AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968360 MtrunA17_Chr7g0263731 97.863 468 10 0 1 468 1 468 0.0 932
Msa0968360 MtrunA17_Chr1g0181581 69.665 478 121 11 1 467 1 465 0.0 596
Msa0968360 MtrunA17_Chr6g0462191 50.873 458 188 9 1 453 1 426 4.66e-121 360
Msa0968360 MtrunA17_Chr1g0200161 39.293 509 238 11 1 465 1 482 5.26e-98 303
Msa0968360 MtrunA17_Chr4g0045641 35.294 357 178 15 108 439 146 474 5.62e-43 159
Msa0968360 MtrunA17_Chr4g0025441 47.917 192 96 2 107 298 95 282 7.72e-42 154
Msa0968360 MtrunA17_Chr8g0346021 32.061 393 200 14 94 438 113 486 1.53e-41 155
Msa0968360 MtrunA17_Chr4g0020671 31.590 459 210 23 3 439 4 380 2.05e-38 144
Msa0968360 MtrunA17_Chr2g0283321 40.828 169 97 2 107 275 62 227 5.79e-36 134
Msa0968360 MtrunA17_Chr7g0273861 28.539 438 219 18 1 411 1 371 6.30e-32 126
Msa0968360 MtrunA17_Chr3g0135851 44.385 187 89 5 103 275 80 265 1.23e-31 126
Msa0968360 MtrunA17_Chr2g0316401 35.928 167 106 1 109 275 75 240 7.46e-31 121
Msa0968360 MtrunA17_Chr1g0146931 39.109 202 97 4 106 281 120 321 3.14e-28 117
Msa0968360 MtrunA17_Chr3g0126901 27.352 457 219 15 1 429 1 372 5.33e-26 110
Msa0968360 MtrunA17_Chr1g0204901 31.950 241 130 8 1 211 1 237 9.92e-20 91.7
Msa0968360 MtrunA17_Chr1g0203711 28.254 315 173 10 107 411 114 385 7.56e-19 88.6
Msa0968360 MtrunA17_Chr8g0340761 31.496 254 125 12 1 216 1 243 1.01e-18 88.2
Msa0968360 MtrunA17_Chr8g0342551 33.681 288 166 8 1 283 1 268 1.51e-18 87.8
Msa0968360 MtrunA17_Chr8g0389781 40.458 131 61 4 103 223 121 244 2.33e-18 87.4
Msa0968360 MtrunA17_Chr6g0472551 53.165 79 36 1 107 184 115 193 2.98e-18 87.0
Msa0968360 MtrunA17_Chr2g0330051 32.000 325 150 10 105 409 69 342 3.53e-18 86.3
Msa0968360 MtrunA17_Chr2g0330921 48.780 82 36 1 97 172 80 161 1.14e-16 81.3
Msa0968360 MtrunA17_Chr1g0172611 27.500 280 179 10 1 265 1 271 3.78e-16 79.7
Msa0968360 MtrunA17_Chr7g0273951 50.000 74 37 0 110 183 108 181 1.76e-15 78.2
Msa0968360 MtrunA17_Chr4g0060381 28.507 221 118 3 54 272 61 243 3.15e-15 78.2
Msa0968360 MtrunA17_Chr1g0166431 43.000 100 56 1 108 206 117 216 5.87e-14 73.6
Msa0968360 MtrunA17_Chr8g0371131 48.485 66 34 0 106 171 69 134 8.40e-14 68.6
Msa0968360 MtrunA17_Chr3g0130441 36.842 114 65 3 251 362 1 109 2.02e-12 64.3
Msa0968360 MtrunA17_Chr1g0156121 31.481 162 84 5 108 267 124 260 3.05e-12 68.9
Msa0968360 MtrunA17_Chr3g0130451 54.098 61 25 1 169 226 47 107 5.60e-12 62.4
Msa0968360 MtrunA17_Chr4g0057321 46.970 66 35 0 106 171 86 151 1.35e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968360 AT5G03040.1 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa0968360 AT5G03040.3 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa0968360 AT5G03040.2 52.449 490 182 15 1 468 1 461 3.24e-147 428
Msa0968360 AT3G09710.1 48.211 475 199 15 1 456 1 447 1.14e-111 337
Msa0968360 AT3G52290.1 46.383 470 190 14 1 456 1 422 2.02e-111 336
Msa0968360 AT3G09710.2 46.830 489 199 16 1 456 1 461 3.00e-108 329
Msa0968360 AT2G26410.2 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa0968360 AT2G26410.1 37.425 334 160 8 106 434 146 435 2.42e-56 196
Msa0968360 AT3G22190.3 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa0968360 AT3G22190.2 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa0968360 AT3G22190.4 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa0968360 AT3G22190.1 44.177 249 123 8 86 323 63 306 2.18e-40 150
Msa0968360 AT3G59690.2 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa0968360 AT3G59690.1 33.770 305 152 8 111 411 172 430 1.43e-37 144
Msa0968360 AT2G33990.1 40.698 172 100 1 107 278 46 215 1.71e-37 138
Msa0968360 AT2G26180.1 46.667 195 89 4 95 275 65 258 1.15e-36 140
Msa0968360 AT1G01110.2 28.858 499 266 20 1 440 1 469 1.43e-36 141
Msa0968360 AT2G43680.4 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa0968360 AT2G43680.2 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa0968360 AT2G43680.3 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa0968360 AT2G43680.5 31.672 341 173 12 105 439 319 605 1.54e-35 140
Msa0968360 AT2G43680.1 31.672 341 173 12 105 439 320 606 1.71e-35 140
Msa0968360 AT4G00820.1 30.833 360 210 13 106 440 130 475 1.93e-34 135
Msa0968360 AT3G15050.1 37.870 169 104 1 108 276 50 217 3.33e-33 126
Msa0968360 AT3G49260.1 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa0968360 AT3G49260.4 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa0968360 AT3G49260.2 30.592 304 178 9 1 275 1 300 1.78e-30 123
Msa0968360 AT5G13460.1 29.508 305 158 10 1 279 1 274 5.23e-30 122
Msa0968360 AT3G49260.3 30.293 307 176 10 1 275 1 301 1.85e-29 120
Msa0968360 AT1G72670.1 34.906 212 124 5 95 295 74 282 1.45e-28 117
Msa0968360 AT4G10640.1 28.189 486 189 20 1 436 1 376 2.54e-22 99.4
Msa0968360 AT1G17480.1 36.306 157 87 3 106 260 92 237 7.08e-21 94.4
Msa0968360 AT4G29150.1 44.444 99 55 0 102 200 125 223 7.97e-18 85.5
Msa0968360 AT4G14750.1 43.529 85 48 0 90 174 87 171 1.46e-17 84.7
Msa0968360 AT4G14750.2 43.529 85 48 0 90 174 146 230 2.06e-17 84.7
Msa0968360 AT3G16490.1 43.000 100 52 2 101 197 100 197 2.21e-17 84.3
Msa0968360 AT4G14750.3 43.529 85 48 0 90 174 146 230 2.26e-17 84.7
Msa0968360 AT1G18840.1 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa0968360 AT1G18840.3 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa0968360 AT1G18840.2 35.659 129 79 2 61 188 64 189 2.99e-16 81.6
Msa0968360 AT5G35670.1 35.542 166 94 5 107 270 159 313 4.03e-16 80.9
Msa0968360 AT1G74690.1 31.953 169 85 3 108 272 113 255 4.80e-16 81.3
Msa0968360 AT4G23060.1 42.157 102 57 1 82 181 139 240 1.65e-15 79.3
Msa0968360 AT5G07240.1 61.017 59 23 0 110 168 108 166 1.79e-15 78.6
Msa0968360 AT5G07240.2 61.017 59 23 0 110 168 154 212 2.22e-15 78.6
Msa0968360 AT1G51960.1 54.839 62 28 0 110 171 102 163 6.29e-15 76.3
Msa0968360 AT5G62070.1 59.649 57 23 0 106 162 115 171 9.05e-15 76.3
Msa0968360 AT3G51380.1 50.000 64 32 0 106 169 35 98 1.66e-14 69.7
Msa0968360 AT5G03960.1 36.000 150 65 3 100 232 99 234 7.27e-14 73.6
Msa0968360 AT5G03960.3 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa0968360 AT5G03960.2 36.000 150 65 3 100 232 100 235 7.64e-14 73.6
Msa0968360 AT3G49380.1 54.237 59 27 0 106 164 108 166 4.36e-11 64.7
Msa0968360 AT1G14380.7 27.477 222 117 7 70 274 42 236 7.78e-11 64.7
Msa0968360 AT1G14380.6 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa0968360 AT1G14380.5 27.477 222 117 7 70 274 42 236 8.85e-11 64.7
Msa0968360 AT1G14380.2 27.477 222 117 7 70 274 42 236 8.85e-11 64.7

Find 144 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCCCATTATCTTCT+TGG 0.102885 6_3:-98690966 None:intergenic
CTCATACTTGCTCAGTAATT+TGG 0.160600 6_3:-98692047 None:intergenic
CACAGGTAACTCTGCATTTA+TGG 0.176562 6_3:-98693709 None:intergenic
GACCTTGAGGGGAAGAAATT+TGG 0.205051 6_3:+98693981 Msa0968360:three_prime_UTR
TTTACAGGAACATGTATTAA+AGG 0.248528 6_3:+98690449 Msa0968360:five_prime_UTR
ATCTTTCACTTCATTCATTC+AGG 0.259648 6_3:+98690548 Msa0968360:five_prime_UTR
CAATTTGTTCTTTAGATTGT+AGG 0.261072 6_3:-98692021 None:intergenic
AGCTGGGTGAGCCAGGATTT+TGG 0.263792 6_3:-98693302 None:intergenic
TGATATAAAGGATCAAATTA+AGG 0.280243 6_3:+98690939 Msa0968360:intron
CTGTACACTTGCCATGCTTT+TGG 0.281192 6_3:-98693424 None:intergenic
AAAATACAAATTGATTAATA+TGG 0.294508 6_3:-98693938 None:intergenic
ATTGCTGCCACTTCATCCTT+TGG 0.307055 6_3:-98691376 None:intergenic
TAATGGGGAAGAAGGGAAAT+TGG 0.319680 6_3:+98690975 Msa0968360:exon
AGTTCGAGCCGCAGCATTAT+AGG 0.323895 6_3:+98693213 Msa0968360:CDS
TTCCGCAGGCACTCTATTGC+CGG 0.327399 6_3:+98693456 Msa0968360:CDS
AAAAGTATTAATGAAATGTT+TGG 0.336829 6_3:-98693888 None:intergenic
AGTCCATTAGCAAAAGAAAA+TGG 0.343691 6_3:+98693582 Msa0968360:CDS
TCAGTTAATTTAATATCTTC+TGG 0.345648 6_3:-98691220 None:intergenic
AAGGAATGCCAAGAAGATAA+TGG 0.348066 6_3:+98690958 Msa0968360:exon
AGGAATGCCAAGAAGATAAT+GGG 0.352188 6_3:+98690959 Msa0968360:exon
TCCATCAGTTCCAAGTTATA+TGG 0.368788 6_3:+98693515 Msa0968360:CDS
CGGCTTAGTAGGAGTTGAAT+TGG 0.370892 6_3:-98693331 None:intergenic
CTTGGCCTCGCAGGCGAAGC+CGG 0.371444 6_3:-98693654 None:intergenic
TTAGGCAAGAAGAGCATTGC+GGG 0.387422 6_3:+98691657 Msa0968360:intron
AGAAAATGGCAAACAAGAAA+AGG 0.397205 6_3:+98693596 Msa0968360:CDS
GGCTTATGCATTCACTCATC+AGG 0.397924 6_3:+98692096 Msa0968360:CDS
TGGATCCCACCAATCCTACT+TGG 0.400459 6_3:+98693097 Msa0968360:CDS
GACTGAAAGCTGGGTGAGCC+AGG 0.404427 6_3:-98693309 None:intergenic
TTTATGGCGGTTTCTACCTT+CGG 0.410128 6_3:-98693693 None:intergenic
ATCTATGAATCCAATGTTTG+TGG 0.410976 6_3:+98693077 Msa0968360:CDS
TCCATAACCCAACTTCCCTT+TGG 0.416087 6_3:-98693393 None:intergenic
ATGGATGGCTGCCCGACCTT+GGG 0.416101 6_3:+98693140 Msa0968360:CDS
TAGGAGGGTCAGAATGTTAG+AGG 0.417574 6_3:+98691798 Msa0968360:CDS
TTCAGAGTTGAGCTGGAAAC+GGG 0.418428 6_3:-98693259 None:intergenic
CAGAATGTTAGAGGAGAATC+AGG 0.419135 6_3:+98691807 Msa0968360:CDS
AAACAAGAAAAGGGGTCCTT+TGG 0.420323 6_3:+98693606 Msa0968360:CDS
AGAGCATTGCGGGCTTTAAG+AGG 0.426239 6_3:+98691667 Msa0968360:CDS
CTGATTATTATATAATCAAC+TGG 0.427029 6_3:-98693745 None:intergenic
TGCAATCTCAGATTCGTTCT+AGG 0.427507 6_3:+98691779 Msa0968360:CDS
CATTATAGATTGGGGAGGAA+TGG 0.428913 6_3:+98691990 Msa0968360:intron
TCCAAAGGGAAGTTGGGTTA+TGG 0.429384 6_3:+98693392 Msa0968360:CDS
GAAAATGGCAAACAAGAAAA+GGG 0.429410 6_3:+98693597 Msa0968360:CDS
TTGGCCTCGCAGGCGAAGCC+GGG 0.432715 6_3:-98693653 None:intergenic
TTCTTTACCATTGACCTTGA+GGG 0.433200 6_3:+98693969 Msa0968360:three_prime_UTR
GAAGCAGAACCCGGCTTAGT+AGG 0.447007 6_3:-98693342 None:intergenic
ATTATAGATTGGGGAGGAAT+GGG 0.448809 6_3:+98691991 Msa0968360:intron
TTTCTTCCCCTCAAGGTCAA+TGG 0.453129 6_3:-98693976 None:intergenic
TTTCAGAGTTGAGCTGGAAA+CGG 0.462924 6_3:-98693260 None:intergenic
ATATCTTCTGGCGGAGGAAG+AGG 0.467550 6_3:-98691208 None:intergenic
GATGGATGGCTGCCCGACCT+TGG 0.469154 6_3:+98693139 Msa0968360:CDS
CATGTATTAAAGGTGTGGTT+TGG 0.469410 6_3:+98690459 Msa0968360:five_prime_UTR
CTAGCAACTGAAGCAGAACC+CGG 0.473296 6_3:-98693351 None:intergenic
GGCGAGTCCAAAGGGAAGTT+GGG 0.474248 6_3:+98693386 Msa0968360:CDS
CAAATTACTGAGCAAGTATG+AGG 0.474416 6_3:+98692048 Msa0968360:CDS
AATGTATTTCAGAGTTGAGC+TGG 0.481876 6_3:-98693266 None:intergenic
GGATCCCACCAATCCTACTT+GGG 0.483131 6_3:+98693098 Msa0968360:CDS
CAAGAAGATAATGGGGAAGA+AGG 0.486516 6_3:+98690967 Msa0968360:exon
TAATACATGTTCCTGTAAAG+AGG 0.486866 6_3:-98690445 None:intergenic
GAAACTCTTGATTCTAAATG+TGG 0.487636 6_3:+98694128 Msa0968360:three_prime_UTR
CGGGTTCTGCTTCAGTTGCT+AGG 0.487745 6_3:+98693352 Msa0968360:CDS
CAATTCAACTCCTACTAAGC+CGG 0.488786 6_3:+98693332 Msa0968360:CDS
AGGCGAGTCCAAAGGGAAGT+TGG 0.492154 6_3:+98693385 Msa0968360:CDS
CTTGTTGATGAAACACAGAA+TGG 0.495295 6_3:-98694048 None:intergenic
CTGAAGAAGGCGAGTCCAAA+GGG 0.500013 6_3:+98693378 Msa0968360:CDS
AGTTGAATTGGACTGAAAGC+TGG 0.502940 6_3:-98693319 None:intergenic
GCTGTCTGAACAGAACGAAC+AGG 0.506676 6_3:-98691307 None:intergenic
AGCGGAGGGTACTCATGGCT+TGG 0.509205 6_3:-98691735 None:intergenic
AGGACAGAAATCATTAAAGT+AGG 0.510647 6_3:+98693774 Msa0968360:three_prime_UTR
ATTGCGGGCTTTAAGAGGGC+TGG 0.511040 6_3:+98691672 Msa0968360:CDS
CGACTCAATCTGCGAAAGCT+AGG 0.512605 6_3:+98693541 Msa0968360:CDS
GGTGGACCTGAATGACGCCT+TGG 0.514462 6_3:-98693672 None:intergenic
TATTAAAGGTGTGGTTTGGT+TGG 0.514474 6_3:+98690463 Msa0968360:five_prime_UTR
AGCTCTTACAGAAGCACGCA+AGG 0.515912 6_3:+98691842 Msa0968360:CDS
TCCGCAGGCACTCTATTGCC+GGG 0.521984 6_3:+98693457 Msa0968360:CDS
CCAGTAGCGAGCCAAAATCC+TGG 0.525286 6_3:+98693291 Msa0968360:CDS
AGCTCTCAGCCCTGACTCAA+AGG 0.528686 6_3:+98691015 Msa0968360:CDS
GGTGAGATTGAAAACATTGA+TGG 0.529438 6_3:+98691693 Msa0968360:CDS
TACAGTCAGATCGGTTCCGC+AGG 0.535268 6_3:+98693442 Msa0968360:CDS
AATACATGTTCCTGTAAAGA+GGG 0.535430 6_3:-98690444 None:intergenic
GTTCATGTTGATCTTGTGAC+GGG 0.537235 6_3:+98694003 Msa0968360:three_prime_UTR
AACCAAATTTCTTCCCCTCA+AGG 0.538043 6_3:-98693983 None:intergenic
CATTGAGCGGAGGGTACTCA+TGG 0.539242 6_3:-98691740 None:intergenic
AATTCAACTCCTACTAAGCC+GGG 0.541175 6_3:+98693333 Msa0968360:CDS
ACCATATAACTTGGAACTGA+TGG 0.542002 6_3:-98693516 None:intergenic
TTGGTGGGATCCACAAACAT+TGG 0.547737 6_3:-98693087 None:intergenic
TTGTAATTTCAGCAACATGA+TGG 0.550799 6_3:-98691264 None:intergenic
TATATAATAATCAGAGTGAA+AGG 0.551583 6_3:+98693754 Msa0968360:three_prime_UTR
ATGGCGGTTTCTACCTTCGG+TGG 0.551866 6_3:-98693690 None:intergenic
TGAGTCGGCACCATATAACT+TGG 0.553119 6_3:-98693525 None:intergenic
GATCCCACCAATCCTACTTG+GGG 0.554025 6_3:+98693099 Msa0968360:CDS
CATTCTGTGTTTCATCAACA+AGG 0.560883 6_3:+98694049 Msa0968360:three_prime_UTR
ATCATCTCTAACTGATGACC+CGG 0.566819 6_3:-98693475 None:intergenic
ATTCTTTACCATTGACCTTG+AGG 0.568860 6_3:+98693968 Msa0968360:three_prime_UTR
TACAACTGTGGTGGATGTCG+AGG 0.573197 6_3:+98691282 Msa0968360:CDS
GAGCATTGCGGGCTTTAAGA+GGG 0.574907 6_3:+98691668 Msa0968360:CDS
GGTTCATGTTGATCTTGTGA+CGG 0.575573 6_3:+98694002 Msa0968360:three_prime_UTR
GCTGTATCGATTTCTACAGA+GGG 0.577428 6_3:-98691181 None:intergenic
AGGAACATGTATTAAAGGTG+TGG 0.580118 6_3:+98690454 Msa0968360:five_prime_UTR
TAACGTCTGCATTGAGCGGA+GGG 0.581741 6_3:-98691749 None:intergenic
AATTTAATATCTTCTGGCGG+AGG 0.588204 6_3:-98691214 None:intergenic
AAGAAGATAATGGGGAAGAA+GGG 0.590179 6_3:+98690968 Msa0968360:exon
AGATTGAAAACATTGATGGA+AGG 0.590382 6_3:+98691697 Msa0968360:CDS
ACTGAAGAAGGCGAGTCCAA+AGG 0.594202 6_3:+98693377 Msa0968360:CDS
ATCCCACCAATCCTACTTGG+GGG 0.597567 6_3:+98693100 Msa0968360:CDS
AGTTGCTAGGAAACTGAAGA+AGG 0.598507 6_3:+98693365 Msa0968360:CDS
CTGGCCACACCATTGCTCAC+AGG 0.598982 6_3:-98693726 None:intergenic
TGCTGTATCGATTTCTACAG+AGG 0.603089 6_3:-98691182 None:intergenic
TGGTAAACCAAAGGATGAAG+TGG 0.603448 6_3:+98691369 Msa0968360:CDS
TCTTTACCATTGACCTTGAG+GGG 0.607112 6_3:+98693970 Msa0968360:three_prime_UTR
ATCTCAGATTCGTTCTAGGA+GGG 0.616350 6_3:+98691783 Msa0968360:CDS
AATCTCAGATTCGTTCTAGG+AGG 0.623684 6_3:+98691782 Msa0968360:CDS
GATTGAAAACATTGATGGAA+GGG 0.623713 6_3:+98691698 Msa0968360:CDS
CTAACGTCTGCATTGAGCGG+AGG 0.624271 6_3:-98691750 None:intergenic
TGGCAAGTGTACAGTCAGAT+CGG 0.624328 6_3:+98693433 Msa0968360:CDS
CTAGCTTTCGCAGATTGAGT+CGG 0.624424 6_3:-98693540 None:intergenic
GGATGATGACTCCAAAAGCA+TGG 0.624895 6_3:+98693413 Msa0968360:CDS
CATGTTGATCTTGTGACGGG+AGG 0.627453 6_3:+98694006 Msa0968360:three_prime_UTR
GTTGAATTGGACTGAAAGCT+GGG 0.631003 6_3:-98693318 None:intergenic
AAGGGAGCTTGAAACCATGC+GGG 0.632453 6_3:+98691861 Msa0968360:CDS
GCCCGACCTTGGGAGAGCCG+TGG 0.632629 6_3:+98693150 Msa0968360:CDS
ACCCGGCAATAGAGTGCCTG+CGG 0.633713 6_3:-98693458 None:intergenic
GAAAGAAACCCATACCCGCA+TGG 0.636453 6_3:-98691875 None:intergenic
TCTTCTGGCGGAGGAAGAGG+CGG 0.642359 6_3:-98691205 None:intergenic
AGGTAACTCTGCATTTATGG+CGG 0.642380 6_3:-98693706 None:intergenic
GCGTCATTCAGGTCCACCGA+AGG 0.644936 6_3:+98693677 Msa0968360:CDS
TATGCGAAGAGAAAGAGCAC+TGG 0.647271 6_3:+98692075 Msa0968360:CDS
TGCTGAAATTACAACTGTGG+TGG 0.649384 6_3:+98691273 Msa0968360:CDS
GGAATGCCAAGAAGATAATG+GGG 0.650329 6_3:+98690960 Msa0968360:exon
TCGAGCCGCAGCATTATAGG+TGG 0.650702 6_3:+98693216 Msa0968360:CDS
AAAATGGCAAACAAGAAAAG+GGG 0.651135 6_3:+98693598 Msa0968360:CDS
TTTAGGCAAGAAGAGCATTG+CGG 0.651340 6_3:+98691656 Msa0968360:intron
TTTCTCCACCTATAATGCTG+CGG 0.652765 6_3:-98693221 None:intergenic
GTTAATTTAATATCTTCTGG+CGG 0.660808 6_3:-98691217 None:intergenic
GTTCTTTATCAACAACGCCA+CGG 0.668044 6_3:-98693167 None:intergenic
CAAGGGAGCTTGAAACCATG+CGG 0.673697 6_3:+98691860 Msa0968360:CDS
GAGCTGGATAGAACGATGGA+TGG 0.675083 6_3:+98693125 Msa0968360:CDS
GGTGGAGCTGGATAGAACGA+TGG 0.677630 6_3:+98693121 Msa0968360:CDS
GCTCTTACAGAAGCACGCAA+GGG 0.686718 6_3:+98691843 Msa0968360:CDS
GAGCTAACGTCTGCATTGAG+CGG 0.689445 6_3:-98691753 None:intergenic
GCAGAGTTACCTGTGAGCAA+TGG 0.694985 6_3:+98693717 Msa0968360:CDS
TCTGTGTTTCATCAACAAGG+AGG 0.705680 6_3:+98694052 Msa0968360:three_prime_UTR
CTGTATCGATTTCTACAGAG+GGG 0.722657 6_3:-98691180 None:intergenic
GTTACCTGTGAGCAATGGTG+TGG 0.726390 6_3:+98693722 Msa0968360:CDS
TGTTGCTGAAATTACAACTG+TGG 0.743093 6_3:+98691270 Msa0968360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATCAATTTTTTCAA+TGG - chr6_3:98690789-98690808 None:intergenic 10.0%
!!! AAAATATTTTCAAACTAAAT+TGG - chr6_3:98692535-98692554 None:intergenic 10.0%
!! AAAATACAAATTGATTAATA+TGG - chr6_3:98693941-98693960 None:intergenic 10.0%
!!! GCATTTTAAAAAAATGTTAA+AGG - chr6_3:98691900-98691919 None:intergenic 15.0%
!!! TGAATTTTTTTTAGATGAAT+TGG + chr6_3:98692162-98692181 Msa0968360:intron 15.0%
!!! TTAAACATTTGTTATAGAAA+GGG - chr6_3:98692667-98692686 None:intergenic 15.0%
!!! TTTAAACATTTGTTATAGAA+AGG - chr6_3:98692668-98692687 None:intergenic 15.0%
!! CAATTCATTCAAATTATAAT+AGG - chr6_3:98692981-98693000 None:intergenic 15.0%
!!! AAAAGTATTAATGAAATGTT+TGG - chr6_3:98693891-98693910 None:intergenic 15.0%
!!! TTTCATTAATACTTTTGATT+TGG + chr6_3:98693895-98693914 Msa0968360:three_prime_UTR 15.0%
!!! TTCATTAATACTTTTGATTT+GGG + chr6_3:98693896-98693915 Msa0968360:three_prime_UTR 15.0%
!! TTTATGAAAAAAAGAGAAAA+AGG - chr6_3:98694099-98694118 None:intergenic 15.0%
!! ATTCAATCTAAATCAAAGTT+GGG - chr6_3:98690673-98690692 None:intergenic 20.0%
!! AATTCAATCTAAATCAAAGT+TGG - chr6_3:98690674-98690693 None:intergenic 20.0%
!! TAATACATACTACTACTAAT+AGG + chr6_3:98690697-98690716 Msa0968360:intron 20.0%
!! AATACATACTACTACTAATA+GGG + chr6_3:98690698-98690717 Msa0968360:intron 20.0%
!! TTAAAACATGCTAATATCAA+TGG + chr6_3:98690827-98690846 Msa0968360:intron 20.0%
!! TGATATAAAGGATCAAATTA+AGG + chr6_3:98690939-98690958 Msa0968360:intron 20.0%
!! CAAGTAAATCAAAAAAGAAA+TGG + chr6_3:98691128-98691147 Msa0968360:CDS 20.0%
!! AAATCAAAAAAGAAATGGTT+TGG + chr6_3:98691133-98691152 Msa0968360:CDS 20.0%
!! AATCAAAAAAGAAATGGTTT+GGG + chr6_3:98691134-98691153 Msa0968360:CDS 20.0%
!! TCAGTTAATTTAATATCTTC+TGG - chr6_3:98691223-98691242 None:intergenic 20.0%
!!! TATCATTTTGAAATACCTTT+CGG + chr6_3:98691611-98691630 Msa0968360:intron 20.0%
!!! ACTGTCTTTTAAAATCATTT+AGG + chr6_3:98691639-98691658 Msa0968360:intron 20.0%
!!! AATTTTTATTTTCCGATCAA+TGG - chr6_3:98692318-98692337 None:intergenic 20.0%
!!! CTAAATTGGTTATAAGTTTT+AGG - chr6_3:98692521-98692540 None:intergenic 20.0%
!! CTATATAGATCTTCAAAAAT+AGG - chr6_3:98692613-98692632 None:intergenic 20.0%
!! AACTGAATTAAGCATATTAT+TGG - chr6_3:98692882-98692901 None:intergenic 20.0%
!! CTGATTATTATATAATCAAC+TGG - chr6_3:98693748-98693767 None:intergenic 20.0%
!! TATATAATAATCAGAGTGAA+AGG + chr6_3:98693754-98693773 Msa0968360:three_prime_UTR 20.0%
!!! TCATTAATACTTTTGATTTG+GGG + chr6_3:98693897-98693916 Msa0968360:three_prime_UTR 20.0%
! TTTACAGGAACATGTATTAA+AGG + chr6_3:98690449-98690468 Msa0968360:five_prime_UTR 25.0%
!!! CTTTTTGTTTAAACACGAAT+TGG + chr6_3:98690515-98690534 Msa0968360:five_prime_UTR 25.0%
! AAATTTATCTCTCTTGAAGA+AGG - chr6_3:98690590-98690609 None:intergenic 25.0%
!! TCCTTCTTTTTGTGATATAA+AGG + chr6_3:98690927-98690946 Msa0968360:intron 25.0%
! TCCTTTATATCACAAAAAGA+AGG - chr6_3:98690931-98690950 None:intergenic 25.0%
! GTTAATTTAATATCTTCTGG+CGG - chr6_3:98691220-98691239 None:intergenic 25.0%
! TCTATATATGCAGAATAATG+AGG + chr6_3:98691550-98691569 Msa0968360:intron 25.0%
!! TTATTTGACTTCGTTTGTAA+TGG + chr6_3:98691945-98691964 Msa0968360:intron 25.0%
! CCAATCTATAATGAAAATTC+GGG - chr6_3:98691983-98692002 None:intergenic 25.0%
! CCCAATCTATAATGAAAATT+CGG - chr6_3:98691984-98692003 None:intergenic 25.0%
!! CCGAATTTTCATTATAGATT+GGG + chr6_3:98691981-98692000 Msa0968360:intron 25.0%
!! CGAATTTTCATTATAGATTG+GGG + chr6_3:98691982-98692001 Msa0968360:intron 25.0%
!! CAATTTGTTCTTTAGATTGT+AGG - chr6_3:98692024-98692043 None:intergenic 25.0%
! TTTGAAGATCTATATAGAAG+AGG + chr6_3:98692616-98692635 Msa0968360:intron 25.0%
! ATGACAACTGAAAATAACTT+AGG + chr6_3:98692738-98692757 Msa0968360:intron 25.0%
! ATTATGCAAAAAAATCAACG+TGG - chr6_3:98692851-98692870 None:intergenic 25.0%
!! TTTTTGCCAATAGAGATATT+TGG + chr6_3:98692923-98692942 Msa0968360:intron 25.0%
! GTTTGGATACACATAAAAAT+AGG - chr6_3:98693874-98693893 None:intergenic 25.0%
AATACATGTTCCTGTAAAGA+GGG - chr6_3:98690447-98690466 None:intergenic 30.0%
TAATACATGTTCCTGTAAAG+AGG - chr6_3:98690448-98690467 None:intergenic 30.0%
ATCTTTCACTTCATTCATTC+AGG + chr6_3:98690548-98690567 Msa0968360:five_prime_UTR 30.0%
!!! TTAGCATGTTTTAATCTGTG+TGG - chr6_3:98690821-98690840 None:intergenic 30.0%
! ATTTTCATACCTTTGAGTCA+GGG - chr6_3:98691027-98691046 None:intergenic 30.0%
! TATTTTCATACCTTTGAGTC+AGG - chr6_3:98691028-98691047 None:intergenic 30.0%
TTGTAATTTCAGCAACATGA+TGG - chr6_3:98691267-98691286 None:intergenic 30.0%
! TCAAGATTCAAACAGCTTTT+CGG + chr6_3:98691398-98691417 Msa0968360:CDS 30.0%
GCGAACAAATTTGAAAATGA+GGG - chr6_3:98691451-98691470 None:intergenic 30.0%
AGCGAACAAATTTGAAAATG+AGG - chr6_3:98691452-98691471 None:intergenic 30.0%
AGATTGAAAACATTGATGGA+AGG + chr6_3:98691697-98691716 Msa0968360:CDS 30.0%
GATTGAAAACATTGATGGAA+GGG + chr6_3:98691698-98691717 Msa0968360:CDS 30.0%
AAATGCTAATCTCTCAACAT+TGG + chr6_3:98691914-98691933 Msa0968360:intron 30.0%
! CCCGAATTTTCATTATAGAT+TGG + chr6_3:98691980-98691999 Msa0968360:intron 30.0%
! ATTTTCATTATAGATTGGGG+AGG + chr6_3:98691985-98692004 Msa0968360:intron 30.0%
TAGGAAACAAAAGTGAAGAA+AGG - chr6_3:98692594-98692613 None:intergenic 30.0%
CACTATCCAAATATCTCTAT+TGG - chr6_3:98692932-98692951 None:intergenic 30.0%
CAATAGAGATATTTGGATAG+TGG + chr6_3:98692930-98692949 Msa0968360:intron 30.0%
ATAGGACATCACATAATATG+CGG - chr6_3:98692963-98692982 None:intergenic 30.0%
ATCTATGAATCCAATGTTTG+TGG + chr6_3:98693077-98693096 Msa0968360:CDS 30.0%
AGTCCATTAGCAAAAGAAAA+TGG + chr6_3:98693582-98693601 Msa0968360:CDS 30.0%
!!! TTGCCATTTTCTTTTGCTAA+TGG - chr6_3:98693588-98693607 None:intergenic 30.0%
AGAAAATGGCAAACAAGAAA+AGG + chr6_3:98693596-98693615 Msa0968360:CDS 30.0%
GAAAATGGCAAACAAGAAAA+GGG + chr6_3:98693597-98693616 Msa0968360:CDS 30.0%
AAAATGGCAAACAAGAAAAG+GGG + chr6_3:98693598-98693617 Msa0968360:CDS 30.0%
AGGACAGAAATCATTAAAGT+AGG + chr6_3:98693774-98693793 Msa0968360:three_prime_UTR 30.0%
GAAACTCTTGATTCTAAATG+TGG + chr6_3:98694128-98694147 Msa0968360:three_prime_UTR 30.0%
! TCTGATTTTTCCCTCTTTAC+AGG + chr6_3:98690434-98690453 Msa0968360:five_prime_UTR 35.0%
AGGAACATGTATTAAAGGTG+TGG + chr6_3:98690454-98690473 Msa0968360:five_prime_UTR 35.0%
! CATGTATTAAAGGTGTGGTT+TGG + chr6_3:98690459-98690478 Msa0968360:five_prime_UTR 35.0%
!! TATTAAAGGTGTGGTTTGGT+TGG + chr6_3:98690463-98690482 Msa0968360:five_prime_UTR 35.0%
CATACTACTACTAATAGGGA+AGG + chr6_3:98690702-98690721 Msa0968360:intron 35.0%
ACTACTAATAGGGAAGGATT+AGG + chr6_3:98690708-98690727 Msa0968360:intron 35.0%
AAGGAATGCCAAGAAGATAA+TGG + chr6_3:98690958-98690977 Msa0968360:exon 35.0%
AGGAATGCCAAGAAGATAAT+GGG + chr6_3:98690959-98690978 Msa0968360:exon 35.0%
!! AAGAAGATAATGGGGAAGAA+GGG + chr6_3:98690968-98690987 Msa0968360:exon 35.0%
AATTTAATATCTTCTGGCGG+AGG - chr6_3:98691217-98691236 None:intergenic 35.0%
TGTTGCTGAAATTACAACTG+TGG + chr6_3:98691270-98691289 Msa0968360:CDS 35.0%
! TCATTTTGCTGGTAAACCAA+AGG + chr6_3:98691360-98691379 Msa0968360:CDS 35.0%
! CAAGATTCAAACAGCTTTTC+GGG + chr6_3:98691399-98691418 Msa0968360:CDS 35.0%
! AAGATTCAAACAGCTTTTCG+GGG + chr6_3:98691400-98691419 Msa0968360:CDS 35.0%
!! CAGAATAATGAGGCTTTAAG+AGG + chr6_3:98691560-98691579 Msa0968360:intron 35.0%
AAAAGACAGTTTAGTCCGAA+AGG - chr6_3:98691629-98691648 None:intergenic 35.0%
GGTGAGATTGAAAACATTGA+TGG + chr6_3:98691693-98691712 Msa0968360:CDS 35.0%
AAACGAAGTCAAATAAGCGT+TGG - chr6_3:98691941-98691960 None:intergenic 35.0%
ATTATAGATTGGGGAGGAAT+GGG + chr6_3:98691991-98692010 Msa0968360:intron 35.0%
CTCATACTTGCTCAGTAATT+TGG - chr6_3:98692050-98692069 None:intergenic 35.0%
CAAATTACTGAGCAAGTATG+AGG + chr6_3:98692048-98692067 Msa0968360:CDS 35.0%
CTTGTTAACTTAGATATGCG+AGG + chr6_3:98692131-98692150 Msa0968360:intron 35.0%
CAGAACATAACATGAAAGCT+TGG - chr6_3:98692239-98692258 None:intergenic 35.0%
CAAGCTTTCATGTTATGTTC+TGG + chr6_3:98692237-98692256 Msa0968360:intron 35.0%
ATATGTCAACGACCATTGAT+CGG + chr6_3:98692303-98692322 Msa0968360:intron 35.0%
AACTGCTGATGAGAAAATCA+CGG - chr6_3:98692401-98692420 None:intergenic 35.0%
CAACAACTTCAAGTAGGATA+AGG - chr6_3:98692489-98692508 None:intergenic 35.0%
AAAGAGCAACAACTTCAAGT+AGG - chr6_3:98692495-98692514 None:intergenic 35.0%
! GTGAAGAAAGGTGACAATTT+TGG - chr6_3:98692582-98692601 None:intergenic 35.0%
TAGAAGAGGATGAAAACAAG+AGG + chr6_3:98692630-98692649 Msa0968360:intron 35.0%
AGAAGAGGATGAAAACAAGA+GGG + chr6_3:98692631-98692650 Msa0968360:intron 35.0%
GAAGATAGTGACTACATGAA+AGG - chr6_3:98692782-98692801 None:intergenic 35.0%
AAAAAAATCAACGTGGCAGT+GGG - chr6_3:98692844-98692863 None:intergenic 35.0%
AATGTATTTCAGAGTTGAGC+TGG - chr6_3:98693269-98693288 None:intergenic 35.0%
TCCATCAGTTCCAAGTTATA+TGG + chr6_3:98693515-98693534 Msa0968360:CDS 35.0%
ACCATATAACTTGGAACTGA+TGG - chr6_3:98693519-98693538 None:intergenic 35.0%
ATTCTTTACCATTGACCTTG+AGG + chr6_3:98693968-98693987 Msa0968360:three_prime_UTR 35.0%
TTCTTTACCATTGACCTTGA+GGG + chr6_3:98693969-98693988 Msa0968360:three_prime_UTR 35.0%
! CTTGTTGATGAAACACAGAA+TGG - chr6_3:98694051-98694070 None:intergenic 35.0%
CATTCTGTGTTTCATCAACA+AGG + chr6_3:98694049-98694068 Msa0968360:three_prime_UTR 35.0%
! TCTCTTGAAGAAGGTGCAAT+GGG - chr6_3:98690581-98690600 None:intergenic 40.0%
GGAAGGATTAGGAGTTTGAA+TGG + chr6_3:98690719-98690738 Msa0968360:intron 40.0%
GGAATGCCAAGAAGATAATG+GGG + chr6_3:98690960-98690979 Msa0968360:exon 40.0%
CTTCTTCCCCATTATCTTCT+TGG - chr6_3:98690969-98690988 None:intergenic 40.0%
!! CAAGAAGATAATGGGGAAGA+AGG + chr6_3:98690967-98690986 Msa0968360:exon 40.0%
TAATGGGGAAGAAGGGAAAT+TGG + chr6_3:98690975-98690994 Msa0968360:exon 40.0%
!! CTGTATCGATTTCTACAGAG+GGG - chr6_3:98691183-98691202 None:intergenic 40.0%
!! GCTGTATCGATTTCTACAGA+GGG - chr6_3:98691184-98691203 None:intergenic 40.0%
!! TGCTGTATCGATTTCTACAG+AGG - chr6_3:98691185-98691204 None:intergenic 40.0%
TGCTGAAATTACAACTGTGG+TGG + chr6_3:98691273-98691292 Msa0968360:CDS 40.0%
TGGTAAACCAAAGGATGAAG+TGG + chr6_3:98691369-98691388 Msa0968360:CDS 40.0%
!! TTTAGGCAAGAAGAGCATTG+CGG + chr6_3:98691656-98691675 Msa0968360:intron 40.0%
!! ATGGCTTGGCGTTTTACAAT+CGG - chr6_3:98691724-98691743 None:intergenic 40.0%
TGCAATCTCAGATTCGTTCT+AGG + chr6_3:98691779-98691798 Msa0968360:CDS 40.0%
! AATCTCAGATTCGTTCTAGG+AGG + chr6_3:98691782-98691801 Msa0968360:CDS 40.0%
!! ATCTCAGATTCGTTCTAGGA+GGG + chr6_3:98691783-98691802 Msa0968360:CDS 40.0%
CAGAATGTTAGAGGAGAATC+AGG + chr6_3:98691807-98691826 Msa0968360:CDS 40.0%
CATTATAGATTGGGGAGGAA+TGG + chr6_3:98691990-98692009 Msa0968360:intron 40.0%
ACTGCTGATGAGAAAATCAC+GGG - chr6_3:98692400-98692419 None:intergenic 40.0%
GAAGAGGATGAAAACAAGAG+GGG + chr6_3:98692632-98692651 Msa0968360:intron 40.0%
AAGAGGATGAAAACAAGAGG+GGG + chr6_3:98692633-98692652 Msa0968360:intron 40.0%
AGAGGTTTAAGCAGAGGAAA+TGG - chr6_3:98692809-98692828 None:intergenic 40.0%
CAAAAAAATCAACGTGGCAG+TGG - chr6_3:98692845-98692864 None:intergenic 40.0%
GTTCTTTATCAACAACGCCA+CGG - chr6_3:98693170-98693189 None:intergenic 40.0%
TTTCTCCACCTATAATGCTG+CGG - chr6_3:98693224-98693243 None:intergenic 40.0%
TTTCAGAGTTGAGCTGGAAA+CGG - chr6_3:98693263-98693282 None:intergenic 40.0%
GTTGAATTGGACTGAAAGCT+GGG - chr6_3:98693321-98693340 None:intergenic 40.0%
AGTTGAATTGGACTGAAAGC+TGG - chr6_3:98693322-98693341 None:intergenic 40.0%
CAATTCAACTCCTACTAAGC+CGG + chr6_3:98693332-98693351 Msa0968360:CDS 40.0%
AATTCAACTCCTACTAAGCC+GGG + chr6_3:98693333-98693352 Msa0968360:CDS 40.0%
AGTTGCTAGGAAACTGAAGA+AGG + chr6_3:98693365-98693384 Msa0968360:CDS 40.0%
ATCATCTCTAACTGATGACC+CGG - chr6_3:98693478-98693497 None:intergenic 40.0%
AAACAAGAAAAGGGGTCCTT+TGG + chr6_3:98693606-98693625 Msa0968360:CDS 40.0%
TTTATGGCGGTTTCTACCTT+CGG - chr6_3:98693696-98693715 None:intergenic 40.0%
AGGTAACTCTGCATTTATGG+CGG - chr6_3:98693709-98693728 None:intergenic 40.0%
CACAGGTAACTCTGCATTTA+TGG - chr6_3:98693712-98693731 None:intergenic 40.0%
TCTTTACCATTGACCTTGAG+GGG + chr6_3:98693970-98693989 Msa0968360:three_prime_UTR 40.0%
AACCAAATTTCTTCCCCTCA+AGG - chr6_3:98693986-98694005 None:intergenic 40.0%
GGTTCATGTTGATCTTGTGA+CGG + chr6_3:98694002-98694021 Msa0968360:three_prime_UTR 40.0%
GTTCATGTTGATCTTGTGAC+GGG + chr6_3:98694003-98694022 Msa0968360:three_prime_UTR 40.0%
TCTGTGTTTCATCAACAAGG+AGG + chr6_3:98694052-98694071 Msa0968360:three_prime_UTR 40.0%
! CTCTCTTGAAGAAGGTGCAA+TGG - chr6_3:98690582-98690601 None:intergenic 45.0%
! GCTGCAGTTTCTCATTTTGC+TGG + chr6_3:98691349-98691368 Msa0968360:CDS 45.0%
! ATTGCTGCCACTTCATCCTT+TGG - chr6_3:98691379-98691398 None:intergenic 45.0%
!! AACAGCTTTTCGGGGATACT+TGG + chr6_3:98691408-98691427 Msa0968360:CDS 45.0%
!! TTAGGCAAGAAGAGCATTGC+GGG + chr6_3:98691657-98691676 Msa0968360:intron 45.0%
TAGGAGGGTCAGAATGTTAG+AGG + chr6_3:98691798-98691817 Msa0968360:CDS 45.0%
! TATGCGAAGAGAAAGAGCAC+TGG + chr6_3:98692075-98692094 Msa0968360:CDS 45.0%
GGCTTATGCATTCACTCATC+AGG + chr6_3:98692096-98692115 Msa0968360:CDS 45.0%
TTGGTGGGATCCACAAACAT+TGG - chr6_3:98693090-98693109 None:intergenic 45.0%
TTCAGAGTTGAGCTGGAAAC+GGG - chr6_3:98693262-98693281 None:intergenic 45.0%
CGGCTTAGTAGGAGTTGAAT+TGG - chr6_3:98693334-98693353 None:intergenic 45.0%
TCCAAAGGGAAGTTGGGTTA+TGG + chr6_3:98693392-98693411 Msa0968360:CDS 45.0%
TCCATAACCCAACTTCCCTT+TGG - chr6_3:98693396-98693415 None:intergenic 45.0%
GGATGATGACTCCAAAAGCA+TGG + chr6_3:98693413-98693432 Msa0968360:CDS 45.0%
! CTGTACACTTGCCATGCTTT+TGG - chr6_3:98693427-98693446 None:intergenic 45.0%
TGGCAAGTGTACAGTCAGAT+CGG + chr6_3:98693433-98693452 Msa0968360:CDS 45.0%
TGAGTCGGCACCATATAACT+TGG - chr6_3:98693528-98693547 None:intergenic 45.0%
! CTAGCTTTCGCAGATTGAGT+CGG - chr6_3:98693543-98693562 None:intergenic 45.0%
!! GAAAAAGCGCCTTTCTTACC+CGG + chr6_3:98693635-98693654 Msa0968360:CDS 45.0%
TTTCTTCCCCTCAAGGTCAA+TGG - chr6_3:98693979-98693998 None:intergenic 45.0%
GACCTTGAGGGGAAGAAATT+TGG + chr6_3:98693981-98694000 Msa0968360:three_prime_UTR 45.0%
!!! ATTTTAATTATAATTACAAA+AGG - chr6_3:98692712-98692731 None:intergenic 5.0%
ATATCTTCTGGCGGAGGAAG+AGG - chr6_3:98691211-98691230 None:intergenic 50.0%
!! TACAACTGTGGTGGATGTCG+AGG + chr6_3:98691282-98691301 Msa0968360:CDS 50.0%
GCTGTCTGAACAGAACGAAC+AGG - chr6_3:98691310-98691329 None:intergenic 50.0%
!! AGAGCATTGCGGGCTTTAAG+AGG + chr6_3:98691667-98691686 Msa0968360:CDS 50.0%
!! GAGCATTGCGGGCTTTAAGA+GGG + chr6_3:98691668-98691687 Msa0968360:CDS 50.0%
TAACGTCTGCATTGAGCGGA+GGG - chr6_3:98691752-98691771 None:intergenic 50.0%
GAGCTAACGTCTGCATTGAG+CGG - chr6_3:98691756-98691775 None:intergenic 50.0%
! AGCTCTTACAGAAGCACGCA+AGG + chr6_3:98691842-98691861 Msa0968360:CDS 50.0%
! GCTCTTACAGAAGCACGCAA+GGG + chr6_3:98691843-98691862 Msa0968360:CDS 50.0%
CAAGGGAGCTTGAAACCATG+CGG + chr6_3:98691860-98691879 Msa0968360:CDS 50.0%
AAGGGAGCTTGAAACCATGC+GGG + chr6_3:98691861-98691880 Msa0968360:CDS 50.0%
AGCTTGAAACCATGCGGGTA+TGG + chr6_3:98691866-98691885 Msa0968360:intron 50.0%
GCTTGAAACCATGCGGGTAT+GGG + chr6_3:98691867-98691886 Msa0968360:intron 50.0%
GAAAGAAACCCATACCCGCA+TGG - chr6_3:98691878-98691897 None:intergenic 50.0%
GGTTGCAGAGGTTTAAGCAG+AGG - chr6_3:98692815-98692834 None:intergenic 50.0%
AATCAACGTGGCAGTGGGAA+AGG - chr6_3:98692839-98692858 None:intergenic 50.0%
TGGATCCCACCAATCCTACT+TGG + chr6_3:98693097-98693116 Msa0968360:CDS 50.0%
GGATCCCACCAATCCTACTT+GGG + chr6_3:98693098-98693117 Msa0968360:CDS 50.0%
GATCCCACCAATCCTACTTG+GGG + chr6_3:98693099-98693118 Msa0968360:CDS 50.0%
ATCCCACCAATCCTACTTGG+GGG + chr6_3:98693100-98693119 Msa0968360:CDS 50.0%
GAGCTGGATAGAACGATGGA+TGG + chr6_3:98693125-98693144 Msa0968360:CDS 50.0%
AGTTCGAGCCGCAGCATTAT+AGG + chr6_3:98693213-98693232 Msa0968360:CDS 50.0%
CTAGCAACTGAAGCAGAACC+CGG - chr6_3:98693354-98693373 None:intergenic 50.0%
ACTGAAGAAGGCGAGTCCAA+AGG + chr6_3:98693377-98693396 Msa0968360:CDS 50.0%
CTGAAGAAGGCGAGTCCAAA+GGG + chr6_3:98693378-98693397 Msa0968360:CDS 50.0%
CGACTCAATCTGCGAAAGCT+AGG + chr6_3:98693541-98693560 Msa0968360:CDS 50.0%
!!! GCGCTTTTTCGCAGTTCCAA+AGG - chr6_3:98693625-98693644 None:intergenic 50.0%
GCAGAGTTACCTGTGAGCAA+TGG + chr6_3:98693717-98693736 Msa0968360:CDS 50.0%
GTTACCTGTGAGCAATGGTG+TGG + chr6_3:98693722-98693741 Msa0968360:CDS 50.0%
! CATGTTGATCTTGTGACGGG+AGG + chr6_3:98694006-98694025 Msa0968360:three_prime_UTR 50.0%
AGCTCTCAGCCCTGACTCAA+AGG + chr6_3:98691015-98691034 Msa0968360:CDS 55.0%
!! ATTGCGGGCTTTAAGAGGGC+TGG + chr6_3:98691672-98691691 Msa0968360:CDS 55.0%
!! CATTGAGCGGAGGGTACTCA+TGG - chr6_3:98691743-98691762 None:intergenic 55.0%
CTAACGTCTGCATTGAGCGG+AGG - chr6_3:98691753-98691772 None:intergenic 55.0%
AGTGGGAAAGGAGGTTGCAG+AGG - chr6_3:98692827-98692846 None:intergenic 55.0%
! CACCCCCAAGTAGGATTGGT+GGG - chr6_3:98693105-98693124 None:intergenic 55.0%
GGTGGAGCTGGATAGAACGA+TGG + chr6_3:98693121-98693140 Msa0968360:CDS 55.0%
TCGAGCCGCAGCATTATAGG+TGG + chr6_3:98693216-98693235 Msa0968360:CDS 55.0%
!!! CCAGGATTTTGGCTCGCTAC+TGG - chr6_3:98693294-98693313 None:intergenic 55.0%
CCAGTAGCGAGCCAAAATCC+TGG + chr6_3:98693291-98693310 Msa0968360:CDS 55.0%
! AGCTGGGTGAGCCAGGATTT+TGG - chr6_3:98693305-98693324 None:intergenic 55.0%
GAAGCAGAACCCGGCTTAGT+AGG - chr6_3:98693345-98693364 None:intergenic 55.0%
CGGGTTCTGCTTCAGTTGCT+AGG + chr6_3:98693352-98693371 Msa0968360:CDS 55.0%
AGGCGAGTCCAAAGGGAAGT+TGG + chr6_3:98693385-98693404 Msa0968360:CDS 55.0%
GGCGAGTCCAAAGGGAAGTT+GGG + chr6_3:98693386-98693405 Msa0968360:CDS 55.0%
! TACAGTCAGATCGGTTCCGC+AGG + chr6_3:98693442-98693461 Msa0968360:CDS 55.0%
TTCCGCAGGCACTCTATTGC+CGG + chr6_3:98693456-98693475 Msa0968360:CDS 55.0%
ATGGCGGTTTCTACCTTCGG+TGG - chr6_3:98693693-98693712 None:intergenic 55.0%
TCTTCTGGCGGAGGAAGAGG+CGG - chr6_3:98691208-98691227 None:intergenic 60.0%
!! AGCGGAGGGTACTCATGGCT+TGG - chr6_3:98691738-98691757 None:intergenic 60.0%
CAACGTGGCAGTGGGAAAGG+AGG - chr6_3:98692836-98692855 None:intergenic 60.0%
CCACCCCCAAGTAGGATTGG+TGG - chr6_3:98693106-98693125 None:intergenic 60.0%
CCACCAATCCTACTTGGGGG+TGG + chr6_3:98693103-98693122 Msa0968360:CDS 60.0%
GCTCCACCCCCAAGTAGGAT+TGG - chr6_3:98693109-98693128 None:intergenic 60.0%
ATCCTACTTGGGGGTGGAGC+TGG + chr6_3:98693109-98693128 Msa0968360:CDS 60.0%
ATCCAGCTCCACCCCCAAGT+AGG - chr6_3:98693114-98693133 None:intergenic 60.0%
ATGGATGGCTGCCCGACCTT+GGG + chr6_3:98693140-98693159 Msa0968360:CDS 60.0%
GACTGAAAGCTGGGTGAGCC+AGG - chr6_3:98693312-98693331 None:intergenic 60.0%
TCCGCAGGCACTCTATTGCC+GGG + chr6_3:98693457-98693476 Msa0968360:CDS 60.0%
! ACCCGGCAATAGAGTGCCTG+CGG - chr6_3:98693461-98693480 None:intergenic 60.0%
CAGGCGAAGCCGGGTAAGAA+AGG - chr6_3:98693647-98693666 None:intergenic 60.0%
GGTGGACCTGAATGACGCCT+TGG - chr6_3:98693675-98693694 None:intergenic 60.0%
GCGTCATTCAGGTCCACCGA+AGG + chr6_3:98693677-98693696 Msa0968360:CDS 60.0%
CTGGCCACACCATTGCTCAC+AGG - chr6_3:98693729-98693748 None:intergenic 60.0%
GATGGATGGCTGCCCGACCT+TGG + chr6_3:98693139-98693158 Msa0968360:CDS 65.0%
ACAACGCCACGGCTCTCCCA+AGG - chr6_3:98693159-98693178 None:intergenic 65.0%
GAATGACGCCTTGGCCTCGC+AGG - chr6_3:98693666-98693685 None:intergenic 65.0%
! GCGAGGCCAAGGCGTCATTC+AGG + chr6_3:98693666-98693685 Msa0968360:CDS 65.0%
GCCACGGCTCTCCCAAGGTC+GGG - chr6_3:98693154-98693173 None:intergenic 70.0%
CGCCACGGCTCTCCCAAGGT+CGG - chr6_3:98693155-98693174 None:intergenic 70.0%
CTTACCCGGCTTCGCCTGCG+AGG + chr6_3:98693649-98693668 Msa0968360:CDS 70.0%
TTGGCCTCGCAGGCGAAGCC+GGG - chr6_3:98693656-98693675 None:intergenic 70.0%
CTTGGCCTCGCAGGCGAAGC+CGG - chr6_3:98693657-98693676 None:intergenic 70.0%
GCCCGACCTTGGGAGAGCCG+TGG + chr6_3:98693150-98693169 Msa0968360:CDS 75.0%
CGGCTTCGCCTGCGAGGCCA+AGG + chr6_3:98693655-98693674 Msa0968360:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98690392 98694245 98690392 ID=Msa0968360;Name=Msa0968360
chr6_3 mRNA 98690392 98694245 98690392 ID=Msa0968360-mRNA-1;Parent=Msa0968360;Name=Msa0968360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=206|1|1|1|0.8|0.83|6|493|468
chr6_3 exon 98690392 98690569 98690392 ID=Msa0968360-mRNA-1:exon:18567;Parent=Msa0968360-mRNA-1
chr6_3 exon 98690949 98691036 98690949 ID=Msa0968360-mRNA-1:exon:18568;Parent=Msa0968360-mRNA-1
chr6_3 exon 98691124 98691429 98691124 ID=Msa0968360-mRNA-1:exon:18569;Parent=Msa0968360-mRNA-1
chr6_3 exon 98691661 98691882 98691661 ID=Msa0968360-mRNA-1:exon:18570;Parent=Msa0968360-mRNA-1
chr6_3 exon 98691998 98692117 98691998 ID=Msa0968360-mRNA-1:exon:18571;Parent=Msa0968360-mRNA-1
chr6_3 exon 98693054 98694245 98693054 ID=Msa0968360-mRNA-1:exon:18572;Parent=Msa0968360-mRNA-1
chr6_3 five_prime_UTR 98690392 98690569 98690392 ID=Msa0968360-mRNA-1:five_prime_utr;Parent=Msa0968360-mRNA-1
chr6_3 five_prime_UTR 98690949 98690976 98690949 ID=Msa0968360-mRNA-1:five_prime_utr;Parent=Msa0968360-mRNA-1
chr6_3 CDS 98690977 98691036 98690977 ID=Msa0968360-mRNA-1:cds;Parent=Msa0968360-mRNA-1
chr6_3 CDS 98691124 98691429 98691124 ID=Msa0968360-mRNA-1:cds;Parent=Msa0968360-mRNA-1
chr6_3 CDS 98691661 98691882 98691661 ID=Msa0968360-mRNA-1:cds;Parent=Msa0968360-mRNA-1
chr6_3 CDS 98691998 98692117 98691998 ID=Msa0968360-mRNA-1:cds;Parent=Msa0968360-mRNA-1
chr6_3 CDS 98693054 98693752 98693054 ID=Msa0968360-mRNA-1:cds;Parent=Msa0968360-mRNA-1
chr6_3 three_prime_UTR 98693753 98694245 98693753 ID=Msa0968360-mRNA-1:three_prime_utr;Parent=Msa0968360-mRNA-1
Gene Sequence

>Msa0968360

ATGGGGAAGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAATCAAAAAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGACCCCTCTGTAGAAATCGATACAGCACCGCCTCTTCCTCCGCCAGAAGATATTAAATTAACTGATATTGAAAATCAAAACAATCACCATCATGTTGCTGAAATTACAACTGTGGTGGATGTCGAGGAACCTGTTCGTTCTGTTCAGACAGCAGTTGTTAAGACTCAAGCTGCTGCAGTTTCTCATTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGCTGGTGAGATTGAAAACATTGATGGAAGGGCCGATTGTAAAACGCCAAGCCATGAGTACCCTCCGCTCAATGCAGACGTTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGGTCAGAATGTTAGAGGAGAATCAGGCTTTACAGAGACAGCTCTTACAGAAGCACGCAAGGGAGCTTGAAACCATGCGGATTGGGGAGGAATGGGACGATAGCCTACAATCTAAAGAACAAATTGAAGCCAAATTACTGAGCAAGTATGAGGCTACTATGCGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTCGAAGAACTCGTCTAGATCTATGAATCCAATGTTTGTGGATCCCACCAATCCTACTTGGGGGTGGAGCTGGATAGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGTGGCGTTGTTGATAAAGAACTGAATGATCATTCATCTGTTAAAAGTTCGAGCCGCAGCATTATAGGTGGAGAAATCAGCAAATCATTTGCCCGTTTCCAGCTCAACTCTGAAATACATTCTCCAGTAGCGAGCCAAAATCCTGGCTCACCCAGCTTTCAGTCCAATTCAACTCCTACTAAGCCGGGTTCTGCTTCAGTTGCTAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGTTGGGTTATGGATGATGACTCCAAAAGCATGGCAAGTGTACAGTCAGATCGGTTCCGCAGGCACTCTATTGCCGGGTCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCAAGTTATATGGTGCCGACTCAATCTGCGAAAGCTAGGTTGAGAACACAAAGTCAAAGTCCATTAGCAAAAGAAAATGGCAAACAAGAAAAGGGGTCCTTTGGAACTGCGAAAAAGCGCCTTTCTTACCCGGCTTCGCCTGCGAGGCCAAGGCGTCATTCAGGTCCACCGAAGGTAGAAACCGCCATAAATGCAGAGTTACCTGTGAGCAATGGTGTGGCCAGTTGA
Protein sequence

>Msa0968360

MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSVEIDTAPPLPPPEDIKLTDIENQNNHHHVAEITTVVDVEEPVRSVQTAVVKTQAAAVSHFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDDSLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNSKNSSRSMNPMFVDPTNPTWGWSWIERWMAARPWESRGVVDKELNDHSSVKSSSRSIIGGEISKSFARFQLNSEIHSPVASQNPGSPSFQSNSTPTKPGSASVARKLKKASPKGSWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARLRTQSQSPLAKENGKQEKGSFGTAKKRLSYPASPARPRRHSGPPKVETAINAELPVSNGVAS*