Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559310 | XP_003608318.2 | 84.932 | 365 | 9 | 2 | 9 | 327 | 40 | 404 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559310 | sp|Q9LPM9|BCAT6_ARATH | 54.596 | 359 | 108 | 6 | 17 | 327 | 1 | 352 | 1.26e-132 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559310 | A0A396IFU1 | 84.932 | 365 | 9 | 2 | 9 | 327 | 40 | 404 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0559310 | Msa0654600 | 0.824280 | 8.791063e-54 | -8.615850e-47 |
| Msa0559310 | Msa1381900 | 0.832279 | 1.035271e-55 | -8.615850e-47 |
| Msa0559310 | Msa1412770 | 0.855336 | 6.755825e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559310 | MtrunA17_Chr4g0049241 | 84.932 | 365 | 9 | 2 | 9 | 327 | 40 | 404 | 0.0 | 614 |
| Msa0559310 | MtrunA17_Chr3g0135321 | 51.149 | 348 | 119 | 5 | 28 | 327 | 43 | 387 | 5.70e-122 | 355 |
| Msa0559310 | MtrunA17_Chr5g0400811 | 49.185 | 368 | 134 | 6 | 9 | 326 | 43 | 407 | 8.63e-116 | 340 |
| Msa0559310 | MtrunA17_Chr4g0049231 | 45.961 | 359 | 144 | 4 | 17 | 327 | 1 | 357 | 1.35e-111 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559310 | AT1G50110.1 | 54.596 | 359 | 108 | 6 | 17 | 327 | 1 | 352 | 1.28e-133 | 384 |
| Msa0559310 | AT1G50090.1 | 52.676 | 355 | 119 | 4 | 20 | 327 | 3 | 355 | 4.75e-128 | 370 |
| Msa0559310 | AT1G10070.1 | 51.124 | 356 | 123 | 5 | 21 | 327 | 35 | 388 | 1.50e-127 | 370 |
| Msa0559310 | AT1G10070.2 | 51.124 | 356 | 123 | 5 | 21 | 327 | 35 | 388 | 1.50e-127 | 370 |
| Msa0559310 | AT1G50110.2 | 55.172 | 319 | 94 | 4 | 56 | 327 | 1 | 317 | 9.10e-122 | 353 |
| Msa0559310 | AT1G10060.2 | 49.861 | 359 | 129 | 5 | 16 | 326 | 28 | 383 | 4.60e-118 | 346 |
| Msa0559310 | AT1G10070.3 | 52.500 | 320 | 102 | 4 | 56 | 327 | 1 | 318 | 9.48e-118 | 342 |
| Msa0559310 | AT3G19710.1 | 49.263 | 339 | 123 | 4 | 36 | 327 | 15 | 351 | 4.16e-117 | 342 |
| Msa0559310 | AT1G10060.5 | 50.139 | 359 | 128 | 5 | 16 | 326 | 124 | 479 | 8.48e-117 | 346 |
| Msa0559310 | AT5G65780.1 | 50.142 | 351 | 123 | 6 | 25 | 326 | 67 | 414 | 1.23e-114 | 338 |
| Msa0559310 | AT3G49680.1 | 51.009 | 347 | 118 | 6 | 30 | 326 | 68 | 412 | 1.08e-113 | 335 |
| Msa0559310 | AT3G49680.2 | 51.009 | 347 | 118 | 6 | 30 | 326 | 66 | 410 | 1.20e-113 | 335 |
| Msa0559310 | AT1G10060.3 | 51.411 | 319 | 105 | 4 | 56 | 326 | 1 | 317 | 2.33e-107 | 316 |
| Msa0559310 | AT1G10060.7 | 49.383 | 324 | 113 | 5 | 16 | 291 | 28 | 348 | 1.59e-101 | 303 |
| Msa0559310 | AT1G10060.4 | 49.691 | 324 | 112 | 5 | 16 | 291 | 124 | 444 | 2.17e-100 | 303 |
| Msa0559310 | AT1G10060.1 | 53.755 | 253 | 98 | 4 | 16 | 252 | 28 | 277 | 3.47e-91 | 275 |
| Msa0559310 | AT1G10060.6 | 53.755 | 253 | 98 | 4 | 16 | 252 | 124 | 373 | 6.35e-90 | 275 |
Find 98 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGTTCAGTTTATTATAAA+TGG | 0.157123 | 4_1:-58515131 | None:intergenic |
| GTTTATTATAAATGGAAATT+TGG | 0.163762 | 4_1:-58515123 | None:intergenic |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | 4_1:-58509906 | None:intergenic |
| GTCCAAGTAGATTGAGAAAT+TGG | 0.258521 | 4_1:+58514959 | Msa0559310:exon |
| CTAATCATCAATAGTATGTT+TGG | 0.287341 | 4_1:+58515025 | Msa0559310:three_prime_UTR |
| AAAGAATAGTGTAATGAAAT+TGG | 0.297685 | 4_1:-58508864 | None:intergenic |
| AAAATTATGCTGACATCAAT+TGG | 0.313617 | 4_1:+58509194 | Msa0559310:CDS |
| CATCATTTCCTCCACTGATA+TGG | 0.317405 | 4_1:-58514614 | None:intergenic |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4_1:+58510226 | Msa0559310:CDS |
| CAAACATACTATTGATGATT+AGG | 0.337825 | 4_1:-58515024 | None:intergenic |
| TATCTTAGGCCTTTGCTGAT+AGG | 0.349392 | 4_1:+58510240 | Msa0559310:CDS |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4_1:+58510839 | Msa0559310:CDS |
| GGAGCCATGGTTGAGAGAAA+TGG | 0.384534 | 4_1:-58509015 | None:intergenic |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | 4_1:-58510324 | None:intergenic |
| AGGCCTTTGCTGATAGGAAC+AGG | 0.426821 | 4_1:+58510246 | Msa0559310:CDS |
| TGCCAATTTCTCAATCTACT+TGG | 0.427171 | 4_1:-58514961 | None:intergenic |
| ATACTGGTTGGAATACAAAC+AGG | 0.434484 | 4_1:+58514908 | Msa0559310:CDS |
| TCAGTGTCCCTTAAAATAGA+AGG | 0.444685 | 4_1:-58509039 | None:intergenic |
| GAGCCATGGTTGAGAGAAAT+GGG | 0.455630 | 4_1:-58509014 | None:intergenic |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4_1:+58510510 | Msa0559310:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4_1:-58509300 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4_1:-58509790 | None:intergenic |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | 4_1:+58509256 | Msa0559310:CDS |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4_1:+58510309 | Msa0559310:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4_1:+58510204 | Msa0559310:intron |
| GAAAACCCATGTCAAGCATA+TGG | 0.470762 | 4_1:-58508978 | None:intergenic |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4_1:-58509774 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4_1:+58509898 | Msa0559310:CDS |
| TGCAGAGCTGAATATAAAAC+AGG | 0.474986 | 4_1:+58514854 | Msa0559310:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4_1:+58509811 | Msa0559310:CDS |
| GATTTCAGTTGCAAACATAC+AGG | 0.481875 | 4_1:+58515047 | Msa0559310:three_prime_UTR |
| TGTTGCATCTGTAACACATA+AGG | 0.484625 | 4_1:+58514684 | Msa0559310:CDS |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4_1:-58510222 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4_1:+58509761 | Msa0559310:intron |
| TATAAATGGAAATTTGGACT+TGG | 0.509183 | 4_1:-58515117 | None:intergenic |
| AGTTGCAAACATACAGGTAG+AGG | 0.514094 | 4_1:+58515053 | Msa0559310:three_prime_UTR |
| ATAGGAACAGGAGCTGCATT+AGG | 0.514522 | 4_1:+58510258 | Msa0559310:CDS |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4_1:+58509812 | Msa0559310:CDS |
| AACAGGAGCTGCATTAGGCT+TGG | 0.520575 | 4_1:+58510263 | Msa0559310:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4_1:-58509803 | None:intergenic |
| AAATTATGCTGACATCAATT+GGG | 0.528575 | 4_1:+58509195 | Msa0559310:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4_1:+58510504 | Msa0559310:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4_1:+58510211 | Msa0559310:intron |
| AAACTACGAGGAATACTGGT+TGG | 0.534155 | 4_1:+58514896 | Msa0559310:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | 4_1:-58509241 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4_1:+58510210 | Msa0559310:intron |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4_1:+58509292 | Msa0559310:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4_1:+58510495 | Msa0559310:CDS |
| TATAAGCCATATGCTTGACA+TGG | 0.553202 | 4_1:+58508972 | Msa0559310:exon |
| GTTGTGTATGCCGTCACCAT+CGG | 0.553830 | 4_1:+58509844 | Msa0559310:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4_1:-58509331 | None:intergenic |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4_1:-58510216 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4_1:+58509319 | Msa0559310:CDS |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4_1:-58510819 | None:intergenic |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4_1:-58510294 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4_1:+58510803 | Msa0559310:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4_1:+58509813 | Msa0559310:CDS |
| AACTGCTCAACCGATGGTGA+CGG | 0.583708 | 4_1:-58509854 | None:intergenic |
| CTGTAACACATAAGGAAACA+AGG | 0.585202 | 4_1:+58514692 | Msa0559310:CDS |
| AGGAGGACTAAACTTAAAAG+TGG | 0.585609 | 4_1:+58510467 | Msa0559310:CDS |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4_1:-58509330 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4_1:+58509312 | Msa0559310:CDS |
| AATACAAACAGGGCGTATTG+AGG | 0.599236 | 4_1:+58514919 | Msa0559310:CDS |
| AGCAACTGGAAACAATATTG+AGG | 0.599305 | 4_1:+58510853 | Msa0559310:CDS |
| ATAAGCCATATGCTTGACAT+GGG | 0.602322 | 4_1:+58508973 | Msa0559310:exon |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4_1:+58510513 | Msa0559310:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4_1:+58509762 | Msa0559310:intron |
| GTGTGTGAATCTGCTTTGTG+TGG | 0.604347 | 4_1:+58515179 | Msa0559310:three_prime_UTR |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4_1:+58510501 | Msa0559310:CDS |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4_1:+58510886 | Msa0559310:CDS |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4_1:+58514603 | Msa0559310:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.608817 | 4_1:+58510205 | Msa0559310:intron |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4_1:-58510288 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4_1:+58514640 | Msa0559310:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | 4_1:+58509199 | Msa0559310:CDS |
| TAAAATAGAAGGAGGAGCCA+TGG | 0.616010 | 4_1:-58509028 | None:intergenic |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4_1:+58509897 | Msa0559310:CDS |
| GCTCCTGTTCCTATCAGCAA+AGG | 0.618333 | 4_1:-58510249 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4_1:-58509299 | None:intergenic |
| TCAACAAACTGCTCAACCGA+TGG | 0.620399 | 4_1:-58509860 | None:intergenic |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4_1:+58510542 | Msa0559310:CDS |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4_1:+58509814 | Msa0559310:CDS |
| AGGACTAAACTTAAAAGTGG+AGG | 0.636347 | 4_1:+58510470 | Msa0559310:CDS |
| GATCCCATTTCTCTCAACCA+TGG | 0.639439 | 4_1:+58509011 | Msa0559310:CDS |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4_1:+58514606 | Msa0559310:CDS |
| AACTGGAAACAATATTGAGG+AGG | 0.649999 | 4_1:+58510856 | Msa0559310:CDS |
| TTCCAAGCTACTGGCTACAA+CGG | 0.650241 | 4_1:-58515232 | None:intergenic |
| GTGTCCCTTAAAATAGAAGG+AGG | 0.657112 | 4_1:-58509036 | None:intergenic |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4_1:-58509799 | None:intergenic |
| ACAAGTATTATCATTTAACA+AGG | 0.662636 | 4_1:-58514987 | None:intergenic |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | 4_1:-58510323 | None:intergenic |
| ATGTGTTACAGATGCAACAG+AGG | 0.668679 | 4_1:-58514680 | None:intergenic |
| ACACTGAAGATGGTTCTCAA+AGG | 0.671471 | 4_1:+58509055 | Msa0559310:CDS |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4_1:-58510219 | None:intergenic |
| TACTGGTTGGAATACAAACA+GGG | 0.699480 | 4_1:+58514909 | Msa0559310:CDS |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | 4_1:-58510322 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | 4_1:+58510323 | Msa0559310:CDS |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4_1:+58514651 | Msa0559310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAATATATAATAATT+TGG | - | chr4_1:58510629-58510648 | None:intergenic | 10.0% |
| !!! | AAATTATTATATATTTTCCT+TGG | + | chr4_1:58510628-58510647 | Msa0559310:intron | 10.0% |
| !! | TCATGATATTAAAATAATTT+GGG | - | chr4_1:58513014-58513033 | None:intergenic | 10.0% |
| !! | ATCATGATATTAAAATAATT+TGG | - | chr4_1:58513015-58513034 | None:intergenic | 10.0% |
| !!! | AATTTTGAATGGTAATTTAA+TGG | - | chr4_1:58509090-58509109 | None:intergenic | 15.0% |
| !!! | TATTATACAAGAATTTTGAA+TGG | - | chr4_1:58509101-58509120 | None:intergenic | 15.0% |
| !!! | ATTTAAAATCATCTTACAAA+GGG | - | chr4_1:58509397-58509416 | None:intergenic | 15.0% |
| !!! | AATTTAAAATCATCTTACAA+AGG | - | chr4_1:58509398-58509417 | None:intergenic | 15.0% |
| !!! | CTTATATTGTTTTGTTAATA+AGG | + | chr4_1:58510367-58510386 | Msa0559310:intron | 15.0% |
| !! | GAAAATATATAATAATTTGG+AGG | - | chr4_1:58510626-58510645 | None:intergenic | 15.0% |
| !!! | ATAGAGAATATTAATGATTT+TGG | - | chr4_1:58512944-58512963 | None:intergenic | 15.0% |
| !! | TGTAAATTTGTAGAAAATAA+TGG | - | chr4_1:58514514-58514533 | None:intergenic | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | + | chr4_1:58514535-58514554 | Msa0559310:intron | 15.0% |
| !! | AAAAATTGACTAAAATGAAA+GGG | - | chr4_1:58514774-58514793 | None:intergenic | 15.0% |
| !! | AAAAAATTGACTAAAATGAA+AGG | - | chr4_1:58514775-58514794 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAATTTTTTTTGT+TGG | + | chr4_1:58514779-58514798 | Msa0559310:intron | 15.0% |
| !! | GTTTATTATAAATGGAAATT+TGG | - | chr4_1:58515126-58515145 | None:intergenic | 15.0% |
| !! | TAAGTTCAGTTTATTATAAA+TGG | - | chr4_1:58515134-58515153 | None:intergenic | 15.0% |
| !! | AAAGAATAGTGTAATGAAAT+TGG | - | chr4_1:58508867-58508886 | None:intergenic | 20.0% |
| !!! | GCAATTTTTTCATACAAAAA+CGG | - | chr4_1:58509161-58509180 | None:intergenic | 20.0% |
| !!! | TTTGTGCTTTTTAAAACTTT+TGG | - | chr4_1:58509707-58509726 | None:intergenic | 20.0% |
| !!! | AGTTTTAAAAAGCACAAAAA+TGG | + | chr4_1:58509709-58509728 | Msa0559310:intron | 20.0% |
| !!! | ACAAAAATGGTTTTTGTATA+GGG | + | chr4_1:58509722-58509741 | Msa0559310:intron | 20.0% |
| !! | TTTAAAAAAAAATAACAGGG+AGG | + | chr4_1:58510447-58510466 | Msa0559310:intron | 20.0% |
| !! | TAAATCTGTAAAATACTGTT+AGG | - | chr4_1:58511360-58511379 | None:intergenic | 20.0% |
| !!! | AACAGTATTTTACAGATTTA+TGG | + | chr4_1:58511360-58511379 | Msa0559310:intron | 20.0% |
| !!! | ACTATAAATGTTTGTCATTT+GGG | - | chr4_1:58511522-58511541 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTGAAAATGGT+GGG | - | chr4_1:58511774-58511793 | None:intergenic | 20.0% |
| !!! | ATTTAGTATTTTGAAAATGG+TGG | - | chr4_1:58511775-58511794 | None:intergenic | 20.0% |
| !!! | GTGATTTAGTATTTTGAAAA+TGG | - | chr4_1:58511778-58511797 | None:intergenic | 20.0% |
| !! | AATACTAAATCACATAAATC+CGG | + | chr4_1:58511785-58511804 | Msa0559310:intron | 20.0% |
| !! | AAACTTAACTTACTAAGTAA+TGG | - | chr4_1:58511851-58511870 | None:intergenic | 20.0% |
| !!! | ATTGGTAATCAATTAGATTT+GGG | + | chr4_1:58512307-58512326 | Msa0559310:intron | 20.0% |
| !! | ATACATTGAAGACATTATTA+GGG | - | chr4_1:58512345-58512364 | None:intergenic | 20.0% |
| !! | AATACATTGAAGACATTATT+AGG | - | chr4_1:58512346-58512365 | None:intergenic | 20.0% |
| !! | GTTAAATATTGTTATAGCAA+AGG | - | chr4_1:58512609-58512628 | None:intergenic | 20.0% |
| !! | ATTCAATGTATGATATATCT+TGG | - | chr4_1:58512673-58512692 | None:intergenic | 20.0% |
| !!! | GTGTTATATTTCATTTTATG+TGG | - | chr4_1:58512789-58512808 | None:intergenic | 20.0% |
| !! | CATGATAATATGAAAAGTAA+TGG | - | chr4_1:58513055-58513074 | None:intergenic | 20.0% |
| !! | TAAATTGTCAAAATATCAAG+TGG | - | chr4_1:58513148-58513167 | None:intergenic | 20.0% |
| !! | AATATGTTAGATTTAACATG+TGG | - | chr4_1:58513280-58513299 | None:intergenic | 20.0% |
| !! | GTTTATGTTAAATTTACATG+TGG | - | chr4_1:58513465-58513484 | None:intergenic | 20.0% |
| !! | TAAATCTGTAAAATACTGTT+AGG | - | chr4_1:58511360-58511379 | None:intergenic | 20.0% |
| !!! | AACAGTATTTTACAGATTTA+TGG | + | chr4_1:58511360-58511379 | Msa0559310:intron | 20.0% |
| !!! | ACTATAAATGTTTGTCATTT+GGG | - | chr4_1:58511522-58511541 | None:intergenic | 20.0% |
| !! | ACAAGTATTATCATTTAACA+AGG | - | chr4_1:58514990-58515009 | None:intergenic | 20.0% |
| ! | ATGAAAAAATTGCAGTGATA+TGG | + | chr4_1:58509168-58509187 | Msa0559310:intron | 25.0% |
| ! | TGAAAAAATTGCAGTGATAT+GGG | + | chr4_1:58509169-58509188 | Msa0559310:intron | 25.0% |
| ! | AAAATTATGCTGACATCAAT+TGG | + | chr4_1:58509194-58509213 | Msa0559310:CDS | 25.0% |
| ! | AAATTATGCTGACATCAATT+GGG | + | chr4_1:58509195-58509214 | Msa0559310:CDS | 25.0% |
| ! | TTATATTGCAGTCACAATTA+CGG | + | chr4_1:58509522-58509541 | Msa0559310:intron | 25.0% |
| ! | CTTAAGTATAAAGTAGTACA+AGG | - | chr4_1:58509573-58509592 | None:intergenic | 25.0% |
| !! | CACAAAAATGGTTTTTGTAT+AGG | + | chr4_1:58509721-58509740 | Msa0559310:intron | 25.0% |
| ! | ATCATCAAAAACTTATGTTG+TGG | + | chr4_1:58510080-58510099 | Msa0559310:intron | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | - | chr4_1:58510125-58510144 | None:intergenic | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | + | chr4_1:58510125-58510144 | Msa0559310:intron | 25.0% |
| ! | TATAAGTAAATCCAAATCCA+TGG | - | chr4_1:58510353-58510372 | None:intergenic | 25.0% |
| ! | TTATATACATCACTGTTTGA+TGG | + | chr4_1:58510593-58510612 | Msa0559310:intron | 25.0% |
| ! | GTTTCGGATATAGTAAAATA+TGG | - | chr4_1:58510980-58510999 | None:intergenic | 25.0% |
| ! | ACTATATCCGAAACAAAAAT+TGG | + | chr4_1:58510986-58511005 | Msa0559310:intron | 25.0% |
| !!! | CATTAGACCAATTTTTGTTT+CGG | - | chr4_1:58510996-58511015 | None:intergenic | 25.0% |
| ! | CAAGATATACAACAAATCTT+TGG | - | chr4_1:58511124-58511143 | None:intergenic | 25.0% |
| !!! | CAAAGATTTGTTGTATATCT+TGG | + | chr4_1:58511122-58511141 | Msa0559310:intron | 25.0% |
| ! | TTGAAACCTGAAAAGATTAA+TGG | + | chr4_1:58511168-58511187 | Msa0559310:intron | 25.0% |
| ! | CACTATAAATGTTTGTCATT+TGG | - | chr4_1:58511523-58511542 | None:intergenic | 25.0% |
| !!! | TAACATTGATTCAAGTCAAA+GGG | - | chr4_1:58511578-58511597 | None:intergenic | 25.0% |
| !!! | ATAACATTGATTCAAGTCAA+AGG | - | chr4_1:58511579-58511598 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAATCAATGTTA+TGG | + | chr4_1:58511578-58511597 | Msa0559310:intron | 25.0% |
| ! | TTCATATACATTAGAACCTT+TGG | - | chr4_1:58511682-58511701 | None:intergenic | 25.0% |
| !! | CTAAAGTGATTCCATTATTT+TGG | + | chr4_1:58511732-58511751 | Msa0559310:intron | 25.0% |
| !!! | TTAGTATTTTGAAAATGGTG+GGG | - | chr4_1:58511773-58511792 | None:intergenic | 25.0% |
| ! | ATAACTTACACATAGAATCT+CGG | + | chr4_1:58511935-58511954 | Msa0559310:intron | 25.0% |
| ! | CTCTTAAATTCTCATGAAAA+AGG | - | chr4_1:58512018-58512037 | None:intergenic | 25.0% |
| ! | CAAATCTAATTGATTACCAA+TGG | - | chr4_1:58512308-58512327 | None:intergenic | 25.0% |
| !! | CATTGGTAATCAATTAGATT+TGG | + | chr4_1:58512306-58512325 | Msa0559310:intron | 25.0% |
| ! | ATAACCAAACTTCATAAGAT+GGG | + | chr4_1:58512740-58512759 | Msa0559310:intron | 25.0% |
| ! | ATATATGTCGTGGAAATTTA+TGG | - | chr4_1:58513510-58513529 | None:intergenic | 25.0% |
| !! | TGATTAATGACTGCAATTTT+TGG | - | chr4_1:58513596-58513615 | None:intergenic | 25.0% |
| ! | CAAGATATACAACAAATCTT+TGG | - | chr4_1:58511124-58511143 | None:intergenic | 25.0% |
| !!! | CAAAGATTTGTTGTATATCT+TGG | + | chr4_1:58511122-58511141 | Msa0559310:intron | 25.0% |
| ! | TTGAAACCTGAAAAGATTAA+TGG | + | chr4_1:58511168-58511187 | Msa0559310:intron | 25.0% |
| ! | CACTATAAATGTTTGTCATT+TGG | - | chr4_1:58511523-58511542 | None:intergenic | 25.0% |
| !!! | TAACATTGATTCAAGTCAAA+GGG | - | chr4_1:58511578-58511597 | None:intergenic | 25.0% |
| !!! | ATAACATTGATTCAAGTCAA+AGG | - | chr4_1:58511579-58511598 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAATCAATGTTA+TGG | + | chr4_1:58511578-58511597 | Msa0559310:intron | 25.0% |
| ! | TTCATATACATTAGAACCTT+TGG | - | chr4_1:58511682-58511701 | None:intergenic | 25.0% |
| !! | CTAAAGTGATTCCATTATTT+TGG | + | chr4_1:58511732-58511751 | Msa0559310:intron | 25.0% |
| !! | TTTTCCTTAACAAGATTTGT+TGG | - | chr4_1:58514373-58514392 | None:intergenic | 25.0% |
| ! | AGAAAATAATGGCAAACATT+GGG | - | chr4_1:58514503-58514522 | None:intergenic | 25.0% |
| ! | TAGAAAATAATGGCAAACAT+TGG | - | chr4_1:58514504-58514523 | None:intergenic | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | + | chr4_1:58514579-58514598 | Msa0559310:intron | 25.0% |
| ! | TTGTGTTTAGCATTATCATT+AGG | - | chr4_1:58514819-58514838 | None:intergenic | 25.0% |
| !! | TAATGATAATGCTAAACACA+AGG | + | chr4_1:58514818-58514837 | Msa0559310:intron | 25.0% |
| !! | CAAACATACTATTGATGATT+AGG | - | chr4_1:58515027-58515046 | None:intergenic | 25.0% |
| ! | CTAATCATCAATAGTATGTT+TGG | + | chr4_1:58515025-58515044 | Msa0559310:three_prime_UTR | 25.0% |
| ! | TATAAATGGAAATTTGGACT+TGG | - | chr4_1:58515120-58515139 | None:intergenic | 25.0% |
| ! | AAAGGAGAAAAGTTTTCACA+AGG | + | chr4_1:58509274-58509293 | Msa0559310:CDS | 30.0% |
| AGCTAGTTGTCAATGATATA+TGG | + | chr4_1:58509621-58509640 | Msa0559310:intron | 30.0% | |
| !!! | TGCTTTTTAAAACTTTTGGC+TGG | - | chr4_1:58509703-58509722 | None:intergenic | 30.0% |
| ! | TTTTGTATAGGGAATCTTTG+AGG | + | chr4_1:58509733-58509752 | Msa0559310:intron | 30.0% |
| TTTGTATAGGGAATCTTTGA+GGG | + | chr4_1:58509734-58509753 | Msa0559310:intron | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | - | chr4_1:58509909-58509928 | None:intergenic | 30.0% | |
| TGAGCTTTCATAATTGAAAC+AGG | + | chr4_1:58510191-58510210 | Msa0559310:intron | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | - | chr4_1:58510297-58510316 | None:intergenic | 30.0% | |
| AAAAAAAAATAACAGGGAGG+AGG | + | chr4_1:58510450-58510469 | Msa0559310:intron | 30.0% | |
| AAATTTCATCGATCAATAGC+TGG | + | chr4_1:58510495-58510514 | Msa0559310:CDS | 30.0% | |
| TTGAGAAGAAATCACATCAA+AGG | + | chr4_1:58510677-58510696 | Msa0559310:intron | 30.0% | |
| ! | ACTGATGCATATTGTTACTT+AGG | + | chr4_1:58510700-58510719 | Msa0559310:intron | 30.0% |
| CTCTTCATTATGCATATTTC+TGG | + | chr4_1:58510760-58510779 | Msa0559310:intron | 30.0% | |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | + | chr4_1:58510826-58510845 | Msa0559310:CDS | 30.0% |
| !! | GTGCAATATATTTGTTGTGA+AGG | + | chr4_1:58510886-58510905 | Msa0559310:CDS | 30.0% |
| GTGTTTCACATTAATCTTGT+TGG | + | chr4_1:58511019-58511038 | Msa0559310:intron | 30.0% | |
| TTGTTGTATATCTTGGTTGT+TGG | + | chr4_1:58511129-58511148 | Msa0559310:intron | 30.0% | |
| TGTTGTATATCTTGGTTGTT+GGG | + | chr4_1:58511130-58511149 | Msa0559310:intron | 30.0% | |
| ! | GCATAACCATTAATCTTTTC+AGG | - | chr4_1:58511177-58511196 | None:intergenic | 30.0% |
| TCCAATATACAGTTATTGGT+GGG | - | chr4_1:58511254-58511273 | None:intergenic | 30.0% | |
| ATCCAATATACAGTTATTGG+TGG | - | chr4_1:58511255-58511274 | None:intergenic | 30.0% | |
| TGCATCCAATATACAGTTAT+TGG | - | chr4_1:58511258-58511277 | None:intergenic | 30.0% | |
| ACTGTATATTGGATGCAATA+AGG | + | chr4_1:58511261-58511280 | Msa0559310:intron | 30.0% | |
| ! | TGATTTAGAGTAAGAGAATG+AGG | + | chr4_1:58511420-58511439 | Msa0559310:intron | 30.0% |
| ! | GATTTAGAGTAAGAGAATGA+GGG | + | chr4_1:58511421-58511440 | Msa0559310:intron | 30.0% |
| !! | AACATTGATTCAAGTCAAAG+GGG | - | chr4_1:58511577-58511596 | None:intergenic | 30.0% |
| ATGTGAATGATCATAACCTT+TGG | - | chr4_1:58511623-58511642 | None:intergenic | 30.0% | |
| !! | GTTGGTGATTTCCAAAATAA+TGG | - | chr4_1:58511746-58511765 | None:intergenic | 30.0% |
| !! | TAGTATTTTGAAAATGGTGG+GGG | - | chr4_1:58511772-58511791 | None:intergenic | 30.0% |
| CACTTGTTCTAATGAATAGT+TGG | - | chr4_1:58511912-58511931 | None:intergenic | 30.0% | |
| CTTACAAGTCTCTTTATCAA+TGG | - | chr4_1:58511963-58511982 | None:intergenic | 30.0% | |
| TGTAAGATGACACATTAAGA+AGG | + | chr4_1:58511977-58511996 | Msa0559310:intron | 30.0% | |
| GAAAAAGGATATATGACACA+AGG | - | chr4_1:58512003-58512022 | None:intergenic | 30.0% | |
| GACATATAGCATATATTTGC+TGG | - | chr4_1:58512124-58512143 | None:intergenic | 30.0% | |
| TATGCTATATGTCCATTAAG+AGG | + | chr4_1:58512131-58512150 | Msa0559310:intron | 30.0% | |
| TTGGACCATAAGAAGAAAAA+GGG | - | chr4_1:58512171-58512190 | None:intergenic | 30.0% | |
| ATCTAATTGATTACCAATGG+TGG | - | chr4_1:58512305-58512324 | None:intergenic | 30.0% | |
| ATTTGACGAAATGATTGACA+AGG | - | chr4_1:58512394-58512413 | None:intergenic | 30.0% | |
| TATTCTCATAGCTATGTCTA+TGG | + | chr4_1:58512477-58512496 | Msa0559310:intron | 30.0% | |
| CATAACCAAACTTCATAAGA+TGG | + | chr4_1:58512739-58512758 | Msa0559310:intron | 30.0% | |
| TAATCCCATCTTATGAAGTT+TGG | - | chr4_1:58512747-58512766 | None:intergenic | 30.0% | |
| !! | TGTGAGTTGATATATGTTCA+TGG | - | chr4_1:58512976-58512995 | None:intergenic | 30.0% |
| ! | CCTTTTATGAATATATGTCG+TGG | - | chr4_1:58513520-58513539 | None:intergenic | 30.0% |
| CCACGACATATATTCATAAA+AGG | + | chr4_1:58513517-58513536 | Msa0559310:intron | 30.0% | |
| !! | TTACTTTTCATCCATGACTA+CGG | - | chr4_1:58513560-58513579 | None:intergenic | 30.0% |
| AAATCGAACCTAAAGATTGT+TGG | + | chr4_1:58513628-58513647 | Msa0559310:intron | 30.0% | |
| TTGTTGTATATCTTGGTTGT+TGG | + | chr4_1:58511129-58511148 | Msa0559310:intron | 30.0% | |
| TGTTGTATATCTTGGTTGTT+GGG | + | chr4_1:58511130-58511149 | Msa0559310:intron | 30.0% | |
| ! | GCATAACCATTAATCTTTTC+AGG | - | chr4_1:58511177-58511196 | None:intergenic | 30.0% |
| TCCAATATACAGTTATTGGT+GGG | - | chr4_1:58511254-58511273 | None:intergenic | 30.0% | |
| ATCCAATATACAGTTATTGG+TGG | - | chr4_1:58511255-58511274 | None:intergenic | 30.0% | |
| TGCATCCAATATACAGTTAT+TGG | - | chr4_1:58511258-58511277 | None:intergenic | 30.0% | |
| ACTGTATATTGGATGCAATA+AGG | + | chr4_1:58511261-58511280 | Msa0559310:intron | 30.0% | |
| ! | TGATTTAGAGTAAGAGAATG+AGG | + | chr4_1:58511420-58511439 | Msa0559310:intron | 30.0% |
| ! | GATTTAGAGTAAGAGAATGA+GGG | + | chr4_1:58511421-58511440 | Msa0559310:intron | 30.0% |
| !! | AACATTGATTCAAGTCAAAG+GGG | - | chr4_1:58511577-58511596 | None:intergenic | 30.0% |
| ATGTGAATGATCATAACCTT+TGG | - | chr4_1:58511623-58511642 | None:intergenic | 30.0% | |
| !! | GTTGGTGATTTCCAAAATAA+TGG | - | chr4_1:58511746-58511765 | None:intergenic | 30.0% |
| ATCACCAACAAATCTTGTTA+AGG | + | chr4_1:58514366-58514385 | Msa0559310:intron | 30.0% | |
| TACCTTATAACCCAAATCAA+TGG | - | chr4_1:58514467-58514486 | None:intergenic | 30.0% | |
| TATAAGCCATATGCTTGACA+TGG | + | chr4_1:58508972-58508991 | Msa0559310:exon | 35.0% | |
| ATAAGCCATATGCTTGACAT+GGG | + | chr4_1:58508973-58508992 | Msa0559310:exon | 35.0% | |
| TCAGTGTCCCTTAAAATAGA+AGG | - | chr4_1:58509042-58509061 | None:intergenic | 35.0% | |
| !! | ATTTTAAGGGACACTGAAGA+TGG | + | chr4_1:58509045-58509064 | Msa0559310:CDS | 35.0% |
| ATGACATGCATGTAATCTGT+TGG | - | chr4_1:58509244-58509263 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | + | chr4_1:58509256-58509275 | Msa0559310:CDS | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | - | chr4_1:58509302-58509321 | None:intergenic | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | + | chr4_1:58509339-58509358 | Msa0559310:intron | 35.0% | |
| TTAAATTGCACTCGTGTATG+TGG | + | chr4_1:58509411-58509430 | Msa0559310:intron | 35.0% | |
| !!! | CGCTGCGAAATTTTTTTTGT+TGG | + | chr4_1:58509437-58509456 | Msa0559310:intron | 35.0% |
| GATTGATGCAGTCAAATTTG+CGG | + | chr4_1:58509467-58509486 | Msa0559310:intron | 35.0% | |
| !!! | GAATTTTGAAGTCTCTGTCA+CGG | - | chr4_1:58509501-58509520 | None:intergenic | 35.0% |
| AAAGCATATAGAACCGAAGA+TGG | + | chr4_1:58509761-58509780 | Msa0559310:intron | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | + | chr4_1:58509762-58509781 | Msa0559310:intron | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | + | chr4_1:58509898-58509917 | Msa0559310:CDS | 35.0% | |
| TATTTCCTCTTATCTCTCTG+TGG | + | chr4_1:58509925-58509944 | Msa0559310:intron | 35.0% | |
| CATTGCGATCTTTCATATTG+TGG | + | chr4_1:58510003-58510022 | Msa0559310:intron | 35.0% | |
| AGACAGATGTAGCTTCAATT+AGG | + | chr4_1:58510034-58510053 | Msa0559310:intron | 35.0% | |
| GACAGATGTAGCTTCAATTA+GGG | + | chr4_1:58510035-58510054 | Msa0559310:intron | 35.0% | |
| TTATGTTGTGGCCATAATAG+TGG | + | chr4_1:58510092-58510111 | Msa0559310:intron | 35.0% | |
| AGGAGGACTAAACTTAAAAG+TGG | + | chr4_1:58510467-58510486 | Msa0559310:CDS | 35.0% | |
| AGGACTAAACTTAAAAGTGG+AGG | + | chr4_1:58510470-58510489 | Msa0559310:CDS | 35.0% | |
| ATCATTATTGCCATGCTTAC+CGG | - | chr4_1:58510564-58510583 | None:intergenic | 35.0% | |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | + | chr4_1:58510651-58510670 | Msa0559310:intron | 35.0% |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | + | chr4_1:58510652-58510671 | Msa0559310:intron | 35.0% |
| CAAGACATCAGAAAATCCAT+TGG | - | chr4_1:58510822-58510841 | None:intergenic | 35.0% | |
| AGCAACTGGAAACAATATTG+AGG | + | chr4_1:58510853-58510872 | Msa0559310:CDS | 35.0% | |
| AACTGGAAACAATATTGAGG+AGG | + | chr4_1:58510856-58510875 | Msa0559310:CDS | 35.0% | |
| AATCTTGTTGGATCTTGTGT+TGG | + | chr4_1:58511031-58511050 | Msa0559310:intron | 35.0% | |
| ATCTTGTTGGATCTTGTGTT+GGG | + | chr4_1:58511032-58511051 | Msa0559310:intron | 35.0% | |
| AGTCATCTTCATCATCTTCT+TGG | - | chr4_1:58511078-58511097 | None:intergenic | 35.0% | |
| ATCGAACCTAAAGGTTAGTA+TGG | - | chr4_1:58511226-58511245 | None:intergenic | 35.0% | |
| CAATATACAGTTATTGGTGG+GGG | - | chr4_1:58511252-58511271 | None:intergenic | 35.0% | |
| CCAATATACAGTTATTGGTG+GGG | - | chr4_1:58511253-58511272 | None:intergenic | 35.0% | |
| CTCATGCATTAGAGAATTGA+TGG | + | chr4_1:58511396-58511415 | Msa0559310:intron | 35.0% | |
| AGAACAACAACACACAACTT+TGG | - | chr4_1:58511479-58511498 | None:intergenic | 35.0% | |
| ! | TTTGTCATTTGGGCATTAGT+TGG | - | chr4_1:58511512-58511531 | None:intergenic | 35.0% |
| ! | ATTAAGCACCATTTTGCCAA+AGG | + | chr4_1:58511604-58511623 | Msa0559310:intron | 35.0% |
| GATCATAACCTTTGGCAAAA+TGG | - | chr4_1:58511615-58511634 | None:intergenic | 35.0% | |
| TCACATTTGAACCAATGCTA+AGG | + | chr4_1:58511637-58511656 | Msa0559310:intron | 35.0% | |
| TGCTTAATGAACCTTAGCAT+TGG | - | chr4_1:58511651-58511670 | None:intergenic | 35.0% | |
| ACATTAGAACCTTTGGCAAA+GGG | - | chr4_1:58511675-58511694 | None:intergenic | 35.0% | |
| TACATTAGAACCTTTGGCAA+AGG | - | chr4_1:58511676-58511695 | None:intergenic | 35.0% | |
| AATTCCATGCCTTCAGATAA+TGG | + | chr4_1:58511809-58511828 | Msa0559310:intron | 35.0% | |
| TCATTCCCAAATAGTATGGT+AGG | + | chr4_1:58511875-58511894 | Msa0559310:intron | 35.0% | |
| ACCTATGTGAGAATGAAGTT+TGG | - | chr4_1:58512067-58512086 | None:intergenic | 35.0% | |
| CTCACATAGGTAGACTATAT+CGG | + | chr4_1:58512076-58512095 | Msa0559310:intron | 35.0% | |
| TCACATAGGTAGACTATATC+GGG | + | chr4_1:58512077-58512096 | Msa0559310:intron | 35.0% | |
| TTGCTGGAATGCATACTTAT+GGG | - | chr4_1:58512108-58512127 | None:intergenic | 35.0% | |
| TTTGCTGGAATGCATACTTA+TGG | - | chr4_1:58512109-58512128 | None:intergenic | 35.0% | |
| ! | TCCTACCCTTTTTCTTCTTA+TGG | + | chr4_1:58512163-58512182 | Msa0559310:intron | 35.0% |
| ACCATAAGAAGAAAAAGGGT+AGG | - | chr4_1:58512167-58512186 | None:intergenic | 35.0% | |
| CTTGGACCATAAGAAGAAAA+AGG | - | chr4_1:58512172-58512191 | None:intergenic | 35.0% | |
| ACAATAGATAACATCCCAAG+GGG | - | chr4_1:58512203-58512222 | None:intergenic | 35.0% | |
| GACAATAGATAACATCCCAA+GGG | - | chr4_1:58512204-58512223 | None:intergenic | 35.0% | |
| TGACAATAGATAACATCCCA+AGG | - | chr4_1:58512205-58512224 | None:intergenic | 35.0% | |
| TGAAGACATTATTAGGGATG+TGG | - | chr4_1:58512339-58512358 | None:intergenic | 35.0% | |
| TTGACAAGGAATGATGTCTT+TGG | - | chr4_1:58512380-58512399 | None:intergenic | 35.0% | |
| ! | TGTCATGGTTTGATGATAGT+TGG | - | chr4_1:58512532-58512551 | None:intergenic | 35.0% |
| ! | CAATTGACAAAAGTGTGTCA+TGG | - | chr4_1:58512547-58512566 | None:intergenic | 35.0% |
| CACAAGATCCAACAATCTTT+AGG | - | chr4_1:58513639-58513658 | None:intergenic | 35.0% | |
| AAGATTGTTGGATCTTGTGT+TGG | + | chr4_1:58513640-58513659 | Msa0559310:intron | 35.0% | |
| AGATTGTTGGATCTTGTGTT+GGG | + | chr4_1:58513641-58513660 | Msa0559310:intron | 35.0% | |
| AGTCATCTTCATCATCTTCT+TGG | - | chr4_1:58511078-58511097 | None:intergenic | 35.0% | |
| ATCGAACCTAAAGGTTAGTA+TGG | - | chr4_1:58511226-58511245 | None:intergenic | 35.0% | |
| CAATATACAGTTATTGGTGG+GGG | - | chr4_1:58511252-58511271 | None:intergenic | 35.0% | |
| CCAATATACAGTTATTGGTG+GGG | - | chr4_1:58511253-58511272 | None:intergenic | 35.0% | |
| CTCATGCATTAGAGAATTGA+TGG | + | chr4_1:58511396-58511415 | Msa0559310:intron | 35.0% | |
| AGAACAACAACACACAACTT+TGG | - | chr4_1:58511479-58511498 | None:intergenic | 35.0% | |
| ! | TTTGTCATTTGGGCATTAGT+TGG | - | chr4_1:58511512-58511531 | None:intergenic | 35.0% |
| ! | ATTAAGCACCATTTTGCCAA+AGG | + | chr4_1:58511604-58511623 | Msa0559310:intron | 35.0% |
| GATCATAACCTTTGGCAAAA+TGG | - | chr4_1:58511615-58511634 | None:intergenic | 35.0% | |
| TCACATTTGAACCAATGCTA+AGG | + | chr4_1:58511637-58511656 | Msa0559310:intron | 35.0% | |
| TGCTTAATGAACCTTAGCAT+TGG | - | chr4_1:58511651-58511670 | None:intergenic | 35.0% | |
| ACATTAGAACCTTTGGCAAA+GGG | - | chr4_1:58511675-58511694 | None:intergenic | 35.0% | |
| TACATTAGAACCTTTGGCAA+AGG | - | chr4_1:58511676-58511695 | None:intergenic | 35.0% | |
| GGAAAATGATATCTTCACTC+CGG | + | chr4_1:58514387-58514406 | Msa0559310:intron | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | - | chr4_1:58514409-58514428 | None:intergenic | 35.0% | |
| !! | ATAGACATCGCCATTGATTT+GGG | + | chr4_1:58514454-58514473 | Msa0559310:intron | 35.0% |
| AATAATGGCAAACATTGGGA+GGG | - | chr4_1:58514499-58514518 | None:intergenic | 35.0% | |
| AAATAATGGCAAACATTGGG+AGG | - | chr4_1:58514500-58514519 | None:intergenic | 35.0% | |
| TGTTGCATCTGTAACACATA+AGG | + | chr4_1:58514684-58514703 | Msa0559310:CDS | 35.0% | |
| CTGTAACACATAAGGAAACA+AGG | + | chr4_1:58514692-58514711 | Msa0559310:CDS | 35.0% | |
| TGCAGAGCTGAATATAAAAC+AGG | + | chr4_1:58514854-58514873 | Msa0559310:intron | 35.0% | |
| TGAAAAACTACGAGGAATAC+TGG | + | chr4_1:58514892-58514911 | Msa0559310:CDS | 35.0% | |
| ! | ATACTGGTTGGAATACAAAC+AGG | + | chr4_1:58514908-58514927 | Msa0559310:CDS | 35.0% |
| ! | TACTGGTTGGAATACAAACA+GGG | + | chr4_1:58514909-58514928 | Msa0559310:CDS | 35.0% |
| GTATTGAGGACAAAAAGTCA+TGG | + | chr4_1:58514933-58514952 | Msa0559310:CDS | 35.0% | |
| GTCCAAGTAGATTGAGAAAT+TGG | + | chr4_1:58514959-58514978 | Msa0559310:exon | 35.0% | |
| TGCCAATTTCTCAATCTACT+TGG | - | chr4_1:58514964-58514983 | None:intergenic | 35.0% | |
| GATTTCAGTTGCAAACATAC+AGG | + | chr4_1:58515047-58515066 | Msa0559310:three_prime_UTR | 35.0% | |
| GAAAACCCATGTCAAGCATA+TGG | - | chr4_1:58508981-58509000 | None:intergenic | 40.0% | |
| ! | ACATGGGTTTTCAATGCAGA+AGG | + | chr4_1:58508989-58509008 | Msa0559310:CDS | 40.0% |
| TAAAATAGAAGGAGGAGCCA+TGG | - | chr4_1:58509031-58509050 | None:intergenic | 40.0% | |
| ! | TGGCTCCTCCTTCTATTTTA+AGG | + | chr4_1:58509031-58509050 | Msa0559310:CDS | 40.0% |
| !! | GGCTCCTCCTTCTATTTTAA+GGG | + | chr4_1:58509032-58509051 | Msa0559310:CDS | 40.0% |
| GTGTCCCTTAAAATAGAAGG+AGG | - | chr4_1:58509039-58509058 | None:intergenic | 40.0% | |
| ACACTGAAGATGGTTCTCAA+AGG | + | chr4_1:58509055-58509074 | Msa0559310:CDS | 40.0% | |
| TATGCTGACATCAATTGGGA+AGG | + | chr4_1:58509199-58509218 | Msa0559310:CDS | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | - | chr4_1:58509303-58509322 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | + | chr4_1:58509312-58509331 | Msa0559310:CDS | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | - | chr4_1:58509334-58509353 | None:intergenic | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | + | chr4_1:58509334-58509353 | Msa0559310:intron | 40.0% | |
| AATGCTCTACGCATGAAGAT+GGG | + | chr4_1:58509812-58509831 | Msa0559310:CDS | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | + | chr4_1:58509897-58509916 | Msa0559310:CDS | 40.0% | |
| AAAGACCACAGAGAGATAAG+AGG | - | chr4_1:58509933-58509952 | None:intergenic | 40.0% | |
| !! | TCATGCATGGTTTTACGTTG+CGG | + | chr4_1:58509967-58509986 | Msa0559310:intron | 40.0% |
| TATCTTAGGCCTTTGCTGAT+AGG | + | chr4_1:58510240-58510259 | Msa0559310:CDS | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | - | chr4_1:58510291-58510310 | None:intergenic | 40.0% | |
| ! | GAGTGTTACTAATTATGCCC+CGG | + | chr4_1:58510542-58510561 | Msa0559310:CDS | 40.0% |
| TCATTATTGCCATGCTTACC+GGG | - | chr4_1:58510563-58510582 | None:intergenic | 40.0% | |
| ! | CTTTTCACAAGTCACAACCA+AGG | - | chr4_1:58510648-58510667 | None:intergenic | 40.0% |
| GTAACTGAAGCAAAAGCCAA+TGG | + | chr4_1:58510803-58510822 | Msa0559310:CDS | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | + | chr4_1:58510839-58510858 | Msa0559310:CDS | 40.0% | |
| TCTTGTTGGATCTTGTGTTG+GGG | + | chr4_1:58511033-58511052 | Msa0559310:intron | 40.0% | |
| CATGCAAACTCAAAGCGTAT+GGG | + | chr4_1:58511196-58511215 | Msa0559310:intron | 40.0% | |
| ATGCAAACTCAAAGCGTATG+GGG | + | chr4_1:58511197-58511216 | Msa0559310:intron | 40.0% | |
| CCCCACCAATAACTGTATAT+TGG | + | chr4_1:58511250-58511269 | Msa0559310:intron | 40.0% | |
| TGGATGCAATAAGGAATGAC+CGG | + | chr4_1:58511270-58511289 | Msa0559310:intron | 40.0% | |
| GAACTCATAGTATCCTGAAG+GGG | - | chr4_1:58511301-58511320 | None:intergenic | 40.0% | |
| GGAACTCATAGTATCCTGAA+GGG | - | chr4_1:58511302-58511321 | None:intergenic | 40.0% | |
| AGGAACTCATAGTATCCTGA+AGG | - | chr4_1:58511303-58511322 | None:intergenic | 40.0% | |
| ATACTGTTAGGAGATACGCT+TGG | - | chr4_1:58511348-58511367 | None:intergenic | 40.0% | |
| CTAATGCATGAGTGAATTGC+TGG | - | chr4_1:58511388-58511407 | None:intergenic | 40.0% | |
| CATTAGAACCTTTGGCAAAG+GGG | - | chr4_1:58511674-58511693 | None:intergenic | 40.0% | |
| ! | ATCTGAAGGCATGGAATTTC+CGG | - | chr4_1:58511807-58511826 | None:intergenic | 40.0% |
| GATACCATTATCTGAAGGCA+TGG | - | chr4_1:58511816-58511835 | None:intergenic | 40.0% | |
| TCGCTCATTCCCAAATAGTA+TGG | + | chr4_1:58511871-58511890 | Msa0559310:intron | 40.0% | |
| GCTTGCCTACCATACTATTT+GGG | - | chr4_1:58511883-58511902 | None:intergenic | 40.0% | |
| AGCTTGCCTACCATACTATT+TGG | - | chr4_1:58511884-58511903 | None:intergenic | 40.0% | |
| GCCAAACTTCATTCTCACAT+AGG | + | chr4_1:58512063-58512082 | Msa0559310:intron | 40.0% | |
| TGCTGGAATGCATACTTATG+GGG | - | chr4_1:58512107-58512126 | None:intergenic | 40.0% | |
| ! | GGATGAGGTTTTCCTCTTAA+TGG | - | chr4_1:58512146-58512165 | None:intergenic | 40.0% |
| AGAAGAAAAAGGGTAGGATG+AGG | - | chr4_1:58512161-58512180 | None:intergenic | 40.0% | |
| CTTGAGTAGCATCAAGTCTT+GGG | - | chr4_1:58512268-58512287 | None:intergenic | 40.0% | |
| ACTTGAGTAGCATCAAGTCT+TGG | - | chr4_1:58512269-58512288 | None:intergenic | 40.0% | |
| ACTTGATGCTACTCAAGTGT+GGG | + | chr4_1:58512271-58512290 | Msa0559310:intron | 40.0% | |
| GATTGTTGGATCTTGTGTTG+GGG | + | chr4_1:58513642-58513661 | Msa0559310:intron | 40.0% | |
| ATTGTTGGATCTTGTGTTGG+GGG | + | chr4_1:58513643-58513662 | Msa0559310:intron | 40.0% | |
| CATGCAAACTCAAAGCGTAT+GGG | + | chr4_1:58511196-58511215 | Msa0559310:intron | 40.0% | |
| ATGCAAACTCAAAGCGTATG+GGG | + | chr4_1:58511197-58511216 | Msa0559310:intron | 40.0% | |
| CCCCACCAATAACTGTATAT+TGG | + | chr4_1:58511250-58511269 | Msa0559310:intron | 40.0% | |
| TGGATGCAATAAGGAATGAC+CGG | + | chr4_1:58511270-58511289 | Msa0559310:intron | 40.0% | |
| GAACTCATAGTATCCTGAAG+GGG | - | chr4_1:58511301-58511320 | None:intergenic | 40.0% | |
| GGAACTCATAGTATCCTGAA+GGG | - | chr4_1:58511302-58511321 | None:intergenic | 40.0% | |
| AGGAACTCATAGTATCCTGA+AGG | - | chr4_1:58511303-58511322 | None:intergenic | 40.0% | |
| ATACTGTTAGGAGATACGCT+TGG | - | chr4_1:58511348-58511367 | None:intergenic | 40.0% | |
| CTAATGCATGAGTGAATTGC+TGG | - | chr4_1:58511388-58511407 | None:intergenic | 40.0% | |
| CATTAGAACCTTTGGCAAAG+GGG | - | chr4_1:58511674-58511693 | None:intergenic | 40.0% | |
| ATAGATGGATCTATTCTGCC+TGG | + | chr4_1:58514412-58514431 | Msa0559310:intron | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | + | chr4_1:58514413-58514432 | Msa0559310:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | - | chr4_1:58514452-58514471 | None:intergenic | 40.0% | |
| ! | CATAGACATCGCCATTGATT+TGG | + | chr4_1:58514453-58514472 | Msa0559310:intron | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | + | chr4_1:58514462-58514481 | Msa0559310:intron | 40.0% |
| CATAGAACGTTCCATATCAG+TGG | + | chr4_1:58514603-58514622 | Msa0559310:CDS | 40.0% | |
| CATCATTTCCTCCACTGATA+TGG | - | chr4_1:58514617-58514636 | None:intergenic | 40.0% | |
| ATGTGTTACAGATGCAACAG+AGG | - | chr4_1:58514683-58514702 | None:intergenic | 40.0% | |
| ACGTTGTCTGAAAAACTACG+AGG | + | chr4_1:58514884-58514903 | Msa0559310:CDS | 40.0% | |
| AAACTACGAGGAATACTGGT+TGG | + | chr4_1:58514896-58514915 | Msa0559310:CDS | 40.0% | |
| AATACAAACAGGGCGTATTG+AGG | + | chr4_1:58514919-58514938 | Msa0559310:CDS | 40.0% | |
| AGTTGCAAACATACAGGTAG+AGG | + | chr4_1:58515053-58515072 | Msa0559310:three_prime_UTR | 40.0% | |
| GATCCCATTTCTCTCAACCA+TGG | + | chr4_1:58509011-58509030 | Msa0559310:CDS | 45.0% | |
| GAGCCATGGTTGAGAGAAAT+GGG | - | chr4_1:58509017-58509036 | None:intergenic | 45.0% | |
| AGTTTATGATACCAGCAGCC+GGG | - | chr4_1:58509333-58509352 | None:intergenic | 45.0% | |
| AAGAAGGATTCGCCCATCTT+CGG | - | chr4_1:58509777-58509796 | None:intergenic | 45.0% | |
| ! | AATCCTTCTTTTCCGACCAG+AGG | + | chr4_1:58509787-58509806 | Msa0559310:CDS | 45.0% |
| GAATGCTCTACGCATGAAGA+TGG | + | chr4_1:58509811-58509830 | Msa0559310:CDS | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | + | chr4_1:58509813-58509832 | Msa0559310:CDS | 45.0% | |
| TCAACAAACTGCTCAACCGA+TGG | - | chr4_1:58509863-58509882 | None:intergenic | 45.0% | |
| CAGTCTATCAGCTTCATGCA+TGG | + | chr4_1:58509954-58509973 | Msa0559310:intron | 45.0% | |
| GCGGTTCAGAACCACTATTA+TGG | - | chr4_1:58510106-58510125 | None:intergenic | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | + | chr4_1:58510226-58510245 | Msa0559310:CDS | 45.0% | |
| ATAGGAACAGGAGCTGCATT+AGG | + | chr4_1:58510258-58510277 | Msa0559310:CDS | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | + | chr4_1:58510309-58510328 | Msa0559310:CDS | 45.0% | |
| TAATTATGCCCCGGTAAGCA+TGG | + | chr4_1:58510551-58510570 | Msa0559310:intron | 45.0% | |
| CATTATTGCCATGCTTACCG+GGG | - | chr4_1:58510562-58510581 | None:intergenic | 45.0% | |
| CTTGTTGGATCTTGTGTTGG+GGG | + | chr4_1:58511034-58511053 | Msa0559310:intron | 45.0% | |
| GCATGCAAACTCAAAGCGTA+TGG | + | chr4_1:58511195-58511214 | Msa0559310:intron | 45.0% | |
| GGGTTGCCATACTAACCTTT+AGG | + | chr4_1:58511217-58511236 | Msa0559310:intron | 45.0% | |
| TGGTTGTGCAATACACGTCA+AGG | - | chr4_1:58511323-58511342 | None:intergenic | 45.0% | |
| GGTGCTTTCTCTCATGTGAA+GGG | - | chr4_1:58511556-58511575 | None:intergenic | 45.0% | |
| ATTAAGCACCCCTTTGCCAA+AGG | + | chr4_1:58511663-58511682 | Msa0559310:intron | 45.0% | |
| ! | TGAAAATGGTGGGGGATTGT+TGG | - | chr4_1:58511764-58511783 | None:intergenic | 45.0% |
| CGCGAGATACCATTATCTGA+AGG | - | chr4_1:58511821-58511840 | None:intergenic | 45.0% | |
| AATGAAGTTTGGCCGCTTCA+CGG | - | chr4_1:58512056-58512075 | None:intergenic | 45.0% | |
| ! | TCCAAGTACTTTTGCCCCTT+GGG | + | chr4_1:58512186-58512205 | Msa0559310:intron | 45.0% |
| GCATCAAGTCTTGGGTTCAA+TGG | - | chr4_1:58512260-58512279 | None:intergenic | 45.0% | |
| GACTTGATGCTACTCAAGTG+TGG | + | chr4_1:58512270-58512289 | Msa0559310:intron | 45.0% | |
| TTTACCGTTCACCGTAGTCA+TGG | + | chr4_1:58513546-58513565 | Msa0559310:intron | 45.0% | |
| TCATCCATGACTACGGTGAA+CGG | - | chr4_1:58513553-58513572 | None:intergenic | 45.0% | |
| GCATGCAAACTCAAAGCGTA+TGG | + | chr4_1:58511195-58511214 | Msa0559310:intron | 45.0% | |
| GGGTTGCCATACTAACCTTT+AGG | + | chr4_1:58511217-58511236 | Msa0559310:intron | 45.0% | |
| TGGTTGTGCAATACACGTCA+AGG | - | chr4_1:58511323-58511342 | None:intergenic | 45.0% | |
| GGTGCTTTCTCTCATGTGAA+GGG | - | chr4_1:58511556-58511575 | None:intergenic | 45.0% | |
| ATTAAGCACCCCTTTGCCAA+AGG | + | chr4_1:58511663-58511682 | Msa0559310:intron | 45.0% | |
| ATCTTCACTCCGGCAATAGA+TGG | + | chr4_1:58514397-58514416 | Msa0559310:intron | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | + | chr4_1:58514414-58514433 | Msa0559310:intron | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | + | chr4_1:58514606-58514625 | Msa0559310:CDS | 45.0% | |
| GTGTGTGAATCTGCTTTGTG+TGG | + | chr4_1:58515179-58515198 | Msa0559310:three_prime_UTR | 45.0% | |
| !!! | TTTTTTAAAAAAAAAAAAGA+AGG | - | chr4_1:58510436-58510455 | None:intergenic | 5.0% |
| !!! | TTTTTTTAAAAAAAAATAAC+AGG | + | chr4_1:58510443-58510462 | Msa0559310:intron | 5.0% |
| !!! | TTTTTTAAAAAAAAATAACA+GGG | + | chr4_1:58510444-58510463 | Msa0559310:intron | 5.0% |
| GGAGCCATGGTTGAGAGAAA+TGG | - | chr4_1:58509018-58509037 | None:intergenic | 50.0% | |
| CAAGGATCCCTCATTCGCTA+TGG | + | chr4_1:58509292-58509311 | Msa0559310:CDS | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | - | chr4_1:58509793-58509812 | None:intergenic | 50.0% | |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | - | chr4_1:58509802-58509821 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | - | chr4_1:58509806-58509825 | None:intergenic | 50.0% |
| TGCTCTACGCATGAAGATGG+GGG | + | chr4_1:58509814-58509833 | Msa0559310:CDS | 50.0% | |
| GTTGTGTATGCCGTCACCAT+CGG | + | chr4_1:58509844-58509863 | Msa0559310:CDS | 50.0% | |
| AACTGCTCAACCGATGGTGA+CGG | - | chr4_1:58509857-58509876 | None:intergenic | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | + | chr4_1:58510204-58510223 | Msa0559310:intron | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | + | chr4_1:58510205-58510224 | Msa0559310:intron | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | - | chr4_1:58510225-58510244 | None:intergenic | 50.0% |
| AGGCCTTTGCTGATAGGAAC+AGG | + | chr4_1:58510246-58510265 | Msa0559310:CDS | 50.0% | |
| GCTCCTGTTCCTATCAGCAA+AGG | - | chr4_1:58510252-58510271 | None:intergenic | 50.0% | |
| AACAGGAGCTGCATTAGGCT+TGG | + | chr4_1:58510263-58510282 | Msa0559310:CDS | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | - | chr4_1:58510325-58510344 | None:intergenic | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | - | chr4_1:58510326-58510345 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | - | chr4_1:58510327-58510346 | None:intergenic | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | + | chr4_1:58510501-58510520 | Msa0559310:CDS | 50.0% | |
| ! | GTTAGGAGATACGCTTGGTG+TGG | - | chr4_1:58511343-58511362 | None:intergenic | 50.0% |
| GGGTGCTTTCTCTCATGTGA+AGG | - | chr4_1:58511557-58511576 | None:intergenic | 50.0% | |
| AACCCTTGAACTCCGTGAAG+CGG | + | chr4_1:58512041-58512060 | Msa0559310:intron | 50.0% | |
| ! | GTCCAAGTACTTTTGCCCCT+TGG | + | chr4_1:58512185-58512204 | Msa0559310:intron | 50.0% |
| !! | TCCCAAGGGGCAAAAGTACT+TGG | - | chr4_1:58512190-58512209 | None:intergenic | 50.0% |
| ! | GTGGGTTGAGTTTCCACCAT+TGG | + | chr4_1:58512289-58512308 | Msa0559310:intron | 50.0% |
| ! | GTTAGGAGATACGCTTGGTG+TGG | - | chr4_1:58511343-58511362 | None:intergenic | 50.0% |
| GGGTGCTTTCTCTCATGTGA+AGG | - | chr4_1:58511557-58511576 | None:intergenic | 50.0% | |
| ! | ATGGATTTTCGTGTGACCCC+AGG | - | chr4_1:58514433-58514452 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | + | chr4_1:58514640-58514659 | Msa0559310:CDS | 50.0% |
| ATTGAGATAAGCCCGGCTGC+TGG | + | chr4_1:58509319-58509338 | Msa0559310:CDS | 55.0% | |
| GCATGAAGATGGGGGCTGAT+AGG | + | chr4_1:58509822-58509841 | Msa0559310:CDS | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | + | chr4_1:58510211-58510230 | Msa0559310:intron | 55.0% | |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | - | chr4_1:58510222-58510241 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | + | chr4_1:58510323-58510342 | Msa0559310:CDS | 55.0% |
| AAGTACCACGAGGTCAGCCA+TGG | + | chr4_1:58510333-58510352 | Msa0559310:intron | 55.0% | |
| CAAATCCATGGCTGACCTCG+TGG | - | chr4_1:58510341-58510360 | None:intergenic | 55.0% | |
| CACGAGGTCAGCCATGGATT+TGG | + | chr4_1:58510339-58510358 | Msa0559310:intron | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | + | chr4_1:58510504-58510523 | Msa0559310:CDS | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | + | chr4_1:58510510-58510529 | Msa0559310:CDS | 55.0% |
| TGGGGGCGAATCGAACCTAA+AGG | - | chr4_1:58511235-58511254 | None:intergenic | 55.0% | |
| GTATCCTGAAGGGGATTCGC+CGG | - | chr4_1:58511292-58511311 | None:intergenic | 55.0% | |
| TGGGGGCGAATCGAACCTAA+AGG | - | chr4_1:58511235-58511254 | None:intergenic | 55.0% | |
| GTATCCTGAAGGGGATTCGC+CGG | - | chr4_1:58511292-58511311 | None:intergenic | 55.0% | |
| GTTCTGCACAGGAACTGCAG+TGG | + | chr4_1:58514651-58514670 | Msa0559310:CDS | 55.0% | |
| CAGGTACCTCCTCCAGGGAA+AGG | + | chr4_1:58510210-58510229 | Msa0559310:intron | 60.0% | |
| ATGACCGGCGAATCCCCTTC+AGG | + | chr4_1:58511285-58511304 | Msa0559310:intron | 60.0% | |
| GGCCGCTTCACGGAGTTCAA+GGG | - | chr4_1:58512046-58512065 | None:intergenic | 60.0% | |
| TGGCCGCTTCACGGAGTTCA+AGG | - | chr4_1:58512047-58512066 | None:intergenic | 60.0% | |
| ATGACCGGCGAATCCCCTTC+AGG | + | chr4_1:58511285-58511304 | Msa0559310:intron | 60.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | - | chr4_1:58510219-58510238 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | + | chr4_1:58510513-58510532 | Msa0559310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58508822 | 58515244 | 58508822 | ID=Msa0559310;Name=Msa0559310 |
| chr4_1 | mRNA | 58508822 | 58515244 | 58508822 | ID=Msa0559310-mRNA-1;Parent=Msa0559310;Name=Msa0559310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=160|0.71|0.75|1|0.71|0.87|8|271|327 |
| chr4_1 | exon | 58508822 | 58509076 | 58508822 | ID=Msa0559310-mRNA-1:exon:17812;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58509183 | 58509340 | 58509183 | ID=Msa0559310-mRNA-1:exon:17813;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58509765 | 58509919 | 58509765 | ID=Msa0559310-mRNA-1:exon:17814;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58510213 | 58510344 | 58510213 | ID=Msa0559310-mRNA-1:exon:17815;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58510465 | 58510563 | 58510465 | ID=Msa0559310-mRNA-1:exon:17816;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58510791 | 58510907 | 58510791 | ID=Msa0559310-mRNA-1:exon:17817;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58514601 | 58514713 | 58514601 | ID=Msa0559310-mRNA-1:exon:17818;Parent=Msa0559310-mRNA-1 |
| chr4_1 | exon | 58514859 | 58515244 | 58514859 | ID=Msa0559310-mRNA-1:exon:17819;Parent=Msa0559310-mRNA-1 |
| chr4_1 | five_prime_UTR | 58508822 | 58508981 | 58508822 | ID=Msa0559310-mRNA-1:five_prime_utr;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58508982 | 58509076 | 58508982 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58509183 | 58509340 | 58509183 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58509765 | 58509919 | 58509765 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58510213 | 58510344 | 58510213 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58510465 | 58510563 | 58510465 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58510791 | 58510907 | 58510791 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58514601 | 58514713 | 58514601 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | CDS | 58514859 | 58514973 | 58514859 | ID=Msa0559310-mRNA-1:cds;Parent=Msa0559310-mRNA-1 |
| chr4_1 | three_prime_UTR | 58514974 | 58515244 | 58514974 | ID=Msa0559310-mRNA-1:three_prime_utr;Parent=Msa0559310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
