Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557350 | QDX01714.1 | 99.373 | 319 | 2 | 0 | 1 | 319 | 1 | 319 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557350 | sp|F4HY61|NAC10_ARATH | 57.229 | 332 | 98 | 9 | 1 | 314 | 1 | 306 | 8.22e-119 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557350 | A0A6B7JET0 | 99.373 | 319 | 2 | 0 | 1 | 319 | 1 | 319 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0557350 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0557350 | Msa0695240 | 0.897057 | 2.032183e-76 | -8.615850e-47 |
| Msa0557350 | Msa0945200 | 0.812060 | 5.125683e-51 | -8.615850e-47 |
| Msa0557350 | Msa1438250 | 0.800397 | 1.469385e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557350 | MtrunA17_Chr4g0046431 | 95.925 | 319 | 12 | 1 | 1 | 319 | 1 | 318 | 0.0 | 637 |
| Msa0557350 | MtrunA17_Chr8g0367761 | 98.206 | 223 | 4 | 0 | 1 | 223 | 1 | 223 | 3.60e-166 | 462 |
| Msa0557350 | MtrunA17_Chr2g0282871 | 61.231 | 325 | 92 | 8 | 1 | 314 | 1 | 302 | 1.42e-135 | 387 |
| Msa0557350 | MtrunA17_Chr4g0040541 | 65.568 | 273 | 83 | 6 | 29 | 295 | 10 | 277 | 6.47e-123 | 353 |
| Msa0557350 | MtrunA17_Chr2g0324961 | 66.078 | 283 | 84 | 8 | 27 | 305 | 10 | 284 | 1.03e-118 | 343 |
| Msa0557350 | MtrunA17_Chr8g0389661 | 70.588 | 204 | 47 | 5 | 47 | 241 | 30 | 229 | 3.16e-95 | 290 |
| Msa0557350 | MtrunA17_Chr5g0422431 | 58.081 | 198 | 80 | 2 | 44 | 241 | 36 | 230 | 3.78e-75 | 237 |
| Msa0557350 | MtrunA17_Chr1g0198751 | 47.619 | 252 | 124 | 4 | 44 | 295 | 36 | 279 | 5.01e-72 | 230 |
| Msa0557350 | MtrunA17_Chr7g0227071 | 55.978 | 184 | 74 | 3 | 47 | 227 | 36 | 215 | 8.59e-65 | 212 |
| Msa0557350 | MtrunA17_Chr1g0198741 | 52.846 | 123 | 58 | 0 | 123 | 245 | 7 | 129 | 1.07e-37 | 135 |
| Msa0557350 | MtrunA17_Chr6g0484441 | 30.159 | 189 | 109 | 6 | 68 | 249 | 5 | 177 | 1.41e-15 | 76.3 |
| Msa0557350 | MtrunA17_Chr6g0461661 | 31.481 | 216 | 102 | 11 | 68 | 267 | 18 | 203 | 5.21e-15 | 75.1 |
| Msa0557350 | MtrunA17_Chr3g0091921 | 30.952 | 168 | 93 | 5 | 68 | 228 | 16 | 167 | 1.37e-14 | 73.2 |
| Msa0557350 | MtrunA17_Chr6g0453451 | 31.690 | 142 | 80 | 4 | 68 | 208 | 20 | 145 | 1.84e-14 | 72.8 |
| Msa0557350 | MtrunA17_Chr2g0318101 | 29.012 | 162 | 96 | 5 | 54 | 212 | 1 | 146 | 2.15e-12 | 67.0 |
| Msa0557350 | MtrunA17_Chr2g0316971 | 30.994 | 171 | 91 | 7 | 68 | 228 | 23 | 176 | 3.98e-12 | 66.2 |
| Msa0557350 | MtrunA17_Chr3g0124761 | 31.034 | 145 | 78 | 6 | 68 | 209 | 7 | 132 | 3.22e-11 | 63.2 |
| Msa0557350 | MtrunA17_Chr7g0214071 | 28.571 | 175 | 98 | 9 | 68 | 237 | 15 | 167 | 3.77e-11 | 62.4 |
| Msa0557350 | MtrunA17_Chr8g0384721 | 29.861 | 144 | 83 | 5 | 68 | 210 | 7 | 133 | 8.25e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557350 | AT1G28470.1 | 57.229 | 332 | 98 | 9 | 1 | 314 | 1 | 306 | 8.36e-120 | 347 |
| Msa0557350 | AT4G28500.1 | 70.464 | 237 | 60 | 5 | 1 | 236 | 1 | 228 | 3.94e-118 | 343 |
| Msa0557350 | AT4G29230.3 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 1.63e-98 | 297 |
| Msa0557350 | AT4G29230.1 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 5.15e-98 | 298 |
| Msa0557350 | AT4G29230.2 | 70.000 | 200 | 47 | 2 | 47 | 238 | 31 | 225 | 2.27e-97 | 296 |
| Msa0557350 | AT5G56620.2 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 8.27e-89 | 271 |
| Msa0557350 | AT5G56620.3 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 1.05e-88 | 271 |
| Msa0557350 | AT5G56620.1 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 1.23e-88 | 270 |
| Msa0557350 | AT1G25580.1 | 58.602 | 186 | 68 | 4 | 47 | 232 | 39 | 215 | 3.83e-69 | 222 |
| Msa0557350 | AT5G14490.2 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 2.03e-55 | 182 |
| Msa0557350 | AT5G14490.1 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 2.33e-55 | 184 |
| Msa0557350 | AT5G14490.4 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 2.64e-55 | 183 |
| Msa0557350 | AT5G14490.3 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 3.40e-55 | 184 |
| Msa0557350 | AT3G01600.1 | 48.387 | 186 | 92 | 3 | 45 | 229 | 34 | 216 | 5.88e-52 | 175 |
| Msa0557350 | AT3G04060.1 | 33.149 | 181 | 97 | 6 | 58 | 230 | 10 | 174 | 4.21e-19 | 87.0 |
| Msa0557350 | AT5G18270.2 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 1.41e-16 | 79.7 |
| Msa0557350 | AT5G18270.1 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 2.43e-16 | 79.0 |
| Msa0557350 | AT3G18400.1 | 31.481 | 162 | 91 | 5 | 68 | 225 | 5 | 150 | 4.33e-15 | 75.1 |
| Msa0557350 | AT5G07680.2 | 32.143 | 168 | 91 | 5 | 68 | 228 | 3 | 154 | 5.66e-15 | 74.7 |
| Msa0557350 | AT5G07680.1 | 32.143 | 168 | 91 | 5 | 68 | 228 | 17 | 168 | 6.87e-15 | 74.7 |
| Msa0557350 | AT5G61430.1 | 33.099 | 142 | 78 | 4 | 68 | 208 | 16 | 141 | 4.46e-14 | 72.4 |
| Msa0557350 | AT1G33060.2 | 30.539 | 167 | 93 | 7 | 55 | 217 | 11 | 158 | 4.89e-13 | 70.1 |
| Msa0557350 | AT1G33060.1 | 30.539 | 167 | 93 | 7 | 55 | 217 | 11 | 158 | 5.01e-13 | 70.1 |
| Msa0557350 | AT1G01720.1 | 30.201 | 149 | 86 | 5 | 62 | 209 | 1 | 132 | 2.15e-12 | 67.0 |
| Msa0557350 | AT1G76420.1 | 29.630 | 189 | 103 | 8 | 67 | 247 | 21 | 187 | 6.11e-12 | 65.9 |
| Msa0557350 | AT4G35580.3 | 30.000 | 150 | 86 | 6 | 61 | 207 | 2 | 135 | 1.17e-11 | 65.9 |
| Msa0557350 | AT4G35580.2 | 30.000 | 150 | 86 | 6 | 61 | 207 | 2 | 135 | 1.22e-11 | 65.9 |
| Msa0557350 | AT4G35580.1 | 30.000 | 150 | 86 | 6 | 61 | 207 | 2 | 135 | 1.56e-11 | 65.5 |
| Msa0557350 | AT1G02230.1 | 32.432 | 148 | 77 | 6 | 69 | 210 | 4 | 134 | 8.75e-11 | 62.8 |
Find 103 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAATGTTGGTCATAATT+TGG | 0.095457 | 4_1:-55660012 | Msa0557350:CDS |
| TAACCAAGTTTGGAATAAAT+TGG | 0.141092 | 4_1:+55659976 | None:intergenic |
| AATAGTAATAACAATATTAT+TGG | 0.207457 | 4_1:+55659779 | None:intergenic |
| TGCAGTATCCTTGATAATAT+TGG | 0.229118 | 4_1:+55660130 | None:intergenic |
| ATATATTTATTCTATATATA+TGG | 0.248182 | 4_1:-55659713 | Msa0557350:three_prime_UTR |
| GACAATGTTGGTCATAATTT+GGG | 0.268667 | 4_1:-55660011 | Msa0557350:CDS |
| CATGTCATGATCTCTTTAAT+TGG | 0.278177 | 4_1:+55662996 | None:intergenic |
| TTCCCTGAATCACCTCTTAT+AGG | 0.278891 | 4_1:+55663224 | None:intergenic |
| CCTGTTGTGTATGCTTTAGA+TGG | 0.308469 | 4_1:+55660434 | None:intergenic |
| CAATGAACTGCCGGGTTTAC+CGG | 0.310248 | 4_1:-55662597 | Msa0557350:CDS |
| GTACTTTCATTGCTAGTTCC+AGG | 0.310383 | 4_1:+55662915 | None:intergenic |
| GATACTGCAAGTTATGAAAA+TGG | 0.315715 | 4_1:-55660116 | Msa0557350:CDS |
| GACCACATGAGGGGCAAGTT+AGG | 0.316155 | 4_1:+55662850 | None:intergenic |
| ATCAATAAGAGGATGAAGTT+TGG | 0.318163 | 4_1:+55662502 | None:intergenic |
| TCACCTTGCATAACCAAGTT+TGG | 0.330649 | 4_1:+55659966 | None:intergenic |
| GGTAGATTATTAATGTATAA+TGG | 0.333418 | 4_1:-55659864 | Msa0557350:three_prime_UTR |
| TTCCATTCTCTTCCTATAAG+AGG | 0.351549 | 4_1:-55663236 | Msa0557350:intron |
| GAGACAAGATGGCACAAAAC+AGG | 0.362354 | 4_1:-55660368 | Msa0557350:CDS |
| AACCAAGTTTGGAATAAATT+GGG | 0.365436 | 4_1:+55659977 | None:intergenic |
| TCAAGAGATACTTCAGCATT+TGG | 0.367315 | 4_1:-55662549 | Msa0557350:CDS |
| AAAATTAAAATACCTGATCT+TGG | 0.368647 | 4_1:+55662814 | None:intergenic |
| CTAGTCCTCTACACCAACTA+TGG | 0.382144 | 4_1:-55660293 | Msa0557350:CDS |
| AATCATATAGAATAAGTGTT+AGG | 0.386827 | 4_1:-55663264 | Msa0557350:five_prime_UTR |
| AAGGAATGAGGCAAAGGGAG+AGG | 0.389085 | 4_1:+55663368 | None:intergenic |
| GAGGAGCTTCATTATCATCT+TGG | 0.390234 | 4_1:+55660069 | None:intergenic |
| TATAGCTACATAGATGTTGA+TGG | 0.397210 | 4_1:-55659835 | Msa0557350:three_prime_UTR |
| ATGACTCAGATGATCAAGAT+AGG | 0.398851 | 4_1:-55662968 | Msa0557350:CDS |
| ATCCCAATTTATTCCAAACT+TGG | 0.402709 | 4_1:-55659979 | Msa0557350:CDS |
| ATCCATTGCCAATCGAATAA+AGG | 0.406204 | 4_1:+55659935 | None:intergenic |
| TCAATAAGAGGATGAAGTTT+GGG | 0.408567 | 4_1:+55662503 | None:intergenic |
| AGGAATGAGGCAAAGGGAGA+GGG | 0.412221 | 4_1:+55663369 | None:intergenic |
| CACATTGTCGAGGCTGTGTC+TGG | 0.424638 | 4_1:+55660165 | None:intergenic |
| ATAACATCTACTGTTATTCC+TGG | 0.425471 | 4_1:-55662933 | Msa0557350:CDS |
| CCGTTCTCTCCTTCAAGTGT+TGG | 0.428976 | 4_1:+55662470 | None:intergenic |
| AGGAGAAGGAATGAGGCAAA+GGG | 0.431181 | 4_1:+55663363 | None:intergenic |
| GCAATGGATGCAAACAAAGC+TGG | 0.432392 | 4_1:-55659921 | Msa0557350:CDS |
| TGGCTCTTCCTTTATTCGAT+TGG | 0.446932 | 4_1:-55659943 | Msa0557350:CDS |
| TTCATAAATTATGACAATGT+TGG | 0.448352 | 4_1:-55660023 | Msa0557350:CDS |
| TGAAGTATCTCTTGATCATT+CGG | 0.452486 | 4_1:+55662557 | None:intergenic |
| GAGGAGAAGGAATGAGGCAA+AGG | 0.455107 | 4_1:+55663362 | None:intergenic |
| TTCCTTTATTCGATTGGCAA+TGG | 0.456787 | 4_1:-55659937 | Msa0557350:CDS |
| GGAATGAGGCAAAGGGAGAG+GGG | 0.461441 | 4_1:+55663370 | None:intergenic |
| ACCACATGAGGGGCAAGTTA+GGG | 0.470434 | 4_1:+55662851 | None:intergenic |
| CCATCTAAAGCATACACAAC+AGG | 0.476509 | 4_1:-55660434 | Msa0557350:CDS |
| TAACATTGAATTCCAAGATC+AGG | 0.478563 | 4_1:-55662826 | Msa0557350:intron |
| GAGAGAGAGGAGAAGGAATG+AGG | 0.479991 | 4_1:+55663356 | None:intergenic |
| CATAATTTATGAAATGAGAA+TGG | 0.480115 | 4_1:+55660033 | None:intergenic |
| GGGTGGAATCAATGAACTGC+CGG | 0.482156 | 4_1:-55662606 | Msa0557350:CDS |
| GTATTGATGCATCACCCAAT+TGG | 0.485290 | 4_1:+55660247 | None:intergenic |
| AGAAGCCAGAGAAAACCAAT+TGG | 0.487035 | 4_1:-55660262 | Msa0557350:CDS |
| TGATAATGAAGCTCCTCCTA+TGG | 0.487564 | 4_1:-55660063 | Msa0557350:CDS |
| GCCTTCCATAGTTGGTGTAG+AGG | 0.488969 | 4_1:+55660288 | None:intergenic |
| TTTATTGATGGTGTTATGAA+AGG | 0.492139 | 4_1:-55660329 | Msa0557350:CDS |
| GAGTTCATACCAACACTTGA+AGG | 0.498892 | 4_1:-55662479 | Msa0557350:CDS |
| ACTTCAGCATTTGGAAGCAA+AGG | 0.499727 | 4_1:-55662540 | Msa0557350:CDS |
| GCAAGTTAGGGTTCGAACTT+CGG | 0.505146 | 4_1:+55662863 | None:intergenic |
| CACCTCTTATAGGAAGAGAA+TGG | 0.516751 | 4_1:+55663234 | None:intergenic |
| TGGTGAAATAGTTGTTTCAA+AGG | 0.519548 | 4_1:-55660195 | Msa0557350:CDS |
| TGACTCAGATGATCAAGATA+GGG | 0.524395 | 4_1:-55662967 | Msa0557350:CDS |
| AATGGACTGATGATAAATCA+AGG | 0.525858 | 4_1:-55660098 | Msa0557350:CDS |
| AAATAATTCCAATATTATCA+AGG | 0.530116 | 4_1:-55660138 | Msa0557350:CDS |
| GGTATGAACTCATCAATAAG+AGG | 0.531878 | 4_1:+55662491 | None:intergenic |
| TTCACTCCTGCCGGTAAACC+CGG | 0.532548 | 4_1:+55662587 | None:intergenic |
| AGATCCGGCACTTCTTTCAC+AGG | 0.536068 | 4_1:-55660457 | Msa0557350:CDS |
| ATTCCAAACTTGGTTATGCA+AGG | 0.537547 | 4_1:-55659969 | Msa0557350:CDS |
| GGATCAAACTTCACTCCTGC+CGG | 0.537711 | 4_1:+55662578 | None:intergenic |
| TCTCTTCTTCATTACTACCA+AGG | 0.544705 | 4_1:+55660222 | None:intergenic |
| AGTAATGAAGAAGAGAAAGA+TGG | 0.544775 | 4_1:-55660215 | Msa0557350:CDS |
| GAAGCCAGAGAAAACCAATT+GGG | 0.545727 | 4_1:-55660261 | Msa0557350:CDS |
| GTTAGGGTTCGAACTTCGGT+TGG | 0.551703 | 4_1:+55662867 | None:intergenic |
| GTCATAAAGAAAATAAATGT+GGG | 0.553867 | 4_1:+55663398 | None:intergenic |
| GAACTGCCGGGTTTACCGGC+AGG | 0.555398 | 4_1:-55662593 | Msa0557350:CDS |
| ATATTTGTTGTAGGGTGGTG+TGG | 0.556762 | 4_1:-55663064 | Msa0557350:intron |
| AAGGTTCAAACTGATGAAGA+AGG | 0.557893 | 4_1:-55660395 | Msa0557350:CDS |
| ATTTATATTAGAGAAATTTG+AGG | 0.557939 | 4_1:-55659690 | Msa0557350:three_prime_UTR |
| AGTCATAAAGAAAATAAATG+TGG | 0.560838 | 4_1:+55663397 | None:intergenic |
| AAGAAGGAAGTGAGACAAGA+TGG | 0.561201 | 4_1:-55660379 | Msa0557350:CDS |
| ATGGCCTGTGAAAGAAGTGC+CGG | 0.564511 | 4_1:+55660453 | None:intergenic |
| TTCAATGTTATGACCACATG+AGG | 0.566477 | 4_1:+55662839 | None:intergenic |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 4_1:-55660414 | Msa0557350:CDS |
| AAATAAATGTGGGACTCAAG+TGG | 0.568834 | 4_1:+55663408 | None:intergenic |
| TGAGAATGGTAGTAATCCAT+AGG | 0.575219 | 4_1:+55660047 | None:intergenic |
| CAATGGATGCAAACAAAGCT+GGG | 0.577780 | 4_1:-55659920 | Msa0557350:CDS |
| TCCTCTACACCAACTATGGA+AGG | 0.579155 | 4_1:-55660289 | Msa0557350:CDS |
| AACTTGGTTATGCAAGGTGA+TGG | 0.581693 | 4_1:-55659963 | Msa0557350:CDS |
| AATAAATGTGGGACTCAAGT+GGG | 0.581931 | 4_1:+55663409 | None:intergenic |
| GGTGGAATCAATGAACTGCC+GGG | 0.589992 | 4_1:-55662605 | Msa0557350:CDS |
| ACACATCCAGAAAAGCTACC+AGG | 0.603148 | 4_1:-55662437 | Msa0557350:intron |
| ACCCTAACTTGCCCCTCATG+TGG | 0.615492 | 4_1:-55662852 | Msa0557350:CDS |
| AGACAAGATGGCACAAAACA+GGG | 0.622480 | 4_1:-55660367 | Msa0557350:CDS |
| CTTCTTCATTACTACCAAGG+TGG | 0.625108 | 4_1:+55660225 | None:intergenic |
| AAGCATACACAACAGGAACA+AGG | 0.626885 | 4_1:-55660427 | Msa0557350:CDS |
| TTATTTCCACCACATTGTCG+AGG | 0.627002 | 4_1:+55660155 | None:intergenic |
| TATATGATTGAAGTGCAAAG+AGG | 0.627327 | 4_1:+55663278 | None:intergenic |
| TCAATGTTATGACCACATGA+GGG | 0.632214 | 4_1:+55662840 | None:intergenic |
| CCAACACTTGAAGGAGAGAA+CGG | 0.633139 | 4_1:-55662470 | Msa0557350:CDS |
| GACTCAGATGATCAAGATAG+GGG | 0.637363 | 4_1:-55662966 | Msa0557350:CDS |
| GAATGGTAGTAATCCATAGG+AGG | 0.642196 | 4_1:+55660050 | None:intergenic |
| ACACAGCCTCGACAATGTGG+TGG | 0.657333 | 4_1:-55660161 | Msa0557350:CDS |
| CAATGTTATGACCACATGAG+GGG | 0.657544 | 4_1:+55662841 | None:intergenic |
| GTGATGCATCAATACCACCT+TGG | 0.670736 | 4_1:-55660239 | Msa0557350:CDS |
| CAGACACAGCCTCGACAATG+TGG | 0.682956 | 4_1:-55660164 | Msa0557350:CDS |
| CAATTAAAGAGATCATGACA+TGG | 0.684251 | 4_1:-55662995 | Msa0557350:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTGTTTTTTTTTTTTT+TGG | - | chr4_1:55659976-55659995 | Msa0557350:CDS | 10.0% |
| !!! | TATAATATATACTCTTTTTT+TGG | - | chr4_1:55661064-55661083 | Msa0557350:intron | 10.0% |
| !! | AAATTTATTTCCAAATAAAA+TGG | - | chr4_1:55662382-55662401 | Msa0557350:intron | 10.0% |
| !! | AATAGTAATAACAATATTAT+TGG | + | chr4_1:55663317-55663336 | None:intergenic | 10.0% |
| !! | AGGAAAAAATAAAAGAAAAA+GGG | + | chr4_1:55659931-55659950 | None:intergenic | 15.0% |
| !! | AAGGAAAAAATAAAAGAAAA+AGG | + | chr4_1:55659932-55659951 | None:intergenic | 15.0% |
| !!! | TTTTGGATTATTACTAATTT+TGG | - | chr4_1:55659993-55660012 | Msa0557350:CDS | 15.0% |
| !!! | TTTTTTATAACACTTTTTGA+AGG | - | chr4_1:55660935-55660954 | Msa0557350:intron | 15.0% |
| !!! | AAAAAAATAGCTGTATTTTT+TGG | + | chr4_1:55661011-55661030 | None:intergenic | 15.0% |
| !! | TTGATTATATTTAACTCATA+AGG | - | chr4_1:55661617-55661636 | Msa0557350:intron | 15.0% |
| !!! | CTAATTTTTTTTTTTGGATT+CGG | + | chr4_1:55662133-55662152 | None:intergenic | 15.0% |
| !!! | TTGTCTCTAATTTTTTTTTT+TGG | + | chr4_1:55662139-55662158 | None:intergenic | 15.0% |
| !! | AAATAATTCCAATATTATCA+AGG | - | chr4_1:55662955-55662974 | Msa0557350:CDS | 15.0% |
| !! | ATTTATATTAGAGAAATTTG+AGG | - | chr4_1:55663403-55663422 | Msa0557350:five_prime_UTR | 15.0% |
| !! | GTCATAAAGAAAATAAATGT+GGG | + | chr4_1:55659698-55659717 | None:intergenic | 20.0% |
| !! | AGTCATAAAGAAAATAAATG+TGG | + | chr4_1:55659699-55659718 | None:intergenic | 20.0% |
| !! | AATCATATAGAATAAGTGTT+AGG | - | chr4_1:55659829-55659848 | Msa0557350:three_prime_UTR | 20.0% |
| !!! | TGTTTTTATGTTGATAGAAT+TGG | - | chr4_1:55660068-55660087 | Msa0557350:CDS | 20.0% |
| !! | AAAATTAAAATACCTGATCT+TGG | + | chr4_1:55660282-55660301 | None:intergenic | 20.0% |
| !! | TAAAAAAACACAAACACTAA+GGG | + | chr4_1:55660326-55660345 | None:intergenic | 20.0% |
| !! | TTAAAAAAACACAAACACTA+AGG | + | chr4_1:55660327-55660346 | None:intergenic | 20.0% |
| !! | ATACAAGGTATATATTTCAT+AGG | + | chr4_1:55661212-55661231 | None:intergenic | 20.0% |
| !! | AATTTATTTAATAAAGACCC+TGG | - | chr4_1:55661251-55661270 | Msa0557350:intron | 20.0% |
| !! | TATACACTATTACTTAATCA+TGG | - | chr4_1:55661504-55661523 | Msa0557350:intron | 20.0% |
| !! | ATACACTATTACTTAATCAT+GGG | - | chr4_1:55661505-55661524 | Msa0557350:intron | 20.0% |
| !!! | AGTCATCTTTAATTTTTGTA+AGG | + | chr4_1:55661681-55661700 | None:intergenic | 20.0% |
| !!! | TAATACATGACCATTTTATT+TGG | + | chr4_1:55662395-55662414 | None:intergenic | 20.0% |
| !!! | TACTATTTAACAACTTGTTT+TGG | - | chr4_1:55662413-55662432 | Msa0557350:intron | 20.0% |
| !!! | ACTATTTAACAACTTGTTTT+GGG | - | chr4_1:55662414-55662433 | Msa0557350:intron | 20.0% |
| !! | CATAATTTATGAAATGAGAA+TGG | + | chr4_1:55663063-55663082 | None:intergenic | 20.0% |
| !! | TTCATAAATTATGACAATGT+TGG | - | chr4_1:55663070-55663089 | Msa0557350:intron | 20.0% |
| !! | GGTAGATTATTAATGTATAA+TGG | - | chr4_1:55663229-55663248 | Msa0557350:intron | 20.0% |
| !!! | AATCTGTGATATTTGTTGTA+GGG | - | chr4_1:55660021-55660040 | Msa0557350:CDS | 25.0% |
| ! | AGTAAAATGAAATTAAGACC+TGG | + | chr4_1:55660677-55660696 | None:intergenic | 25.0% |
| !!! | TTACTTTCTAACTTTTTCTC+TGG | - | chr4_1:55660692-55660711 | Msa0557350:intron | 25.0% |
| ! | TAGTAGTATATGCATAAAAC+AGG | + | chr4_1:55660746-55660765 | None:intergenic | 25.0% |
| !! | TGTTTTATGCATATACTACT+AGG | - | chr4_1:55660745-55660764 | Msa0557350:intron | 25.0% |
| !! | GTTTTATGCATATACTACTA+GGG | - | chr4_1:55660746-55660765 | Msa0557350:intron | 25.0% |
| !!! | ATAACACTTTTTGAAGGAAA+CGG | - | chr4_1:55660941-55660960 | Msa0557350:intron | 25.0% |
| ! | AGCTAATTATTTCACATACA+AGG | + | chr4_1:55661227-55661246 | None:intergenic | 25.0% |
| ! | TGGTAAAATATCTTATTCCA+GGG | + | chr4_1:55661271-55661290 | None:intergenic | 25.0% |
| !! | TAAGATATTTTACCAGTCAA+AGG | - | chr4_1:55661276-55661295 | Msa0557350:intron | 25.0% |
| ! | AATTGTGTGTGATTATTCTT+TGG | - | chr4_1:55661358-55661377 | Msa0557350:intron | 25.0% |
| !! | TGTATCATGTGTTAATTTTC+AGG | + | chr4_1:55661547-55661566 | None:intergenic | 25.0% |
| ! | TGACATGTGATTAATGTTTA+GGG | + | chr4_1:55661854-55661873 | None:intergenic | 25.0% |
| ! | TTGACATGTGATTAATGTTT+AGG | + | chr4_1:55661855-55661874 | None:intergenic | 25.0% |
| ! | AACTGCACATAATTATCAAA+AGG | - | chr4_1:55661885-55661904 | Msa0557350:intron | 25.0% |
| ! | ACTGCACATAATTATCAAAA+GGG | - | chr4_1:55661886-55661905 | Msa0557350:intron | 25.0% |
| ! | AAAAAATTAATTGCATCTCC+AGG | + | chr4_1:55661939-55661958 | None:intergenic | 25.0% |
| ! | AAGTAACAGATTGACATAAA+TGG | + | chr4_1:55661995-55662014 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGATTCGGAT+CGG | + | chr4_1:55662128-55662147 | None:intergenic | 25.0% |
| !! | CATATGCCCTTTTAATATTT+TGG | + | chr4_1:55662214-55662233 | None:intergenic | 25.0% |
| ! | GAGTTTAGATCTAAACAAAT+TGG | - | chr4_1:55662511-55662530 | Msa0557350:CDS | 25.0% |
| ! | TGGTTTAGTCTAATGTTATT+AGG | - | chr4_1:55662531-55662550 | Msa0557350:CDS | 25.0% |
| ! | GGTTTAGTCTAATGTTATTA+GGG | - | chr4_1:55662532-55662551 | Msa0557350:CDS | 25.0% |
| ! | ATAACACCATCAATAAAAAC+TGG | + | chr4_1:55662761-55662780 | None:intergenic | 25.0% |
| !!! | TTTATTGATGGTGTTATGAA+AGG | - | chr4_1:55662764-55662783 | Msa0557350:intron | 25.0% |
| !! | AACCAAGTTTGGAATAAATT+GGG | + | chr4_1:55663119-55663138 | None:intergenic | 25.0% |
| !! | TAACCAAGTTTGGAATAAAT+TGG | + | chr4_1:55663120-55663139 | None:intergenic | 25.0% |
| TATATGATTGAAGTGCAAAG+AGG | + | chr4_1:55659818-55659837 | None:intergenic | 30.0% | |
| !! | GAATCTGTGATATTTGTTGT+AGG | - | chr4_1:55660020-55660039 | Msa0557350:CDS | 30.0% |
| CATGTCATGATCTCTTTAAT+TGG | + | chr4_1:55660100-55660119 | None:intergenic | 30.0% | |
| CAATTAAAGAGATCATGACA+TGG | - | chr4_1:55660098-55660117 | Msa0557350:CDS | 30.0% | |
| ATAACATCTACTGTTATTCC+TGG | - | chr4_1:55660160-55660179 | Msa0557350:CDS | 30.0% | |
| TAACATTGAATTCCAAGATC+AGG | - | chr4_1:55660267-55660286 | Msa0557350:CDS | 30.0% | |
| TTATCAGTAGAAATCGAACT+CGG | - | chr4_1:55660358-55660377 | Msa0557350:CDS | 30.0% | |
| TTGTGTGTGAATGATTGAAT+AGG | - | chr4_1:55660466-55660485 | Msa0557350:CDS | 30.0% | |
| TGTGTGTGAATGATTGAATA+GGG | - | chr4_1:55660467-55660486 | Msa0557350:CDS | 30.0% | |
| ! | TGAAGTATCTCTTGATCATT+CGG | + | chr4_1:55660539-55660558 | None:intergenic | 30.0% |
| TCAATAAGAGGATGAAGTTT+GGG | + | chr4_1:55660593-55660612 | None:intergenic | 30.0% | |
| ATCAATAAGAGGATGAAGTT+TGG | + | chr4_1:55660594-55660613 | None:intergenic | 30.0% | |
| ! | TTTTATCACTGAGAATGCAA+GGG | + | chr4_1:55660979-55660998 | None:intergenic | 30.0% |
| ! | ATTTTATCACTGAGAATGCA+AGG | + | chr4_1:55660980-55660999 | None:intergenic | 30.0% |
| GCATTCTCAGTGATAAAATT+TGG | - | chr4_1:55660981-55661000 | Msa0557350:intron | 30.0% | |
| CTGGTAAAATATCTTATTCC+AGG | + | chr4_1:55661272-55661291 | None:intergenic | 30.0% | |
| GAAGAAATTAAGCAAATGAG+AGG | - | chr4_1:55661395-55661414 | Msa0557350:intron | 30.0% | |
| TGTTTACACAATCTTCTCTT+TGG | + | chr4_1:55661583-55661602 | None:intergenic | 30.0% | |
| TTGTAAGGATCATCAAGAAA+AGG | + | chr4_1:55661666-55661685 | None:intergenic | 30.0% | |
| !!! | TTGCTGTTTTTATGTAACTC+AGG | - | chr4_1:55661749-55661768 | Msa0557350:intron | 30.0% |
| !!! | CCTTGTGCTTTATTTTCATT+GGG | + | chr4_1:55661791-55661810 | None:intergenic | 30.0% |
| !!! | TCCTTGTGCTTTATTTTCAT+TGG | + | chr4_1:55661792-55661811 | None:intergenic | 30.0% |
| ATGAAAATAAAGCACAAGGA+AGG | - | chr4_1:55661792-55661811 | Msa0557350:intron | 30.0% | |
| !! | ATTGACATAAATGGCTTGTT+GGG | + | chr4_1:55661986-55662005 | None:intergenic | 30.0% |
| ! | AATCTCTTTTCCGTATGTTT+TGG | - | chr4_1:55662050-55662069 | Msa0557350:intron | 30.0% |
| ! | ATCTCTTTTCCGTATGTTTT+GGG | - | chr4_1:55662051-55662070 | Msa0557350:intron | 30.0% |
| ATAGAGATAAAACACAGACT+CGG | - | chr4_1:55662161-55662180 | Msa0557350:intron | 30.0% | |
| !!! | CCCTTTTAATATTTTGGAAC+GGG | + | chr4_1:55662208-55662227 | None:intergenic | 30.0% |
| CCCGTTCCAAAATATTAAAA+GGG | - | chr4_1:55662205-55662224 | Msa0557350:intron | 30.0% | |
| !! | GCCCTTTTAATATTTTGGAA+CGG | + | chr4_1:55662209-55662228 | None:intergenic | 30.0% |
| !!! | AACTTGTTTTGGGATCATTT+TGG | - | chr4_1:55662424-55662443 | Msa0557350:intron | 30.0% |
| !! | AGTCTTTTGTTATAACATGC+AGG | - | chr4_1:55662596-55662615 | Msa0557350:CDS | 30.0% |
| TAAAAAAAGATGGACAGATC+CGG | - | chr4_1:55662621-55662640 | Msa0557350:intron | 30.0% | |
| ! | ACTAGACCAGTTTTTATTGA+TGG | - | chr4_1:55662752-55662771 | Msa0557350:intron | 30.0% |
| AGTAATGAAGAAGAGAAAGA+TGG | - | chr4_1:55662878-55662897 | Msa0557350:CDS | 30.0% | |
| ! | TGGTGAAATAGTTGTTTCAA+AGG | - | chr4_1:55662898-55662917 | Msa0557350:CDS | 30.0% |
| ! | TGCAGTATCCTTGATAATAT+TGG | + | chr4_1:55662966-55662985 | None:intergenic | 30.0% |
| GATACTGCAAGTTATGAAAA+TGG | - | chr4_1:55662977-55662996 | Msa0557350:CDS | 30.0% | |
| !! | AATGGACTGATGATAAATCA+AGG | - | chr4_1:55662995-55663014 | Msa0557350:exon | 30.0% |
| TGACAATGTTGGTCATAATT+TGG | - | chr4_1:55663081-55663100 | Msa0557350:intron | 30.0% | |
| GACAATGTTGGTCATAATTT+GGG | - | chr4_1:55663082-55663101 | Msa0557350:intron | 30.0% | |
| ATCCCAATTTATTCCAAACT+TGG | - | chr4_1:55663114-55663133 | Msa0557350:intron | 30.0% | |
| TAGCTATGTGAAAAACTTCT+TGG | - | chr4_1:55663208-55663227 | Msa0557350:intron | 30.0% | |
| TATAGCTACATAGATGTTGA+TGG | - | chr4_1:55663258-55663277 | Msa0557350:five_prime_UTR | 30.0% | |
| TTCCATTCTCTTCCTATAAG+AGG | - | chr4_1:55659857-55659876 | Msa0557350:three_prime_UTR | 35.0% | |
| TTCCTATAAGAGGTGATTCA+GGG | - | chr4_1:55659867-55659886 | Msa0557350:three_prime_UTR | 35.0% | |
| ATGACTCAGATGATCAAGAT+AGG | - | chr4_1:55660125-55660144 | Msa0557350:CDS | 35.0% | |
| TGACTCAGATGATCAAGATA+GGG | - | chr4_1:55660126-55660145 | Msa0557350:CDS | 35.0% | |
| TCAATGTTATGACCACATGA+GGG | + | chr4_1:55660256-55660275 | None:intergenic | 35.0% | |
| TTCAATGTTATGACCACATG+AGG | + | chr4_1:55660257-55660276 | None:intergenic | 35.0% | |
| AAGTTTGCATCGTAAGTGAT+TGG | + | chr4_1:55660421-55660440 | None:intergenic | 35.0% | |
| TCAAGAGATACTTCAGCATT+TGG | - | chr4_1:55660544-55660563 | Msa0557350:intron | 35.0% | |
| GGTATGAACTCATCAATAAG+AGG | + | chr4_1:55660605-55660624 | None:intergenic | 35.0% | |
| !! | TTTTTCTCTGGTTTGATGCA+TGG | - | chr4_1:55660704-55660723 | Msa0557350:intron | 35.0% |
| ! | TTGATGCATGGTTTGGATTA+TGG | - | chr4_1:55660716-55660735 | Msa0557350:intron | 35.0% |
| TTTATCACTGAGAATGCAAG+GGG | + | chr4_1:55660978-55660997 | None:intergenic | 35.0% | |
| CCCAATGAAAATAAAGCACA+AGG | - | chr4_1:55661788-55661807 | Msa0557350:intron | 35.0% | |
| GAAGGAGACAAAAATGAGAA+AGG | - | chr4_1:55661810-55661829 | Msa0557350:intron | 35.0% | |
| GAAAGAACAAACCAAAATCC+TGG | - | chr4_1:55661918-55661937 | Msa0557350:intron | 35.0% | |
| ! | TAATTGCATCTCCAGGATTT+TGG | + | chr4_1:55661932-55661951 | None:intergenic | 35.0% |
| !! | TTGACATAAATGGCTTGTTG+GGG | + | chr4_1:55661985-55662004 | None:intergenic | 35.0% |
| ! | GATTGACATAAATGGCTTGT+TGG | + | chr4_1:55661987-55662006 | None:intergenic | 35.0% |
| TAGAGATAAAACACAGACTC+GGG | - | chr4_1:55662162-55662181 | Msa0557350:intron | 35.0% | |
| GCCCGTTCCAAAATATTAAA+AGG | - | chr4_1:55662204-55662223 | Msa0557350:intron | 35.0% | |
| TGAGTGTACAAAAAGTGAGT+TGG | + | chr4_1:55662575-55662594 | None:intergenic | 35.0% | |
| CATGCAGGTGTAAAAAAAGA+TGG | - | chr4_1:55662611-55662630 | Msa0557350:intron | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | - | chr4_1:55662679-55662698 | Msa0557350:intron | 35.0% | |
| AAGGTTCAAACTGATGAAGA+AGG | - | chr4_1:55662698-55662717 | Msa0557350:intron | 35.0% | |
| TCTCTTCTTCATTACTACCA+AGG | + | chr4_1:55662874-55662893 | None:intergenic | 35.0% | |
| TGAGAATGGTAGTAATCCAT+AGG | + | chr4_1:55663049-55663068 | None:intergenic | 35.0% | |
| ATTCCAAACTTGGTTATGCA+AGG | - | chr4_1:55663124-55663143 | Msa0557350:intron | 35.0% | |
| TTCCTTTATTCGATTGGCAA+TGG | - | chr4_1:55663156-55663175 | Msa0557350:intron | 35.0% | |
| ATCCATTGCCAATCGAATAA+AGG | + | chr4_1:55663161-55663180 | None:intergenic | 35.0% | |
| CACCTCTTATAGGAAGAGAA+TGG | + | chr4_1:55659862-55659881 | None:intergenic | 40.0% | |
| CTTCCTATAAGAGGTGATTC+AGG | - | chr4_1:55659866-55659885 | Msa0557350:three_prime_UTR | 40.0% | |
| TTCCCTGAATCACCTCTTAT+AGG | + | chr4_1:55659872-55659891 | None:intergenic | 40.0% | |
| !! | CTGTGATATTTGTTGTAGGG+TGG | - | chr4_1:55660024-55660043 | Msa0557350:CDS | 40.0% |
| !! | ATATTTGTTGTAGGGTGGTG+TGG | - | chr4_1:55660029-55660048 | Msa0557350:CDS | 40.0% |
| GACTCAGATGATCAAGATAG+GGG | - | chr4_1:55660127-55660146 | Msa0557350:CDS | 40.0% | |
| GTACTTTCATTGCTAGTTCC+AGG | + | chr4_1:55660181-55660200 | None:intergenic | 40.0% | |
| CAATGTTATGACCACATGAG+GGG | + | chr4_1:55660255-55660274 | None:intergenic | 40.0% | |
| AAATCGAACTCGGTATTCTC+TGG | - | chr4_1:55660368-55660387 | Msa0557350:CDS | 40.0% | |
| GTGTGAATGATTGAATAGGG+TGG | - | chr4_1:55660470-55660489 | Msa0557350:CDS | 40.0% | |
| ACTTCAGCATTTGGAAGCAA+AGG | - | chr4_1:55660553-55660572 | Msa0557350:intron | 40.0% | |
| GAGTTCATACCAACACTTGA+AGG | - | chr4_1:55660614-55660633 | Msa0557350:intron | 40.0% | |
| ! | TTAAGACCTGGTAGCTTTTC+TGG | + | chr4_1:55660665-55660684 | None:intergenic | 40.0% |
| CTAGACGTTATTCCTTTGAC+TGG | + | chr4_1:55661291-55661310 | None:intergenic | 40.0% | |
| CAGTCAAAGGAATAACGTCT+AGG | - | chr4_1:55661289-55661308 | Msa0557350:intron | 40.0% | |
| !! | TGGTGTTACAAAACCTGATC+CGG | - | chr4_1:55662077-55662096 | Msa0557350:intron | 40.0% |
| ! | ACGACGCTTAACTTTTGGAT+TGG | - | chr4_1:55662100-55662119 | Msa0557350:intron | 40.0% |
| ! | CGACGCTTAACTTTTGGATT+GGG | - | chr4_1:55662101-55662120 | Msa0557350:intron | 40.0% |
| !!! | TTAATATTTTGGAACGGGCC+AGG | + | chr4_1:55662203-55662222 | None:intergenic | 40.0% |
| AATGTTATTAGGGCCAAGTG+AGG | - | chr4_1:55662542-55662561 | Msa0557350:CDS | 40.0% | |
| ATGTTATTAGGGCCAAGTGA+GGG | - | chr4_1:55662543-55662562 | Msa0557350:CDS | 40.0% | |
| ! | CCTGTTGTGTATGCTTTAGA+TGG | + | chr4_1:55662662-55662681 | None:intergenic | 40.0% |
| ! | CCATCTAAAGCATACACAAC+AGG | - | chr4_1:55662659-55662678 | Msa0557350:intron | 40.0% |
| AAGCATACACAACAGGAACA+AGG | - | chr4_1:55662666-55662685 | Msa0557350:intron | 40.0% | |
| AAGAAGGAAGTGAGACAAGA+TGG | - | chr4_1:55662714-55662733 | Msa0557350:intron | 40.0% | |
| AGACAAGATGGCACAAAACA+GGG | - | chr4_1:55662726-55662745 | Msa0557350:intron | 40.0% | |
| ! | CTTCTTTTGCCTTCCATAGT+TGG | + | chr4_1:55662816-55662835 | None:intergenic | 40.0% |
| AGAAGCCAGAGAAAACCAAT+TGG | - | chr4_1:55662831-55662850 | Msa0557350:CDS | 40.0% | |
| GAAGCCAGAGAAAACCAATT+GGG | - | chr4_1:55662832-55662851 | Msa0557350:CDS | 40.0% | |
| !!! | ATCACCCAATTGGTTTTCTC+TGG | + | chr4_1:55662839-55662858 | None:intergenic | 40.0% |
| ! | GTATTGATGCATCACCCAAT+TGG | + | chr4_1:55662849-55662868 | None:intergenic | 40.0% |
| CTTCTTCATTACTACCAAGG+TGG | + | chr4_1:55662871-55662890 | None:intergenic | 40.0% | |
| TTATTTCCACCACATTGTCG+AGG | + | chr4_1:55662941-55662960 | None:intergenic | 40.0% | |
| GAGGAGCTTCATTATCATCT+TGG | + | chr4_1:55663027-55663046 | None:intergenic | 40.0% | |
| ! | TGATAATGAAGCTCCTCCTA+TGG | - | chr4_1:55663030-55663049 | Msa0557350:five_prime_UTR | 40.0% |
| GAATGGTAGTAATCCATAGG+AGG | + | chr4_1:55663046-55663065 | None:intergenic | 40.0% | |
| TCACCTTGCATAACCAAGTT+TGG | + | chr4_1:55663130-55663149 | None:intergenic | 40.0% | |
| AACTTGGTTATGCAAGGTGA+TGG | - | chr4_1:55663130-55663149 | Msa0557350:intron | 40.0% | |
| TGGCTCTTCCTTTATTCGAT+TGG | - | chr4_1:55663150-55663169 | Msa0557350:intron | 40.0% | |
| CAATGGATGCAAACAAAGCT+GGG | - | chr4_1:55663173-55663192 | Msa0557350:intron | 40.0% | |
| AGGAGAAGGAATGAGGCAAA+GGG | + | chr4_1:55659733-55659752 | None:intergenic | 45.0% | |
| GCAAGTTAGGGTTCGAACTT+CGG | + | chr4_1:55660233-55660252 | None:intergenic | 45.0% | |
| CCAACACTTGAAGGAGAGAA+CGG | - | chr4_1:55660623-55660642 | Msa0557350:intron | 45.0% | |
| ACACATCCAGAAAAGCTACC+AGG | - | chr4_1:55660656-55660675 | Msa0557350:intron | 45.0% | |
| ! | CTCTGGTTTGATGCATGGTT+TGG | - | chr4_1:55660709-55660728 | Msa0557350:intron | 45.0% |
| TGCATGCAAACTTGTCGAGT+TGG | + | chr4_1:55661442-55661461 | None:intergenic | 45.0% | |
| !! | TTTCCGTATGTTTTGGGCAG+TGG | - | chr4_1:55662057-55662076 | Msa0557350:intron | 45.0% |
| ACACCACTGCCCAAAACATA+CGG | + | chr4_1:55662063-55662082 | None:intergenic | 45.0% | |
| ! | TCCAAAAGTTAAGCGTCGTC+CGG | + | chr4_1:55662099-55662118 | None:intergenic | 45.0% |
| GAGACAAGATGGCACAAAAC+AGG | - | chr4_1:55662725-55662744 | Msa0557350:intron | 45.0% | |
| CTAGTCCTCTACACCAACTA+TGG | - | chr4_1:55662800-55662819 | Msa0557350:intron | 45.0% | |
| TCCTCTACACCAACTATGGA+AGG | - | chr4_1:55662804-55662823 | Msa0557350:intron | 45.0% | |
| GTGATGCATCAATACCACCT+TGG | - | chr4_1:55662854-55662873 | Msa0557350:CDS | 45.0% | |
| GCAATGGATGCAAACAAAGC+TGG | - | chr4_1:55663172-55663191 | Msa0557350:intron | 45.0% | |
| !! | AATATATAACAAAATAAAAA+AGG | + | chr4_1:55659951-55659970 | None:intergenic | 5.0% |
| !! | ATATATTTATTCTATATATA+TGG | - | chr4_1:55663380-55663399 | Msa0557350:five_prime_UTR | 5.0% |
| AGGAATGAGGCAAAGGGAGA+GGG | + | chr4_1:55659727-55659746 | None:intergenic | 50.0% | |
| AAGGAATGAGGCAAAGGGAG+AGG | + | chr4_1:55659728-55659747 | None:intergenic | 50.0% | |
| GAGGAGAAGGAATGAGGCAA+AGG | + | chr4_1:55659734-55659753 | None:intergenic | 50.0% | |
| GAGAGAGAGGAGAAGGAATG+AGG | + | chr4_1:55659740-55659759 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGGAGA+AGG | + | chr4_1:55659747-55659766 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4_1:55659751-55659770 | None:intergenic | 50.0% | |
| GTTAGGGTTCGAACTTCGGT+TGG | + | chr4_1:55660229-55660248 | None:intergenic | 50.0% | |
| ACCACATGAGGGGCAAGTTA+GGG | + | chr4_1:55660245-55660264 | None:intergenic | 50.0% | |
| GGGTGGAATCAATGAACTGC+CGG | - | chr4_1:55660487-55660506 | Msa0557350:intron | 50.0% | |
| GGTGGAATCAATGAACTGCC+GGG | - | chr4_1:55660488-55660507 | Msa0557350:intron | 50.0% | |
| CAATGAACTGCCGGGTTTAC+CGG | - | chr4_1:55660496-55660515 | Msa0557350:intron | 50.0% | |
| GGATCAAACTTCACTCCTGC+CGG | + | chr4_1:55660518-55660537 | None:intergenic | 50.0% | |
| CCGTTCTCTCCTTCAAGTGT+TGG | + | chr4_1:55660626-55660645 | None:intergenic | 50.0% | |
| TGAGTGCACCAAACTCAGTG+CGG | - | chr4_1:55661462-55661481 | Msa0557350:intron | 50.0% | |
| ! | TCCGGACGACGCTTAACTTT+TGG | - | chr4_1:55662095-55662114 | Msa0557350:intron | 50.0% |
| TCGTACCTCTCGAGTGTGAT+CGG | - | chr4_1:55662478-55662497 | Msa0557350:CDS | 50.0% | |
| TAAACCCGATCACACTCGAG+AGG | + | chr4_1:55662486-55662505 | None:intergenic | 50.0% | |
| AGTTGGATGTGTCCCTCACT+TGG | + | chr4_1:55662558-55662577 | None:intergenic | 50.0% | |
| AGATCCGGCACTTCTTTCAC+AGG | - | chr4_1:55662636-55662655 | Msa0557350:intron | 50.0% | |
| ! | ATGGCCTGTGAAAGAAGTGC+CGG | + | chr4_1:55662643-55662662 | None:intergenic | 50.0% |
| ! | GCCTTCCATAGTTGGTGTAG+AGG | + | chr4_1:55662808-55662827 | None:intergenic | 50.0% |
| GGAATGAGGCAAAGGGAGAG+GGG | + | chr4_1:55659726-55659745 | None:intergenic | 55.0% | |
| ! | ACCCTAACTTGCCCCTCATG+TGG | - | chr4_1:55660241-55660260 | Msa0557350:CDS | 55.0% |
| GACCACATGAGGGGCAAGTT+AGG | + | chr4_1:55660246-55660265 | None:intergenic | 55.0% | |
| TTCACTCCTGCCGGTAAACC+CGG | + | chr4_1:55660509-55660528 | None:intergenic | 55.0% | |
| CAATGCCACCGCACTGAGTT+TGG | + | chr4_1:55661473-55661492 | None:intergenic | 55.0% | |
| ! | AGTTAAGCGTCGTCCGGATC+AGG | + | chr4_1:55662093-55662112 | None:intergenic | 55.0% |
| CACAGACTCGGGTTAACCCT+CGG | - | chr4_1:55662173-55662192 | Msa0557350:intron | 55.0% | |
| GGGTTAACCCTCGGATTACC+TGG | - | chr4_1:55662182-55662201 | Msa0557350:intron | 55.0% | |
| CGTACCTCTCGAGTGTGATC+GGG | - | chr4_1:55662479-55662498 | Msa0557350:CDS | 55.0% | |
| CACATTGTCGAGGCTGTGTC+TGG | + | chr4_1:55662931-55662950 | None:intergenic | 55.0% | |
| CAGACACAGCCTCGACAATG+TGG | - | chr4_1:55662929-55662948 | Msa0557350:CDS | 55.0% | |
| ACACAGCCTCGACAATGTGG+TGG | - | chr4_1:55662932-55662951 | Msa0557350:CDS | 55.0% | |
| GTGCACCAAACTCAGTGCGG+TGG | - | chr4_1:55661465-55661484 | Msa0557350:intron | 60.0% | |
| GAACGGGCCAGGTAATCCGA+GGG | + | chr4_1:55662192-55662211 | None:intergenic | 60.0% | |
| GAACTGCCGGGTTTACCGGC+AGG | - | chr4_1:55660500-55660519 | Msa0557350:intron | 65.0% | |
| GGAACGGGCCAGGTAATCCG+AGG | + | chr4_1:55662193-55662212 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55659686 | 55663429 | 55659686 | ID=Msa0557350;Name=Msa0557350 |
| chr4_1 | mRNA | 55659686 | 55663429 | 55659686 | ID=Msa0557350-mRNA-1;Parent=Msa0557350;Name=Msa0557350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=263|1|1|1|0.66|0.5|4|219|319 |
| chr4_1 | exon | 55659686 | 55660497 | 55659686 | ID=Msa0557350-mRNA-1:exon:16658;Parent=Msa0557350-mRNA-1 |
| chr4_1 | exon | 55662438 | 55662627 | 55662438 | ID=Msa0557350-mRNA-1:exon:16657;Parent=Msa0557350-mRNA-1 |
| chr4_1 | exon | 55662827 | 55663073 | 55662827 | ID=Msa0557350-mRNA-1:exon:16656;Parent=Msa0557350-mRNA-1 |
| chr4_1 | exon | 55663237 | 55663429 | 55663237 | ID=Msa0557350-mRNA-1:exon:16655;Parent=Msa0557350-mRNA-1 |
| chr4_1 | five_prime_UTR | 55663237 | 55663429 | 55663237 | ID=Msa0557350-mRNA-1:five_prime_utr;Parent=Msa0557350-mRNA-1 |
| chr4_1 | five_prime_UTR | 55663004 | 55663073 | 55663004 | ID=Msa0557350-mRNA-1:five_prime_utr;Parent=Msa0557350-mRNA-1 |
| chr4_1 | CDS | 55662827 | 55663003 | 55662827 | ID=Msa0557350-mRNA-1:cds;Parent=Msa0557350-mRNA-1 |
| chr4_1 | CDS | 55662438 | 55662627 | 55662438 | ID=Msa0557350-mRNA-1:cds;Parent=Msa0557350-mRNA-1 |
| chr4_1 | CDS | 55659905 | 55660497 | 55659905 | ID=Msa0557350-mRNA-1:cds;Parent=Msa0557350-mRNA-1 |
| chr4_1 | three_prime_UTR | 55659686 | 55659904 | 55659686 | ID=Msa0557350-mRNA-1:three_prime_utr;Parent=Msa0557350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
