AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560330 MtrunA17_Chr4g0050371 95.861 604 25 0 1 604 1 604 0.0 1188
Msa0560330 MtrunA17_Chr8g0393041 51.753 599 282 3 5 602 1 593 0.0 556
Msa0560330 MtrunA17_Chr1g0191741 47.518 423 214 3 48 467 6 423 1.10e-127 382
Msa0560330 MtrunA17_Chr2g0279961 39.333 150 90 1 72 221 195 343 6.33e-23 103
Msa0560330 MtrunA17_Chr3g0097231 42.373 118 68 0 484 601 7 124 5.58e-18 87.0
Msa0560330 MtrunA17_Chr1g0192811 45.000 100 54 1 492 591 95 193 8.09e-18 86.7
Msa0560330 MtrunA17_Chr8g0384851 40.000 150 89 1 72 221 202 350 1.54e-14 77.0
Msa0560330 MtrunA17_Chr8g0385461 31.126 151 97 3 73 222 226 370 4.55e-14 75.5
Msa0560330 MtrunA17_Chr3g0097801 41.406 128 75 0 119 246 151 278 1.03e-13 73.9
Msa0560330 MtrunA17_Chr3g0130801 37.333 150 92 1 72 221 266 413 1.78e-13 73.6
Msa0560330 MtrunA17_Chr8g0377651 38.843 121 68 2 107 222 138 257 3.19e-12 69.3
Msa0560330 MtrunA17_Chr5g0398901 36.000 100 64 0 492 591 396 495 5.20e-12 68.6
Msa0560330 MtrunA17_Chr2g0323971 31.667 120 75 1 492 604 102 221 5.22e-12 66.6
Msa0560330 MtrunA17_Chr8g0377641 35.461 141 82 4 107 242 135 271 6.14e-12 68.2
Msa0560330 MtrunA17_Chr1g0160051 34.848 132 76 3 460 590 162 284 6.45e-12 68.2
Msa0560330 MtrunA17_Chr8g0377681 34.752 141 83 3 107 242 135 271 1.02e-11 67.8
Msa0560330 MtrunA17_Chr2g0316221 35.632 87 56 0 494 580 468 554 1.51e-11 67.4
Msa0560330 MtrunA17_Chr1g0166441 33.929 112 74 0 491 602 14 125 1.53e-11 65.9
Msa0560330 MtrunA17_Chr7g0237741 30.000 120 77 1 492 604 99 218 7.10e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560330 AT5G09420.1 63.018 603 219 4 1 601 1 601 0.0 764
Msa0560330 AT3G17970.1 52.035 565 270 1 39 602 24 588 0.0 530
Msa0560330 AT3G17970.2 50.677 517 254 1 39 554 24 540 1.42e-159 469
Msa0560330 AT1G08980.1 46.635 416 214 3 48 458 6 418 1.32e-116 353
Msa0560330 AT5G64440.1 38.235 170 104 1 72 241 196 364 2.16e-22 102
Msa0560330 AT2G42810.2 39.344 122 74 0 480 601 5 126 2.38e-18 89.0
Msa0560330 AT2G42810.3 39.344 122 74 0 480 601 5 126 2.48e-18 89.0
Msa0560330 AT2G42810.1 39.344 122 74 0 480 601 5 126 2.79e-18 88.6
Msa0560330 AT2G42810.5 39.344 122 74 0 480 601 5 126 2.79e-18 88.6
Msa0560330 AT2G42810.4 39.344 122 74 0 480 601 5 126 2.79e-18 88.6
Msa0560330 AT1G56440.2 46.000 100 53 1 492 591 78 176 1.50e-17 86.3
Msa0560330 AT1G56440.1 46.000 100 53 1 492 591 88 186 1.58e-17 86.3
Msa0560330 AT5G07360.1 30.415 217 135 5 73 280 268 477 1.90e-17 86.7
Msa0560330 AT5G07360.3 30.415 217 135 5 73 280 268 477 1.90e-17 86.7
Msa0560330 AT1G04190.1 39.316 117 71 0 486 602 13 129 9.93e-15 76.3
Msa0560330 AT4G08320.1 39.496 119 67 2 488 601 175 293 2.59e-14 75.9
Msa0560330 AT3G25660.1 42.188 128 74 0 119 246 152 279 5.08e-14 75.5
Msa0560330 AT4G08320.2 42.308 104 59 1 488 590 175 278 8.21e-14 74.3
Msa0560330 AT1G62740.1 37.500 120 69 2 479 598 379 492 8.38e-13 71.6
Msa0560330 AT4G12400.1 36.036 111 71 0 488 598 369 479 2.52e-12 70.1
Msa0560330 AT4G12400.2 36.036 111 71 0 488 598 369 479 2.66e-12 70.1
Msa0560330 AT1G12270.1 36.449 107 68 0 492 598 387 493 3.66e-12 69.7
Msa0560330 AT5G07360.2 28.111 217 133 6 73 280 268 470 4.75e-12 69.3
Msa0560330 AT3G58620.2 27.481 131 95 0 474 604 435 565 5.32e-11 66.2
Msa0560330 AT3G58620.1 27.481 131 95 0 474 604 435 565 8.30e-11 65.5

Find 171 sgRNAs with CRISPR-Local

Find 693 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACCCATTCTTCATAAT+TGG 0.173263 4_1:+59604631 None:intergenic
GTTATGGATGAATTCTCTTT+TGG 0.178620 4_1:-59608023 Msa0560330:CDS
TGCATTTCAAAGTCTGTTAA+AGG 0.191955 4_1:-59604498 Msa0560330:intron
GAAATATTAATATATGATTT+TGG 0.209198 4_1:-59600449 Msa0560330:three_prime_UTR
ATTATCGTATGTAGTATTAA+TGG 0.214628 4_1:+59604559 None:intergenic
ATATATGGGTGCAAAATTAT+TGG 0.224492 4_1:+59600282 None:intergenic
TTGTGAGTATATTGCTAAAA+AGG 0.228126 4_1:-59606242 Msa0560330:CDS
AATACTCCTAAACCTGATTT+TGG 0.231794 4_1:-59609376 Msa0560330:CDS
CTAGGTCAACCTTATATATA+TGG 0.241147 4_1:+59600267 None:intergenic
TCAGAGAAAATGTGTGAAAT+TGG 0.282501 4_1:+59609538 None:intergenic
TTCTTTGCATTAAGCTTTAG+TGG 0.296935 4_1:+59603829 None:intergenic
TCTGGTGAGAACAAGTATTA+TGG 0.298777 4_1:-59607907 Msa0560330:CDS
AATGGCTTCATAAACATGTT+TGG 0.301329 4_1:+59604577 None:intergenic
AAGGGCTATGTGACGGGGTT+TGG 0.313527 4_1:-59608143 Msa0560330:CDS
GTGACCGCTCTGCTCTTCAA+TGG 0.315280 4_1:-59608068 Msa0560330:CDS
GAAATATTATTCAACCCTAT+TGG 0.317227 4_1:-59600311 Msa0560330:three_prime_UTR
CAATCGGCACCCCAACAAAA+TGG 0.333193 4_1:-59606196 Msa0560330:CDS
AATTATTGGCAAAATCCAAT+AGG 0.334147 4_1:+59600296 None:intergenic
TCCGACGATTAACCAGAGTT+TGG 0.334376 4_1:+59609459 None:intergenic
AGAAACGAACGTGTCACTTA+TGG 0.335088 4_1:+59609267 None:intergenic
GCAATCACTGAAGCTGATTA+AGG 0.335684 4_1:-59609497 Msa0560330:CDS
TGACCGCTCTGCTCTTCAAT+GGG 0.338248 4_1:-59608067 Msa0560330:CDS
TAAGGCAGTCACTCACTATA+CGG 0.344676 4_1:-59601613 Msa0560330:CDS
TTGTGTTGGCAAGACTGTTA+TGG 0.346517 4_1:-59608039 Msa0560330:CDS
TTCCAGGTTACGATTCCTTT+AGG 0.348668 4_1:-59603632 Msa0560330:intron
ATGGCTTCATAAACATGTTT+GGG 0.355692 4_1:+59604578 None:intergenic
CTCTGGTTAATCGTCGGAAT+TGG 0.363824 4_1:-59609454 Msa0560330:CDS
TCAATAAAAGCACCAAAATC+AGG 0.365289 4_1:+59609364 None:intergenic
AAAGCACCAAAATCAGGTTT+AGG 0.377993 4_1:+59609370 None:intergenic
AGAATCACTACTTCGGTATA+AGG 0.382326 4_1:-59600951 Msa0560330:CDS
TTAAATCCAATTATGAAGAA+TGG 0.384162 4_1:-59604637 Msa0560330:CDS
TCCAGCATTGCCAGTATGTC+TGG 0.384164 4_1:-59603766 Msa0560330:CDS
GTGTCTAAGCTTTGTGCATT+TGG 0.384633 4_1:+59606913 None:intergenic
TTGGAGGGAGGGAGGGAGGG+AGG 0.386138 4_1:+59600497 None:intergenic
ATTTCTTCTAGACACTATCT+TGG 0.392742 4_1:-59603552 Msa0560330:CDS
CCGACGATTAACCAGAGTTT+GGG 0.396429 4_1:+59609460 None:intergenic
ATTATTGGCAAAATCCAATA+GGG 0.403213 4_1:+59600297 None:intergenic
GGTTGAATAATATTTCTAAC+AGG 0.404852 4_1:+59600318 None:intergenic
GGCAATATTGCTTGATAAGA+AGG 0.406807 4_1:-59601402 Msa0560330:intron
CTTTAAAAGTTCAGAAGGTT+CGG 0.418299 4_1:+59603454 None:intergenic
TCACTTGGAGGGAGGGAGGG+AGG 0.419009 4_1:+59600493 None:intergenic
TCGGTATTTCCATTGATGTT+TGG 0.419040 4_1:+59603473 None:intergenic
TTTCCATTGATGTTTGGTAA+TGG 0.420732 4_1:+59603479 None:intergenic
TAAATCCAATTATGAAGAAT+GGG 0.421215 4_1:-59604636 Msa0560330:CDS
GGACTTGTTGATTTCGCCAT+TGG 0.422961 4_1:-59607808 Msa0560330:intron
GGAGGAGGAGGCTGAGGAAA+GGG 0.431169 4_1:+59609325 None:intergenic
GACGTGAAGGGCTATGTGAC+GGG 0.431364 4_1:-59608149 Msa0560330:CDS
TTCAATGGGGCTACTTGTGT+TGG 0.433681 4_1:-59608053 Msa0560330:CDS
CTAAAGCTTAATGCAAAGAA+AGG 0.434040 4_1:-59603826 Msa0560330:CDS
TCACAAAGATCCATATGCTT+TGG 0.436397 4_1:+59606259 None:intergenic
CGGTATAAGGAGGCTCTTGA+AGG 0.436879 4_1:-59600938 Msa0560330:intron
TGCTTGGCGGCAGGAGGAGG+AGG 0.439066 4_1:+59609313 None:intergenic
CAGTATGTCTGGTTGTTGTC+AGG 0.442962 4_1:-59603755 Msa0560330:intron
GCGGCAGGAGGAGGAGGCTG+AGG 0.443794 4_1:+59609319 None:intergenic
TAAAGAAAAGCAATGGGATA+AGG 0.445790 4_1:-59601631 Msa0560330:CDS
CTTCAAGAGCAGGCTAGCTC+TGG 0.449151 4_1:-59603515 Msa0560330:CDS
ACCAGACATACTGGCAATGC+TGG 0.449374 4_1:+59603765 None:intergenic
CACTTGGAGGGAGGGAGGGA+GGG 0.449925 4_1:+59600494 None:intergenic
CTGACAACAACCAGACATAC+TGG 0.453346 4_1:+59603756 None:intergenic
AGGAGGAGGAGGCTGAGGAA+AGG 0.454392 4_1:+59609324 None:intergenic
AGTTGCTTGGCGGCAGGAGG+AGG 0.455403 4_1:+59609310 None:intergenic
ATTCCATTACCAAACATCAA+TGG 0.455429 4_1:-59603482 Msa0560330:CDS
GATGGCATCTGAGGATTAGT+TGG 0.461796 4_1:+59607880 None:intergenic
TCAGATGCCATCGTGTGTCC+CGG 0.468335 4_1:-59607869 Msa0560330:CDS
TCAAAATACCTTCATTCTGA+AGG 0.471013 4_1:+59600404 None:intergenic
TTGCTCATGAAGCCTTAGAC+TGG 0.473607 4_1:+59606216 None:intergenic
GTTTCATTCATCTCAAACCA+TGG 0.474484 4_1:-59603584 Msa0560330:CDS
AAAGCTATCGAGAATATGTC+TGG 0.475596 4_1:-59606455 Msa0560330:CDS
TAAAAGCCTTGTATAAAGTC+AGG 0.480272 4_1:-59604535 Msa0560330:CDS
TGCTAATCTTGCTGTGCAAA+GGG 0.481993 4_1:-59600552 Msa0560330:CDS
TTCTCCTTTAAAAGTTCAGA+AGG 0.483289 4_1:+59603449 None:intergenic
CTCATGCCTGACTTTATACA+AGG 0.486729 4_1:+59604529 None:intergenic
GAAAGAAGTTGCTTGGCGGC+AGG 0.487428 4_1:+59609304 None:intergenic
CAAAAGACAATATATGTCAT+TGG 0.487661 4_1:-59606479 Msa0560330:CDS
ATAATGCAAAACTTCTATCA+TGG 0.489308 4_1:+59603788 None:intergenic
ATGATTTAAAGAAAATATGA+TGG 0.491303 4_1:+59600215 None:intergenic
TATATTGAAAACCCTCTCTT+CGG 0.493411 4_1:-59606167 Msa0560330:CDS
GATTAACCAGAGTTTGGGAT+TGG 0.495718 4_1:+59609465 None:intergenic
GAAGAGAACGCACGAGGAGG+CGG 0.498920 4_1:-59608108 Msa0560330:CDS
AAAATACCACAAAGTGATGC+TGG 0.501603 4_1:+59606982 None:intergenic
GGCATTTAAAGAAAAGCAAT+GGG 0.504101 4_1:-59601637 Msa0560330:CDS
AAGGCAGTCACTCACTATAC+GGG 0.504378 4_1:-59601612 Msa0560330:CDS
CTGCTTGCTTAAAGCTAGGA+TGG 0.504647 4_1:-59601539 Msa0560330:intron
CAGATGCCATCGTGTGTCCC+GGG 0.504741 4_1:-59607868 Msa0560330:CDS
AGAATTCCAGCATCACTTTG+TGG 0.510332 4_1:-59606988 Msa0560330:CDS
AGATCAGGCTCCAAAGCATA+TGG 0.512614 4_1:-59606269 Msa0560330:CDS
TAGGTCAACCTTATATATAT+GGG 0.512626 4_1:+59600268 None:intergenic
TAGTGGACTGTCTGCTACAG+AGG 0.513302 4_1:+59603846 None:intergenic
TAAAATGTACAGAGGCTACT+AGG 0.514363 4_1:+59600249 None:intergenic
ATTGATGTTTGGTAATGGAA+TGG 0.516512 4_1:+59603484 None:intergenic
TCTAAGGCTTCATGAGCAAT+CGG 0.518298 4_1:-59606212 Msa0560330:CDS
CGGTTATGCTTTCAATACAA+AGG 0.519788 4_1:-59606147 Msa0560330:intron
GTATACAGCTCTTCAAGAGC+AGG 0.523402 4_1:-59603525 Msa0560330:CDS
TATTGCGGCAGCGTCTTCTA+CGG 0.524498 4_1:+59609395 None:intergenic
ATGCTAATCTTGCTGTGCAA+AGG 0.528129 4_1:-59600553 Msa0560330:CDS
CAATCATCATGATATCCTAA+AGG 0.531757 4_1:+59603617 None:intergenic
GAGAGAAGAAAGAAGTTGCT+TGG 0.532175 4_1:+59609297 None:intergenic
TCGGAATTGGACTCGCCGGC+GGG 0.532317 4_1:-59609441 Msa0560330:CDS
AAAATCAATAGCTGTGGATG+TGG 0.535008 4_1:-59600471 Msa0560330:three_prime_UTR
TTGAAAGCATAACCGAAGAG+AGG 0.536256 4_1:+59606155 None:intergenic
GCTTTAAGCAAGCAGCTGCT+CGG 0.536479 4_1:+59601547 None:intergenic
GAACCACTAGAAGACCCTCC+CGG 0.537525 4_1:+59607850 None:intergenic
TGGAGGGAGGGAGGGAGGGA+GGG 0.538747 4_1:+59600498 None:intergenic
TGTTCTTGAACCACAGAACA+AGG 0.543726 4_1:-59600576 Msa0560330:CDS
CGGCATTTAAAGAAAAGCAA+TGG 0.544874 4_1:-59601638 Msa0560330:CDS
GCGTCTTCTACGGCGAGTCT+CGG 0.545847 4_1:+59609405 None:intergenic
TCGTGCGTTCTCTTCCACAC+AGG 0.546465 4_1:+59608116 None:intergenic
GAAGAAATTTGTCACCTCCA+TGG 0.547752 4_1:+59603567 None:intergenic
GCAGCTGCTTGCTTAAAGCT+AGG 0.551036 4_1:-59601543 Msa0560330:CDS
GGCGGAGAAGACTGCGATGG+TGG 0.555538 4_1:-59608090 Msa0560330:CDS
TGCCATCGTGTGTCCCGGGA+GGG 0.557956 4_1:-59607864 Msa0560330:CDS
TGCTCATGAAGCCTTAGACT+GGG 0.560156 4_1:+59606217 None:intergenic
AACCACTAGAAGACCCTCCC+GGG 0.562270 4_1:+59607851 None:intergenic
AGCGGAAGAAGACTGCAGTA+AGG 0.563929 4_1:-59601423 Msa0560330:CDS
CACGGGGCTATATCTACCAT+TGG 0.564058 4_1:-59606943 Msa0560330:CDS
TGACTACACCTTCAGAATGA+AGG 0.566101 4_1:-59600412 Msa0560330:three_prime_UTR
AGAAGTTGCTTGGCGGCAGG+AGG 0.569345 4_1:+59609307 None:intergenic
GCACAAAGCTTAGACACCAT+TGG 0.570432 4_1:-59606907 Msa0560330:intron
TCAGCAGTAGCAGTTGCTGC+GGG 0.571901 4_1:-59607829 Msa0560330:CDS
CCCAAACTCTGGTTAATCGT+CGG 0.572628 4_1:-59609460 Msa0560330:CDS
TTTACTTCAATTGAATTCAG+TGG 0.572963 4_1:-59606567 Msa0560330:CDS
TTCAGCAGTAGCAGTTGCTG+CGG 0.578639 4_1:-59607830 Msa0560330:CDS
CTTATGCAGCTTTCAGCTAG+CGG 0.578821 4_1:-59601441 Msa0560330:intron
ATCGTCGGAATTGGACTCGC+CGG 0.579234 4_1:-59609445 Msa0560330:CDS
GGGACACACGATGGCATCTG+AGG 0.580420 4_1:+59607871 None:intergenic
CCAACACGATGTAGGACAGA+TGG 0.581742 4_1:+59606596 None:intergenic
GTCGGAATTGGACTCGCCGG+CGG 0.582012 4_1:-59609442 Msa0560330:CDS
TGAAAGCATAACCGAAGAGA+GGG 0.585109 4_1:+59606156 None:intergenic
TGATTTAAAGAAAATATGAT+GGG 0.588886 4_1:+59600216 None:intergenic
AAGCATGTCCAACACGATGT+AGG 0.590951 4_1:+59606588 None:intergenic
ACGCTTCCAATCCCAAACTC+TGG 0.591346 4_1:-59609471 Msa0560330:CDS
GGTAGATATAGCCCCGTGGG+AGG 0.593981 4_1:+59606948 None:intergenic
CAAGTGAAAATCAATAGCTG+TGG 0.595023 4_1:-59600477 Msa0560330:three_prime_UTR
TGCATTTGGAAGAACTCCAA+TGG 0.595067 4_1:+59606927 None:intergenic
AAACCTCTGTTGATGAGTTG+CGG 0.599771 4_1:-59600366 Msa0560330:three_prime_UTR
ATGTAGGACAGATGGATCGC+GGG 0.601892 4_1:+59606604 None:intergenic
AGATTAGCATCCTTGTTCTG+TGG 0.602127 4_1:+59600566 None:intergenic
TGACGTGAAGGGCTATGTGA+CGG 0.604250 4_1:-59608150 Msa0560330:CDS
TTTGTAGGTACTGATACTAC+AGG 0.606632 4_1:-59607018 Msa0560330:intron
ATGCCATCGTGTGTCCCGGG+AGG 0.611741 4_1:-59607865 Msa0560330:CDS
CCATCTGTCCTACATCGTGT+TGG 0.612343 4_1:-59606596 Msa0560330:CDS
CAGCTTCAGTGATTGCGACA+TGG 0.613605 4_1:+59609504 None:intergenic
GGAGAGAACGACGATCCCGC+CGG 0.617744 4_1:+59609426 None:intergenic
AGAAGAAAGAAGTTGCTTGG+CGG 0.619812 4_1:+59609300 None:intergenic
ACGTGAAGGGCTATGTGACG+GGG 0.625068 4_1:-59608148 Msa0560330:CDS
GACCCTCCCGGGACACACGA+TGG 0.626294 4_1:+59607862 None:intergenic
AATCAGGTTTAGGAGTATTG+CGG 0.626315 4_1:+59609380 None:intergenic
TTGATTGTCCAACAGGATGG+TGG 0.629395 4_1:-59603883 Msa0560330:intron
GTCCCGGGAGGGTCTTCTAG+TGG 0.632372 4_1:-59607853 Msa0560330:CDS
AATGGTAGATATAGCCCCGT+GGG 0.635696 4_1:+59606945 None:intergenic
GTAGATATAGCCCCGTGGGA+GGG 0.636940 4_1:+59606949 None:intergenic
AATTTCCATGCAGAATGTGA+AGG 0.637176 4_1:-59600999 Msa0560330:intron
CTGCTAGAGAATCACTACTT+CGG 0.637341 4_1:-59600958 Msa0560330:CDS
AGTGGACTGTCTGCTACAGA+GGG 0.640471 4_1:+59603847 None:intergenic
ATCACTACTTCGGTATAAGG+AGG 0.642249 4_1:-59600948 Msa0560330:CDS
AAACATGTTTGGGCACAACA+CGG 0.647262 4_1:+59604588 None:intergenic
GGAGGCGGAGAAGACTGCGA+TGG 0.655149 4_1:-59608093 Msa0560330:CDS
GGGTTAAATCAGTCAAACGC+AGG 0.661250 4_1:-59604616 Msa0560330:CDS
GACCGCTCTGCTCTTCAATG+GGG 0.669457 4_1:-59608066 Msa0560330:CDS
GTGGAAGAGAACGCACGAGG+AGG 0.677450 4_1:-59608111 Msa0560330:CDS
AGGCAGTCACTCACTATACG+GGG 0.684444 4_1:-59601611 Msa0560330:CDS
GTGAAGGCATATCTGAGACG+TGG 0.687956 4_1:-59600983 Msa0560330:CDS
GATGTAGGACAGATGGATCG+CGG 0.698946 4_1:+59606603 None:intergenic
CAATGGTAGATATAGCCCCG+TGG 0.701690 4_1:+59606944 None:intergenic
TGTGTGGAAGAGAACGCACG+AGG 0.709260 4_1:-59608114 Msa0560330:CDS
CGGGGTTTGGAAATCCTGTG+TGG 0.712644 4_1:-59608130 Msa0560330:CDS
GGCAGTCACTCACTATACGG+GGG 0.716872 4_1:-59601610 Msa0560330:CDS
ATGCGCTTTAAAATGTACAG+AGG 0.717082 4_1:+59600241 None:intergenic
TCATTCATCTCAAACCATGG+AGG 0.721307 4_1:-59603581 Msa0560330:CDS
ATGCCGCAACTCATCAACAG+AGG 0.733140 4_1:+59600363 None:intergenic
AGCCCCATTGAAGAGCAGAG+CGG 0.748277 4_1:+59608064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATGTTTTATATTTCT+TGG - chr4_1:59601117-59601136 Msa0560330:intron 10.0%
!!! ATTTATGTTTTATATTTCTT+GGG - chr4_1:59601118-59601137 Msa0560330:intron 10.0%
!!! TTATTACATTCTTAATATTT+TGG - chr4_1:59602071-59602090 Msa0560330:intron 10.0%
!!! TGAAATATTTTTTGAAAATT+AGG + chr4_1:59604816-59604835 None:intergenic 10.0%
!!! ATTTTTATTTAAAATATTCC+AGG + chr4_1:59604940-59604959 None:intergenic 10.0%
!!! TTAAATATTAGGTTATTTTT+AGG - chr4_1:59606973-59606992 Msa0560330:CDS 10.0%
!! TATTAGAATAGAAAATAAAT+TGG + chr4_1:59608436-59608455 None:intergenic 10.0%
!! GTAAATTTACATAAAATTTA+AGG + chr4_1:59608872-59608891 None:intergenic 10.0%
!!! GAAATATTAATATATGATTT+TGG - chr4_1:59609331-59609350 Msa0560330:CDS 10.0%
! GGGGGGGGGGGGGGGGGGGG+TGG + chr4_1:59606727-59606746 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606727-59606746 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606727-59606746 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606727-59606746 None:intergenic 100.0%
!!! TTTTTATACTTTTTCTTTGA+TGG - chr4_1:59600594-59600613 Msa0560330:CDS 15.0%
!!! TTTTATACTTTTTCTTTGAT+GGG - chr4_1:59600595-59600614 Msa0560330:CDS 15.0%
!!! TTTTTATACATTTCTTTTGA+TGG - chr4_1:59600676-59600695 Msa0560330:intron 15.0%
!!! TTTTATACATTTCTTTTGAT+GGG - chr4_1:59600677-59600696 Msa0560330:intron 15.0%
!!! TTTTTTTGTTTTATGTTTCT+TGG - chr4_1:59600935-59600954 Msa0560330:intron 15.0%
!!! TTTTTTGTTTTATGTTTCTT+GGG - chr4_1:59600936-59600955 Msa0560330:intron 15.0%
!!! TTTATGTTTTATATTTCTTG+GGG - chr4_1:59601119-59601138 Msa0560330:intron 15.0%
!!! AAAAACTAACACTTTTTTTA+TGG + chr4_1:59601191-59601210 None:intergenic 15.0%
!!! ATAAAAAAAGTGTTAGTTTT+TGG - chr4_1:59601190-59601209 Msa0560330:intron 15.0%
!!! AACTCAACAAATTTTAAAAA+TGG + chr4_1:59601253-59601272 None:intergenic 15.0%
!!! TTTAGTACTTATATTCATTT+TGG - chr4_1:59602164-59602183 Msa0560330:intron 15.0%
!!! CTTTTTTAATTCATGATTAA+TGG - chr4_1:59602646-59602665 Msa0560330:intron 15.0%
!!! TTCTTTAGTTTATAAATTGT+TGG - chr4_1:59604274-59604293 Msa0560330:intron 15.0%
!! AACTTATAACAACATAATAA+GGG + chr4_1:59605421-59605440 None:intergenic 15.0%
!! TAACTTATAACAACATAATA+AGG + chr4_1:59605422-59605441 None:intergenic 15.0%
!!! ATATTTTCTTTGATAACTTT+TGG - chr4_1:59605492-59605511 Msa0560330:intron 15.0%
!!! TTATTGCTCTAAAATTTTTA+TGG - chr4_1:59606101-59606120 Msa0560330:intron 15.0%
!! TGAATTTGAACTTAAATATT+AGG - chr4_1:59606962-59606981 Msa0560330:CDS 15.0%
!! CTAATATAGTAAAAAAATCT+TGG - chr4_1:59607036-59607055 Msa0560330:intron 15.0%
!!! AAAAGATTTTTTTTTTTTGC+AGG - chr4_1:59608113-59608132 Msa0560330:CDS 15.0%
!!! AAAGATTTTTTTTTTTTGCA+GGG - chr4_1:59608114-59608133 Msa0560330:CDS 15.0%
!! TATAGAAAGTTATACAAATT+CGG + chr4_1:59608701-59608720 None:intergenic 15.0%
!! TGATTTAAAGAAAATATGAT+GGG + chr4_1:59609567-59609586 None:intergenic 15.0%
!! ATGATTTAAAGAAAATATGA+TGG + chr4_1:59609568-59609587 None:intergenic 15.0%
!! TTGGAAGAAAAATAAAGAAT+GGG + chr4_1:59600226-59600245 None:intergenic 20.0%
!! ATTGGAAGAAAAATAAAGAA+TGG + chr4_1:59600227-59600246 None:intergenic 20.0%
!!! TTTATACTTTTTCTTTGATG+GGG - chr4_1:59600596-59600615 Msa0560330:intron 20.0%
!! ATTATTTGAGTAGAAAAGAT+TGG - chr4_1:59600652-59600671 Msa0560330:intron 20.0%
!! TTATTTGAGTAGAAAAGATT+GGG - chr4_1:59600653-59600672 Msa0560330:intron 20.0%
!!! TTTATACATTTCTTTTGATG+GGG - chr4_1:59600678-59600697 Msa0560330:intron 20.0%
!!! TGATATTATGTTTTAAGCTT+TGG - chr4_1:59600718-59600737 Msa0560330:intron 20.0%
!! ATTATTTGAGTAGAAAAGAT+TGG - chr4_1:59600652-59600671 Msa0560330:intron 20.0%
!!! TTTTATCACTTTTTCTTTGA+TGG - chr4_1:59600769-59600788 Msa0560330:intron 20.0%
!!! TTTATCACTTTTTCTTTGAT+GGG - chr4_1:59600770-59600789 Msa0560330:intron 20.0%
!!! AAAAACTAACACATCTTTTA+TGG + chr4_1:59600842-59600861 None:intergenic 20.0%
!!! TGGTTAGTTTTTAGTTTTAT+TGG - chr4_1:59600900-59600919 Msa0560330:intron 20.0%
!!! GGTTAGTTTTTAGTTTTATT+GGG - chr4_1:59600901-59600920 Msa0560330:intron 20.0%
!!! TTTTTGTTTTATGTTTCTTG+GGG - chr4_1:59600937-59600956 Msa0560330:intron 20.0%
!!! TGTTAATGTTTTTCAAGTAT+TGG - chr4_1:59601226-59601245 Msa0560330:intron 20.0%
!!! TGTTTTTGTTTTTTGTTTCT+TGG - chr4_1:59601296-59601315 Msa0560330:intron 20.0%
!!! GTTTTTGTTTTTTGTTTCTT+GGG - chr4_1:59601297-59601316 Msa0560330:intron 20.0%
!! AAAAACTAAAACTTCCTTTA+TGG + chr4_1:59601383-59601402 None:intergenic 20.0%
!!! ATAAAGGAAGTTTTAGTTTT+TGG - chr4_1:59601382-59601401 Msa0560330:intron 20.0%
!! AAAAAACTAACTCTTTGATT+CGG + chr4_1:59601466-59601485 None:intergenic 20.0%
!!! TATTTTTATGTTGTGTTTGT+TGG - chr4_1:59601492-59601511 Msa0560330:intron 20.0%
!!! ATTTTTATGTTGTGTTTGTT+GGG - chr4_1:59601493-59601512 Msa0560330:intron 20.0%
!! TAGAGGTAGAAATTATTTAT+AGG + chr4_1:59602013-59602032 None:intergenic 20.0%
!!! CTTAATATTTTGGTCATTTA+TGG - chr4_1:59602081-59602100 Msa0560330:intron 20.0%
!! TTGTTATCCATACAATATAA+GGG - chr4_1:59602531-59602550 Msa0560330:intron 20.0%
!! TCATGAATTAAAAAAGAAAC+AGG + chr4_1:59602642-59602661 None:intergenic 20.0%
!!! TTTTTGCTATGATTATGATT+TGG - chr4_1:59602918-59602937 Msa0560330:intron 20.0%
!!! TGTGTAATTATTAAGTGTTT+TGG - chr4_1:59603473-59603492 Msa0560330:CDS 20.0%
!! TCATAATAGAAAAAATGACA+AGG - chr4_1:59603688-59603707 Msa0560330:intron 20.0%
!! TTCTCAAAAAAGAAGAAAAA+GGG - chr4_1:59603760-59603779 Msa0560330:CDS 20.0%
!! TAAACTAAAGAAAAAATCGA+AGG + chr4_1:59604266-59604285 None:intergenic 20.0%
!! GAATAAAGAAAAGAAAGTTT+AGG + chr4_1:59604866-59604885 None:intergenic 20.0%
!!! AATTGAAAAATTTTTAGGAC+AGG - chr4_1:59604957-59604976 Msa0560330:intron 20.0%
!! TTAAATCCAATTATGAAGAA+TGG - chr4_1:59605143-59605162 Msa0560330:intron 20.0%
!! TAAATCCAATTATGAAGAAT+GGG - chr4_1:59605144-59605163 Msa0560330:intron 20.0%
!! ATTATCGTATGTAGTATTAA+TGG + chr4_1:59605224-59605243 None:intergenic 20.0%
!!! TTCTTGTACAATTTCTTTTA+TGG - chr4_1:59605388-59605407 Msa0560330:intron 20.0%
!!! TAGAATTGCCTAAATTATTT+TGG + chr4_1:59605620-59605639 None:intergenic 20.0%
!! AAAAATAAAACTCTCCTATT+TGG - chr4_1:59606586-59606605 Msa0560330:CDS 20.0%
!!! CAACTTTGCTATTAAAATAA+GGG + chr4_1:59607169-59607188 None:intergenic 20.0%
!!! TCAACTTTGCTATTAAAATA+AGG + chr4_1:59607170-59607189 None:intergenic 20.0%
!!! AAAGTAGCATCAATTTTATT+AGG + chr4_1:59607666-59607685 None:intergenic 20.0%
!! ATTTGAATGAACAATTAATC+AGG + chr4_1:59607982-59608001 None:intergenic 20.0%
!! GTGATTTATATGCTATAAAT+CGG - chr4_1:59608064-59608083 Msa0560330:CDS 20.0%
!! TGATTTATATGCTATAAATC+GGG - chr4_1:59608065-59608084 Msa0560330:CDS 20.0%
!!! AAAGATTCCTTTATTTTGTT+GGG - chr4_1:59608653-59608672 Msa0560330:intron 20.0%
!! GATTCTTTAAATTATGATAC+CGG - chr4_1:59608675-59608694 Msa0560330:intron 20.0%
!!! AGAAAACATTTTTCTAGAAT+TGG - chr4_1:59609615-59609634 Msa0560330:five_prime_UTR 20.0%
!!! GAAAAATAAAGAATGGGTTT+TGG + chr4_1:59600220-59600239 None:intergenic 25.0%
!!! AGAATATGTGTTTTAAGCTT+TGG - chr4_1:59600625-59600644 Msa0560330:intron 25.0%
!!! TTATCACTTTTTCTTTGATG+GGG - chr4_1:59600771-59600790 Msa0560330:intron 25.0%
!!! TGTTAGTGTTTTTTAAGCAT+TGG - chr4_1:59600880-59600899 Msa0560330:intron 25.0%
!!! TTGTTATGTTTTTTGAGCAT+TGG - chr4_1:59601423-59601442 Msa0560330:CDS 25.0%
!!! TTTTTATGTTGTGTTTGTTG+GGG - chr4_1:59601494-59601513 Msa0560330:intron 25.0%
! TCACATACTAAACTTTGATT+CGG + chr4_1:59601560-59601579 None:intergenic 25.0%
!! TAGTATGTGACATTTTTATC+TGG - chr4_1:59601570-59601589 Msa0560330:CDS 25.0%
!! AGTATGTGACATTTTTATCT+GGG - chr4_1:59601571-59601590 Msa0560330:CDS 25.0%
!! TTATGGATGAATTCTCTTTT+GGG - chr4_1:59601758-59601777 Msa0560330:intron 25.0%
!! CATTATTATCTCAGATTTTC+TGG - chr4_1:59601855-59601874 Msa0560330:intron 25.0%
! TGCTTGAAATGCAAATTATA+AGG - chr4_1:59602035-59602054 Msa0560330:intron 25.0%
! ATGCAAATTATAAGGTTTAC+TGG - chr4_1:59602043-59602062 Msa0560330:intron 25.0%
!! TATTGAAACCTCTCATATTT+TGG - chr4_1:59602126-59602145 Msa0560330:intron 25.0%
! GTGCTAATATTTCAAATGTT+TGG - chr4_1:59602406-59602425 Msa0560330:intron 25.0%
! GTTGTTATCCATACAATATA+AGG - chr4_1:59602530-59602549 Msa0560330:intron 25.0%
! AAAGATTATTGTGTCTTTGT+AGG - chr4_1:59602747-59602766 Msa0560330:intron 25.0%
! ATAAGAAATTACACATAGTG+AGG - chr4_1:59603058-59603077 Msa0560330:intron 25.0%
! TTTACTTCAATTGAATTCAG+TGG - chr4_1:59603213-59603232 Msa0560330:intron 25.0%
! CAAAAGACAATATATGTCAT+TGG - chr4_1:59603301-59603320 Msa0560330:intron 25.0%
!!! TGAAAACCAATTTTTTTTCC+TGG - chr4_1:59603367-59603386 Msa0560330:intron 25.0%
! AAATCTCCAGGAAAAAAAAT+TGG + chr4_1:59603376-59603395 None:intergenic 25.0%
!!! CTCTAAAATTACCAAACAAA+AGG - chr4_1:59603445-59603464 Msa0560330:intron 25.0%
!! TACACAAAATTCCTTTTGTT+TGG + chr4_1:59603459-59603478 None:intergenic 25.0%
!!! ATTAAGTGTTTTGGTCATTT+TGG - chr4_1:59603482-59603501 Msa0560330:CDS 25.0%
! TTGTGAGTATATTGCTAAAA+AGG - chr4_1:59603538-59603557 Msa0560330:CDS 25.0%
!! TATAGATGTTCCATTTTGTT+GGG + chr4_1:59603597-59603616 None:intergenic 25.0%
!! ATATAGATGTTCCATTTTGT+TGG + chr4_1:59603598-59603617 None:intergenic 25.0%
! ACGAGTAAAGAATTAAGTAT+TGG - chr4_1:59603733-59603752 Msa0560330:intron 25.0%
! GTTCTCAAAAAAGAAGAAAA+AGG - chr4_1:59603759-59603778 Msa0560330:CDS 25.0%
! TCTCAAAAAAGAAGAAAAAG+GGG - chr4_1:59603761-59603780 Msa0560330:CDS 25.0%
!! TTCATTTTGCCTCTTTAAAT+GGG + chr4_1:59603839-59603858 None:intergenic 25.0%
!! ATTCATTTTGCCTCTTTAAA+TGG + chr4_1:59603840-59603859 None:intergenic 25.0%
!! TTCAGCTTATAACTTTTCTT+TGG + chr4_1:59603881-59603900 None:intergenic 25.0%
! TGTTATAACATACAAGTCTT+TGG + chr4_1:59604501-59604520 None:intergenic 25.0%
!!! TCTATTCTAGGTTTGTTAAA+CGG + chr4_1:59604626-59604645 None:intergenic 25.0%
! TCTAATCAATTACTGAATGT+GGG - chr4_1:59604739-59604758 Msa0560330:intron 25.0%
! CACATATACAAAATGATACT+GGG + chr4_1:59604888-59604907 None:intergenic 25.0%
! TCACATATACAAAATGATAC+TGG + chr4_1:59604889-59604908 None:intergenic 25.0%
! TTTAACCCATTCTTCATAAT+TGG + chr4_1:59605152-59605171 None:intergenic 25.0%
!! GTACAATTTCTTTTATGGTA+AGG - chr4_1:59605393-59605412 Msa0560330:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr4_1:59605728-59605747 Msa0560330:intron 25.0%
! GTTCTATCATAAACCAAATT+TGG + chr4_1:59605768-59605787 None:intergenic 25.0%
! ATAATGCAAAACTTCTATCA+TGG + chr4_1:59605995-59606014 None:intergenic 25.0%
!!! TTCTATAATCATTTTTCTGC+AGG - chr4_1:59606362-59606381 Msa0560330:intron 25.0%
!!! ATAGGAGAGTTTTATTTTTC+TGG + chr4_1:59606585-59606604 None:intergenic 25.0%
! TATAAAAGAGGGAAATGATT+TGG + chr4_1:59606664-59606683 None:intergenic 25.0%
! TTTGCATCTCATCATTTAAA+GGG + chr4_1:59606770-59606789 None:intergenic 25.0%
! ATTTGCATCTCATCATTTAA+AGG + chr4_1:59606771-59606790 None:intergenic 25.0%
! TCCTCATTTAATAACAACTT+CGG + chr4_1:59606804-59606823 None:intergenic 25.0%
!!! CTTTGGAGTAAAAAGATTTA+AGG + chr4_1:59606842-59606861 None:intergenic 25.0%
!! TTTTTACTCCAAAGTATGAT+TGG - chr4_1:59606848-59606867 Msa0560330:intron 25.0%
!!! AGTTACATTTTGCTTGTTTT+AGG - chr4_1:59607361-59607380 Msa0560330:intron 25.0%
!! TAGGTAATAAGTTGAGAAAA+TGG + chr4_1:59607647-59607666 None:intergenic 25.0%
! GAAATAGTAGAAGAAATAGA+TGG + chr4_1:59607711-59607730 None:intergenic 25.0%
! TTCCTTGTTAATAATCTATG+TGG - chr4_1:59607747-59607766 Msa0560330:intron 25.0%
! ATCCACATAGATTATTAACA+AGG + chr4_1:59607752-59607771 None:intergenic 25.0%
!! ATACTTTTGAATTGGGTAAA+AGG + chr4_1:59607884-59607903 None:intergenic 25.0%
!! TTTTACCCAATTCAAAAGTA+TGG - chr4_1:59607883-59607902 Msa0560330:CDS 25.0%
! ATATAGTCATCTATTATCTG+TGG - chr4_1:59607927-59607946 Msa0560330:intron 25.0%
! GATCAAGAACTAAAAACTAA+AGG + chr4_1:59608040-59608059 None:intergenic 25.0%
! GATTTATATGCTATAAATCG+GGG - chr4_1:59608066-59608085 Msa0560330:CDS 25.0%
! ATAGAAAATAAATTGGTCCA+TGG + chr4_1:59608429-59608448 None:intergenic 25.0%
! CAACAAAATAAAGGAATCTT+TGG + chr4_1:59608654-59608673 None:intergenic 25.0%
!!! CAAAGATTCCTTTATTTTGT+TGG - chr4_1:59608652-59608671 Msa0560330:intron 25.0%
! AAAGAATCCCAACAAAATAA+AGG + chr4_1:59608663-59608682 None:intergenic 25.0%
!!! TACATCATTTCTGTTTTTAG+TGG - chr4_1:59608924-59608943 Msa0560330:intron 25.0%
! CATAAGAAAGAGAAAGAAAA+AGG + chr4_1:59609160-59609179 None:intergenic 25.0%
!! GGTTGAATAATATTTCTAAC+AGG + chr4_1:59609465-59609484 None:intergenic 25.0%
! GAAATATTATTCAACCCTAT+TGG - chr4_1:59609469-59609488 Msa0560330:CDS 25.0%
! ATTATTGGCAAAATCCAATA+GGG + chr4_1:59609486-59609505 None:intergenic 25.0%
! AATTATTGGCAAAATCCAAT+AGG + chr4_1:59609487-59609506 None:intergenic 25.0%
! ATATATGGGTGCAAAATTAT+TGG + chr4_1:59609501-59609520 None:intergenic 25.0%
!! ATTTTGCACCCATATATATA+AGG - chr4_1:59609504-59609523 Msa0560330:CDS 25.0%
! TAGGTCAACCTTATATATAT+GGG + chr4_1:59609515-59609534 None:intergenic 25.0%
!!! ATAAAGAATGGGTTTTGGAA+GGG + chr4_1:59600215-59600234 None:intergenic 30.0%
!!! AATAAAGAATGGGTTTTGGA+AGG + chr4_1:59600216-59600235 None:intergenic 30.0%
TCAGAGAAAATGTGTGAAAT+TGG + chr4_1:59600245-59600264 None:intergenic 30.0%
! AATACTCCTAAACCTGATTT+TGG - chr4_1:59600404-59600423 Msa0560330:three_prime_UTR 30.0%
!! TCAATAAAAGCACCAAAATC+AGG + chr4_1:59600419-59600438 None:intergenic 30.0%
!! CAATACTTAATTTGCCATGA+AGG - chr4_1:59601005-59601024 Msa0560330:intron 30.0%
AAAAACTAACACATCCTTCA+TGG + chr4_1:59601022-59601041 None:intergenic 30.0%
!! CAACATTTGATTTGCCATAA+AGG - chr4_1:59601366-59601385 Msa0560330:intron 30.0%
!! TTTTTCAGATTTGACGTGAA+GGG - chr4_1:59601619-59601638 Msa0560330:CDS 30.0%
! GTTATGGATGAATTCTCTTT+TGG - chr4_1:59601757-59601776 Msa0560330:intron 30.0%
AAGATAACTATACAGAGCTA+AGG + chr4_1:59601804-59601823 None:intergenic 30.0%
TTTGCATTTCAAGCAATTAG+AGG + chr4_1:59602030-59602049 None:intergenic 30.0%
GTAAATGACCAAAATATGAG+AGG + chr4_1:59602137-59602156 None:intergenic 30.0%
ATTCTACTAAACTACATTCC+TGG - chr4_1:59602219-59602238 Msa0560330:intron 30.0%
ATTCAATAGAACAAGCTAAC+AGG + chr4_1:59602303-59602322 None:intergenic 30.0%
!! CAAATATTTTTGAGCTGGAA+GGG + chr4_1:59602335-59602354 None:intergenic 30.0%
!! TCAAATATTTTTGAGCTGGA+AGG + chr4_1:59602336-59602355 None:intergenic 30.0%
!! CAGATCAAATATTTTTGAGC+TGG + chr4_1:59602340-59602359 None:intergenic 30.0%
CAGCTCAAAAATATTTGATC+TGG - chr4_1:59602338-59602357 Msa0560330:intron 30.0%
TGAATCGAAGTTATATCATC+TGG - chr4_1:59602378-59602397 Msa0560330:intron 30.0%
GTTAGTAATATTACACCTTG+TGG - chr4_1:59602456-59602475 Msa0560330:intron 30.0%
ATTACTGCCCTTATATTGTA+TGG + chr4_1:59602541-59602560 None:intergenic 30.0%
AAAAGAAACAGGATTATGCA+TGG + chr4_1:59602631-59602650 None:intergenic 30.0%
CAACATGGTATAATTGTAAG+TGG + chr4_1:59602672-59602691 None:intergenic 30.0%
CTTACAATTATACCATGTTG+TGG - chr4_1:59602672-59602691 Msa0560330:intron 30.0%
AATCAAACAAACAGCTATTG+AGG + chr4_1:59602698-59602717 None:intergenic 30.0%
TCATGTTCTCATACATAGTT+AGG + chr4_1:59602728-59602747 None:intergenic 30.0%
AAAACTATGCATCTTACCAA+TGG + chr4_1:59602892-59602911 None:intergenic 30.0%
TGATTACTTAATTGCATTGC+AGG - chr4_1:59603145-59603164 Msa0560330:intron 30.0%
! TATGATACACCTTGACTTTT+TGG + chr4_1:59603242-59603261 None:intergenic 30.0%
ATCAATTTCACTAAATCTCC+AGG + chr4_1:59603388-59603407 None:intergenic 30.0%
! ATAGATGTTCCATTTTGTTG+GGG + chr4_1:59603596-59603615 None:intergenic 30.0%
TATATTGAAAACCCTCTCTT+CGG - chr4_1:59603613-59603632 Msa0560330:CDS 30.0%
GAAAAAATGACAAGGTAGTA+AGG - chr4_1:59603696-59603715 Msa0560330:intron 30.0%
CTCAAAAAAGAAGAAAAAGG+GGG - chr4_1:59603762-59603781 Msa0560330:CDS 30.0%
TAAAGAGGCAAAATGAATCT+TGG - chr4_1:59603842-59603861 Msa0560330:CDS 30.0%
AGTTATAAGCTGAACACAAA+AGG - chr4_1:59603887-59603906 Msa0560330:intron 30.0%
ACACAAAAGGCAATTTATAC+TGG - chr4_1:59603900-59603919 Msa0560330:intron 30.0%
!! AGTTGCTTATTTTTCATAGC+TGG + chr4_1:59603965-59603984 None:intergenic 30.0%
TAAACGCAACACAGATTAAT+CGG + chr4_1:59604212-59604231 None:intergenic 30.0%
! AGAAAAAATCGAAGGCATAA+TGG + chr4_1:59604258-59604277 None:intergenic 30.0%
AGATTTCATGAACAACAAGT+TGG + chr4_1:59604328-59604347 None:intergenic 30.0%
CATGAAATCTACCAAAAACA+AGG - chr4_1:59604338-59604357 Msa0560330:intron 30.0%
!!! CAATTTACATGCCTTGTTTT+TGG + chr4_1:59604352-59604371 None:intergenic 30.0%
AACTCTCTTATCATTGTCAA+CGG - chr4_1:59604377-59604396 Msa0560330:intron 30.0%
!! CATATTCTAAGATTCAAGGA+TGG + chr4_1:59604429-59604448 None:intergenic 30.0%
!! AGCACATATTCTAAGATTCA+AGG + chr4_1:59604433-59604452 None:intergenic 30.0%
TGTATGTTATAACAACCACA+AGG - chr4_1:59604507-59604526 Msa0560330:CDS 30.0%
CTCTAATCAATTACTGAATG+TGG - chr4_1:59604738-59604757 Msa0560330:intron 30.0%
! ATTTAAAATATTCCAGGCAC+AGG + chr4_1:59604934-59604953 None:intergenic 30.0%
ATGGCTTCATAAACATGTTT+GGG + chr4_1:59605205-59605224 None:intergenic 30.0%
AATGGCTTCATAAACATGTT+TGG + chr4_1:59605206-59605225 None:intergenic 30.0%
! TAAAAGCCTTGTATAAAGTC+AGG - chr4_1:59605245-59605264 Msa0560330:intron 30.0%
TGCATTTCAAAGTCTGTTAA+AGG - chr4_1:59605282-59605301 Msa0560330:intron 30.0%
CAAAGAAAATATTGTCACTC+TGG + chr4_1:59605484-59605503 None:intergenic 30.0%
ACTATGAGAATCAAAGATCT+AGG + chr4_1:59605590-59605609 None:intergenic 30.0%
TGAAGTGGCCAAAATAATTT+AGG - chr4_1:59605609-59605628 Msa0560330:intron 30.0%
ATTCTACTCTTATGTATCCA+TGG - chr4_1:59605634-59605653 Msa0560330:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + chr4_1:59605711-59605730 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr4_1:59605733-59605752 None:intergenic 30.0%
TGGTTTATGATAGAACACTA+TGG - chr4_1:59605772-59605791 Msa0560330:intron 30.0%
ATCAAAACAAGGAGATAGTA+GGG + chr4_1:59605882-59605901 None:intergenic 30.0%
AATCAAAACAAGGAGATAGT+AGG + chr4_1:59605883-59605902 None:intergenic 30.0%
! TTCTTTGCATTAAGCTTTAG+TGG + chr4_1:59605954-59605973 None:intergenic 30.0%
CTAAAGCTTAATGCAAAGAA+AGG - chr4_1:59605954-59605973 Msa0560330:intron 30.0%
!!! TTTTTTGACTCTAGAGCTAA+AGG + chr4_1:59606062-59606081 None:intergenic 30.0%
ATTGCTCTTACATTATTTCC+AGG - chr4_1:59606132-59606151 Msa0560330:intron 30.0%
CAATCATCATGATATCCTAA+AGG + chr4_1:59606166-59606185 None:intergenic 30.0%
ATTTCTTCTAGACACTATCT+TGG - chr4_1:59606228-59606247 Msa0560330:CDS 30.0%
!! ATTGATGTTTGGTAATGGAA+TGG + chr4_1:59606299-59606318 None:intergenic 30.0%
ATTCCATTACCAAACATCAA+TGG - chr4_1:59606298-59606317 Msa0560330:intron 30.0%
TTTCCATTGATGTTTGGTAA+TGG + chr4_1:59606304-59606323 None:intergenic 30.0%
! CTTTAAAAGTTCAGAAGGTT+CGG + chr4_1:59606329-59606348 None:intergenic 30.0%
! TTCTCCTTTAAAAGTTCAGA+AGG + chr4_1:59606334-59606353 None:intergenic 30.0%
!! TTCTGAACTTTTAAAGGAGA+AGG - chr4_1:59606333-59606352 Msa0560330:intron 30.0%
AATAAAACTCTCCTATTTGG+TGG - chr4_1:59606589-59606608 Msa0560330:CDS 30.0%
!! GTTGAGAGTGTTATAAAAGA+GGG + chr4_1:59606675-59606694 None:intergenic 30.0%
!! TGTTGAGAGTGTTATAAAAG+AGG + chr4_1:59606676-59606695 None:intergenic 30.0%
TTGCATCTCATCATTTAAAG+GGG + chr4_1:59606769-59606788 None:intergenic 30.0%
! TCCGAAGTTGTTATTAAATG+AGG - chr4_1:59606800-59606819 Msa0560330:intron 30.0%
! GTTGTTATTAAATGAGGACT+TGG - chr4_1:59606806-59606825 Msa0560330:intron 30.0%
! TGCATTTTCCAATCATACTT+TGG + chr4_1:59606859-59606878 None:intergenic 30.0%
!!! CGCTTACAGTTTTTTGTAAA+AGG + chr4_1:59606887-59606906 None:intergenic 30.0%
AAATTACCTCTCTGAACTTT+GGG + chr4_1:59607464-59607483 None:intergenic 30.0%
AAAATTACCTCTCTGAACTT+TGG + chr4_1:59607465-59607484 None:intergenic 30.0%
ATAAGCTATCCATACAGAAT+CGG + chr4_1:59607554-59607573 None:intergenic 30.0%
AAGAAATAGATGGAACACAA+TGG + chr4_1:59607701-59607720 None:intergenic 30.0%
AGACTGACATTTATGTTAAG+GGG + chr4_1:59607855-59607874 None:intergenic 30.0%
GAGACTGACATTTATGTTAA+GGG + chr4_1:59607856-59607875 None:intergenic 30.0%
AGAGACTGACATTTATGTTA+AGG + chr4_1:59607857-59607876 None:intergenic 30.0%
! ATCAGCCATACTTTTGAATT+GGG + chr4_1:59607891-59607910 None:intergenic 30.0%
! TCATTCAAATTTTATCCACG+AGG - chr4_1:59607992-59608011 Msa0560330:intron 30.0%
ACTAAAAACTAAAGGATGTC+CGG + chr4_1:59608032-59608051 None:intergenic 30.0%
!!! TTTTTTTTTGCAGGGAAACA+CGG - chr4_1:59608122-59608141 Msa0560330:CDS 30.0%
GGCATTTAAAGAAAAGCAAT+GGG - chr4_1:59608143-59608162 Msa0560330:CDS 30.0%
TAAAGAAAAGCAATGGGATA+AGG - chr4_1:59608149-59608168 Msa0560330:CDS 30.0%
TAGAACAGTTGGTTATTAGA+GGG + chr4_1:59608485-59608504 None:intergenic 30.0%
CATCAAACTGATCATTATCA+AGG + chr4_1:59608621-59608640 None:intergenic 30.0%
TGGAAATTACACACTATTCT+CGG + chr4_1:59608740-59608759 None:intergenic 30.0%
!!! AAATATCTTTTTTCCGTTCC+TGG - chr4_1:59608898-59608917 Msa0560330:intron 30.0%
AAATGATGTATTTCCAGGAA+CGG + chr4_1:59608914-59608933 None:intergenic 30.0%
AACAGAAATGATGTATTTCC+AGG + chr4_1:59608919-59608938 None:intergenic 30.0%
!! ATATATCATTTCTGAGACAC+TGG - chr4_1:59609009-59609028 Msa0560330:intron 30.0%
AGAAAGAAAAAGGACCATTA+AGG + chr4_1:59609150-59609169 None:intergenic 30.0%
TCAAAATACCTTCATTCTGA+AGG + chr4_1:59609379-59609398 None:intergenic 30.0%
!!! CAGAATGAAGGTATTTTGAA+AGG - chr4_1:59609380-59609399 Msa0560330:CDS 30.0%
CTAGGTCAACCTTATATATA+TGG + chr4_1:59609516-59609535 None:intergenic 30.0%
!! AATCAGGTTTAGGAGTATTG+CGG + chr4_1:59600403-59600422 None:intergenic 35.0%
! AAAGCACCAAAATCAGGTTT+AGG + chr4_1:59600413-59600432 None:intergenic 35.0%
!!! ATACTTTTTCTTTGATGGGG+TGG - chr4_1:59600599-59600618 Msa0560330:intron 35.0%
!! GTTTTTCAGATTTGACGTGA+AGG - chr4_1:59601618-59601637 Msa0560330:CDS 35.0%
TCTGGTGAGAACAAGTATTA+TGG - chr4_1:59601873-59601892 Msa0560330:intron 35.0%
AATATTACACCTTGTGGTAG+AGG - chr4_1:59602462-59602481 Msa0560330:intron 35.0%
ATATTACACCTTGTGGTAGA+GGG - chr4_1:59602463-59602482 Msa0560330:intron 35.0%
AGTAATAGTTTCATGATCCC+AGG - chr4_1:59602555-59602574 Msa0560330:intron 35.0%
ACAATAACAGACTAAGACCT+GGG + chr4_1:59602575-59602594 None:intergenic 35.0%
!! TTTGTAGGTACTGATACTAC+AGG - chr4_1:59602762-59602781 Msa0560330:intron 35.0%
AAAATACCACAAAGTGATGC+TGG + chr4_1:59602801-59602820 None:intergenic 35.0%
! GCATCACTTTGTGGTATTTT+TGG - chr4_1:59602801-59602820 Msa0560330:intron 35.0%
CATTCTTAAAGCAGATCACA+AGG + chr4_1:59602983-59603002 None:intergenic 35.0%
ATTACACATAGTGAGGTGAA+CGG - chr4_1:59603065-59603084 Msa0560330:intron 35.0%
TACTTAATTGCATTGCAGGA+TGG - chr4_1:59603149-59603168 Msa0560330:intron 35.0%
! TGTCTTTTGTGTAGCATCTT+TGG + chr4_1:59603290-59603309 None:intergenic 35.0%
AAAGCTATCGAGAATATGTC+TGG - chr4_1:59603325-59603344 Msa0560330:intron 35.0%
TATGTCTGGATGTAAGTTTC+TGG - chr4_1:59603339-59603358 Msa0560330:intron 35.0%
ATGTCTGGATGTAAGTTTCT+GGG - chr4_1:59603340-59603359 Msa0560330:intron 35.0%
!!! TCATTTTGGTTTTGCAGATC+AGG - chr4_1:59603496-59603515 Msa0560330:CDS 35.0%
TCACAAAGATCCATATGCTT+TGG + chr4_1:59603524-59603543 None:intergenic 35.0%
CGGTTATGCTTTCAATACAA+AGG - chr4_1:59603633-59603652 Msa0560330:intron 35.0%
AAGGTAGTAAGGATGAAAGA+GGG - chr4_1:59603707-59603726 Msa0560330:intron 35.0%
AAGGTTTGACCCATTTAAAG+AGG - chr4_1:59603827-59603846 Msa0560330:CDS 35.0%
GCTTCAGTTATCCAGTATAA+TGG + chr4_1:59604031-59604050 None:intergenic 35.0%
AAGTAATTGTTCAGTTGCTG+TGG - chr4_1:59604089-59604108 Msa0560330:intron 35.0%
CATAATGGCATATGATAGGT+CGG + chr4_1:59604243-59604262 None:intergenic 35.0%
AAGGCATAATGGCATATGAT+AGG + chr4_1:59604247-59604266 None:intergenic 35.0%
!!! CTATTTTTGCAGTCAGAGTT+AGG + chr4_1:59604459-59604478 None:intergenic 35.0%
TGACTGCAAAAATAGCTCAT+GGG - chr4_1:59604464-59604483 Msa0560330:intron 35.0%
TAGGGATAAAATAGACCTTG+TGG + chr4_1:59604525-59604544 None:intergenic 35.0%
!! CACATTCTAAGATGGTATCA+GGG + chr4_1:59604649-59604668 None:intergenic 35.0%
CAGCCTAAAAGTTAGCTAAA+GGG - chr4_1:59604672-59604691 Msa0560330:intron 35.0%
! CAACCCTTTAGCTAACTTTT+AGG + chr4_1:59604678-59604697 None:intergenic 35.0%
AAAAGTTAGCTAAAGGGTTG+AGG - chr4_1:59604678-59604697 Msa0560330:intron 35.0%
! AATCACTACTTTGTTTCCAG+TGG - chr4_1:59604840-59604859 Msa0560330:intron 35.0%
ATGTGAATCCCATATATCAC+TGG - chr4_1:59604903-59604922 Msa0560330:intron 35.0%
TGTGAATCCCATATATCACT+GGG - chr4_1:59604904-59604923 Msa0560330:intron 35.0%
AACTGAAAAATAGACAAGCC+TGG - chr4_1:59605455-59605474 Msa0560330:intron 35.0%
! AACTTTTGGATCGTCTTGAT+AGG - chr4_1:59605506-59605525 Msa0560330:intron 35.0%
! ACTTTTGGATCGTCTTGATA+GGG - chr4_1:59605507-59605526 Msa0560330:intron 35.0%
CTTTGATTCTCATAGTGAAG+TGG - chr4_1:59605594-59605613 Msa0560330:intron 35.0%
TTGATCTACTCTTCTTACCA+TGG + chr4_1:59605654-59605673 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+CGG - chr4_1:59605655-59605674 Msa0560330:intron 35.0%
AGTCAAGTTAAAAGAGGTAG+AGG - chr4_1:59605681-59605700 Msa0560330:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr4_1:59605740-59605759 Msa0560330:intron 35.0%
! CAATGAGTTGGATCCAAATT+TGG - chr4_1:59605752-59605771 Msa0560330:intron 35.0%
GTTTCATTCATCTCAAACCA+TGG - chr4_1:59606196-59606215 Msa0560330:CDS 35.0%
TCGGTATTTCCATTGATGTT+TGG + chr4_1:59606310-59606329 None:intergenic 35.0%
! CGAACCTTCTGAACTTTTAA+AGG - chr4_1:59606327-59606346 Msa0560330:intron 35.0%
!!! TTAGGCTTTGTTTTGGAGTT+AGG - chr4_1:59606463-59606482 Msa0560330:CDS 35.0%
!! CGTTTTGAATTCCACCAAAT+AGG + chr4_1:59606603-59606622 None:intergenic 35.0%
AATTCAAAACGTATTGCGAG+AGG - chr4_1:59606612-59606631 Msa0560330:CDS 35.0%
ATTCAAAACGTATTGCGAGA+GGG - chr4_1:59606613-59606632 Msa0560330:CDS 35.0%
! AAGCTATCGAGCTTTTACTA+AGG + chr4_1:59606912-59606931 None:intergenic 35.0%
CAAACTGATGATCTGTTCAT+GGG - chr4_1:59607197-59607216 Msa0560330:intron 35.0%
AAATCAGGAAAATGTGTGGT+GGG + chr4_1:59607517-59607536 None:intergenic 35.0%
TGAGAAATCAGGAAAATGTG+TGG + chr4_1:59607521-59607540 None:intergenic 35.0%
CTGTATGGATAGCTTATTGT+TGG - chr4_1:59607557-59607576 Msa0560330:intron 35.0%
GAATTCAAGGAAAAGTCACA+AGG + chr4_1:59607589-59607608 None:intergenic 35.0%
AATCCAAGTGTACTTTGAGT+GGG + chr4_1:59607829-59607848 None:intergenic 35.0%
AAATCCAAGTGTACTTTGAG+TGG + chr4_1:59607830-59607849 None:intergenic 35.0%
! CATCAGCCATACTTTTGAAT+TGG + chr4_1:59607892-59607911 None:intergenic 35.0%
TATATGCTATAAATCGGGGT+TGG - chr4_1:59608070-59608089 Msa0560330:CDS 35.0%
CGGCATTTAAAGAAAAGCAA+TGG - chr4_1:59608142-59608161 Msa0560330:CDS 35.0%
AGGAAAATGGTTTAAGTGTG+AGG + chr4_1:59608295-59608314 None:intergenic 35.0%
CATAAGTTAACAGGTGAGAA+CGG + chr4_1:59608325-59608344 None:intergenic 35.0%
TGAAAGCTGCATAAGTTAAC+AGG + chr4_1:59608334-59608353 None:intergenic 35.0%
GGCAATATTGCTTGATAAGA+AGG - chr4_1:59608378-59608397 Msa0560330:intron 35.0%
TTGATAAGAAGGTGAGAAGA+TGG - chr4_1:59608389-59608408 Msa0560330:intron 35.0%
TGATAAGAAGGTGAGAAGAT+GGG - chr4_1:59608390-59608409 Msa0560330:intron 35.0%
GTAGAACAGTTGGTTATTAG+AGG + chr4_1:59608486-59608505 None:intergenic 35.0%
ATAACCAACTGTTCTACGAA+TGG - chr4_1:59608489-59608508 Msa0560330:intron 35.0%
TAACCAACTGTTCTACGAAT+GGG - chr4_1:59608490-59608509 Msa0560330:intron 35.0%
TTGTAACATCTCAGAACATG+AGG + chr4_1:59608521-59608540 None:intergenic 35.0%
ATCAGCTGCTATCAGTTAAA+GGG + chr4_1:59608585-59608604 None:intergenic 35.0%
AATCAGCTGCTATCAGTTAA+AGG + chr4_1:59608586-59608605 None:intergenic 35.0%
GAAAGTTATACAAATTCGGC+CGG + chr4_1:59608697-59608716 None:intergenic 35.0%
AATTTCCATGCAGAATGTGA+AGG - chr4_1:59608781-59608800 Msa0560330:intron 35.0%
AGAATCACTACTTCGGTATA+AGG - chr4_1:59608829-59608848 Msa0560330:intron 35.0%
CATATGAAAGACGAGTGATA+TGG + chr4_1:59609080-59609099 None:intergenic 35.0%
TAAGGATGATATGAAGTGCA+AGG + chr4_1:59609132-59609151 None:intergenic 35.0%
GCACTTCATATCATCCTTAA+TGG - chr4_1:59609133-59609152 Msa0560330:intron 35.0%
!!! GCTATTGATTTTCACTTGGA+GGG + chr4_1:59609301-59609320 None:intergenic 35.0%
!!! AGCTATTGATTTTCACTTGG+AGG + chr4_1:59609302-59609321 None:intergenic 35.0%
!!! CACAGCTATTGATTTTCACT+TGG + chr4_1:59609305-59609324 None:intergenic 35.0%
CAAGTGAAAATCAATAGCTG+TGG - chr4_1:59609303-59609322 Msa0560330:CDS 35.0%
AAAATCAATAGCTGTGGATG+TGG - chr4_1:59609309-59609328 Msa0560330:CDS 35.0%
TAAAATGTACAGAGGCTACT+AGG + chr4_1:59609534-59609553 None:intergenic 35.0%
!! ATGCGCTTTAAAATGTACAG+AGG + chr4_1:59609542-59609561 None:intergenic 35.0%
!!! TCTGTACATTTTAAAGCGCA+TGG - chr4_1:59609541-59609560 Msa0560330:five_prime_UTR 35.0%
GCAATCACTGAAGCTGATTA+AGG - chr4_1:59600283-59600302 Msa0560330:three_prime_UTR 40.0%
! GATTAACCAGAGTTTGGGAT+TGG + chr4_1:59600318-59600337 None:intergenic 40.0%
AGAAGAAAGAAGTTGCTTGG+CGG + chr4_1:59600483-59600502 None:intergenic 40.0%
GAGAGAAGAAAGAAGTTGCT+TGG + chr4_1:59600486-59600505 None:intergenic 40.0%
!! AGAAACGAACGTGTCACTTA+TGG + chr4_1:59600516-59600535 None:intergenic 40.0%
! ATTTTTATCTGGGTGTGACG+AGG - chr4_1:59601581-59601600 Msa0560330:CDS 40.0%
! TTGTGTTGGCAAGACTGTTA+TGG - chr4_1:59601741-59601760 Msa0560330:intron 40.0%
!! GATGAATTCTCTTTTGGGTG+AGG - chr4_1:59601763-59601782 Msa0560330:intron 40.0%
!! TTGTTGATTTCGCCATTGGT+GGG - chr4_1:59601976-59601995 Msa0560330:intron 40.0%
! ACATTCCTGGAAGAGCTTTT+TGG - chr4_1:59602232-59602251 Msa0560330:intron 40.0%
CACAATAACAGACTAAGACC+TGG + chr4_1:59602576-59602595 None:intergenic 40.0%
AGAATTCCAGCATCACTTTG+TGG - chr4_1:59602792-59602811 Msa0560330:intron 40.0%
TGCATTTGGAAGAACTCCAA+TGG + chr4_1:59602856-59602875 None:intergenic 40.0%
! GTGTCTAAGCTTTGTGCATT+TGG + chr4_1:59602870-59602889 None:intergenic 40.0%
TTACACATAGTGAGGTGAAC+GGG - chr4_1:59603066-59603085 Msa0560330:intron 40.0%
CAGTGGATACCAAAAAGTCA+AGG - chr4_1:59603230-59603249 Msa0560330:intron 40.0%
! TCTAAGGCTTCATGAGCAAT+CGG - chr4_1:59603568-59603587 Msa0560330:CDS 40.0%
! TGAAAGCATAACCGAAGAGA+GGG + chr4_1:59603627-59603646 None:intergenic 40.0%
! TTGAAAGCATAACCGAAGAG+AGG + chr4_1:59603628-59603647 None:intergenic 40.0%
CAAGGTAGTAAGGATGAAAG+AGG - chr4_1:59603706-59603725 Msa0560330:intron 40.0%
ATCAAAGTCCTGGCATGATT+GGG - chr4_1:59603797-59603816 Msa0560330:CDS 40.0%
AGAGTCTCACTCCATTATAC+TGG - chr4_1:59604017-59604036 Msa0560330:intron 40.0%
CTCACACAAGTGCTTACAAT+AGG - chr4_1:59604050-59604069 Msa0560330:intron 40.0%
AATTGTTCAGTTGCTGTGGT+CGG - chr4_1:59604093-59604112 Msa0560330:intron 40.0%
CTGACTGCAAAAATAGCTCA+TGG - chr4_1:59604463-59604482 Msa0560330:intron 40.0%
GACTGCAAAAATAGCTCATG+GGG - chr4_1:59604465-59604484 Msa0560330:intron 40.0%
ATCCCTATCTCTAAACAACG+TGG - chr4_1:59604538-59604557 Msa0560330:CDS 40.0%
TCCCTATCTCTAAACAACGT+GGG - chr4_1:59604539-59604558 Msa0560330:CDS 40.0%
TCCCACGTTGTTTAGAGATA+GGG + chr4_1:59604543-59604562 None:intergenic 40.0%
ATCCCACGTTGTTTAGAGAT+AGG + chr4_1:59604544-59604563 None:intergenic 40.0%
! CACCTTTTGATGTCCATGTT+TGG - chr4_1:59604571-59604590 Msa0560330:CDS 40.0%
CTCCAAACATGGACATCAAA+AGG + chr4_1:59604576-59604595 None:intergenic 40.0%
ATGGTATCAGGGTCTATTCT+AGG + chr4_1:59604638-59604657 None:intergenic 40.0%
!! CCACATTCTAAGATGGTATC+AGG + chr4_1:59604650-59604669 None:intergenic 40.0%
CCTGATACCATCTTAGAATG+TGG - chr4_1:59604647-59604666 Msa0560330:CDS 40.0%
! CCTTTAGCTAACTTTTAGGC+TGG + chr4_1:59604674-59604693 None:intergenic 40.0%
CCAGCCTAAAAGTTAGCTAA+AGG - chr4_1:59604671-59604690 Msa0560330:intron 40.0%
! GACTGTCTAAAGCCTTGTAA+GGG - chr4_1:59604700-59604719 Msa0560330:intron 40.0%
!! AGCCTTGTAAGGGCTATTTT+TGG - chr4_1:59604710-59604729 Msa0560330:intron 40.0%
!!! GCCTTGTAAGGGCTATTTTT+GGG - chr4_1:59604711-59604730 Msa0560330:intron 40.0%
TCCCAAAAATAGCCCTTACA+AGG + chr4_1:59604715-59604734 None:intergenic 40.0%
GAAAAGAAAGTTTAGGCCAC+TGG + chr4_1:59604859-59604878 None:intergenic 40.0%
GTGAATCCCATATATCACTG+GGG - chr4_1:59604905-59604924 Msa0560330:intron 40.0%
AAACATGTTTGGGCACAACA+CGG + chr4_1:59605195-59605214 None:intergenic 40.0%
CTCATGCCTGACTTTATACA+AGG + chr4_1:59605254-59605273 None:intergenic 40.0%
CTTTGACAGACAAGAAACGA+TGG + chr4_1:59605324-59605343 None:intergenic 40.0%
AAGAAGAGTAGATCAAACGG+AGG - chr4_1:59605658-59605677 Msa0560330:intron 40.0%
CCTGTTGGACAATCAAAACA+AGG + chr4_1:59605893-59605912 None:intergenic 40.0%
!!! CCTTGTTTTGATTGTCCAAC+AGG - chr4_1:59605890-59605909 Msa0560330:intron 40.0%
!!! GTTTTGATTGTCCAACAGGA+TGG - chr4_1:59605894-59605913 Msa0560330:intron 40.0%
CTAATATTCCACCATCCTGT+TGG + chr4_1:59605908-59605927 None:intergenic 40.0%
TTCCAGGTTACGATTCCTTT+AGG - chr4_1:59606148-59606167 Msa0560330:CDS 40.0%
ATCCTAAAGGAATCGTAACC+TGG + chr4_1:59606153-59606172 None:intergenic 40.0%
TCATTCATCTCAAACCATGG+AGG - chr4_1:59606199-59606218 Msa0560330:CDS 40.0%
GAAGAAATTTGTCACCTCCA+TGG + chr4_1:59606216-59606235 None:intergenic 40.0%
GTAAAGCCATGATGTGTAGT+TGG - chr4_1:59606422-59606441 Msa0560330:intron 40.0%
CAGAATCCAACTACACATCA+TGG + chr4_1:59606431-59606450 None:intergenic 40.0%
TGTAGTTGGATTCTGCTTGA+TGG - chr4_1:59606436-59606455 Msa0560330:intron 40.0%
GTAGTTGGATTCTGCTTGAT+GGG - chr4_1:59606437-59606456 Msa0560330:intron 40.0%
TAGTTGGATTCTGCTTGATG+GGG - chr4_1:59606438-59606457 Msa0560330:intron 40.0%
! ATTCTGCTTGATGGGGTTTT+AGG - chr4_1:59606445-59606464 Msa0560330:intron 40.0%
!!! TGGGGTTTTAGGCTTTGTTT+TGG - chr4_1:59606456-59606475 Msa0560330:CDS 40.0%
!!! GCTTTGTTTTGGAGTTAGGA+GGG - chr4_1:59606467-59606486 Msa0560330:CDS 40.0%
GAGTTAGGAGGGAAATGAAA+GGG - chr4_1:59606478-59606497 Msa0560330:CDS 40.0%
TCATTTAAAGGGGAGAGAGA+GGG + chr4_1:59606759-59606778 None:intergenic 40.0%
ATCATTTAAAGGGGAGAGAG+AGG + chr4_1:59606760-59606779 None:intergenic 40.0%
AAAAGCTCGATAGCTTAGCT+TGG - chr4_1:59606916-59606935 Msa0560330:CDS 40.0%
AAAGCTCGATAGCTTAGCTT+GGG - chr4_1:59606917-59606936 Msa0560330:CDS 40.0%
GCAAACTGATGATCTGTTCA+TGG - chr4_1:59607196-59607215 Msa0560330:intron 40.0%
ATTCTGATATGCTGTTGCCT+AGG - chr4_1:59607275-59607294 Msa0560330:intron 40.0%
! ATCTATAGAAGTGCAGGTAC+AGG + chr4_1:59607419-59607438 None:intergenic 40.0%
! CACTGTATCTATAGAAGTGC+AGG + chr4_1:59607425-59607444 None:intergenic 40.0%
CTGCACTTCTATAGATACAG+TGG - chr4_1:59607423-59607442 Msa0560330:intron 40.0%
! TCTCTGAACTTTGGGAAGAA+TGG + chr4_1:59607456-59607475 None:intergenic 40.0%
ATTCTTCCCAAAGTTCAGAG+AGG - chr4_1:59607455-59607474 Msa0560330:intron 40.0%
GAAATCAGGAAAATGTGTGG+TGG + chr4_1:59607518-59607537 None:intergenic 40.0%
! GGATAGCTTATTGTTGGTCT+TGG - chr4_1:59607563-59607582 Msa0560330:intron 40.0%
TCAGAAGAGAGCTGAATTCA+AGG + chr4_1:59607602-59607621 None:intergenic 40.0%
!! CTTCTGAAATTCGCACTTGA+CGG - chr4_1:59607615-59607634 Msa0560330:intron 40.0%
!! TGATGCTACTTTCTTGAGAG+AGG - chr4_1:59607674-59607693 Msa0560330:intron 40.0%
TAAGGCAGTCACTCACTATA+CGG - chr4_1:59608167-59608186 Msa0560330:intron 40.0%
CTTAAAGCTAGGATGGTATG+AGG - chr4_1:59608248-59608267 Msa0560330:intron 40.0%
AGAAGATGGGATTATGACAG+TGG - chr4_1:59608403-59608422 Msa0560330:intron 40.0%
AACCAACTGTTCTACGAATG+GGG - chr4_1:59608491-59608510 Msa0560330:intron 40.0%
!!! CTCTGTGTTATTTTGAGGTG+GGG + chr4_1:59608553-59608572 None:intergenic 40.0%
!!! GCTCTGTGTTATTTTGAGGT+GGG + chr4_1:59608554-59608573 None:intergenic 40.0%
!!! AGCTCTGTGTTATTTTGAGG+TGG + chr4_1:59608555-59608574 None:intergenic 40.0%
ACCTCAAAATAACACAGAGC+TGG - chr4_1:59608554-59608573 Msa0560330:intron 40.0%
ATATGCCTTCACATTCTGCA+TGG + chr4_1:59608789-59608808 None:intergenic 40.0%
CTGCTAGAGAATCACTACTT+CGG - chr4_1:59608822-59608841 Msa0560330:intron 40.0%
ATCACTACTTCGGTATAAGG+AGG - chr4_1:59608832-59608851 Msa0560330:intron 40.0%
!! ACACGCACACATACTAGTTT+TGG + chr4_1:59608957-59608976 None:intergenic 40.0%
TGTTCTTGAACCACAGAACA+AGG - chr4_1:59609204-59609223 Msa0560330:intron 40.0%
AGATTAGCATCCTTGTTCTG+TGG + chr4_1:59609217-59609236 None:intergenic 40.0%
! ATGCTAATCTTGCTGTGCAA+AGG - chr4_1:59609227-59609246 Msa0560330:intron 40.0%
! TGCTAATCTTGCTGTGCAAA+GGG - chr4_1:59609228-59609247 Msa0560330:intron 40.0%
! TTGATTTTCACTTGGAGGGA+GGG + chr4_1:59609297-59609316 None:intergenic 40.0%
!! ATTGATTTTCACTTGGAGGG+AGG + chr4_1:59609298-59609317 None:intergenic 40.0%
TGACTACACCTTCAGAATGA+AGG - chr4_1:59609368-59609387 Msa0560330:CDS 40.0%
! AAACCTCTGTTGATGAGTTG+CGG - chr4_1:59609414-59609433 Msa0560330:CDS 40.0%
CCGACGATTAACCAGAGTTT+GGG + chr4_1:59600323-59600342 None:intergenic 45.0%
CCCAAACTCTGGTTAATCGT+CGG - chr4_1:59600320-59600339 Msa0560330:three_prime_UTR 45.0%
TCCGACGATTAACCAGAGTT+TGG + chr4_1:59600324-59600343 None:intergenic 45.0%
CTCTGGTTAATCGTCGGAAT+TGG - chr4_1:59600326-59600345 Msa0560330:three_prime_UTR 45.0%
TGTGACGAGGTTTCTGTTGT+TGG - chr4_1:59601594-59601613 Msa0560330:CDS 45.0%
GTGACGAGGTTTCTGTTGTT+GGG - chr4_1:59601595-59601614 Msa0560330:CDS 45.0%
TGACGAGGTTTCTGTTGTTG+GGG - chr4_1:59601596-59601615 Msa0560330:CDS 45.0%
TTCAATGGGGCTACTTGTGT+TGG - chr4_1:59601727-59601746 Msa0560330:intron 45.0%
! GATGGCATCTGAGGATTAGT+TGG + chr4_1:59601903-59601922 None:intergenic 45.0%
!! GGACTTGTTGATTTCGCCAT+TGG - chr4_1:59601972-59601991 Msa0560330:intron 45.0%
!! CTTGTTGATTTCGCCATTGG+TGG - chr4_1:59601975-59601994 Msa0560330:intron 45.0%
TACAGCCAAAAAGCTCTTCC+AGG + chr4_1:59602240-59602259 None:intergenic 45.0%
! TGTCATTTCCCTCTACCACA+AGG + chr4_1:59602474-59602493 None:intergenic 45.0%
!!! TTTGGTTTTAGACCCTCCCA+CGG - chr4_1:59602819-59602838 Msa0560330:intron 45.0%
AATGGTAGATATAGCCCCGT+GGG + chr4_1:59602838-59602857 None:intergenic 45.0%
GCACAAAGCTTAGACACCAT+TGG - chr4_1:59602873-59602892 Msa0560330:intron 45.0%
AAGCATGTCCAACACGATGT+AGG + chr4_1:59603195-59603214 None:intergenic 45.0%
AGATCAGGCTCCAAAGCATA+TGG - chr4_1:59603511-59603530 Msa0560330:CDS 45.0%
!! CTAAAAAGGTGCCCAGTCTA+AGG - chr4_1:59603552-59603571 Msa0560330:CDS 45.0%
TGCTCATGAAGCCTTAGACT+GGG + chr4_1:59603566-59603585 None:intergenic 45.0%
TTGCTCATGAAGCCTTAGAC+TGG + chr4_1:59603567-59603586 None:intergenic 45.0%
CAATCATGCCAGGACTTTGA+TGG + chr4_1:59603798-59603817 None:intergenic 45.0%
CATCAAAGTCCTGGCATGAT+TGG - chr4_1:59603796-59603815 Msa0560330:CDS 45.0%
AGTACTCTTCACTCAGCAAG+TGG + chr4_1:59604180-59604199 None:intergenic 45.0%
CAAAAATAGCTCATGGGGTG+AGG - chr4_1:59604470-59604489 Msa0560330:intron 45.0%
GATGTCCATGTTTGGAGATC+TGG - chr4_1:59604579-59604598 Msa0560330:CDS 45.0%
AAGCTCCAGATCTCCAAACA+TGG + chr4_1:59604587-59604606 None:intergenic 45.0%
! TCTGGAGCTTAGAGAAATGC+AGG - chr4_1:59604597-59604616 Msa0560330:CDS 45.0%
! GGACTGTCTAAAGCCTTGTA+AGG - chr4_1:59604699-59604718 Msa0560330:intron 45.0%
AGGCATCCCCAGTGATATAT+GGG + chr4_1:59604914-59604933 None:intergenic 45.0%
GGGTTAAATCAGTCAAACGC+AGG - chr4_1:59605164-59605183 Msa0560330:intron 45.0%
ATATTGTCACTCTGGACTCC+AGG + chr4_1:59605476-59605495 None:intergenic 45.0%
CGGAGGAGTCAAGTTAAAAG+AGG - chr4_1:59605675-59605694 Msa0560330:intron 45.0%
AAAGAGGTAGAGGAAGACCT+AGG - chr4_1:59605691-59605710 Msa0560330:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_1:59605821-59605840 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:59605822-59605841 None:intergenic 45.0%
AAGGAGATAGTAGGGTAGCA+TGG + chr4_1:59605874-59605893 None:intergenic 45.0%
TTGATTGTCCAACAGGATGG+TGG - chr4_1:59605897-59605916 Msa0560330:intron 45.0%
CTGACAACAACCAGACATAC+TGG + chr4_1:59606027-59606046 None:intergenic 45.0%
CAGTATGTCTGGTTGTTGTC+AGG - chr4_1:59606025-59606044 Msa0560330:intron 45.0%
GTATACAGCTCTTCAAGAGC+AGG - chr4_1:59606255-59606274 Msa0560330:CDS 45.0%
!!! GGCTTTGTTTTGGAGTTAGG+AGG - chr4_1:59606466-59606485 Msa0560330:CDS 45.0%
GGAGTTAGGAGGGAAATGAA+AGG - chr4_1:59606477-59606496 Msa0560330:CDS 45.0%
TTAGGAGGGAAATGAAAGGG+TGG - chr4_1:59606481-59606500 Msa0560330:CDS 45.0%
TAGGAGGGAAATGAAAGGGT+GGG - chr4_1:59606482-59606501 Msa0560330:CDS 45.0%
! GAAATGAAAGGGTGGGCTTT+GGG - chr4_1:59606489-59606508 Msa0560330:CDS 45.0%
! AAATGAAAGGGTGGGCTTTG+GGG - chr4_1:59606490-59606509 Msa0560330:CDS 45.0%
AAGGAATGTGGAACGAGAAG+TGG - chr4_1:59606515-59606534 Msa0560330:CDS 45.0%
AATAAACCCCCCATGCAAAG+TGG + chr4_1:59606557-59606576 None:intergenic 45.0%
! ACGTATTGCGAGAGGGTTTT+TGG - chr4_1:59606620-59606639 Msa0560330:intron 45.0%
!! TATTGCGAGAGGGTTTTTGG+AGG - chr4_1:59606623-59606642 Msa0560330:intron 45.0%
!! ATTGCGAGAGGGTTTTTGGA+GGG - chr4_1:59606624-59606643 Msa0560330:intron 45.0%
ATTTAAAGGGGAGAGAGAGG+GGG + chr4_1:59606757-59606776 None:intergenic 45.0%
CATTTAAAGGGGAGAGAGAG+GGG + chr4_1:59606758-59606777 None:intergenic 45.0%
AAAATGCTAACTAGTGCCCC+AGG - chr4_1:59606996-59607015 Msa0560330:CDS 45.0%
AAATGCTAACTAGTGCCCCA+GGG - chr4_1:59606997-59607016 Msa0560330:CDS 45.0%
GCTTTCCTTAACTAATGCCC+CGG - chr4_1:59607125-59607144 Msa0560330:intron 45.0%
!! GAGAAGGTATTCTGTGCAAC+AGG + chr4_1:59607314-59607333 None:intergenic 45.0%
ACGACACAAAGCGTAAGAGA+AGG + chr4_1:59607330-59607349 None:intergenic 45.0%
GTGGGTAAGTGTGAGAAATC+AGG + chr4_1:59607532-59607551 None:intergenic 45.0%
!! ACTTACCCACCGATTCTGTA+TGG - chr4_1:59607542-59607561 Msa0560330:intron 45.0%
GCTATCCATACAGAATCGGT+GGG + chr4_1:59607550-59607569 None:intergenic 45.0%
AGCTATCCATACAGAATCGG+TGG + chr4_1:59607551-59607570 None:intergenic 45.0%
AGTCCGCTTGAAGACTCAAA+GGG + chr4_1:59607780-59607799 None:intergenic 45.0%
AAGTCCGCTTGAAGACTCAA+AGG + chr4_1:59607781-59607800 None:intergenic 45.0%
CTTTGAGTGGGCATCAACAA+TGG + chr4_1:59607817-59607836 None:intergenic 45.0%
ATGCCCACTCAAAGTACACT+TGG - chr4_1:59607823-59607842 Msa0560330:CDS 45.0%
! AGGATGTCCGGACAGTTTTT+GGG + chr4_1:59608020-59608039 None:intergenic 45.0%
! AAGGATGTCCGGACAGTTTT+TGG + chr4_1:59608021-59608040 None:intergenic 45.0%
AAGGCAGTCACTCACTATAC+GGG - chr4_1:59608168-59608187 Msa0560330:intron 45.0%
ACGGGGGCTATTGAATTGAA+TGG - chr4_1:59608186-59608205 Msa0560330:intron 45.0%
CGGGGGCTATTGAATTGAAT+GGG - chr4_1:59608187-59608206 Msa0560330:intron 45.0%
CTGCTTGCTTAAAGCTAGGA+TGG - chr4_1:59608241-59608260 Msa0560330:intron 45.0%
TGTGAGGATACTTGACAGAC+AGG + chr4_1:59608279-59608298 None:intergenic 45.0%
GAACGGCAATCACAGGAAAA+TGG + chr4_1:59608308-59608327 None:intergenic 45.0%
CTTATGCAGCTTTCAGCTAG+CGG - chr4_1:59608339-59608358 Msa0560330:intron 45.0%
!!! TGTTATTTTGAGGTGGGGAG+GGG + chr4_1:59608548-59608567 None:intergenic 45.0%
!!! GTGTTATTTTGAGGTGGGGA+GGG + chr4_1:59608549-59608568 None:intergenic 45.0%
!!! TGTGTTATTTTGAGGTGGGG+AGG + chr4_1:59608550-59608569 None:intergenic 45.0%
!!! GCCAGCTCTGTGTTATTTTG+AGG + chr4_1:59608558-59608577 None:intergenic 45.0%
CAATGAGCTTCACTACGCTA+CGG + chr4_1:59609041-59609060 None:intergenic 45.0%
!!! ATAAAAATTGAAAAATTTTT+AGG - chr4_1:59604952-59604971 Msa0560330:intron 5.0%
CAGCTTCAGTGATTGCGACA+TGG + chr4_1:59600279-59600298 None:intergenic 50.0%
ACGCTTCCAATCCCAAACTC+TGG - chr4_1:59600309-59600328 Msa0560330:three_prime_UTR 50.0%
TATTGCGGCAGCGTCTTCTA+CGG + chr4_1:59600388-59600407 None:intergenic 50.0%
TGACGTGAAGGGCTATGTGA+CGG - chr4_1:59601630-59601649 Msa0560330:CDS 50.0%
TGACCGCTCTGCTCTTCAAT+GGG - chr4_1:59601713-59601732 Msa0560330:intron 50.0%
TTCAGCAGTAGCAGTTGCTG+CGG - chr4_1:59601950-59601969 Msa0560330:intron 50.0%
CAGCTATTGAGGCCACAACA+TGG + chr4_1:59602687-59602706 None:intergenic 50.0%
!!! TTGGTTTTAGACCCTCCCAC+GGG - chr4_1:59602820-59602839 Msa0560330:intron 50.0%
CAATGGTAGATATAGCCCCG+TGG + chr4_1:59602839-59602858 None:intergenic 50.0%
CACGGGGCTATATCTACCAT+TGG - chr4_1:59602837-59602856 Msa0560330:intron 50.0%
ATGTAGGACAGATGGATCGC+GGG + chr4_1:59603179-59603198 None:intergenic 50.0%
GATGTAGGACAGATGGATCG+CGG + chr4_1:59603180-59603199 None:intergenic 50.0%
CCAACACGATGTAGGACAGA+TGG + chr4_1:59603187-59603206 None:intergenic 50.0%
CCATCTGTCCTACATCGTGT+TGG - chr4_1:59603184-59603203 Msa0560330:intron 50.0%
CAATCGGCACCCCAACAAAA+TGG - chr4_1:59603584-59603603 Msa0560330:CDS 50.0%
ACCTGATGCCATCAAAGTCC+TGG - chr4_1:59603787-59603806 Msa0560330:CDS 50.0%
TTCCTAGACCCAATCATGCC+AGG + chr4_1:59603808-59603827 None:intergenic 50.0%
GGCATGATTGGGTCTAGGAA+AGG - chr4_1:59603808-59603827 Msa0560330:CDS 50.0%
TTCACTCAGCAAGTGGTGGT+GGG + chr4_1:59604173-59604192 None:intergenic 50.0%
ACTCTTCACTCAGCAAGTGG+TGG + chr4_1:59604177-59604196 None:intergenic 50.0%
GGAGCTTAGAGAAATGCAGG+TGG - chr4_1:59604600-59604619 Msa0560330:CDS 50.0%
! GGCTGGTCCACATTCTAAGA+TGG + chr4_1:59604657-59604676 None:intergenic 50.0%
CAGGCATCCCCAGTGATATA+TGG + chr4_1:59604915-59604934 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_1:59605817-59605836 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:59605823-59605842 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:59605820-59605839 Msa0560330:intron 50.0%
!! AGTGGACTGTCTGCTACAGA+GGG + chr4_1:59605936-59605955 None:intergenic 50.0%
!! TAGTGGACTGTCTGCTACAG+AGG + chr4_1:59605937-59605956 None:intergenic 50.0%
TCCAGCATTGCCAGTATGTC+TGG - chr4_1:59606014-59606033 Msa0560330:intron 50.0%
ACCAGACATACTGGCAATGC+TGG + chr4_1:59606018-59606037 None:intergenic 50.0%
! GGAAATGAAAGGGTGGGCTT+TGG - chr4_1:59606488-59606507 Msa0560330:CDS 50.0%
!! GGCTTTGGGGAAAAGGAATG+TGG - chr4_1:59606503-59606522 Msa0560330:CDS 50.0%
!! AGAGGGTTTTTGGAGGGCTT+AGG - chr4_1:59606630-59606649 Msa0560330:intron 50.0%
TTTAAAGGGGAGAGAGAGGG+GGG + chr4_1:59606756-59606775 None:intergenic 50.0%
AATGCTAACTAGTGCCCCAG+GGG - chr4_1:59606998-59607017 Msa0560330:CDS 50.0%
TCTCCTTAACTAGTGCCCCT+GGG + chr4_1:59607016-59607035 None:intergenic 50.0%
TTCCTTAACTAATGCCCCGG+AGG - chr4_1:59607128-59607147 Msa0560330:intron 50.0%
TCATGCTAACTAGTGCCTCC+GGG + chr4_1:59607146-59607165 None:intergenic 50.0%
GTCATGCTAACTAGTGCCTC+CGG + chr4_1:59607147-59607166 None:intergenic 50.0%
CAGGTTGCATAGTCTGACCT+AGG + chr4_1:59607295-59607314 None:intergenic 50.0%
TCCGCTTGAAGACTCAAAGG+GGG + chr4_1:59607778-59607797 None:intergenic 50.0%
GTCCGCTTGAAGACTCAAAG+GGG + chr4_1:59607779-59607798 None:intergenic 50.0%
!!! GACAGTTTTTGGGTTCCTCG+TGG + chr4_1:59608010-59608029 None:intergenic 50.0%
CGAGGAACCCAAAAACTGTC+CGG - chr4_1:59608010-59608029 Msa0560330:intron 50.0%
AGGCAGTCACTCACTATACG+GGG - chr4_1:59608169-59608188 Msa0560330:intron 50.0%
! GCTTTAAGCAAGCAGCTGCT+CGG + chr4_1:59608236-59608255 None:intergenic 50.0%
GCAGCTGCTTGCTTAAAGCT+AGG - chr4_1:59608237-59608256 Msa0560330:intron 50.0%
AGCGGAAGAAGACTGCAGTA+AGG - chr4_1:59608357-59608376 Msa0560330:intron 50.0%
TGGGATTATGACAGTGGCCA+TGG - chr4_1:59608409-59608428 Msa0560330:intron 50.0%
GACCCCATTCGTAGAACAGT+TGG + chr4_1:59608496-59608515 None:intergenic 50.0%
CGCACTATTCTCAGTACAGC+TGG + chr4_1:59608760-59608779 None:intergenic 50.0%
! GTGAAGGCATATCTGAGACG+TGG - chr4_1:59608797-59608816 Msa0560330:intron 50.0%
CGGTATAAGGAGGCTCTTGA+AGG - chr4_1:59608842-59608861 Msa0560330:intron 50.0%
! TTTTCACTTGGAGGGAGGGA+GGG + chr4_1:59609293-59609312 None:intergenic 50.0%
! ATTTTCACTTGGAGGGAGGG+AGG + chr4_1:59609294-59609313 None:intergenic 50.0%
ATGCCGCAACTCATCAACAG+AGG + chr4_1:59609420-59609439 None:intergenic 50.0%
ATCGTCGGAATTGGACTCGC+CGG - chr4_1:59600335-59600354 Msa0560330:three_prime_UTR 55.0%
GAAAGAAGTTGCTTGGCGGC+AGG + chr4_1:59600479-59600498 None:intergenic 55.0%
GACGTGAAGGGCTATGTGAC+GGG - chr4_1:59601631-59601650 Msa0560330:CDS 55.0%
ACGTGAAGGGCTATGTGACG+GGG - chr4_1:59601632-59601651 Msa0560330:CDS 55.0%
! AAGGGCTATGTGACGGGGTT+TGG - chr4_1:59601637-59601656 Msa0560330:CDS 55.0%
CGGGGTTTGGAAATCCTGTG+TGG - chr4_1:59601650-59601669 Msa0560330:intron 55.0%
TCGTGCGTTCTCTTCCACAC+AGG + chr4_1:59601667-59601686 None:intergenic 55.0%
TGTGTGGAAGAGAACGCACG+AGG - chr4_1:59601666-59601685 Msa0560330:intron 55.0%
GTGACCGCTCTGCTCTTCAA+TGG - chr4_1:59601712-59601731 Msa0560330:intron 55.0%
GACCGCTCTGCTCTTCAATG+GGG - chr4_1:59601714-59601733 Msa0560330:intron 55.0%
AGCCCCATTGAAGAGCAGAG+CGG + chr4_1:59601719-59601738 None:intergenic 55.0%
TCAGATGCCATCGTGTGTCC+CGG - chr4_1:59601911-59601930 Msa0560330:intron 55.0%
AACCACTAGAAGACCCTCCC+GGG + chr4_1:59601932-59601951 None:intergenic 55.0%
GAACCACTAGAAGACCCTCC+CGG + chr4_1:59601933-59601952 None:intergenic 55.0%
TCAGCAGTAGCAGTTGCTGC+GGG - chr4_1:59601951-59601970 Msa0560330:intron 55.0%
!! TCGCCATTGGTGGGTTTGCA+TGG - chr4_1:59601985-59602004 Msa0560330:intron 55.0%
GTGCCATGCAAACCCACCAA+TGG + chr4_1:59601991-59602010 None:intergenic 55.0%
!!! TGGTTTTAGACCCTCCCACG+GGG - chr4_1:59602821-59602840 Msa0560330:intron 55.0%
GTAGATATAGCCCCGTGGGA+GGG + chr4_1:59602834-59602853 None:intergenic 55.0%
! GCCAGGACTTTGATGGCATC+AGG + chr4_1:59603791-59603810 None:intergenic 55.0%
GTCCTGGCATGATTGGGTCT+AGG - chr4_1:59603803-59603822 Msa0560330:CDS 55.0%
! TCACTCAGCAAGTGGTGGTG+GGG + chr4_1:59604172-59604191 None:intergenic 55.0%
CTTCACTCAGCAAGTGGTGG+TGG + chr4_1:59604174-59604193 None:intergenic 55.0%
ATAGCTCATGGGGTGAGGAC+TGG - chr4_1:59604475-59604494 Msa0560330:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_1:59605809-59605828 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_1:59605808-59605827 Msa0560330:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_1:59605809-59605828 Msa0560330:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_1:59605815-59605834 Msa0560330:intron 55.0%
! CTTCAAGAGCAGGCTAGCTC+TGG - chr4_1:59606265-59606284 Msa0560330:CDS 55.0%
!! AAGGGTGGGCTTTGGGGAAA+AGG - chr4_1:59606496-59606515 Msa0560330:CDS 55.0%
CTCCTTAACTAGTGCCCCTG+GGG + chr4_1:59607015-59607034 None:intergenic 55.0%
GTCTCCTTAACTAGTGCCCC+TGG + chr4_1:59607017-59607036 None:intergenic 55.0%
! TGCCTCCGGGGCATTAGTTA+AGG + chr4_1:59607133-59607152 None:intergenic 55.0%
CATGCTAACTAGTGCCTCCG+GGG + chr4_1:59607145-59607164 None:intergenic 55.0%
AGTGCAGGTACAGGAGCGAT+TGG + chr4_1:59607410-59607429 None:intergenic 55.0%
GCCCCCTTTGAGTCTTCAAG+CGG - chr4_1:59607774-59607793 Msa0560330:intron 55.0%
GGCAGTCACTCACTATACGG+GGG - chr4_1:59608170-59608189 Msa0560330:intron 55.0%
CAGGTGAGAACGGCAATCAC+AGG + chr4_1:59608315-59608334 None:intergenic 55.0%
GCGTCTTCTACGGCGAGTCT+CGG + chr4_1:59600378-59600397 None:intergenic 60.0%
GGAGGAGGAGGCTGAGGAAA+GGG + chr4_1:59600458-59600477 None:intergenic 60.0%
AGGAGGAGGAGGCTGAGGAA+AGG + chr4_1:59600459-59600478 None:intergenic 60.0%
AGAAGTTGCTTGGCGGCAGG+AGG + chr4_1:59600476-59600495 None:intergenic 60.0%
GTGGAAGAGAACGCACGAGG+AGG - chr4_1:59601669-59601688 Msa0560330:intron 60.0%
GAAGAGAACGCACGAGGAGG+CGG - chr4_1:59601672-59601691 Msa0560330:intron 60.0%
GGGACACACGATGGCATCTG+AGG + chr4_1:59601912-59601931 None:intergenic 60.0%
CAGATGCCATCGTGTGTCCC+GGG - chr4_1:59601912-59601931 Msa0560330:intron 60.0%
GGTAGATATAGCCCCGTGGG+AGG + chr4_1:59602835-59602854 None:intergenic 60.0%
!! ACTCAGCAAGTGGTGGTGGG+GGG + chr4_1:59604170-59604189 None:intergenic 60.0%
!! CACTCAGCAAGTGGTGGTGG+GGG + chr4_1:59604171-59604190 None:intergenic 60.0%
TGACCGCGCTCCACTTTGCA+TGG - chr4_1:59606544-59606563 Msa0560330:CDS 60.0%
GACCGCGCTCCACTTTGCAT+GGG - chr4_1:59606545-59606564 Msa0560330:CDS 60.0%
ACCGCGCTCCACTTTGCATG+GGG - chr4_1:59606546-59606565 Msa0560330:CDS 60.0%
!! TGCCCCAGGGGCACTAGTTA+AGG - chr4_1:59607010-59607029 Msa0560330:CDS 60.0%
GTCGGAATTGGACTCGCCGG+CGG - chr4_1:59600338-59600357 Msa0560330:three_prime_UTR 65.0%
TCGGAATTGGACTCGCCGGC+GGG - chr4_1:59600339-59600358 Msa0560330:three_prime_UTR 65.0%
GGAGAGAACGACGATCCCGC+CGG + chr4_1:59600357-59600376 None:intergenic 65.0%
AGTTGCTTGGCGGCAGGAGG+AGG + chr4_1:59600473-59600492 None:intergenic 65.0%
GGAGGCGGAGAAGACTGCGA+TGG - chr4_1:59601687-59601706 Msa0560330:intron 65.0%
GGCGGAGAAGACTGCGATGG+TGG - chr4_1:59601690-59601709 Msa0560330:intron 65.0%
ATGCCATCGTGTGTCCCGGG+AGG - chr4_1:59601915-59601934 Msa0560330:intron 65.0%
TGCCATCGTGTGTCCCGGGA+GGG - chr4_1:59601916-59601935 Msa0560330:intron 65.0%
GTCCCGGGAGGGTCTTCTAG+TGG - chr4_1:59601927-59601946 Msa0560330:intron 65.0%
TCACTGGGGATGCCTGTGCC+TGG - chr4_1:59604919-59604938 Msa0560330:intron 65.0%
CCCCCATGCAAAGTGGAGCG+CGG + chr4_1:59606550-59606569 None:intergenic 65.0%
CCGCGCTCCACTTTGCATGG+GGG - chr4_1:59606547-59606566 Msa0560330:CDS 65.0%
CGCGCTCCACTTTGCATGGG+GGG - chr4_1:59606548-59606567 Msa0560330:CDS 65.0%
AAGGGGAGAGAGAGGGGGGT+GGG + chr4_1:59606752-59606771 None:intergenic 65.0%
AAAGGGGAGAGAGAGGGGGG+TGG + chr4_1:59606753-59606772 None:intergenic 65.0%
CACTTGGAGGGAGGGAGGGA+GGG + chr4_1:59609289-59609308 None:intergenic 65.0%
TCACTTGGAGGGAGGGAGGG+AGG + chr4_1:59609290-59609309 None:intergenic 65.0%
TGCTTGGCGGCAGGAGGAGG+AGG + chr4_1:59600470-59600489 None:intergenic 70.0%
GACCCTCCCGGGACACACGA+TGG + chr4_1:59601921-59601940 None:intergenic 70.0%
AGGGGAGAGAGAGGGGGGTG+GGG + chr4_1:59606751-59606770 None:intergenic 70.0%
TGGAGGGAGGGAGGGAGGGA+GGG + chr4_1:59609285-59609304 None:intergenic 70.0%
TTGGAGGGAGGGAGGGAGGG+AGG + chr4_1:59609286-59609305 None:intergenic 70.0%
GCGGCAGGAGGAGGAGGCTG+AGG + chr4_1:59600464-59600483 None:intergenic 75.0%
AGAGAGAGGGGGGTGGGGGG+GGG + chr4_1:59606746-59606765 None:intergenic 75.0%
GAGAGAGAGGGGGGTGGGGG+GGG + chr4_1:59606747-59606766 None:intergenic 75.0%
GGAGAGAGAGGGGGGTGGGG+GGG + chr4_1:59606748-59606767 None:intergenic 75.0%
GGGAGAGAGAGGGGGGTGGG+GGG + chr4_1:59606749-59606768 None:intergenic 75.0%
GGGGAGAGAGAGGGGGGTGG+GGG + chr4_1:59606750-59606769 None:intergenic 75.0%
! AGAGAGGGGGGTGGGGGGGG+GGG + chr4_1:59606744-59606763 None:intergenic 80.0%
! GAGAGAGGGGGGTGGGGGGG+GGG + chr4_1:59606745-59606764 None:intergenic 80.0%
! AGAGGGGGGTGGGGGGGGGG+GGG + chr4_1:59606742-59606761 None:intergenic 85.0%
! GAGAGGGGGGTGGGGGGGGG+GGG + chr4_1:59606743-59606762 None:intergenic 85.0%
! AGGGGGGTGGGGGGGGGGGG+GGG + chr4_1:59606740-59606759 None:intergenic 90.0%
! GAGGGGGGTGGGGGGGGGGG+GGG + chr4_1:59606741-59606760 None:intergenic 90.0%
! GGGGGGGGGGGGGGGTGGGG+AGG + chr4_1:59606722-59606741 None:intergenic 95.0%
! GGGGGGGGGGGGGGGGGGTG+GGG + chr4_1:59606725-59606744 None:intergenic 95.0%
! GGGGGGGGGGGGGGGGGGGT+GGG + chr4_1:59606726-59606745 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606733-59606752 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606734-59606753 None:intergenic 95.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + chr4_1:59606735-59606754 None:intergenic 95.0%
! GGGTGGGGGGGGGGGGGGGG+GGG + chr4_1:59606736-59606755 None:intergenic 95.0%
! GGGGTGGGGGGGGGGGGGGG+GGG + chr4_1:59606737-59606756 None:intergenic 95.0%
! GGGGGTGGGGGGGGGGGGGG+GGG + chr4_1:59606738-59606757 None:intergenic 95.0%
! GGGGGGTGGGGGGGGGGGGG+GGG + chr4_1:59606739-59606758 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59600164 59609638 59600164 ID=Msa0560330;Name=Msa0560330
chr4_1 mRNA 59600164 59609638 59600164 ID=Msa0560330-mRNA-1;Parent=Msa0560330;Name=Msa0560330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=114|1|1|1|1|1|13|368|604
chr4_1 exon 59600164 59600614 59600164 ID=Msa0560330-mRNA-1:exon:18459;Parent=Msa0560330-mRNA-1
chr4_1 exon 59600939 59601008 59600939 ID=Msa0560330-mRNA-1:exon:18458;Parent=Msa0560330-mRNA-1
chr4_1 exon 59601403 59601454 59601403 ID=Msa0560330-mRNA-1:exon:18457;Parent=Msa0560330-mRNA-1
chr4_1 exon 59601540 59601667 59601540 ID=Msa0560330-mRNA-1:exon:18456;Parent=Msa0560330-mRNA-1
chr4_1 exon 59603448 59603648 59603448 ID=Msa0560330-mRNA-1:exon:18455;Parent=Msa0560330-mRNA-1
chr4_1 exon 59603756 59603890 59603756 ID=Msa0560330-mRNA-1:exon:18454;Parent=Msa0560330-mRNA-1
chr4_1 exon 59604499 59604667 59604499 ID=Msa0560330-mRNA-1:exon:18453;Parent=Msa0560330-mRNA-1
chr4_1 exon 59606148 59606289 59606148 ID=Msa0560330-mRNA-1:exon:18452;Parent=Msa0560330-mRNA-1
chr4_1 exon 59606453 59606635 59606453 ID=Msa0560330-mRNA-1:exon:18451;Parent=Msa0560330-mRNA-1
chr4_1 exon 59606908 59607033 59606908 ID=Msa0560330-mRNA-1:exon:18450;Parent=Msa0560330-mRNA-1
chr4_1 exon 59607809 59607933 59607809 ID=Msa0560330-mRNA-1:exon:18449;Parent=Msa0560330-mRNA-1
chr4_1 exon 59608023 59608175 59608023 ID=Msa0560330-mRNA-1:exon:18448;Parent=Msa0560330-mRNA-1
chr4_1 exon 59609277 59609638 59609277 ID=Msa0560330-mRNA-1:exon:18447;Parent=Msa0560330-mRNA-1
chr4_1 five_prime_UTR 59609525 59609638 59609525 ID=Msa0560330-mRNA-1:five_prime_utr;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59609277 59609524 59609277 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59608023 59608175 59608023 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59607809 59607933 59607809 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59606908 59607033 59606908 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59606453 59606635 59606453 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59606148 59606289 59606148 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59604499 59604667 59604499 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59603756 59603890 59603756 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59603448 59603648 59603448 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59601540 59601667 59601540 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59601403 59601454 59601403 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59600939 59601008 59600939 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 CDS 59600532 59600614 59600532 ID=Msa0560330-mRNA-1:cds;Parent=Msa0560330-mRNA-1
chr4_1 three_prime_UTR 59600164 59600531 59600164 ID=Msa0560330-mRNA-1:three_prime_utr;Parent=Msa0560330-mRNA-1
Gene Sequence

>Msa0560330

ATGTCGCAATCACTGAAGCTGATTAAGGATCACGCTTCCAATCCCAAACTCTGGTTAATCGTCGGAATTGGACTCGCCGGCGGGATCGTCGTTCTCTCCGAGACTCGCCGTAGAAGACGCTGCCGCAATACTCCTAAACCTGATTTTGGTGCTTTTATTGAACGCTTTGAGCTTCTTCCCTTTCCTCAGCCTCCTCCTCCTGCCGCCAAGCAACTTCTTTCTTCTCTCACTTTTGCCATAAGTGACACATTTGACGTGAAGGGCTATGTGACGGGGTTTGGAAATCCTGTGTGGAAGAGAACGCACGAGGAGGCGGAGAAGACTGCGATGGTGGTGACCGCTCTGCTCTTCAATGGGGCTACTTGTGTTGGCAAGACTGTTATGGATGAATTCTCTTTTGGATTTTCTGGTGAGAACAAGTATTATGGTACTCCAACTAATCCTCAGATGCCATCGTGTGTCCCGGGAGGGTCTTCTAGTGGTTCAGCAGTAGCAGTTGCTGCGGGACTTGTTGATTTCGCCATTGGTACTGATACTACAGGATGTGTGAGAATTCCAGCATCACTTTGTGGTATTTTTGGTTTTAGACCCTCCCACGGGGCTATATCTACCATTGGAGTTCTTCCAAATGCACAAAGCTTAGACACCATTGGATGGTTTGCCCGCGATCCATCTGTCCTACATCGTGTTGGACATGCTTTACTTCAATTGAATTCAGTGGATACCAAAAAGTCAAGGTGTATCATATTTGCTGATGATCTCTTTCAATCATCCAAAGATGCTACACAAAAGACAATATATGTCATTGGTAAAGCTATCGAGAATATGTCTGGATATCAGGCTCCAAAGCATATGGATCTTTGTGAGTATATTGCTAAAAAGGTGCCCAGTCTAAGGCTTCATGAGCAATCGGCACCCCAACAAAATGGAACATCTATATTGAAAACCCTCTCTTCGGTTATGCTTTCAATACAAAGATATGAATTTAAATCCAATTATGAAGAATGGGTTAAATCAGTCAAACGCAGGTTAAGCCGTGTTGTGCCCAAACATGTTTATGAAGCCATTAATACTACATACGATAATGTAAAAGCCTTGTATAAAGTCAGGCATGAGATGCATGCTGCATTTCAAAGTCTGTTAAAGGATGGTGGAATATTAGTTATTCCCTCTGTAGCAGACAGTCCACTAAAGCTTAATGCAAAGAAAGGTTTTTGCTCTGAGTTCCATGATAGAAGTTTTGCATTATCCAGCATTGCCAGTATGTCTGGTTGTTGTCAGGTTACGATTCCTTTAGGATATCATGATGATTGTTGTATTTCTGTTTCATTCATCTCAAACCATGGAGGTGACAAATTTCTTCTAGACACTATCTTGGATATGTATACAGCTCTTCAAGAGCAGGCTAGCTCTGGTTTCAATTCCATTCCATTACCAAACATCAATGGAAATACCGAACCTTCTGAACTTTTAAAGGAGAAGGGAAACACGGCATTTAAAGAAAAGCAATGGGATAAGGCAGTCACTCACTATACGGGGGCTATTGAATTGAATGGGACGAATGCAACTTACTACTGCAACCGAGCAGCTGCTTGCTTAAAGCTAGGATGCTTTCAGCTAGCGGAAGAAGACTGCAGTAAGGCAATATTGCTTGATAAGAAGAATGTGAAGGCATATCTGAGACGTGGAACTGCTAGAGAATCACTACTTCGGTATAAGGAGGCTCTTGAAGATTTTAAGCATGCTCTTGTTCTTGAACCACAGAACAAGGATGCTAATCTTGCTGTGCAAAGGGTCAGAAAATTGACGAGTTGA
Protein sequence

>Msa0560330

MSQSLKLIKDHASNPKLWLIVGIGLAGGIVVLSETRRRRRCRNTPKPDFGAFIERFELLPFPQPPPPAAKQLLSSLTFAISDTFDVKGYVTGFGNPVWKRTHEEAEKTAMVVTALLFNGATCVGKTVMDEFSFGFSGENKYYGTPTNPQMPSCVPGGSSSGSAVAVAAGLVDFAIGTDTTGCVRIPASLCGIFGFRPSHGAISTIGVLPNAQSLDTIGWFARDPSVLHRVGHALLQLNSVDTKKSRCIIFADDLFQSSKDATQKTIYVIGKAIENMSGYQAPKHMDLCEYIAKKVPSLRLHEQSAPQQNGTSILKTLSSVMLSIQRYEFKSNYEEWVKSVKRRLSRVVPKHVYEAINTTYDNVKALYKVRHEMHAAFQSLLKDGGILVIPSVADSPLKLNAKKGFCSEFHDRSFALSSIASMSGCCQVTIPLGYHDDCCISVSFISNHGGDKFLLDTILDMYTALQEQASSGFNSIPLPNINGNTEPSELLKEKGNTAFKEKQWDKAVTHYTGAIELNGTNATYYCNRAAACLKLGCFQLAEEDCSKAILLDKKNVKAYLRRGTARESLLRYKEALEDFKHALVLEPQNKDANLAVQRVRKLTS*