Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560050 | XP_024636942.1 | 89.542 | 153 | 14 | 2 | 1 | 152 | 62 | 213 | 5.79e-86 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560050 | sp|Q69TG5|MAD55_ORYSJ | 40.645 | 155 | 69 | 4 | 9 | 149 | 100 | 245 | 8.13e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560050 | G7JV76 | 89.542 | 153 | 14 | 2 | 1 | 152 | 88 | 239 | 1.84e-85 | 259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0560050 | Msa0638580 | 0.855749 | 5.118136e-62 | -8.615850e-47 |
| Msa0560050 | Msa0697270 | 0.862532 | 4.742781e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560050 | MtrunA17_Chr4g0049901 | 89.542 | 153 | 14 | 2 | 1 | 152 | 88 | 239 | 3.55e-89 | 259 |
| Msa0560050 | MtrunA17_Chr5g0412461 | 41.212 | 165 | 81 | 3 | 1 | 150 | 62 | 225 | 2.11e-28 | 104 |
| Msa0560050 | MtrunA17_Chr5g0412271 | 42.169 | 166 | 79 | 3 | 1 | 150 | 62 | 226 | 2.50e-27 | 101 |
| Msa0560050 | MtrunA17_Chr5g0427401 | 35.152 | 165 | 89 | 4 | 1 | 150 | 62 | 223 | 8.34e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560050 | AT4G24540.1 | 39.241 | 158 | 85 | 4 | 1 | 149 | 62 | 217 | 4.25e-21 | 85.9 |
| Msa0560050 | AT2G22540.2 | 35.955 | 178 | 85 | 4 | 1 | 150 | 57 | 233 | 1.78e-20 | 84.3 |
| Msa0560050 | AT2G22540.3 | 35.955 | 178 | 85 | 4 | 1 | 150 | 62 | 238 | 2.27e-20 | 84.3 |
| Msa0560050 | AT2G22540.1 | 35.955 | 178 | 85 | 4 | 1 | 150 | 62 | 238 | 2.27e-20 | 84.3 |
Find 44 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGAACAAACCTTTATTT+TGG | 0.154101 | 4_1:+59269452 | None:intergenic |
| AATCATTGGAATCTGTTATT+AGG | 0.154695 | 4_1:-59268280 | Msa0560050:CDS |
| TAAGAAGCGCCTCTAGTTTC+TGG | 0.185828 | 4_1:+59269496 | None:intergenic |
| TATACGATATGGTATGTTTA+TGG | 0.191406 | 4_1:-59267238 | Msa0560050:three_prime_UTR |
| GACAGTATTGCTTCCTTTCT+AGG | 0.249592 | 4_1:-59267439 | Msa0560050:three_prime_UTR |
| TTCAGCAAATCACAGATTAT+TGG | 0.255559 | 4_1:-59269922 | Msa0560050:CDS |
| ATCATTGGAATCTGTTATTA+GGG | 0.269501 | 4_1:-59268279 | Msa0560050:CDS |
| TTTATTTACCTTTCTCTTAA+GGG | 0.290713 | 4_1:+59269276 | None:intergenic |
| GTCCCCATCGTCCATTTATA+AGG | 0.311501 | 4_1:+59268303 | None:intergenic |
| GTCTAGTGTTTCCAAAATAA+AGG | 0.316806 | 4_1:-59269463 | Msa0560050:intron |
| AGTGACACTTCTCTCAAGTT+GGG | 0.338517 | 4_1:-59268224 | Msa0560050:CDS |
| CCAAGTTGATGTATACGATA+TGG | 0.348378 | 4_1:-59267249 | Msa0560050:three_prime_UTR |
| TAGGTACCAGACCTTATAAA+TGG | 0.357027 | 4_1:-59268314 | Msa0560050:CDS |
| CTCTCCTTCTCACAGTCCTC+TGG | 0.374200 | 4_1:+59267462 | None:intergenic |
| TTACCACATGTTTCAATCTT+CGG | 0.404641 | 4_1:+59268435 | None:intergenic |
| TGGACGATGGGGACAATCAT+TGG | 0.410576 | 4_1:-59268294 | Msa0560050:CDS |
| GGTTAAGGAAAATGAGGCCT+TGG | 0.425253 | 4_1:-59267352 | Msa0560050:three_prime_UTR |
| CCATATCGTATACATCAACT+TGG | 0.431123 | 4_1:+59267249 | None:intergenic |
| TAAATGTAAAGTAATAGATA+TGG | 0.444147 | 4_1:-59267373 | Msa0560050:three_prime_UTR |
| TAAAGTAATAGATATGGTTA+AGG | 0.446785 | 4_1:-59267367 | Msa0560050:three_prime_UTR |
| CAAGTAATTGAAAGGCGTAA+TGG | 0.461408 | 4_1:-59269948 | Msa0560050:CDS |
| CAGTGACACTTCTCTCAAGT+TGG | 0.471667 | 4_1:-59268225 | Msa0560050:CDS |
| CATCGTCCATTTATAAGGTC+TGG | 0.478047 | 4_1:+59268308 | None:intergenic |
| CTTCAACACAGGCAATTGAA+TGG | 0.479094 | 4_1:-59269552 | Msa0560050:intron |
| GGTTGATCATCGACCTAGAA+AGG | 0.492292 | 4_1:+59267426 | None:intergenic |
| TCCATCTACTGATCAGCATC+AGG | 0.502328 | 4_1:-59269895 | Msa0560050:intron |
| ACCTGATGCTGATCAGTAGA+TGG | 0.515028 | 4_1:+59269894 | None:intergenic |
| CATCGACACCCTTAAGAGAA+AGG | 0.526872 | 4_1:-59269284 | Msa0560050:intron |
| CAGAGGACTGTGAGAAGGAG+AGG | 0.553386 | 4_1:-59267461 | Msa0560050:three_prime_UTR |
| AGATATGGTTAAGGAAAATG+AGG | 0.554813 | 4_1:-59267358 | Msa0560050:three_prime_UTR |
| AGACCTTATAAATGGACGAT+GGG | 0.561354 | 4_1:-59268306 | Msa0560050:CDS |
| ATAAATAAAATTTCATCCAG+AGG | 0.569103 | 4_1:-59267478 | Msa0560050:exon |
| GTATGGAACAAGTAATTGAA+AGG | 0.588861 | 4_1:-59269956 | Msa0560050:CDS |
| GTGACACTTCTCTCAAGTTG+GGG | 0.597855 | 4_1:-59268223 | Msa0560050:intron |
| TCATCCAGAGGACTGTGAGA+AGG | 0.602265 | 4_1:-59267466 | Msa0560050:three_prime_UTR |
| ATATATGTAAACACTTTCTG+TGG | 0.627647 | 4_1:+59267274 | None:intergenic |
| CATATCGTATACATCAACTT+GGG | 0.647453 | 4_1:+59267250 | None:intergenic |
| CAGACCTTATAAATGGACGA+TGG | 0.661139 | 4_1:-59268307 | Msa0560050:CDS |
| GAACTACAGTTATACAACCA+AGG | 0.666830 | 4_1:+59267335 | None:intergenic |
| AAGATAAATCTCGTGAACTG+AGG | 0.669525 | 4_1:-59269661 | Msa0560050:intron |
| AAACCGAAGATTGAAACATG+TGG | 0.671175 | 4_1:-59268438 | Msa0560050:intron |
| GATGCTGATCAGTAGATGGA+TGG | 0.683415 | 4_1:+59269898 | None:intergenic |
| AGAAGAACTCCAGAAACTAG+AGG | 0.688411 | 4_1:-59269505 | Msa0560050:CDS |
| GACCTTATAAATGGACGATG+GGG | 0.689950 | 4_1:-59268305 | Msa0560050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATGTTAAATATAAAATAA+AGG | - | chr4_1:59268412-59268431 | Msa0560050:intron | 10.0% |
| !! | TATGAATTAATTAAATTTGA+GGG | + | chr4_1:59269141-59269160 | None:intergenic | 10.0% |
| !! | CTTTATATTAATTAATTCAT+AGG | - | chr4_1:59269168-59269187 | Msa0560050:intron | 10.0% |
| !!! | TTTTTTATACTATTTTTTTG+GGG | + | chr4_1:59269331-59269350 | None:intergenic | 10.0% |
| !!! | CATTTTTTATACTATTTTTT+TGG | + | chr4_1:59269333-59269352 | None:intergenic | 10.0% |
| !! | AAAAAATAGTATAAAAAATG+TGG | - | chr4_1:59269333-59269352 | Msa0560050:intron | 10.0% |
| !!! | ACTTTTTTTTTTTTTTATAC+TGG | + | chr4_1:59269803-59269822 | None:intergenic | 10.0% |
| !! | TTTGTTGGTATAATTTATAA+AGG | - | chr4_1:59267984-59268003 | Msa0560050:intron | 15.0% |
| !!! | ATTTTTAGACAAAAAAGTTA+AGG | - | chr4_1:59268051-59268070 | Msa0560050:intron | 15.0% |
| !!! | ATTTTGAATGTTTAAGATTT+AGG | - | chr4_1:59268469-59268488 | Msa0560050:intron | 15.0% |
| !!! | TTTTGAATGTTTAAGATTTA+GGG | - | chr4_1:59268470-59268489 | Msa0560050:intron | 15.0% |
| !! | ATTCTAAATGTCTATTTATT+GGG | + | chr4_1:59268558-59268577 | None:intergenic | 15.0% |
| !! | TATTCTAAATGTCTATTTAT+TGG | + | chr4_1:59268559-59268578 | None:intergenic | 15.0% |
| !! | AATGTATAATTAAGAATTGA+GGG | + | chr4_1:59269088-59269107 | None:intergenic | 15.0% |
| !! | AAATGTATAATTAAGAATTG+AGG | + | chr4_1:59269089-59269108 | None:intergenic | 15.0% |
| !! | ATGAATTAATTAAATTTGAG+GGG | + | chr4_1:59269140-59269159 | None:intergenic | 15.0% |
| !! | CTATGAATTAATTAAATTTG+AGG | + | chr4_1:59269142-59269161 | None:intergenic | 15.0% |
| !!! | TTTTTTATACTGGATTTAAT+TGG | + | chr4_1:59269793-59269812 | None:intergenic | 15.0% |
| !! | TAAATGTAAAGTAATAGATA+TGG | - | chr4_1:59269822-59269841 | Msa0560050:intron | 15.0% |
| !! | TTTATTTACCTTTCTCTTAA+GGG | + | chr4_1:59267922-59267941 | None:intergenic | 20.0% |
| !!! | TTTTATTTACCTTTCTCTTA+AGG | + | chr4_1:59267923-59267942 | None:intergenic | 20.0% |
| !!! | TGATTTTTAAAAAGTATGAG+AGG | + | chr4_1:59267960-59267979 | None:intergenic | 20.0% |
| !! | TTTAAAAATCACATCTTTGT+TGG | - | chr4_1:59267969-59267988 | Msa0560050:intron | 20.0% |
| !!! | TCATTCAATTTTATTTGACA+CGG | - | chr4_1:59268636-59268655 | Msa0560050:intron | 20.0% |
| !! | TACAATTTGCCATATATATA+TGG | - | chr4_1:59268809-59268828 | Msa0560050:intron | 20.0% |
| !! | ACAATTTGCCATATATATAT+GGG | - | chr4_1:59268810-59268829 | Msa0560050:intron | 20.0% |
| !! | ATGTATAATTAAGAATTGAG+GGG | + | chr4_1:59269087-59269106 | None:intergenic | 20.0% |
| !!! | ATCTCTCAAAAATTTAAGTT+GGG | - | chr4_1:59269555-59269574 | Msa0560050:intron | 20.0% |
| !! | ATAAATAAAATTTCATCCAG+AGG | - | chr4_1:59269717-59269736 | Msa0560050:intron | 20.0% |
| !! | TAAAGTAATAGATATGGTTA+AGG | - | chr4_1:59269828-59269847 | Msa0560050:intron | 20.0% |
| !!! | CAATTTGTTCTATTTTCTTT+TGG | - | chr4_1:59269889-59269908 | Msa0560050:intron | 20.0% |
| ! | CTAAAATTCCAAATCAAAAG+GGG | + | chr4_1:59267379-59267398 | None:intergenic | 25.0% |
| ! | GCTAAAATTCCAAATCAAAA+GGG | + | chr4_1:59267380-59267399 | None:intergenic | 25.0% |
| ! | TGCTAAAATTCCAAATCAAA+AGG | + | chr4_1:59267381-59267400 | None:intergenic | 25.0% |
| !!! | AAAAAGGAATGCAACTTTTT+TGG | - | chr4_1:59267454-59267473 | Msa0560050:three_prime_UTR | 25.0% |
| !!! | TTTTTTGGACCTTTATTTAC+AGG | - | chr4_1:59267469-59267488 | Msa0560050:three_prime_UTR | 25.0% |
| ! | GTATATATATGCACCTAATT+AGG | + | chr4_1:59267581-59267600 | None:intergenic | 25.0% |
| ! | AATACTGAAATCTTCTCATT+TGG | - | chr4_1:59267798-59267817 | Msa0560050:intron | 25.0% |
| ! | ATAAGATATACTGATGTTTC+AGG | - | chr4_1:59267869-59267888 | Msa0560050:intron | 25.0% |
| !!! | TAAAAAGTATGAGAGGTTTT+TGG | + | chr4_1:59267953-59267972 | None:intergenic | 25.0% |
| ! | TGGTATAATTTATAAAGGTC+TGG | - | chr4_1:59267989-59268008 | Msa0560050:intron | 25.0% |
| !! | AATATTTTTCCTCCTTATCA+GGG | + | chr4_1:59268167-59268186 | None:intergenic | 25.0% |
| !! | GGAAAAATATTCTCCAATTT+TGG | - | chr4_1:59268176-59268195 | Msa0560050:intron | 25.0% |
| ! | AGAAACAAAAGAAGTTAACA+TGG | + | chr4_1:59268208-59268227 | None:intergenic | 25.0% |
| ! | TTTGATTATATTTACCACAC+AGG | - | chr4_1:59268715-59268734 | Msa0560050:intron | 25.0% |
| ! | TTTATCGACCCATATATATA+TGG | + | chr4_1:59268821-59268840 | None:intergenic | 25.0% |
| !! | ATGGAATACATGTGAATTTT+AGG | - | chr4_1:59268862-59268881 | Msa0560050:intron | 25.0% |
| ! | AATCATTGGAATCTGTTATT+AGG | - | chr4_1:59268915-59268934 | Msa0560050:intron | 25.0% |
| ! | ATCATTGGAATCTGTTATTA+GGG | - | chr4_1:59268916-59268935 | Msa0560050:intron | 25.0% |
| ! | AAGCATTACATGATAGTTAA+AGG | + | chr4_1:59269010-59269029 | None:intergenic | 25.0% |
| ! | TGTATAATTAAGAATTGAGG+GGG | + | chr4_1:59269086-59269105 | None:intergenic | 25.0% |
| ! | GTATAAAAAATGTGGATCAA+CGG | - | chr4_1:59269341-59269360 | Msa0560050:intron | 25.0% |
| ! | TATAAAAAATGTGGATCAAC+GGG | - | chr4_1:59269342-59269361 | Msa0560050:intron | 25.0% |
| ! | CTAGTATTATATATCACTAG+CGG | + | chr4_1:59269385-59269404 | None:intergenic | 25.0% |
| ! | TTAGATACCTTCATTAACAA+TGG | + | chr4_1:59269524-59269543 | None:intergenic | 25.0% |
| ! | CATCTCTCAAAAATTTAAGT+TGG | - | chr4_1:59269554-59269573 | Msa0560050:intron | 25.0% |
| !! | AGAAACAGAAAAATTTTCTG+AGG | + | chr4_1:59269632-59269651 | None:intergenic | 25.0% |
| ! | ATATATGTAAACACTTTCTG+TGG | + | chr4_1:59269924-59269943 | None:intergenic | 25.0% |
| ! | TATACGATATGGTATGTTTA+TGG | - | chr4_1:59269957-59269976 | Msa0560050:CDS | 25.0% |
| !! | ATCATTGCTTGTTTTCAGTA+TGG | - | chr4_1:59267222-59267241 | Msa0560050:three_prime_UTR | 30.0% |
| GTATGGAACAAGTAATTGAA+AGG | - | chr4_1:59267239-59267258 | Msa0560050:three_prime_UTR | 30.0% | |
| TTCAGCAAATCACAGATTAT+TGG | - | chr4_1:59267273-59267292 | Msa0560050:three_prime_UTR | 30.0% | |
| GATTGTGGTTGACATTAATT+TGG | - | chr4_1:59267424-59267443 | Msa0560050:three_prime_UTR | 30.0% | |
| ! | TTAATTTGGTAGCCACAAAA+AGG | - | chr4_1:59267438-59267457 | Msa0560050:three_prime_UTR | 30.0% |
| ! | AAAAGTTGCATTCCTTTTTG+TGG | + | chr4_1:59267453-59267472 | None:intergenic | 30.0% |
| ! | GAGTACTTTTAGTCCTAATT+AGG | - | chr4_1:59267565-59267584 | Msa0560050:intron | 30.0% |
| GTCTAGTGTTTCCAAAATAA+AGG | - | chr4_1:59267732-59267751 | Msa0560050:intron | 30.0% | |
| ! | GAATATTTTTCCTCCTTATC+AGG | + | chr4_1:59268168-59268187 | None:intergenic | 30.0% |
| AACATGGAAAACTCCAAAAT+TGG | + | chr4_1:59268192-59268211 | None:intergenic | 30.0% | |
| ATTGTTAGATAAGACAGCAT+GGG | + | chr4_1:59268237-59268256 | None:intergenic | 30.0% | |
| TATTGTTAGATAAGACAGCA+TGG | + | chr4_1:59268238-59268257 | None:intergenic | 30.0% | |
| AGTGAGTGTAATTGACTAAT+TGG | - | chr4_1:59268368-59268387 | Msa0560050:intron | 30.0% | |
| ! | TGAATGTTTAAGATTTAGGG+TGG | - | chr4_1:59268473-59268492 | Msa0560050:intron | 30.0% |
| GATACATTGTCTTGATCTTT+CGG | - | chr4_1:59268495-59268514 | Msa0560050:intron | 30.0% | |
| ! | GACATTTAGAATAAATGCAG+TGG | - | chr4_1:59268566-59268585 | Msa0560050:intron | 30.0% |
| ! | ATTTAGAATAAATGCAGTGG+TGG | - | chr4_1:59268569-59268588 | Msa0560050:intron | 30.0% |
| TTACCACATGTTTCAATCTT+CGG | + | chr4_1:59268763-59268782 | None:intergenic | 30.0% | |
| TATATATCACTAGCGGAAAT+CGG | + | chr4_1:59269378-59269397 | None:intergenic | 30.0% | |
| AGATATGGTTAAGGAAAATG+AGG | - | chr4_1:59269837-59269856 | Msa0560050:intron | 30.0% | |
| CATATCGTATACATCAACTT+GGG | + | chr4_1:59269948-59269967 | None:intergenic | 30.0% | |
| ! | CAAGTAATTGAAAGGCGTAA+TGG | - | chr4_1:59267247-59267266 | Msa0560050:three_prime_UTR | 35.0% |
| !! | GATGAAAACCCCTTTTGATT+TGG | - | chr4_1:59267368-59267387 | Msa0560050:three_prime_UTR | 35.0% |
| CTAGTTATTCTGCATGATTG+TGG | - | chr4_1:59267409-59267428 | Msa0560050:three_prime_UTR | 35.0% | |
| AAGATAAATCTCGTGAACTG+AGG | - | chr4_1:59267534-59267553 | Msa0560050:intron | 35.0% | |
| !! | TGGGGAACAAACCTTTATTT+TGG | + | chr4_1:59267746-59267765 | None:intergenic | 35.0% |
| ATTAGTGCACGATTAATCTG+GGG | + | chr4_1:59267764-59267783 | None:intergenic | 35.0% | |
| GATTAGTGCACGATTAATCT+GGG | + | chr4_1:59267765-59267784 | None:intergenic | 35.0% | |
| AGATTAGTGCACGATTAATC+TGG | + | chr4_1:59267766-59267785 | None:intergenic | 35.0% | |
| AATCTTCTCATTTGGTTGTG+TGG | - | chr4_1:59267806-59267825 | Msa0560050:intron | 35.0% | |
| TATATGTCAGAACAGAAGCA+TGG | + | chr4_1:59267852-59267871 | None:intergenic | 35.0% | |
| ATACTGTTCCAATGTGATGT+TGG | - | chr4_1:59268123-59268142 | Msa0560050:intron | 35.0% | |
| ATAAGAGCCCTAATTCAACT+TGG | - | chr4_1:59268255-59268274 | Msa0560050:CDS | 35.0% | |
| CATACTTGATCCAAACACAA+TGG | + | chr4_1:59268299-59268318 | None:intergenic | 35.0% | |
| ! | CAACAAAGTGCTAGTGATTA+CGG | + | chr4_1:59268525-59268544 | None:intergenic | 35.0% |
| !! | ACATTGTAGCAAGAGTGTTT+AGG | + | chr4_1:59268694-59268713 | None:intergenic | 35.0% |
| TATATTTACCACACAGGAAG+TGG | - | chr4_1:59268721-59268740 | Msa0560050:intron | 35.0% | |
| AAACCGAAGATTGAAACATG+TGG | - | chr4_1:59268757-59268776 | Msa0560050:intron | 35.0% | |
| CGCAGCAGCATAATAATATA+TGG | - | chr4_1:59268843-59268862 | Msa0560050:intron | 35.0% | |
| TAGGTACCAGACCTTATAAA+TGG | - | chr4_1:59268881-59268900 | Msa0560050:intron | 35.0% | |
| AGACCTTATAAATGGACGAT+GGG | - | chr4_1:59268889-59268908 | Msa0560050:intron | 35.0% | |
| ! | GCTTACTTGTTAATGAACAC+TGG | - | chr4_1:59269026-59269045 | Msa0560050:intron | 35.0% |
| ! | TACTTGTTAATGAACACTGG+CGG | - | chr4_1:59269029-59269048 | Msa0560050:intron | 35.0% |
| TTTCACATCACAACCTACTT+GGG | + | chr4_1:59269237-59269256 | None:intergenic | 35.0% | |
| ATTTCACATCACAACCTACT+TGG | + | chr4_1:59269238-59269257 | None:intergenic | 35.0% | |
| ATATATCACTAGCGGAAATC+GGG | + | chr4_1:59269377-59269396 | None:intergenic | 35.0% | |
| TTTAAGAAATGGTAACCTGC+AGG | + | chr4_1:59269698-59269717 | None:intergenic | 35.0% | |
| GAACTACAGTTATACAACCA+AGG | + | chr4_1:59269863-59269882 | None:intergenic | 35.0% | |
| CCATATCGTATACATCAACT+TGG | + | chr4_1:59269949-59269968 | None:intergenic | 35.0% | |
| !! | CCAAGTTGATGTATACGATA+TGG | - | chr4_1:59269946-59269965 | Msa0560050:CDS | 35.0% |
| CGCTCTCAACCTGTAAATAA+AGG | + | chr4_1:59267481-59267500 | None:intergenic | 40.0% | |
| AGTAATTCCACCTTCAACAC+AGG | - | chr4_1:59267632-59267651 | Msa0560050:intron | 40.0% | |
| CATTCAATTGCCTGTGTTGA+AGG | + | chr4_1:59267645-59267664 | None:intergenic | 40.0% | |
| CTTCAACACAGGCAATTGAA+TGG | - | chr4_1:59267643-59267662 | Msa0560050:intron | 40.0% | |
| AGAAGAACTCCAGAAACTAG+AGG | - | chr4_1:59267690-59267709 | Msa0560050:intron | 40.0% | |
| CCACTTAACCAACATCACAT+TGG | + | chr4_1:59268134-59268153 | None:intergenic | 40.0% | |
| ! | CCAATGTGATGTTGGTTAAG+TGG | - | chr4_1:59268131-59268150 | Msa0560050:intron | 40.0% |
| ! | TCCCTCACCAAGTTGAATTA+GGG | + | chr4_1:59268265-59268284 | None:intergenic | 40.0% |
| ! | TTCCCTCACCAAGTTGAATT+AGG | + | chr4_1:59268266-59268285 | None:intergenic | 40.0% |
| CATCGTCCATTTATAAGGTC+TGG | + | chr4_1:59268890-59268909 | None:intergenic | 40.0% | |
| CAGACCTTATAAATGGACGA+TGG | - | chr4_1:59268888-59268907 | Msa0560050:intron | 40.0% | |
| GACCTTATAAATGGACGATG+GGG | - | chr4_1:59268890-59268909 | Msa0560050:intron | 40.0% | |
| !! | TTTTCTTCTGAAGACGACGA+TGG | - | chr4_1:59268947-59268966 | Msa0560050:intron | 40.0% |
| AGTGACACTTCTCTCAAGTT+GGG | - | chr4_1:59268971-59268990 | Msa0560050:intron | 40.0% | |
| TACTTGTGTAGAACCCAAGT+AGG | - | chr4_1:59269221-59269240 | Msa0560050:intron | 40.0% | |
| !! | AGAAAAGCATTGAACCCCTT+AGG | - | chr4_1:59269261-59269280 | Msa0560050:intron | 40.0% |
| !! | GAAAAGCATTGAACCCCTTA+GGG | - | chr4_1:59269262-59269281 | Msa0560050:intron | 40.0% |
| AACATAGCTAACACCCTAAG+GGG | + | chr4_1:59269278-59269297 | None:intergenic | 40.0% | |
| CAACATAGCTAACACCCTAA+GGG | + | chr4_1:59269279-59269298 | None:intergenic | 40.0% | |
| TCAACATAGCTAACACCCTA+AGG | + | chr4_1:59269280-59269299 | None:intergenic | 40.0% | |
| GACAGTATTGCTTCCTTTCT+AGG | - | chr4_1:59269756-59269775 | Msa0560050:intron | 40.0% | |
| GATGCTGATCAGTAGATGGA+TGG | + | chr4_1:59267300-59267319 | None:intergenic | 45.0% | |
| TCCATCTACTGATCAGCATC+AGG | - | chr4_1:59267300-59267319 | Msa0560050:three_prime_UTR | 45.0% | |
| ACCTGATGCTGATCAGTAGA+TGG | + | chr4_1:59267304-59267323 | None:intergenic | 45.0% | |
| TCAATTGCCTGTGTTGAAGG+TGG | + | chr4_1:59267642-59267661 | None:intergenic | 45.0% | |
| !! | TAAGAAGCGCCTCTAGTTTC+TGG | + | chr4_1:59267702-59267721 | None:intergenic | 45.0% |
| ! | AGAACAGAAGCATGGATGGA+TGG | + | chr4_1:59267844-59267863 | None:intergenic | 45.0% |
| ! | TGTCAGAACAGAAGCATGGA+TGG | + | chr4_1:59267848-59267867 | None:intergenic | 45.0% |
| CATCGACACCCTTAAGAGAA+AGG | - | chr4_1:59267911-59267930 | Msa0560050:intron | 45.0% | |
| GGAAGCAATTTGCCCTGATA+AGG | - | chr4_1:59268152-59268171 | Msa0560050:intron | 45.0% | |
| AGCAATTTGCCCTGATAAGG+AGG | - | chr4_1:59268155-59268174 | Msa0560050:intron | 45.0% | |
| ! | AGCCCTAATTCAACTTGGTG+AGG | - | chr4_1:59268260-59268279 | Msa0560050:CDS | 45.0% |
| ! | GCCCTAATTCAACTTGGTGA+GGG | - | chr4_1:59268261-59268280 | Msa0560050:CDS | 45.0% |
| ! | TCAACTTGGTGAGGGAATGT+AGG | - | chr4_1:59268269-59268288 | Msa0560050:CDS | 45.0% |
| ! | CAACTTGGTGAGGGAATGTA+GGG | - | chr4_1:59268270-59268289 | Msa0560050:CDS | 45.0% |
| ! | AACTTGGTGAGGGAATGTAG+GGG | - | chr4_1:59268271-59268290 | Msa0560050:CDS | 45.0% |
| GTCCCCATCGTCCATTTATA+AGG | + | chr4_1:59268895-59268914 | None:intergenic | 45.0% | |
| CAGTGACACTTCTCTCAAGT+TGG | - | chr4_1:59268970-59268989 | Msa0560050:intron | 45.0% | |
| ! | GTGACACTTCTCTCAAGTTG+GGG | - | chr4_1:59268972-59268991 | Msa0560050:intron | 45.0% |
| TCATTAACAATGGCGTTGCC+AGG | + | chr4_1:59269514-59269533 | None:intergenic | 45.0% | |
| GGCAACGCCATTGTTAATGA+AGG | - | chr4_1:59269514-59269533 | Msa0560050:CDS | 45.0% | |
| GGTTGATCATCGACCTAGAA+AGG | + | chr4_1:59269772-59269791 | None:intergenic | 45.0% | |
| GGTTAAGGAAAATGAGGCCT+TGG | - | chr4_1:59269843-59269862 | Msa0560050:intron | 45.0% | |
| !!! | ATTTTTTATACTATTTTTTT+GGG | + | chr4_1:59269332-59269351 | None:intergenic | 5.0% |
| !!! | AATTTTATTTATTTAAGAAA+TGG | + | chr4_1:59269709-59269728 | None:intergenic | 5.0% |
| TCTCGTGAACTGAGGTACAG+TGG | - | chr4_1:59267542-59267561 | Msa0560050:intron | 50.0% | |
| CTCGTGAACTGAGGTACAGT+GGG | - | chr4_1:59267543-59267562 | Msa0560050:intron | 50.0% | |
| ! | CAGAAGCATGGATGGATGGA+TGG | + | chr4_1:59267840-59267859 | None:intergenic | 50.0% |
| ! | ACTTGGTGAGGGAATGTAGG+GGG | - | chr4_1:59268272-59268291 | Msa0560050:CDS | 50.0% |
| TGTAGGGGGACCATTGTGTT+TGG | - | chr4_1:59268286-59268305 | Msa0560050:CDS | 50.0% | |
| GATCAGTTCCACTTCCTGTG+TGG | + | chr4_1:59268732-59268751 | None:intergenic | 50.0% | |
| TGGACGATGGGGACAATCAT+TGG | - | chr4_1:59268901-59268920 | Msa0560050:intron | 50.0% | |
| TGAGTTCATCTGTGTCCTGC+AGG | - | chr4_1:59269680-59269699 | Msa0560050:CDS | 50.0% | |
| TCATCCAGAGGACTGTGAGA+AGG | - | chr4_1:59269729-59269748 | Msa0560050:intron | 50.0% | |
| GCGGAGCTACATAGAGCTCA+GGG | - | chr4_1:59269048-59269067 | Msa0560050:intron | 55.0% | |
| CGGAGCTACATAGAGCTCAG+GGG | - | chr4_1:59269049-59269068 | Msa0560050:intron | 55.0% | |
| GGAGCTACATAGAGCTCAGG+GGG | - | chr4_1:59269050-59269069 | Msa0560050:intron | 55.0% | |
| AAAGTGTGAACCCCTGAGCC+AGG | - | chr4_1:59269486-59269505 | Msa0560050:CDS | 55.0% | |
| AAGTGTGAACCCCTGAGCCA+GGG | - | chr4_1:59269487-59269506 | Msa0560050:CDS | 55.0% | |
| CTCTCCTTCTCACAGTCCTC+TGG | + | chr4_1:59269736-59269755 | None:intergenic | 55.0% | |
| CAGAGGACTGTGAGAAGGAG+AGG | - | chr4_1:59269734-59269753 | Msa0560050:intron | 55.0% | |
| GGCGGAGCTACATAGAGCTC+AGG | - | chr4_1:59269047-59269066 | Msa0560050:intron | 60.0% | |
| TTGCCAGGACCCTGGCTCAG+GGG | + | chr4_1:59269499-59269518 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGCTCA+GGG | + | chr4_1:59269500-59269519 | None:intergenic | 65.0% | |
| CAATGGCGTTGCCAGGACCC+TGG | + | chr4_1:59269507-59269526 | None:intergenic | 65.0% | |
| GAACCCCTGAGCCAGGGTCC+TGG | - | chr4_1:59269493-59269512 | Msa0560050:CDS | 70.0% | |
| CGTTGCCAGGACCCTGGCTC+AGG | + | chr4_1:59269501-59269520 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 59267205 | 59270012 | 59267205 | ID=Msa0560050;Name=Msa0560050 |
| chr4_1 | mRNA | 59267205 | 59270012 | 59267205 | ID=Msa0560050-mRNA-1;Parent=Msa0560050;Name=Msa0560050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=36|1|1|1|0.83|0.85|7|292|152 |
| chr4_1 | exon | 59267205 | 59267515 | 59267205 | ID=Msa0560050-mRNA-1:exon:18292;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59268224 | 59268333 | 59268224 | ID=Msa0560050-mRNA-1:exon:18291;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59268439 | 59268480 | 59268439 | ID=Msa0560050-mRNA-1:exon:18290;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59269285 | 59269326 | 59269285 | ID=Msa0560050-mRNA-1:exon:18289;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59269464 | 59269563 | 59269464 | ID=Msa0560050-mRNA-1:exon:18288;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59269662 | 59269726 | 59269662 | ID=Msa0560050-mRNA-1:exon:18287;Parent=Msa0560050-mRNA-1 |
| chr4_1 | exon | 59269896 | 59270012 | 59269896 | ID=Msa0560050-mRNA-1:exon:18286;Parent=Msa0560050-mRNA-1 |
| chr4_1 | five_prime_UTR | 59269977 | 59270012 | 59269977 | ID=Msa0560050-mRNA-1:five_prime_utr;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59269896 | 59269976 | 59269896 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59269662 | 59269726 | 59269662 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59269464 | 59269563 | 59269464 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59269285 | 59269326 | 59269285 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59268439 | 59268480 | 59268439 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59268224 | 59268333 | 59268224 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | CDS | 59267497 | 59267515 | 59267497 | ID=Msa0560050-mRNA-1:cds;Parent=Msa0560050-mRNA-1 |
| chr4_1 | three_prime_UTR | 59267205 | 59267496 | 59267205 | ID=Msa0560050-mRNA-1:three_prime_utr;Parent=Msa0560050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
