 6 210 364 7 147 4.46e-28 107
Msa0612240 MtrunA17_Chr7g0266061 28.947 342 206 15 31 363 37 350 4.85e-28 112
Msa0612240 MtrunA17_Chr8g0381581 27.225 382 226 14 12 365 16 373 8.75e-28 112
Msa0612240 MtrunA17_Chr1g0159991 29.351 385 215 19 10 365 10 366 1.52e-27 111
Msa0612240 MtrunA17_Chr6g0450701 29.494 356 194 13 31 357 34 361 1.31e-26 108
Msa0612240 MtrunA17_Chr4g0057991 26.596 376 234 14 8 358 6 364 1.48e-26 108
Msa0612240 MtrunA17_Chr7g0275291 27.473 364 215 14 12 348 10 351 2.95e-26 108
Msa0612240 MtrunA17_Chr7g0273101 27.089 347 210 15 36 357 29 357 6.62e-26 107
Msa0612240 MtrunA17_Chr7g0226911 27.979 386 221 17 17 366 11 375 1.55e-25 106
Msa0612240 MtrunA17_Chr6g0463261 39.496 119 72 0 91 209 6 124 1.98e-25 99.8
Msa0612240 MtrunA17_Chr6g0469511 42.202 109 63 0 36 144 30 138 6.11e-25 99.0
Msa0612240 MtrunA17_Chr1g0160101 28.721 383 217 17 10 363 16 371 6.83e-25 104
Msa0612240 MtrunA17_Chr8g0347751 27.248 367 215 16 15 348 11 358 1.08e-24 103
Msa0612240 MtrunA17_Chr1g0198351 25.781 384 222 19 9 366 7 353 1.86e-24 102
Msa0612240 MtrunA17_Chr8g0352901 27.654 358 219 9 15 348 7 348 1.97e-24 102
Msa0612240 MtrunA17_Chr4g0027561 43.243 111 58 1 18 123 7 117 2.23e-24 97.4
Msa0612240 MtrunA17_Chr6g0450731 26.882 372 220 13 9 359 6 346 2.31e-24 102
Msa0612240 MtrunA17_Chr7g0226941 26.525 377 219 15 22 366 19 369 4.58e-24 102
Msa0612240 MtrunA17_Chr2g0317261 28.611 360 213 18 10 350 1 335 6.70e-24 101
Msa0612240 MtrunA17_Chr3g0093031 27.893 337 208 13 35 352 29 349 6.72e-24 101
Msa0612240 MtrunA17_Chr1g0159971 28.075 374 217 16 11 353 20 372 9.74e-24 101
Msa0612240 MtrunA17_Chr3g0112821 27.628 333 209 12 35 352 29 344 1.24e-23 100
Msa0612240 MtrunA17_Chr1g0159981 28.307 378 211 21 10 353 20 371 1.25e-23 100
Msa0612240 MtrunA17_Chr0c01g0489581 28.809 361 209 19 10 349 1 334 1.53e-23 100
Msa0612240 MtrunA17_Chr2g0317271 29.178 353 206 18 16 349 7 334 1.94e-23 99.8
Msa0612240 MtrunA17_Chr0c01g0489571 28.809 361 209 19 10 349 1 334 3.97e-23 99.0
Msa0612240 MtrunA17_Chr7g0226931 27.595 395 217 15 20 366 16 389 8.56e-23 98.6
Msa0612240 MtrunA17_Chr1g0178941 25.872 344 196 13 34 353 38 346 8.77e-23 98.2
Msa0612240 MtrunA17_Chr6g0450721 26.446 363 231 10 9 359 6 344 8.88e-23 98.2
Msa0612240 MtrunA17_Chr2g0283511 29.706 340 196 17 41 356 36 356 1.05e-22 98.2
Msa0612240 MtrunA17_Chr1g0198381 26.888 331 195 14 37 353 3 300 1.69e-22 96.7
Msa0612240 MtrunA17_Chr2g0283501 28.367 349 212 15 24 350 19 351 3.08e-22 96.7
Msa0612240 MtrunA17_Chr4g0018571 38.235 170 83 7 197 359 16 170 6.15e-22 91.7
Msa0612240 MtrunA17_Chr1g0178931 25.680 331 211 14 31 353 32 335 1.23e-21 94.7
Msa0612240 MtrunA17_Chr2g0301581 27.405 343 186 12 36 352 34 339 1.77e-21 94.4
Msa0612240 MtrunA17_Chr6g0450711 25.916 382 230 14 9 359 87 446 3.28e-21 94.7
Msa0612240 MtrunA17_Chr1g0189921 51.724 87 41 1 36 122 31 116 1.70e-20 87.0
Msa0612240 MtrunA17_Chr2g0321991 52.273 88 40 2 36 122 33 119 4.02e-20 85.1
Msa0612240 MtrunA17_Chr1g0191461 24.709 344 221 13 36 357 31 358 4.27e-20 90.5
Msa0612240 MtrunA17_Chr2g0301541 26.822 343 188 12 36 352 34 339 9.02e-20 89.4
Msa0612240 MtrunA17_Chr3g0112691 27.794 349 206 16 36 364 30 352 3.22e-19 87.8
Msa0612240 MtrunA17_Chr5g0440501 24.545 220 151 5 136 348 11 222 5.19e-19 85.5
Msa0612240 MtrunA17_Chr8g0370961 25.455 220 145 5 133 348 14 218 4.06e-18 82.8
Msa0612240 MtrunA17_Chr6g0469521 35.821 134 69 4 210 338 31 152 7.03e-18 79.7
Msa0612240 MtrunA17_Chr8g0370971 38.793 116 67 1 11 122 13 128 2.33e-17 79.0
Msa0612240 MtrunA17_Chr3g0096551 26.121 379 225 15 10 352 1 360 2.88e-17 82.4
Msa0612240 MtrunA17_Chr6g0455661 44.037 109 50 4 34 140 29 128 1.09e-16 81.3
Msa0612240 MtrunA17_Chr6g0455661 25.112 223 153 6 131 349 235 447 4.36e-15 76.3
Msa0612240 MtrunA17_Chr8g0339251 26.023 342 209 11 15 337 7 323 1.45e-16 79.7
Msa0612240 MtrunA17_Chr2g0283541 32.571 175 98 7 199 365 122 284 2.31e-16 79.0
Msa0612240 MtrunA17_Chr3g0104831 27.148 291 182 12 78 349 3 282 3.48e-16 78.6
Msa0612240 MtrunA17_Chr4g0018561 45.570 79 39 2 8 86 6 80 9.05e-16 72.4
Msa0612240 MtrunA17_Chr6g0459921 25.446 224 153 6 130 349 123 336 2.09e-15 76.6
Msa0612240 MtrunA17_Chr5g0432081 50.820 61 28 1 303 363 10 68 2.81e-15 70.5
Msa0612240 MtrunA17_Chr2g0308201 50.000 76 37 1 15 90 14 88 3.18e-14 67.8
Msa0612240 MtrunA17_Chr2g0301571 25.000 284 173 10 85 352 36 295 1.37e-12 67.8
Msa0612240 MtrunA17_Chr2g0301551 25.000 284 173 10 85 352 36 295 2.58e-12 67.0
Msa0612240 MtrunA17_Chr3g0104801 36.134 119 67 4 36 147 44 160 7.73e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612240 AT5G45960.1 58.683 334 135 1 31 364 42 372 1.06e-148 425
Msa0612240 AT1G06990.1 44.904 314 167 2 36 349 37 344 2.55e-97 293
Msa0612240 AT1G58430.1 44.713 331 170 6 36 364 35 354 6.62e-97 292
Msa0612240 AT2G31540.1 44.411 331 171 7 36 364 35 354 2.39e-94 286
Msa0612240 AT4G26790.1 42.733 344 171 7 25 360 18 343 7.79e-94 284
Msa0612240 AT4G26790.2 42.733 344 171 7 25 360 18 343 7.79e-94 284
Msa0612240 AT2G30310.1 42.647 340 184 5 15 350 11 343 7.80e-94 285
Msa0612240 AT2G24560.1 42.647 340 184 5 15 350 11 343 7.09e-93 282
Msa0612240 AT1G20120.1 42.453 318 174 3 36 352 78 387 3.61e-91 279
Msa0612240 AT2G30220.1 42.947 319 173 4 36 352 33 344 1.56e-90 276
Msa0612240 AT2G40250.1 43.711 318 170 3 35 349 35 346 2.26e-90 276
Msa0612240 AT2G04570.1 42.571 350 175 6 9 350 4 335 3.97e-89 272
Msa0612240 AT3G16370.1 42.547 322 175 4 36 355 30 343 1.57e-87 268
Msa0612240 AT1G75900.1 40.881 318 178 4 36 352 43 351 2.71e-85 263
Msa0612240 AT1G75880.2 38.147 367 208 6 6 365 17 371 2.45e-83 258
Msa0612240 AT5G42170.1 38.924 316 181 4 36 350 50 354 1.07e-82 256
Msa0612240 AT1G20132.1 38.994 318 185 3 36 352 61 370 4.31e-82 255
Msa0612240 AT1G75890.2 38.192 343 196 6 15 350 22 355 6.88e-82 254
Msa0612240 AT2G42990.1 38.235 340 195 5 13 347 3 332 9.78e-82 253
Msa0612240 AT1G75890.3 38.192 343 196 6 15 350 51 384 1.12e-81 254
Msa0612240 AT1G75880.1 38.043 368 208 7 6 365 17 372 1.72e-81 253
Msa0612240 AT5G45950.1 39.222 334 190 4 17 350 21 341 9.40e-81 251
Msa0612240 AT3G14820.1 37.119 361 204 6 13 362 3 351 1.37e-79 248
Msa0612240 AT1G75890.1 36.798 356 196 7 15 350 22 368 1.41e-78 246
Msa0612240 AT5G03810.1 37.644 348 201 5 20 363 14 349 1.41e-78 245
Msa0612240 AT5G03820.1 36.872 358 208 6 12 363 8 353 1.63e-77 243
Msa0612240 AT5G03820.2 36.872 358 208 6 12 363 36 381 7.25e-77 242
Msa0612240 AT5G63170.1 40.506 316 165 6 36 349 28 322 1.96e-74 234
Msa0612240 AT3G53100.1 37.349 332 195 6 17 346 12 332 1.04e-73 233
Msa0612240 AT1G59406.1 34.694 343 208 5 13 350 3 334 1.38e-73 232
Msa0612240 AT1G59030.1 34.694 343 208 5 13 350 3 334 1.38e-73 232
Msa0612240 AT1G58725.1 34.694 343 208 5 13 350 3 334 1.38e-73 232
Msa0612240 AT2G24560.2 41.077 297 164 5 15 307 11 300 1.37e-71 226
Msa0612240 AT5G22810.1 38.170 317 184 4 36 348 34 342 6.36e-71 226
Msa0612240 AT1G20130.2 34.451 328 193 6 36 352 184 500 1.36e-69 227
Msa0612240 AT1G20130.1 34.451 328 193 6 36 352 204 520 1.80e-69 227
Msa0612240 AT3G43570.1 32.653 343 186 4 13 350 3 305 2.57e-69 220
Msa0612240 AT1G73610.1 39.009 323 173 5 32 352 31 331 6.76e-69 220
Msa0612240 AT1G58520.3 34.568 324 193 5 28 350 22 327 4.95e-67 215
Msa0612240 AT1G58525.1 34.568 324 193 5 28 350 22 327 4.95e-67 215
Msa0612240 AT1G20135.1 33.918 342 205 6 13 353 6 327 9.50e-63 204
Msa0612240 AT1G53920.1 32.812 384 220 13 1 364 7 372 7.79e-61 201
Msa0612240 AT1G23500.1 38.244 353 186 9 8 352 4 332 9.81e-61 199
Msa0612240 AT1G75920.2 34.454 357 203 9 9 361 8 337 1.67e-60 198
Msa0612240 AT3G04290.1 35.072 345 208 8 16 357 10 341 1.31e-59 197
Msa0612240 AT4G28780.1 33.333 345 217 6 6 348 3 336 1.51e-57 191
Msa0612240 AT1G75910.1 34.925 335 189 7 36 366 28 337 1.87e-57 191
Msa0612240 AT1G75920.1 33.065 372 203 10 9 361 3 347 1.60e-56 188
Msa0612240 AT1G75930.1 36.207 348 187 10 14 350 5 328 6.23e-56 186
Msa0612240 AT5G33370.1 32.849 344 214 7 8 348 6 335 3.96e-55 185
Msa0612240 AT3G50400.1 32.222 360 222 10 11 357 4 354 8.67e-55 184
Msa0612240 AT5G18430.1 33.148 359 215 7 10 360 3 344 9.81e-55 184
Msa0612240 AT4G10950.2 32.484 314 199 7 36 346 71 374 1.06e-54 185
Msa0612240 AT5G08460.1 33.231 325 206 6 36 357 49 365 3.41e-53 181
Msa0612240 AT2G31550.1 40.807 223 120 6 143 364 2 213 1.65e-52 174
Msa0612240 AT4G10950.1 32.484 314 195 8 36 346 71 370 2.58e-52 179
Msa0612240 AT5G41890.1 32.394 355 216 11 20 362 17 359 2.76e-51 175
Msa0612240 AT3G43550.1 32.881 295 183 4 13 303 3 286 4.45e-51 172
Msa0612240 AT2G23540.1 31.818 330 207 9 36 357 48 367 5.63e-50 172
Msa0612240 AT1G75920.4 32.797 311 188 6 53 361 18 309 9.52e-50 169
Msa0612240 AT1G29670.1 32.853 347 212 10 17 357 11 342 1.37e-49 171
Msa0612240 AT1G29670.2 32.853 347 212 10 17 357 79 410 7.53e-49 170
Msa0612240 AT1G29660.1 30.194 361 230 11 1 357 1 343 4.17e-47 164
Msa0612240 AT1G74460.1 31.902 326 199 10 38 356 25 334 1.56e-46 162
Msa0612240 AT1G71250.1 30.114 352 225 9 12 357 17 353 2.49e-46 162
Msa0612240 AT5G45670.1 30.548 347 224 8 15 357 8 341 5.03e-46 161
Msa0612240 AT1G71691.2 31.471 340 208 11 24 357 43 363 5.43e-45 159
Msa0612240 AT5G15720.1 32.432 333 198 11 34 353 28 346 1.53e-44 157
Msa0612240 AT1G33811.1 28.291 357 238 9 8 355 2 349 1.82e-44 157
Msa0612240 AT1G75920.3 30.252 357 187 10 9 361 8 306 2.54e-44 155
Msa0612240 AT5G55050.1 31.054 351 214 10 27 366 27 360 1.19e-43 155
Msa0612240 AT5G33370.2 36.709 237 142 4 8 241 6 237 1.20e-43 154
Msa0612240 AT1G71120.1 32.432 333 199 13 25 350 20 333 1.97e-43 154
Msa0612240 AT5G37690.1 27.616 344 230 9 10 348 1 330 2.12e-43 154
Msa0612240 AT4G18970.1 30.395 329 210 10 34 357 26 340 8.59e-43 152
Msa0612240 AT4G18970.2 30.395 329 210 10 34 357 26 340 3.14e-42 152
Msa0612240 AT3G14225.1 30.769 338 209 9 28 352 29 354 1.13e-41 150
Msa0612240 AT3G14225.2 30.240 334 212 8 28 352 29 350 2.05e-41 149
Msa0612240 AT5G40990.1 31.288 326 203 8 32 348 33 346 1.74e-40 147
Msa0612240 AT2G19010.1 30.058 346 209 12 16 355 10 328 1.98e-40 146
Msa0612240 AT2G19050.1 30.368 326 190 12 38 355 33 329 2.24e-40 146
Msa0612240 AT2G19010.2 31.003 329 194 12 33 355 57 358 3.46e-40 146
Msa0612240 AT2G19060.1 30.818 318 189 13 38 348 32 325 1.01e-39 144
Msa0612240 AT5G37690.2 26.744 344 225 10 10 348 1 322 2.46e-39 143
Msa0612240 AT1G53940.2 30.303 330 209 8 32 352 35 352 9.17e-39 142
Msa0612240 AT4G16230.1 36.404 228 136 5 9 231 4 227 1.46e-37 135
Msa0612240 AT2G03980.2 31.928 332 199 10 36 358 43 356 1.88e-37 139
Msa0612240 AT2G03980.3 31.928 332 199 10 36 358 43 356 1.88e-37 139
Msa0612240 AT2G03980.1 31.928 332 199 10 36 358 43 356 1.88e-37 139
Msa0612240 AT2G03980.4 31.928 332 199 10 36 358 43 356 1.88e-37 139
Msa0612240 AT1G53990.1 30.539 334 196 10 32 352 31 341 2.48e-37 138
Msa0612240 AT4G30140.1 28.754 313 194 10 38 346 35 322 3.11e-33 127
Msa0612240 AT2G19050.2 30.588 255 156 8 38 289 33 269 3.10e-32 122
Msa0612240 AT1G54010.1 27.882 373 220 15 9 363 8 349 5.90e-31 121
Msa0612240 AT1G54790.3 28.610 374 220 14 10 357 8 360 1.00e-30 120
Msa0612240 AT5G15720.2 32.404 287 157 11 34 293 28 304 1.13e-30 119
Msa0612240 AT2G04020.1 37.379 206 114 7 36 235 43 239 2.31e-30 117
Msa0612240 AT2G04020.2 37.561 205 113 7 36 234 43 238 5.66e-30 117
Msa0612240 AT1G56670.1 29.692 357 213 14 10 348 11 347 1.46e-29 117
Msa0612240 AT1G71691.3 30.070 286 177 10 24 303 43 311 2.90e-29 115
Msa0612240 AT1G53940.1 31.538 260 164 7 32 284 35 287 8.98e-29 114
Msa0612240 AT1G71691.1 28.058 278 176 10 86 357 3 262 9.95e-29 113
Msa0612240 AT1G31550.2 29.380 371 229 14 1 352 1 357 1.99e-28 114
Msa0612240 AT5G45910.1 30.471 361 199 19 33 365 27 363 7.76e-28 112
Msa0612240 AT1G54000.1 27.273 363 222 14 15 363 15 349 1.06e-27 112
Msa0612240 AT1G54020.2 26.158 367 228 14 8 363 7 341 2.09e-27 111
Msa0612240 AT1G09390.1 28.954 373 211 15 1 348 1 344 2.13e-27 111
Msa0612240 AT3G14220.1 26.923 364 229 16 9 363 10 345 4.83e-27 110
Msa0612240 AT5G15720.3 28.571 280 175 10 87 353 48 315 4.94e-27 109
Msa0612240 AT5G03610.1 26.596 376 226 19 9 362 7 354 1.65e-26 108
Msa0612240 AT1G31550.1 29.076 368 231 13 1 352 1 354 1.80e-26 109
Msa0612240 AT1G54030.1 26.332 319 199 11 34 348 50 336 2.31e-26 109
Msa0612240 AT4G01130.1 27.049 366 214 15 30 365 28 370 3.41e-26 108
Msa0612240 AT5G14450.1 25.654 382 228 14 15 365 16 372 4.69e-26 108
Msa0612240 AT2G27360.1 30.270 370 220 14 1 349 1 353 3.47e-25 105
Msa0612240 AT3G48460.1 26.404 356 226 13 13 349 15 353 3.88e-25 105
Msa0612240 AT1G67830.1 28.090 356 197 14 36 357 30 360 5.90e-25 104
Msa0612240 AT1G28580.1 28.729 362 218 15 12 350 13 357 8.52e-25 104
Msa0612240 AT1G54790.1 26.979 341 210 14 40 357 35 359 2.40e-24 103
Msa0612240 AT3G09930.2 24.781 343 213 16 33 359 36 349 3.67e-24 102
Msa0612240 AT3G09930.1 24.781 343 213 16 33 359 36 349 3.67e-24 102
Msa0612240 AT3G05180.1 28.161 348 210 15 36 360 36 366 5.23e-24 102
Msa0612240 AT1G28600.1 28.721 383 221 17 8 365 3 358 1.45e-23 101
Msa0612240 AT1G28610.2 30.137 365 214 14 8 349 3 349 2.86e-23 100
Msa0612240 AT1G28590.1 29.111 371 227 15 1 350 1 356 1.06e-22 99.0
Msa0612240 AT1G28570.1 28.571 371 215 18 9 350 5 354 2.30e-22 97.8
Msa0612240 AT1G28670.1 27.989 368 229 13 8 352 4 358 3.46e-22 97.1
Msa0612240 AT1G28640.1 27.446 368 230 14 8 352 4 357 5.46e-22 96.7
Msa0612240 AT1G28650.1 27.568 370 231 15 6 352 4 359 1.45e-21 95.5
Msa0612240 AT3G26430.1 26.471 374 226 14 10 353 5 359 2.53e-21 94.7
Msa0612240 AT1G28660.1 27.100 369 230 14 8 352 4 357 6.21e-21 93.6
Msa0612240 AT3G14210.1 27.492 331 196 16 36 352 36 336 3.43e-20 91.3
Msa0612240 AT3G62280.1 26.710 307 186 11 74 366 71 352 5.30e-20 90.5
Msa0612240 AT1G56670.2 29.085 306 184 12 11 303 12 297 8.90e-20 89.0
Msa0612240 AT2G36325.1 25.595 336 203 15 33 353 44 347 9.50e-20 89.7
Msa0612240 AT3G27950.1 26.425 386 231 17 8 366 2 361 1.25e-19 89.7
Msa0612240 AT1G28660.2 27.100 369 229 15 8 352 4 356 1.28e-19 89.7
Msa0612240 AT5G03600.2 25.305 328 208 16 33 353 46 343 4.09e-19 87.8
Msa0612240 AT5G03600.1 25.305 328 208 16 33 353 11 308 4.10e-19 87.4
Msa0612240 AT4G01130.3 24.579 297 180 12 99 365 2 284 1.54e-16 79.7
Msa0612240 AT4G16220.1 43.519 108 57 2 15 122 11 114 4.79e-16 77.4
Msa0612240 AT1G54030.2 25.468 267 165 9 34 296 50 286 8.56e-16 77.8
Msa0612240 AT4G01130.2 25.773 291 179 12 30 303 28 298 5.74e-15 75.5
Msa0612240 AT1G53970.2 45.122 82 41 3 32 111 16 95 2.13e-12 63.2
Msa0612240 AT1G53970.1 45.122 82 41 3 32 111 16 95 2.13e-12 63.2
Msa0612240 AT4G16233.1 35.238 105 60 4 254 357 13 110 5.37e-12 63.2

Find 81 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATGTCATTTAGAATTTA+TGG 0.074659 4_2:-60674480 Msa0612240:intron
AAAGTATGTGCTTAATTAAT+TGG 0.111626 4_2:-60673314 Msa0612240:three_prime_UTR
TTGGGATGTTTCAATATTAA+AGG 0.169699 4_2:-60673295 Msa0612240:three_prime_UTR
ATTCAAGGGCATGGAAATTT+TGG 0.186046 4_2:-60674208 Msa0612240:intron
TATTCCATTTGCTTTGATAT+TGG 0.197472 4_2:+60675964 None:intergenic
AGAGCTGGTGCCACCATATT+TGG 0.198902 4_2:-60676614 Msa0612240:CDS
ATCCGTCAAAATATGTCTTT+TGG 0.226927 4_2:-60673611 Msa0612240:CDS
ATTCCATTTGCTTTGATATT+GGG 0.236645 4_2:+60675965 None:intergenic
TTTATGTAGTTGTTGTTTCC+TGG 0.257265 4_2:+60676962 None:intergenic
ATGGTGGCACCAGCTCTTTC+AGG 0.274435 4_2:+60676620 None:intergenic
ATCAATGTTGACTTTCTTGC+TGG 0.308703 4_2:+60673351 None:intergenic
AGCTCTTCATCACTAAGATT+TGG 0.323380 4_2:+60676589 None:intergenic
ATAATATATAAATATAATAT+TGG 0.327515 4_2:+60673491 None:intergenic
CTAAGATTTGGATCCAAATA+TGG 0.329834 4_2:+60676601 None:intergenic
ACTTGTACAGCTTCATATTT+AGG 0.331815 4_2:-60676643 Msa0612240:intron
TGGGATGTTTCAATATTAAA+GGG 0.335516 4_2:-60673294 Msa0612240:three_prime_UTR
TCTATAAGTTCAGATATAAA+AGG 0.349622 4_2:+60673378 None:intergenic
ATTAATTAAGCACATACTTT+GGG 0.358580 4_2:+60673317 None:intergenic
CCCTTGAATCATGTTAACTA+AGG 0.379655 4_2:+60674222 None:intergenic
TTCTATATCATGGAAACCTT+TGG 0.381812 4_2:-60677109 Msa0612240:exon
AAGTATGTGCTTAATTAATT+GGG 0.392361 4_2:-60673313 Msa0612240:three_prime_UTR
AATTAATTAAGCACATACTT+TGG 0.392961 4_2:+60673316 None:intergenic
TCATTGCTCATTCTATATCA+TGG 0.400831 4_2:-60677119 Msa0612240:exon
GCCTCTGCCATATATGTGTT+TGG 0.403550 4_2:-60677001 Msa0612240:CDS
TGTGGCGATTTGCGATGAAT+AGG 0.409640 4_2:+60673553 None:intergenic
TTATGTAGTTGTTGTTTCCT+GGG 0.416792 4_2:+60676963 None:intergenic
AAGCGCATTGTTGGAATTGA+AGG 0.419929 4_2:+60674390 None:intergenic
CTTGCTAACAAAAGTCCTAC+TGG 0.428643 4_2:-60676899 Msa0612240:CDS
AAATATAATATTGGATAGCT+AGG 0.433141 4_2:+60673500 None:intergenic
TCACTTGTTGAAGCAAGAAA+TGG 0.434198 4_2:+60675776 None:intergenic
GGAGTCTCCAAACACATATA+TGG 0.440665 4_2:+60676994 None:intergenic
TTATGATATGCCTTCTCTGT+AGG 0.447250 4_2:+60673576 None:intergenic
CCCTTAGTTAACATGATTCA+AGG 0.455114 4_2:-60674223 Msa0612240:CDS
ACGTTCAAGAAGCGCATTGT+TGG 0.468355 4_2:+60674381 None:intergenic
CCTACTGGAAGGTTCTCAAA+TGG 0.468419 4_2:-60676884 Msa0612240:CDS
GAATTGAAGGTGATCATGAT+TGG 0.468447 4_2:+60674403 None:intergenic
TTAGCAAGATCTCTACCATA+AGG 0.470945 4_2:+60676914 None:intergenic
GGTCCCAATATCAAAGCAAA+TGG 0.473430 4_2:-60675968 Msa0612240:CDS
TATGATATGCCTTCTCTGTA+GGG 0.477550 4_2:+60673577 None:intergenic
GATCGTGGCTGTTGTGGAAG+TGG 0.479684 4_2:-60673684 Msa0612240:CDS
TTTGTTGGACTACCTCCAAT+GGG 0.480663 4_2:-60674433 Msa0612240:CDS
TTCTCTAATCCTCATGATCA+TGG 0.493325 4_2:-60674277 Msa0612240:CDS
AGCTATGACGTTGTAACTTA+CGG 0.493412 4_2:-60675799 Msa0612240:CDS
CTACTGGAAGGTTCTCAAAT+GGG 0.494537 4_2:-60676883 Msa0612240:CDS
GACCCACTCACACCAACTCT+CGG 0.498199 4_2:-60676526 Msa0612240:CDS
ATATTTAGGCCTGAAAGAGC+TGG 0.506767 4_2:-60676629 Msa0612240:CDS
ACAAGTGAAAGATTTCATAC+AGG 0.506930 4_2:-60675761 Msa0612240:intron
AGGTTCTCAAATGGGAAACT+TGG 0.527047 4_2:-60676875 Msa0612240:CDS
GTTAACATGATTCAAGGGCA+TGG 0.528741 4_2:-60674217 Msa0612240:CDS
TGATGCCCTCGTCAACGACT+AGG 0.538252 4_2:-60673526 Msa0612240:exon
ATGATTGGCAAGCATCCCAT+TGG 0.539739 4_2:+60674418 None:intergenic
ATTTAGAATTTATGGACAGA+AGG 0.542994 4_2:-60674472 Msa0612240:intron
CCTTGAATCATGTTAACTAA+GGG 0.545855 4_2:+60674223 None:intergenic
ACACCGAGAGTTGGTGTGAG+TGG 0.549500 4_2:+60676523 None:intergenic
AAGAGGTTGGAGACTAAGCT+TGG 0.551889 4_2:-60675925 Msa0612240:CDS
GGTTGGAGACTAAGCTTGGT+AGG 0.557831 4_2:-60675921 Msa0612240:CDS
ATTGGCAAGCATCCCATTGG+AGG 0.567001 4_2:+60674421 None:intergenic
AGTGATGAAGAGCTTATGAC+AGG 0.570777 4_2:-60676580 Msa0612240:CDS
TATTGTGGTAGGGTTTGATG+AGG 0.590983 4_2:-60673709 Msa0612240:intron
GTTGTTTCCTGGGTCTACTG+TGG 0.591237 4_2:+60676973 None:intergenic
CACCGAGAGTTGGTGTGAGT+GGG 0.595494 4_2:+60676524 None:intergenic
TCCAAACACATATATGGCAG+AGG 0.597317 4_2:+60677000 None:intergenic
TTCAATACACCCTACAGAGA+AGG 0.597679 4_2:-60673586 Msa0612240:CDS
CCATTTGAGAACCTTCCAGT+AGG 0.605578 4_2:+60676884 None:intergenic
TAAGTTCAGATATAAAAGGA+TGG 0.605653 4_2:+60673382 None:intergenic
CCTTAGTTAACATGATTCAA+GGG 0.609810 4_2:-60674222 Msa0612240:CDS
ATCTTAGCACCATGATCATG+AGG 0.611629 4_2:+60674268 None:intergenic
GAGCAATGCATGTGTACCAA+AGG 0.611740 4_2:+60677093 None:intergenic
GAGGTTGATCGTGGCTGTTG+TGG 0.613754 4_2:-60673690 Msa0612240:CDS
GCAAGATCTCTACCATAAGG+TGG 0.616511 4_2:+60676917 None:intergenic
TGTAGATAAATATTCTGTTG+TGG 0.619334 4_2:-60674353 Msa0612240:CDS
TGACGAGGGCATCAAGAATG+TGG 0.620025 4_2:+60673535 None:intergenic
CTAACAAAAGTCCTACTGGA+AGG 0.627868 4_2:-60676895 Msa0612240:CDS
AGAGATAGTACACCGAGAGT+TGG 0.631587 4_2:+60676514 None:intergenic
GTCAAAACCAGAACCAGCAG+AGG 0.644468 4_2:+60676546 None:intergenic
GGGTTTGATGAGGTTGATCG+TGG 0.647867 4_2:-60673699 Msa0612240:CDS
AGGAATCCTAGTCGTTGACG+AGG 0.655855 4_2:+60673520 None:intergenic
AGATTTGGATCCAAATATGG+TGG 0.658891 4_2:+60676604 None:intergenic
GGAGACTCCACAGTAGACCC+AGG 0.678768 4_2:-60676980 Msa0612240:CDS
GGAATCCTAGTCGTTGACGA+GGG 0.702452 4_2:+60673521 None:intergenic
TGTGGCAAGACAGCACAACA+TGG 0.733730 4_2:-60674335 Msa0612240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATTTTTTTTTAAA+AGG + chr4_2:60675653-60675672 None:intergenic 0.0%
!! ATAATATATAAATATAATAT+TGG + chr4_2:60676951-60676970 None:intergenic 0.0%
!!! GATTTATATTTTTTTTTAAG+AGG - chr4_2:60674746-60674765 Msa0612240:intron 10.0%
!! AAAAGAAATATGATTTAATT+TGG - chr4_2:60675134-60675153 Msa0612240:intron 10.0%
!!! CTTCGTTATTAATTATTTTA+CGG - chr4_2:60674600-60674619 Msa0612240:intron 15.0%
!!! AAAAAAAAAAAAAGTACCTT+CGG + chr4_2:60675398-60675417 None:intergenic 15.0%
!! CAAATACATTAATTATTAGA+TGG - chr4_2:60675761-60675780 Msa0612240:intron 15.0%
!! TCATCAATATATATGATATT+TGG - chr4_2:60675914-60675933 Msa0612240:CDS 15.0%
!! TATTGTTTACTATTGAATTA+GGG - chr4_2:60676301-60676320 Msa0612240:intron 15.0%
!!! AAAACAAATTTCACATTTTT+GGG + chr4_2:60676350-60676369 None:intergenic 15.0%
!!! AAAAACAAATTTCACATTTT+TGG + chr4_2:60676351-60676370 None:intergenic 15.0%
!!! ATAAATTTGACCATTATTTT+TGG + chr4_2:60676400-60676419 None:intergenic 15.0%
!!! TTTTATAGGTACTTAATTTC+TGG - chr4_2:60673593-60673612 Msa0612240:CDS 20.0%
!!! TTAATTTCTGGTTCTTTTAT+AGG - chr4_2:60673605-60673624 Msa0612240:CDS 20.0%
!!! TGATGTTCTATACATATTTT+TGG - chr4_2:60673768-60673787 Msa0612240:intron 20.0%
!! AATTAATCAATTTCAGAATG+TGG - chr4_2:60674450-60674469 Msa0612240:CDS 20.0%
!! ATTTCAAACAATACAAAAAG+AGG - chr4_2:60674497-60674516 Msa0612240:intron 20.0%
!! TTTCATACAGGTAATTAATT+TGG - chr4_2:60674690-60674709 Msa0612240:intron 20.0%
!!! TCTCTTTTTAAATTGTTTCT+TGG + chr4_2:60674835-60674854 None:intergenic 20.0%
!! AAAAGAGAGAGAAAAAAAAA+AGG - chr4_2:60674847-60674866 Msa0612240:intron 20.0%
!!! ATTTTCACTATAAAGTTTAG+AGG + chr4_2:60674933-60674952 None:intergenic 20.0%
!!! CAATAATTTTTATGTACATG+AGG + chr4_2:60675437-60675456 None:intergenic 20.0%
!! GTACATAAAAATTATTGTGA+AGG - chr4_2:60675440-60675459 Msa0612240:intron 20.0%
!! TTAATAAGAAATACTCTTTC+CGG - chr4_2:60675667-60675686 Msa0612240:intron 20.0%
!!! TAAGTACTTATATTTAAGAC+CGG - chr4_2:60675798-60675817 Msa0612240:CDS 20.0%
!!! TACATGTCATTTAGAATTTA+TGG - chr4_2:60675959-60675978 Msa0612240:CDS 20.0%
!! CTATTGTTTACTATTGAATT+AGG - chr4_2:60676300-60676319 Msa0612240:intron 20.0%
!! AAATATAATATTGGATAGCT+AGG + chr4_2:60676942-60676961 None:intergenic 20.0%
!! ACAAAAGACAAAAATAAAAG+TGG - chr4_2:60677025-60677044 Msa0612240:CDS 20.0%
!! TCTATAAGTTCAGATATAAA+AGG + chr4_2:60677064-60677083 None:intergenic 20.0%
!! ATTAATTAAGCACATACTTT+GGG + chr4_2:60677125-60677144 None:intergenic 20.0%
!! AATTAATTAAGCACATACTT+TGG + chr4_2:60677126-60677145 None:intergenic 20.0%
!! AAAGTATGTGCTTAATTAAT+TGG - chr4_2:60677125-60677144 Msa0612240:five_prime_UTR 20.0%
!! AAGTATGTGCTTAATTAATT+GGG - chr4_2:60677126-60677145 Msa0612240:five_prime_UTR 20.0%
!! TGTTTTATGGTTAGAATTGA+AGG - chr4_2:60673402-60673421 Msa0612240:three_prime_UTR 25.0%
! TCATGATTTAAGCATATGTT+TGG - chr4_2:60673986-60674005 Msa0612240:intron 25.0%
! TAACAACCAACTATTAACAT+CGG + chr4_2:60674189-60674208 None:intergenic 25.0%
!! ATTTTTGTATCCTCGAATAT+TGG - chr4_2:60674389-60674408 Msa0612240:CDS 25.0%
! ATTCCATTTGCTTTGATATT+GGG + chr4_2:60674477-60674496 None:intergenic 25.0%
! TATTCCATTTGCTTTGATAT+TGG + chr4_2:60674478-60674497 None:intergenic 25.0%
!! ATAGCATGTTAAACTTTTGA+TGG + chr4_2:60674981-60675000 None:intergenic 25.0%
! TAACATGCTATGTATGAATT+TGG - chr4_2:60674990-60675009 Msa0612240:intron 25.0%
!! CAATTATATGTATTCGAGTT+AGG - chr4_2:60675098-60675117 Msa0612240:intron 25.0%
! GAGATAAATACAAAAGTAGA+TGG + chr4_2:60675211-60675230 None:intergenic 25.0%
! ATATTTATGCACTGTACTAA+AGG + chr4_2:60675301-60675320 None:intergenic 25.0%
!! TATATATGTTTTCCTTGGTA+TGG + chr4_2:60675375-60675394 None:intergenic 25.0%
!! TTGCTCTTTCAAATTTTGTT+GGG + chr4_2:60675524-60675543 None:intergenic 25.0%
!! TTTGCTCTTTCAAATTTTGT+TGG + chr4_2:60675525-60675544 None:intergenic 25.0%
!! CATCTAAAACACTAGAAAAA+GGG - chr4_2:60675550-60675569 Msa0612240:intron 25.0%
! AAGTTGTTTATAATTGAGAC+CGG + chr4_2:60675689-60675708 None:intergenic 25.0%
!!! CTACTTGTTTTACAATATGT+TGG + chr4_2:60675839-60675858 None:intergenic 25.0%
!! ATTTAGAATTTATGGACAGA+AGG - chr4_2:60675967-60675986 Msa0612240:CDS 25.0%
! TGTAGATAAATATTCTGTTG+TGG - chr4_2:60676086-60676105 Msa0612240:intron 25.0%
! TTAAGTTCATCTCTAAATGT+TGG - chr4_2:60676369-60676388 Msa0612240:intron 25.0%
! TTTAAAAGTTGTCAAACATG+TGG - chr4_2:60676581-60676600 Msa0612240:CDS 25.0%
! GTTAGTGAAAATAACTTCAT+AGG - chr4_2:60676626-60676645 Msa0612240:CDS 25.0%
! TGTTTGTATGTATGTTATTG+TGG - chr4_2:60676715-60676734 Msa0612240:intron 25.0%
! TAAGTTCAGATATAAAAGGA+TGG + chr4_2:60677060-60677079 None:intergenic 25.0%
! TTGGGATGTTTCAATATTAA+AGG - chr4_2:60677144-60677163 Msa0612240:five_prime_UTR 25.0%
! TGGGATGTTTCAATATTAAA+GGG - chr4_2:60677145-60677164 Msa0612240:five_prime_UTR 25.0%
TCATTGCTCATTCTATATCA+TGG - chr4_2:60673320-60673339 Msa0612240:three_prime_UTR 30.0%
TTCTATATCATGGAAACCTT+TGG - chr4_2:60673330-60673349 Msa0612240:three_prime_UTR 30.0%
!!! GCTTAGTTTGTTGTGTTTTA+TGG - chr4_2:60673389-60673408 Msa0612240:three_prime_UTR 30.0%
!! TTATGTAGTTGTTGTTTCCT+GGG + chr4_2:60673479-60673498 None:intergenic 30.0%
!! TTTATGTAGTTGTTGTTTCC+TGG + chr4_2:60673480-60673499 None:intergenic 30.0%
!!! AAACTTGGCACTGATTTTAT+AGG - chr4_2:60673579-60673598 Msa0612240:CDS 30.0%
! TTTTCGATGAGATATGAACT+TGG - chr4_2:60673634-60673653 Msa0612240:CDS 30.0%
ACTTGTACAGCTTCATATTT+AGG - chr4_2:60673796-60673815 Msa0612240:intron 30.0%
CTAAGATTTGGATCCAAATA+TGG + chr4_2:60673841-60673860 None:intergenic 30.0%
TAAGCATATGTTTGGTATCA+CGG - chr4_2:60673994-60674013 Msa0612240:intron 30.0%
! AGTGTACCTTTGAAAAATCA+CGG + chr4_2:60674047-60674066 None:intergenic 30.0%
!! TTTTCAAAGGTACACTTTGT+AGG - chr4_2:60674051-60674070 Msa0612240:intron 30.0%
TTGTAGGTTCTGTAAAATCA+CGG - chr4_2:60674067-60674086 Msa0612240:intron 30.0%
AAATGACCGATGTTAATAGT+TGG - chr4_2:60674180-60674199 Msa0612240:intron 30.0%
CTTAATATTGGAAGCAAATG+TGG + chr4_2:60674227-60674246 None:intergenic 30.0%
CACATTTGCTTCCAATATTA+AGG - chr4_2:60674225-60674244 Msa0612240:CDS 30.0%
TTTGCTTCCAATATTAAGGA+TGG - chr4_2:60674229-60674248 Msa0612240:CDS 30.0%
! AACCCTTAATATTTGAAGCT+GGG + chr4_2:60674307-60674326 None:intergenic 30.0%
! AAACCCTTAATATTTGAAGC+TGG + chr4_2:60674308-60674327 None:intergenic 30.0%
!!! TGTTTTGATTCCAATATTCG+AGG + chr4_2:60674402-60674421 None:intergenic 30.0%
CAAACAATACAAAAAGAGGT+TGG - chr4_2:60674501-60674520 Msa0612240:intron 30.0%
!! GCATTATTTTTCATAAGTGC+TGG - chr4_2:60674568-60674587 Msa0612240:intron 30.0%
!! TCATAGCTTTTTCTTCGTAT+TGG + chr4_2:60674628-60674647 None:intergenic 30.0%
ACAAGTGAAAGATTTCATAC+AGG - chr4_2:60674678-60674697 Msa0612240:intron 30.0%
ACAATTAAATTACAGCACTG+AGG - chr4_2:60674890-60674909 Msa0612240:intron 30.0%
! TTCTCATGATAAGCTCTTTT+TGG - chr4_2:60675320-60675339 Msa0612240:intron 30.0%
!! TAATGACTTTTTCCATACCA+AGG - chr4_2:60675360-60675379 Msa0612240:intron 30.0%
! TTCGGTATATATGTTTTCCT+TGG + chr4_2:60675380-60675399 None:intergenic 30.0%
AAGGAAAACATATATACCGA+AGG - chr4_2:60675379-60675398 Msa0612240:intron 30.0%
! TCTTTCAAATTTTGTTGGGT+TGG + chr4_2:60675520-60675539 None:intergenic 30.0%
! GCATCTAAAACACTAGAAAA+AGG - chr4_2:60675549-60675568 Msa0612240:intron 30.0%
!! GCTAGAAAAATTGCTTTTGT+TGG - chr4_2:60675991-60676010 Msa0612240:intron 30.0%
CCTTGAATCATGTTAACTAA+GGG + chr4_2:60676219-60676238 None:intergenic 30.0%
CCTTAGTTAACATGATTCAA+GGG - chr4_2:60676217-60676236 Msa0612240:intron 30.0%
TTATGATCTTAACCAAGCAA+GGG + chr4_2:60676275-60676294 None:intergenic 30.0%
ATTATGATCTTAACCAAGCA+AGG + chr4_2:60676276-60676295 None:intergenic 30.0%
TACTATTGAATTAGGGAACT+AGG - chr4_2:60676308-60676327 Msa0612240:intron 30.0%
ACTATTGAATTAGGGAACTA+GGG - chr4_2:60676309-60676328 Msa0612240:intron 30.0%
TGTATGTATGTTATTGTGGT+AGG - chr4_2:60676719-60676738 Msa0612240:intron 30.0%
GTATGTATGTTATTGTGGTA+GGG - chr4_2:60676720-60676739 Msa0612240:intron 30.0%
! ATCCGTCAAAATATGTCTTT+TGG - chr4_2:60676828-60676847 Msa0612240:intron 30.0%
! TCCGTCAAAATATGTCTTTT+GGG - chr4_2:60676829-60676848 Msa0612240:intron 30.0%
!! TCCCAAAAGACATATTTTGA+CGG + chr4_2:60676833-60676852 None:intergenic 30.0%
! AAGAGTGATTTTCCACCTTA+TGG - chr4_2:60673510-60673529 Msa0612240:exon 35.0%
TTAGCAAGATCTCTACCATA+AGG + chr4_2:60673528-60673547 None:intergenic 35.0%
TGAGATATGAACTTGGTACT+AGG - chr4_2:60673641-60673660 Msa0612240:CDS 35.0%
AGATTTGGATCCAAATATGG+TGG + chr4_2:60673838-60673857 None:intergenic 35.0%
AGCTCTTCATCACTAAGATT+TGG + chr4_2:60673853-60673872 None:intergenic 35.0%
CGGTGGACATATAAGAATTA+CGG - chr4_2:60674014-60674033 Msa0612240:intron 35.0%
!! AACACACCGTGATTTTTCAA+AGG - chr4_2:60674038-60674057 Msa0612240:intron 35.0%
TTTAGAAAAAGAAGCTCGAG+TGG + chr4_2:60674163-60674182 None:intergenic 35.0%
TGCATTGCCATCCTTAATAT+TGG + chr4_2:60674239-60674258 None:intergenic 35.0%
TGACCCAGCTTCAAATATTA+AGG - chr4_2:60674301-60674320 Msa0612240:CDS 35.0%
GACCCAGCTTCAAATATTAA+GGG - chr4_2:60674302-60674321 Msa0612240:CDS 35.0%
AGCTATGACGTTGTAACTTA+CGG - chr4_2:60674640-60674659 Msa0612240:intron 35.0%
! TCACTTGTTGAAGCAAGAAA+TGG + chr4_2:60674666-60674685 None:intergenic 35.0%
!! TTACCACAAAAAGTGTCAAC+CGG - chr4_2:60674777-60674796 Msa0612240:intron 35.0%
TGTCTTCCTAAACACTTCTT+TGG + chr4_2:60674803-60674822 None:intergenic 35.0%
TGATGTTACACCAACATCAT+TGG + chr4_2:60675080-60675099 None:intergenic 35.0%
CACTGTACTAAAGGTTCAAA+GGG + chr4_2:60675292-60675311 None:intergenic 35.0%
ATGTACATGAGGATAAAGCT+AGG + chr4_2:60675426-60675445 None:intergenic 35.0%
TTGGTACAAATTACGTTCTC+CGG + chr4_2:60675820-60675839 None:intergenic 35.0%
GCTGATGCTTCATTAACATT+TGG - chr4_2:60675858-60675877 Msa0612240:CDS 35.0%
TTGGTTCAATATTCGATCTC+CGG - chr4_2:60675877-60675896 Msa0612240:CDS 35.0%
GAATTGAAGGTGATCATGAT+TGG + chr4_2:60676039-60676058 None:intergenic 35.0%
TTCTCTAATCCTCATGATCA+TGG - chr4_2:60676162-60676181 Msa0612240:intron 35.0%
CCCTTAGTTAACATGATTCA+AGG - chr4_2:60676216-60676235 Msa0612240:intron 35.0%
CCCTTGAATCATGTTAACTA+AGG + chr4_2:60676220-60676239 None:intergenic 35.0%
!! ATTCAAGGGCATGGAAATTT+TGG - chr4_2:60676231-60676250 Msa0612240:intron 35.0%
AGTTCATCTCTAAATGTTGG+AGG - chr4_2:60676372-60676391 Msa0612240:intron 35.0%
!! GTTGGAGGTACCAAAAATAA+TGG - chr4_2:60676387-60676406 Msa0612240:intron 35.0%
TATGATATGCCTTCTCTGTA+GGG + chr4_2:60676865-60676884 None:intergenic 35.0%
TTATGATATGCCTTCTCTGT+AGG + chr4_2:60676866-60676885 None:intergenic 35.0%
!! ATCAATGTTGACTTTCTTGC+TGG + chr4_2:60677091-60677110 None:intergenic 35.0%
TCCAAACACATATATGGCAG+AGG + chr4_2:60673442-60673461 None:intergenic 40.0%
GGAGTCTCCAAACACATATA+TGG + chr4_2:60673448-60673467 None:intergenic 40.0%
CTTGCTAACAAAAGTCCTAC+TGG - chr4_2:60673540-60673559 Msa0612240:CDS 40.0%
CTAACAAAAGTCCTACTGGA+AGG - chr4_2:60673544-60673563 Msa0612240:CDS 40.0%
CTACTGGAAGGTTCTCAAAT+GGG - chr4_2:60673556-60673575 Msa0612240:CDS 40.0%
AGGTTCTCAAATGGGAAACT+TGG - chr4_2:60673564-60673583 Msa0612240:CDS 40.0%
TGAACTTGGTACTAGGTTAC+AGG - chr4_2:60673648-60673667 Msa0612240:CDS 40.0%
GAACTTGGTACTAGGTTACA+GGG - chr4_2:60673649-60673668 Msa0612240:CDS 40.0%
ATATTTAGGCCTGAAAGAGC+TGG - chr4_2:60673810-60673829 Msa0612240:intron 40.0%
AGTGATGAAGAGCTTATGAC+AGG - chr4_2:60673859-60673878 Msa0612240:intron 40.0%
AAATCATGAACACACACTGC+AGG + chr4_2:60673975-60673994 None:intergenic 40.0%
TTTGAGAACAGTGACATGCA+TGG + chr4_2:60674276-60674295 None:intergenic 40.0%
GGTCCCAATATCAAAGCAAA+TGG - chr4_2:60674471-60674490 Msa0612240:intron 40.0%
TTCCTAAACACTTCTTTGGC+CGG + chr4_2:60674799-60674818 None:intergenic 40.0%
! CATCATTGGTGCGACTTTTT+AGG + chr4_2:60675066-60675085 None:intergenic 40.0%
AAAAGTCGCACCAATGATGT+TGG - chr4_2:60675067-60675086 Msa0612240:intron 40.0%
AGTAGATGGTAGATCGATCT+TGG + chr4_2:60675197-60675216 None:intergenic 40.0%
GGCACTAGAATAGACTAAGT+TGG + chr4_2:60675271-60675290 None:intergenic 40.0%
GCACTGTACTAAAGGTTCAA+AGG + chr4_2:60675293-60675312 None:intergenic 40.0%
CATGAGGATAAAGCTAGGAA+AGG + chr4_2:60675421-60675440 None:intergenic 40.0%
! TTTTGTTGGACTACCTCCAA+TGG - chr4_2:60676005-60676024 Msa0612240:intron 40.0%
TTTGTTGGACTACCTCCAAT+GGG - chr4_2:60676006-60676025 Msa0612240:intron 40.0%
AAGCGCATTGTTGGAATTGA+AGG + chr4_2:60676052-60676071 None:intergenic 40.0%
ATCTTAGCACCATGATCATG+AGG + chr4_2:60676174-60676193 None:intergenic 40.0%
GTTAACATGATTCAAGGGCA+TGG - chr4_2:60676222-60676241 Msa0612240:intron 40.0%
TATTGTGGTAGGGTTTGATG+AGG - chr4_2:60676730-60676749 Msa0612240:intron 40.0%
TTCAATACACCCTACAGAGA+AGG - chr4_2:60676853-60676872 Msa0612240:intron 40.0%
GAGCAATGCATGTGTACCAA+AGG + chr4_2:60673349-60673368 None:intergenic 45.0%
GCCTCTGCCATATATGTGTT+TGG - chr4_2:60673438-60673457 Msa0612240:three_prime_UTR 45.0%
GCAAGATCTCTACCATAAGG+TGG + chr4_2:60673525-60673544 None:intergenic 45.0%
CCATTTGAGAACCTTCCAGT+AGG + chr4_2:60673558-60673577 None:intergenic 45.0%
CCTACTGGAAGGTTCTCAAA+TGG - chr4_2:60673555-60673574 Msa0612240:CDS 45.0%
AGAGATAGTACACCGAGAGT+TGG + chr4_2:60673928-60673947 None:intergenic 45.0%
GCATATGTTTGGTATCACGG+TGG - chr4_2:60673997-60674016 Msa0612240:intron 45.0%
AAAAGAAGCTCGAGTGGTTG+TGG + chr4_2:60674157-60674176 None:intergenic 45.0%
AAGAGGTTGGAGACTAAGCT+TGG - chr4_2:60674514-60674533 Msa0612240:intron 45.0%
!! AACCGGCCAAAGAAGTGTTT+AGG - chr4_2:60674794-60674813 Msa0612240:intron 45.0%
ATTGTGAAGGTAGCTGTGAG+TGG - chr4_2:60675453-60675472 Msa0612240:intron 45.0%
GTGGTAGCTCACACAACTAA+TGG - chr4_2:60675480-60675499 Msa0612240:intron 45.0%
! GATGACATGTACGCATTGAC+CGG + chr4_2:60675899-60675918 None:intergenic 45.0%
ATGATTGGCAAGCATCCCAT+TGG + chr4_2:60676024-60676043 None:intergenic 45.0%
! ACGTTCAAGAAGCGCATTGT+TGG + chr4_2:60676061-60676080 None:intergenic 45.0%
ATGCAATCGTATCCCTTGCT+TGG - chr4_2:60676260-60676279 Msa0612240:intron 45.0%
TGTGGCGATTTGCGATGAAT+AGG + chr4_2:60676889-60676908 None:intergenic 45.0%
!! TTAAAAAAAAATATAAATCT+TGG + chr4_2:60674745-60674764 None:intergenic 5.0%
! GTTGTTTCCTGGGTCTACTG+TGG + chr4_2:60673469-60673488 None:intergenic 50.0%
GGGTCAAACACTTACTGCTG+AGG - chr4_2:60673669-60673688 Msa0612240:CDS 50.0%
!! AGAGCTGGTGCCACCATATT+TGG - chr4_2:60673825-60673844 Msa0612240:intron 50.0%
!!! GGAGTTAGTTTTGCCTCTGC+TGG - chr4_2:60673880-60673899 Msa0612240:intron 50.0%
!!! AGTTTTGCCTCTGCTGGTTC+TGG - chr4_2:60673886-60673905 Msa0612240:intron 50.0%
GTCAAAACCAGAACCAGCAG+AGG + chr4_2:60673896-60673915 None:intergenic 50.0%
GGTTGGAGACTAAGCTTGGT+AGG - chr4_2:60674518-60674537 Msa0612240:intron 50.0%
!! TGGCCGGTTGACACTTTTTG+TGG + chr4_2:60674783-60674802 None:intergenic 50.0%
ATTGGCAAGCATCCCATTGG+AGG + chr4_2:60676021-60676040 None:intergenic 50.0%
TGTGGCAAGACAGCACAACA+TGG - chr4_2:60676104-60676123 Msa0612240:intron 50.0%
! GGGTTTGATGAGGTTGATCG+TGG - chr4_2:60676740-60676759 Msa0612240:intron 50.0%
!! TGACGAGGGCATCAAGAATG+TGG + chr4_2:60676907-60676926 None:intergenic 50.0%
GGAATCCTAGTCGTTGACGA+GGG + chr4_2:60676921-60676940 None:intergenic 50.0%
AGGAATCCTAGTCGTTGACG+AGG + chr4_2:60676922-60676941 None:intergenic 50.0%
ACTGCTGAGGTGACACGTCA+CGG - chr4_2:60673682-60673701 Msa0612240:CDS 55.0%
ATGGTGGCACCAGCTCTTTC+AGG + chr4_2:60673822-60673841 None:intergenic 55.0%
GACCCACTCACACCAACTCT+CGG - chr4_2:60673913-60673932 Msa0612240:intron 55.0%
!! CACCGAGAGTTGGTGTGAGT+GGG + chr4_2:60673918-60673937 None:intergenic 55.0%
!! ACACCGAGAGTTGGTGTGAG+TGG + chr4_2:60673919-60673938 None:intergenic 55.0%
GGTAGCTGTGAGTGGTTGTG+TGG - chr4_2:60675461-60675480 Msa0612240:intron 55.0%
! GAGGTTGATCGTGGCTGTTG+TGG - chr4_2:60676749-60676768 Msa0612240:intron 55.0%
GATCGTGGCTGTTGTGGAAG+TGG - chr4_2:60676755-60676774 Msa0612240:intron 55.0%
TGATGCCCTCGTCAACGACT+AGG - chr4_2:60676913-60676932 Msa0612240:CDS 55.0%
GGAGACTCCACAGTAGACCC+AGG - chr4_2:60673459-60673478 Msa0612240:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 60673286 60677175 60673286 ID=Msa0612240;Name=Msa0612240
chr4_2 mRNA 60673286 60677175 60673286 ID=Msa0612240-mRNA-1;Parent=Msa0612240;Name=Msa0612240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=53|1|1|1|1|1|5|241|366
chr4_2 exon 60673286 60673720 60673286 ID=Msa0612240-mRNA-1:exon:16375;Parent=Msa0612240-mRNA-1
chr4_2 exon 60674209 60674488 60674209 ID=Msa0612240-mRNA-1:exon:16374;Parent=Msa0612240-mRNA-1
chr4_2 exon 60675762 60675995 60675762 ID=Msa0612240-mRNA-1:exon:16373;Parent=Msa0612240-mRNA-1
chr4_2 exon 60676525 60676655 60676525 ID=Msa0612240-mRNA-1:exon:16372;Parent=Msa0612240-mRNA-1
chr4_2 exon 60676861 60677175 60676861 ID=Msa0612240-mRNA-1:exon:16371;Parent=Msa0612240-mRNA-1
chr4_2 five_prime_UTR 60677123 60677175 60677123 ID=Msa0612240-mRNA-1:five_prime_utr;Parent=Msa0612240-mRNA-1
chr4_2 CDS 60676861 60677122 60676861 ID=Msa0612240-mRNA-1:cds;Parent=Msa0612240-mRNA-1
chr4_2 CDS 60676525 60676655 60676525 ID=Msa0612240-mRNA-1:cds;Parent=Msa0612240-mRNA-1
chr4_2 CDS 60675762 60675995 60675762 ID=Msa0612240-mRNA-1:cds;Parent=Msa0612240-mRNA-1
chr4_2 CDS 60674209 60674488 60674209 ID=Msa0612240-mRNA-1:cds;Parent=Msa0612240-mRNA-1
chr4_2 CDS 60673527 60673720 60673527 ID=Msa0612240-mRNA-1:cds;Parent=Msa0612240-mRNA-1
chr4_2 three_prime_UTR 60673286 60673526 60673286 ID=Msa0612240-mRNA-1:three_prime_utr;Parent=Msa0612240-mRNA-1
Gene Sequence

>Msa0612240

ATGGAAACCTTTGGTACACATGCATTGCTCTCTATTGTGCACATTTTCATGCTTAGTTTGTTGTGTTTTATGGTTAGAATTGAAGGTTCAAAGAGTAAAGCCTCTGCCATATATGTGTTTGGAGACTCCACAGTAGACCCAGGAAACAACAACTACATAAACACAGCTTTCAAGAGTGATTTTCCACCTTATGGTAGAGATCTTGCTAACAAAAGTCCTACTGGAAGGTTCTCAAATGGGAAACTTGGCACTGATTTTATAGCTTCATATTTAGGCCTGAAAGAGCTGGTGCCACCATATTTGGATCCAAATCTTAGTGATGAAGAGCTTATGACAGGAGTTAGTTTTGCCTCTGCTGGTTCTGGTTTTGACCCACTCACACCAACTCTCGGTAATGTGGTCCCAATATCAAAGCAAATGGAATATTTCAAACAATACAAAAAGAGGTTGGAGACTAAGCTTGGTAGGCAAAGAACTGAAAATCATATGAACAACGCATTATTTTTCATAAGTGCTGGTACAAATGACTTCGTTATTAATTATTTTACGGTACCAATACGAAGAAAAAGCTATGACGTTGTAACTTACGGCCATTTCTTGCTTCAACAAGTGAAAGATTTCATACAGAATTTATGGACAGAAGGTGCTAGAAAAATTGCTTTTGTTGGACTACCTCCAATGGGATGCTTGCCAATCATGATCACCTTCAATTCCAACAATGCGCTTCTTGAACGTAGTTGTGTAGATAAATATTCTGTTGTGGCAAGACAGCACAACATGGTGCTTCAACATGAATTGTTCTTAATGCAACTCAATTTCTCTAATCCTCATGATCATGGTGCTAAGATCTCTTACATTGACATATATGAACCCTTAGTTAACATGATTCAAGGGCATGGAAATTTTGGGTTTGATGAGGTTGATCGTGGCTGTTGTGGAAGTGGTTTCATTGAAGCAACATTTATGTGTAATCGTGTTTCACATGTATGTTCTGATCCGTCAAAATATGTCTTTTGGGATTCAATACACCCTACAGAGAAGGCATATCATAACCTATTCATCGCAAATCGCCACATTCTTGATGCCCTCGTCAACGACTAG
Protein sequence

>Msa0612240

METFGTHALLSIVHIFMLSLLCFMVRIEGSKSKASAIYVFGDSTVDPGNNNYINTAFKSDFPPYGRDLANKSPTGRFSNGKLGTDFIASYLGLKELVPPYLDPNLSDEELMTGVSFASAGSGFDPLTPTLGNVVPISKQMEYFKQYKKRLETKLGRQRTENHMNNALFFISAGTNDFVINYFTVPIRRKSYDVVTYGHFLLQQVKDFIQNLWTEGARKIAFVGLPPMGCLPIMITFNSNNALLERSCVDKYSVVARQHNMVLQHELFLMQLNFSNPHDHGAKISYIDIYEPLVNMIQGHGNFGFDEVDRGCCGSGFIEATFMCNRVSHVCSDPSKYVFWDSIHPTEKAYHNLFIANRHILDALVND*