Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562170 | XP_039685386.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.12e-88 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562170 | sp|Q9ZQX4|VATF_ARATH | 87.302 | 126 | 16 | 0 | 1 | 126 | 1 | 126 | 4.57e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562170 | I3SQD3 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.97e-88 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562170 | Msa0616090 | 0.996418 | 2.819168e-227 | -8.615850e-47 |
| Msa0562170 | Msa0699300 | 0.819399 | 1.185474e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562170 | MtrunA17_Chr8g0375211 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 3.79e-92 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562170 | AT4G02620.1 | 87.302 | 126 | 16 | 0 | 1 | 126 | 1 | 126 | 4.65e-80 | 231 |
Find 52 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGATGGGCTAATTTA+TGG | 0.167977 | 4_1:+61805036 | Msa0562170:three_prime_UTR |
| ATCCTTTGATTGCAGCTTTC+AGG | 0.178093 | 4_1:+61804899 | Msa0562170:three_prime_UTR |
| TACCATAGTTGGGTTTCTTT+TGG | 0.252743 | 4_1:+61803333 | Msa0562170:CDS |
| TTGTCTTCAGCTATTCGATA+TGG | 0.341107 | 4_1:+61802034 | Msa0562170:intron |
| CTCATGATTCAGTTCTTTCA+CGG | 0.364488 | 4_1:+61804825 | Msa0562170:CDS |
| TCCTTTGATTGCAGCTTTCA+GGG | 0.364620 | 4_1:+61804900 | Msa0562170:three_prime_UTR |
| TTTCCACAGGATACCATAGT+TGG | 0.389583 | 4_1:+61803322 | Msa0562170:intron |
| GAAGGGATTTCAAGAATTGC+AGG | 0.394210 | 4_1:-61804779 | None:intergenic |
| ATTTCAAGAATTGCAGGAAC+TGG | 0.410123 | 4_1:-61804773 | None:intergenic |
| GAATCATGAGCAGGATCATA+AGG | 0.423283 | 4_1:-61804812 | None:intergenic |
| AGCCAAAAGAAACCCAACTA+TGG | 0.431491 | 4_1:-61803335 | None:intergenic |
| CTTGAATGATCTGTATTGTT+TGG | 0.433385 | 4_1:+61804987 | Msa0562170:three_prime_UTR |
| ACTTACTTGAATCCACAATA+AGG | 0.438291 | 4_1:-61803396 | None:intergenic |
| CGGCGGAGCGTGACGGAGAC+GGG | 0.452843 | 4_1:-61801601 | None:intergenic |
| GATGAATTGTTGGCAGGAAT+CGG | 0.453548 | 4_1:-61802068 | None:intergenic |
| GGCAATAAGTGATGAATTGT+TGG | 0.454916 | 4_1:-61802078 | None:intergenic |
| TGCAGGTTGCAAATATGATA+AGG | 0.462958 | 4_1:+61804726 | Msa0562170:intron |
| TGACGGAGACGGGAGGAATC+CGG | 0.464286 | 4_1:-61801591 | None:intergenic |
| GGGCTAATTTATGGTTACCT+TGG | 0.465335 | 4_1:+61805045 | Msa0562170:three_prime_UTR |
| GCTTACCTCGTCAGCAATCA+TGG | 0.470639 | 4_1:-61802099 | None:intergenic |
| TCCATCTCATCTGTCGCATC+CGG | 0.474981 | 4_1:+61801626 | Msa0562170:five_prime_UTR |
| GAAGACAAATTACCTTATTG+TGG | 0.485357 | 4_1:+61803384 | Msa0562170:CDS |
| TTCCACAGGATACCATAGTT+GGG | 0.495606 | 4_1:+61803323 | Msa0562170:intron |
| TTCAATGCTGAATCAGTGGC+AGG | 0.511114 | 4_1:+61804860 | Msa0562170:CDS |
| TCATGATTCAGTTCTTTCAC+GGG | 0.514197 | 4_1:+61804826 | Msa0562170:CDS |
| CCATCTTGAAGATCTATGAC+AGG | 0.531131 | 4_1:-61805024 | None:intergenic |
| AATTGATAATATTTCATCCA+AGG | 0.534028 | 4_1:-61805062 | None:intergenic |
| ACGGCGGAGCGTGACGGAGA+CGG | 0.535709 | 4_1:-61801602 | None:intergenic |
| CATGCAATCTTCAAATCAGA+TGG | 0.539964 | 4_1:-61805127 | None:intergenic |
| GGCAGGAATCGGAACTCTGT+TGG | 0.544048 | 4_1:-61802057 | None:intergenic |
| ATAAGTGATGAATTGTTGGC+AGG | 0.546049 | 4_1:-61802074 | None:intergenic |
| AATCATGAGCAGGATCATAA+GGG | 0.560484 | 4_1:-61804811 | None:intergenic |
| ACCCTGAAAGCTGCAATCAA+AGG | 0.565789 | 4_1:-61804901 | None:intergenic |
| GAAAGAACTGAATCATGAGC+AGG | 0.572900 | 4_1:-61804821 | None:intergenic |
| ACTAGCTTTGAGAGTGCGTG+TGG | 0.574357 | 4_1:+61801545 | Msa0562170:five_prime_UTR |
| CTGTCATAGATCTTCAAGAT+GGG | 0.578380 | 4_1:+61805025 | Msa0562170:three_prime_UTR |
| TAGCAGCTCTCGAAACAGAC+CGG | 0.582567 | 4_1:+61801572 | Msa0562170:five_prime_UTR |
| TATTGCCATGATTGCTGACG+AGG | 0.587291 | 4_1:+61802094 | Msa0562170:CDS |
| ATGGAGACGGCGGAGCGTGA+CGG | 0.587931 | 4_1:-61801608 | None:intergenic |
| CCTGTCATAGATCTTCAAGA+TGG | 0.596437 | 4_1:+61805024 | Msa0562170:three_prime_UTR |
| ACCGGATGCGACAGATGAGA+TGG | 0.611335 | 4_1:-61801627 | None:intergenic |
| TCTCTTCAATGCTGAATCAG+TGG | 0.629677 | 4_1:+61804856 | Msa0562170:CDS |
| TGCGACAGATGAGATGGAGA+CGG | 0.641361 | 4_1:-61801621 | None:intergenic |
| AACGACTGTCAAACAAATCG+AGG | 0.646091 | 4_1:+61804024 | Msa0562170:CDS |
| CAAAGAATTCTCAACACGGG+AGG | 0.652854 | 4_1:+61804054 | Msa0562170:CDS |
| CGGAGCGTGACGGAGACGGG+AGG | 0.660477 | 4_1:-61801598 | None:intergenic |
| CTAGCTTTGAGAGTGCGTGT+GGG | 0.662661 | 4_1:+61801546 | Msa0562170:five_prime_UTR |
| ATTCAAAGAATTCTCAACAC+GGG | 0.675761 | 4_1:+61804051 | Msa0562170:CDS |
| CATTCAAAGAATTCTCAACA+CGG | 0.678390 | 4_1:+61804050 | Msa0562170:CDS |
| CATGAGCAGGATCATAAGGG+TGG | 0.700765 | 4_1:-61804808 | None:intergenic |
| GACAGATGAGATGGAGACGG+CGG | 0.703991 | 4_1:-61801618 | None:intergenic |
| TGGGAAACGTTGACATACGT+CGG | 0.705364 | 4_1:+61803362 | Msa0562170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTAAAAAATTTACAAGT+TGG | - | chr4_1:61801681-61801700 | None:intergenic | 15.0% |
| !! | TTAATAAAAAAAGAAATCAG+TGG | - | chr4_1:61802542-61802561 | None:intergenic | 15.0% |
| !! | ACTAGTTATTCAAATTAATA+GGG | - | chr4_1:61803153-61803172 | None:intergenic | 15.0% |
| !! | ACAAAAAAAAAAATCCAAAA+TGG | - | chr4_1:61803241-61803260 | None:intergenic | 15.0% |
| !!! | TGGATTTTTTTTTTTGTAAT+TGG | + | chr4_1:61803244-61803263 | Msa0562170:intron | 15.0% |
| !! | TTTACTTACTATTATTTATG+AGG | + | chr4_1:61803432-61803451 | Msa0562170:intron | 15.0% |
| !! | TTACTTACTATTATTTATGA+GGG | + | chr4_1:61803433-61803452 | Msa0562170:intron | 15.0% |
| !! | TATGAAATGTATTAAAGATA+AGG | - | chr4_1:61803693-61803712 | None:intergenic | 15.0% |
| !!! | AATTGATTCATAGTAATCAA+GGG | + | chr4_1:61801973-61801992 | Msa0562170:intron | 20.0% |
| !!! | TAAGAAAGTATATACAACAT+GGG | - | chr4_1:61802130-61802149 | None:intergenic | 20.0% |
| !!! | ATAAGAAAGTATATACAACA+TGG | - | chr4_1:61802131-61802150 | None:intergenic | 20.0% |
| !!! | TTAAAGATCTATTTTGCTAT+TGG | + | chr4_1:61802279-61802298 | Msa0562170:intron | 20.0% |
| !!! | TTTTTGCTAGAATCTATTTA+AGG | - | chr4_1:61802574-61802593 | None:intergenic | 20.0% |
| !! | TAACAGGATTTAAATGAAAT+AGG | + | chr4_1:61802595-61802614 | Msa0562170:intron | 20.0% |
| !!! | AAATTTAATTTCTTTGGATG+AGG | - | chr4_1:61802636-61802655 | None:intergenic | 20.0% |
| !!! | AGAGACAAATTTAATTTCTT+TGG | - | chr4_1:61802642-61802661 | None:intergenic | 20.0% |
| !! | AAATACCAGCTTATATAATA+TGG | - | chr4_1:61802768-61802787 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTCCTTATTTCA+GGG | - | chr4_1:61802920-61802939 | None:intergenic | 20.0% |
| !! | CTAGTTATTCAAATTAATAG+GGG | - | chr4_1:61803152-61803171 | None:intergenic | 20.0% |
| !! | CACTAGTTATTCAAATTAAT+AGG | - | chr4_1:61803154-61803173 | None:intergenic | 20.0% |
| !! | AAAAAATCCAAAATGGAATT+GGG | - | chr4_1:61803234-61803253 | None:intergenic | 20.0% |
| !! | AAAAAAATCCAAAATGGAAT+TGG | - | chr4_1:61803235-61803254 | None:intergenic | 20.0% |
| !!! | AATTCAATTTTATTTTCCAC+AGG | + | chr4_1:61803309-61803328 | Msa0562170:intron | 20.0% |
| !! | TTAACAGGAAAAAATTGTAT+GGG | - | chr4_1:61803472-61803491 | None:intergenic | 20.0% |
| !! | ATTAACAGGAAAAAATTGTA+TGG | - | chr4_1:61803473-61803492 | None:intergenic | 20.0% |
| !!! | AACACATGTACTATTTTTAT+TGG | - | chr4_1:61803561-61803580 | None:intergenic | 20.0% |
| !!! | TTCAAAACAAATTGATTTGA+CGG | + | chr4_1:61803964-61803983 | Msa0562170:intron | 20.0% |
| !! | ATGAAATATGACTTACAAAT+TGG | - | chr4_1:61804102-61804121 | None:intergenic | 20.0% |
| !! | AATTTGTAAGTCATATTTCA+TGG | + | chr4_1:61804101-61804120 | Msa0562170:intron | 20.0% |
| !!! | AAAATGTTGACTAGTTTATA+TGG | + | chr4_1:61804510-61804529 | Msa0562170:intron | 20.0% |
| !!! | TTGTTTTTCTTTGTACATTA+TGG | + | chr4_1:61804929-61804948 | Msa0562170:three_prime_UTR | 20.0% |
| !!! | AATTGATAATATTTCATCCA+AGG | - | chr4_1:61805065-61805084 | None:intergenic | 20.0% |
| ! | AATGAATTACGTGTTGAAAA+TGG | - | chr4_1:61801753-61801772 | None:intergenic | 25.0% |
| !!! | ACCTTTTTTTTTTCTCGATT+TGG | + | chr4_1:61801852-61801871 | Msa0562170:intron | 25.0% |
| ! | TCCAAATCGAGAAAAAAAAA+AGG | - | chr4_1:61801856-61801875 | None:intergenic | 25.0% |
| !! | GAATTGATTCATAGTAATCA+AGG | + | chr4_1:61801972-61801991 | Msa0562170:intron | 25.0% |
| ! | AATCAGATGATATGATAACT+TGG | + | chr4_1:61802179-61802198 | Msa0562170:intron | 25.0% |
| !! | ACTATTATTGTACATTTTCC+TGG | + | chr4_1:61802346-61802365 | Msa0562170:intron | 25.0% |
| ! | AGATTCTAGCAAAAATTAAC+AGG | + | chr4_1:61802579-61802598 | Msa0562170:intron | 25.0% |
| ! | AAATGAAATAGGAAATTGTG+AGG | + | chr4_1:61802606-61802625 | Msa0562170:intron | 25.0% |
| ! | TCTCTGATAAAATTGAAGAA+AGG | + | chr4_1:61802657-61802676 | Msa0562170:intron | 25.0% |
| ! | CTCTGATAAAATTGAAGAAA+GGG | + | chr4_1:61802658-61802677 | Msa0562170:intron | 25.0% |
| ! | TACTTCCATATTATATAAGC+TGG | + | chr4_1:61802760-61802779 | Msa0562170:intron | 25.0% |
| ! | ATACTCCTATTTCATTAACA+AGG | - | chr4_1:61802809-61802828 | None:intergenic | 25.0% |
| !! | TAGATTTGACTTAGAGTAAT+TGG | - | chr4_1:61802874-61802893 | None:intergenic | 25.0% |
| ! | TAGCCAATTACTAGTATAAA+CGG | + | chr4_1:61802892-61802911 | Msa0562170:intron | 25.0% |
| !!! | GTGTTTTATTTCCTTATTTC+AGG | - | chr4_1:61802921-61802940 | None:intergenic | 25.0% |
| ! | AAAATCAGATATAGTTCAGT+CGG | + | chr4_1:61803106-61803125 | Msa0562170:intron | 25.0% |
| ! | AATCAGAAAATTAGGTGAAA+AGG | - | chr4_1:61803527-61803546 | None:intergenic | 25.0% |
| ! | TGTATTAAAGATAAGGTTTG+TGG | - | chr4_1:61803686-61803705 | None:intergenic | 25.0% |
| !! | AAACCGTAGAATACTTATTT+TGG | + | chr4_1:61803732-61803751 | Msa0562170:intron | 25.0% |
| !!! | AACCGTAGAATACTTATTTT+GGG | + | chr4_1:61803733-61803752 | Msa0562170:intron | 25.0% |
| ! | TTTATGCAAAGGTTATTAGT+AGG | + | chr4_1:61803769-61803788 | Msa0562170:intron | 25.0% |
| !! | AGGATAAGTAAAAAGTCTTT+TGG | - | chr4_1:61804237-61804256 | None:intergenic | 25.0% |
| ! | AACATGTGTTAAACTATGAT+AGG | - | chr4_1:61804262-61804281 | None:intergenic | 25.0% |
| !!! | TTTTAATTATCTACTGCATC+AGG | + | chr4_1:61804328-61804347 | Msa0562170:intron | 25.0% |
| ! | AATGAATAATGCTAGATAAC+TGG | + | chr4_1:61804372-61804391 | Msa0562170:intron | 25.0% |
| !! | ATTTTATGATTGAATCTCAC+TGG | - | chr4_1:61804429-61804448 | None:intergenic | 25.0% |
| ! | GTGAGATTCAATCATAAAAT+TGG | + | chr4_1:61804429-61804448 | Msa0562170:intron | 25.0% |
| ! | TCAGTTATTAGTTGGATATT+TGG | + | chr4_1:61804555-61804574 | Msa0562170:intron | 25.0% |
| !! | TGAAATAGTTTTTAAATCCC+AGG | - | chr4_1:61804620-61804639 | None:intergenic | 25.0% |
| ! | TAAATAACCCAAGATTGTAA+AGG | - | chr4_1:61804684-61804703 | None:intergenic | 25.0% |
| !! | TGCAAATATGATAAGGTTTT+TGG | + | chr4_1:61804733-61804752 | Msa0562170:CDS | 25.0% |
| ATTGAAAACAGAATGCGAAT+TGG | - | chr4_1:61801809-61801828 | None:intergenic | 30.0% | |
| CAACTTGAAAGCTTAACAAT+AGG | - | chr4_1:61801947-61801966 | None:intergenic | 30.0% | |
| ! | TATTAGCTACGATGATTTTG+CGG | - | chr4_1:61802228-61802247 | None:intergenic | 30.0% |
| TCTTGAAAGGATCAAATTCA+GGG | + | chr4_1:61802416-61802435 | Msa0562170:intron | 30.0% | |
| TTCAGGGTTTAGAAAATAAG+TGG | + | chr4_1:61802432-61802451 | Msa0562170:intron | 30.0% | |
| TAGAAAATAAGTGGATGGAT+AGG | + | chr4_1:61802441-61802460 | Msa0562170:intron | 30.0% | |
| TGACTTCTTAAGTCATCTTA+TGG | - | chr4_1:61802489-61802508 | None:intergenic | 30.0% | |
| AAAAAGAAATCAGTGGCTTT+AGG | - | chr4_1:61802535-61802554 | None:intergenic | 30.0% | |
| ! | GATTGCCTTGTTAATGAAAT+AGG | + | chr4_1:61802801-61802820 | Msa0562170:intron | 30.0% |
| GTTCCGTTTATACTAGTAAT+TGG | - | chr4_1:61802898-61802917 | None:intergenic | 30.0% | |
| !!! | ATTGTATGGATTTTGGCTTT+GGG | - | chr4_1:61802951-61802970 | None:intergenic | 30.0% |
| ! | AACTGTCATTGTATGGATTT+TGG | - | chr4_1:61802958-61802977 | None:intergenic | 30.0% |
| AAAATCCATACAATGACAGT+TGG | + | chr4_1:61802957-61802976 | Msa0562170:intron | 30.0% | |
| ! | ACTTTCAATTTTCAGCCATA+GGG | - | chr4_1:61803050-61803069 | None:intergenic | 30.0% |
| ! | TACTTTCAATTTTCAGCCAT+AGG | - | chr4_1:61803051-61803070 | None:intergenic | 30.0% |
| ATGGAATTGGGAAATGATAT+GGG | - | chr4_1:61803222-61803241 | None:intergenic | 30.0% | |
| AATGGAATTGGGAAATGATA+TGG | - | chr4_1:61803223-61803242 | None:intergenic | 30.0% | |
| ! | ATCATTTCCCAATTCCATTT+TGG | + | chr4_1:61803224-61803243 | Msa0562170:intron | 30.0% |
| GAAGACAAATTACCTTATTG+TGG | + | chr4_1:61803384-61803403 | Msa0562170:CDS | 30.0% | |
| ACTTACTTGAATCCACAATA+AGG | - | chr4_1:61803399-61803418 | None:intergenic | 30.0% | |
| ! | TTCACCTAATTTTCTGATTG+TGG | + | chr4_1:61803528-61803547 | Msa0562170:intron | 30.0% |
| TCTACCACAATCAGAAAATT+AGG | - | chr4_1:61803535-61803554 | None:intergenic | 30.0% | |
| AGACTTATTGTTGTATATCG+TGG | + | chr4_1:61803597-61803616 | Msa0562170:intron | 30.0% | |
| CATTTCTACACATCCTATAT+AGG | - | chr4_1:61803654-61803673 | None:intergenic | 30.0% | |
| ! | AAGTATTCTACGGTTTTTCT+GGG | - | chr4_1:61803728-61803747 | None:intergenic | 30.0% |
| ! | TAAGTATTCTACGGTTTTTC+TGG | - | chr4_1:61803729-61803748 | None:intergenic | 30.0% |
| TGCCCAAAATAAGTATTCTA+CGG | - | chr4_1:61803738-61803757 | None:intergenic | 30.0% | |
| !!! | TAGAATACTTATTTTGGGCA+TGG | + | chr4_1:61803738-61803757 | Msa0562170:intron | 30.0% |
| !!! | AGAATACTTATTTTGGGCAT+GGG | + | chr4_1:61803739-61803758 | Msa0562170:intron | 30.0% |
| !!! | TGGGCTATTTTTTTATGCAA+AGG | + | chr4_1:61803758-61803777 | Msa0562170:intron | 30.0% |
| TTAATTGGTACTTGAACCTT+GGG | + | chr4_1:61803808-61803827 | Msa0562170:intron | 30.0% | |
| !! | TCAAGTTCTGAAAATATTCC+TGG | + | chr4_1:61803925-61803944 | Msa0562170:intron | 30.0% |
| CATTCAAAGAATTCTCAACA+CGG | + | chr4_1:61804050-61804069 | Msa0562170:CDS | 30.0% | |
| ATTCAAAGAATTCTCAACAC+GGG | + | chr4_1:61804051-61804070 | Msa0562170:CDS | 30.0% | |
| !! | AACAGCCTGAATCATTTTTA+TGG | - | chr4_1:61804127-61804146 | None:intergenic | 30.0% |
| GTGTTAAACTATGATAGGTA+AGG | - | chr4_1:61804257-61804276 | None:intergenic | 30.0% | |
| AGTTTAACACATGTTCTGTT+TGG | + | chr4_1:61804267-61804286 | Msa0562170:intron | 30.0% | |
| ! | CATTAACCTCATGTAAGTTT+TGG | - | chr4_1:61804356-61804375 | None:intergenic | 30.0% |
| !! | TGACTAGTTTATATGGTCAT+TGG | + | chr4_1:61804517-61804536 | Msa0562170:intron | 30.0% |
| ! | ATAGTTTTTAAATCCCAGGT+AGG | - | chr4_1:61804616-61804635 | None:intergenic | 30.0% |
| TAAAAACTATTTCATGCACC+CGG | + | chr4_1:61804626-61804645 | Msa0562170:intron | 30.0% | |
| ! | AAGGTTTTCTAAATAGGAAC+CGG | - | chr4_1:61804648-61804667 | None:intergenic | 30.0% |
| ! | AGCAAGAAGGTTTTCTAAAT+AGG | - | chr4_1:61804654-61804673 | None:intergenic | 30.0% |
| TATAATTTCTTTGACTGTGC+AGG | + | chr4_1:61804709-61804728 | Msa0562170:intron | 30.0% | |
| CTTGAATGATCTGTATTGTT+TGG | + | chr4_1:61804987-61805006 | Msa0562170:three_prime_UTR | 30.0% | |
| ! | ATTTACAAGTTGGAGAGCAA+AGG | - | chr4_1:61801671-61801690 | None:intergenic | 35.0% |
| GCGAATTGGAACAATTTGAT+CGG | - | chr4_1:61801795-61801814 | None:intergenic | 35.0% | |
| TTGTCTTCAGCTATTCGATA+TGG | + | chr4_1:61802034-61802053 | Msa0562170:intron | 35.0% | |
| ATAAGTGATGAATTGTTGGC+AGG | - | chr4_1:61802077-61802096 | None:intergenic | 35.0% | |
| GGCAATAAGTGATGAATTGT+TGG | - | chr4_1:61802081-61802100 | None:intergenic | 35.0% | |
| ACTTGGATGCATGTTTGAAT+AGG | + | chr4_1:61802196-61802215 | Msa0562170:intron | 35.0% | |
| CTTGGATGCATGTTTGAATA+GGG | + | chr4_1:61802197-61802216 | Msa0562170:intron | 35.0% | |
| !! | TTTTCTTAAGAAGTGTGCAG+TGG | - | chr4_1:61802323-61802342 | None:intergenic | 35.0% |
| ! | TATTGTACATTTTCCTGGTG+TGG | + | chr4_1:61802351-61802370 | Msa0562170:intron | 35.0% |
| GGGTTTAATAGGTTAGGTTT+AGG | + | chr4_1:61802390-61802409 | Msa0562170:intron | 35.0% | |
| ! | TAGGTTTAGGTTCTCTTGAA+AGG | + | chr4_1:61802403-61802422 | Msa0562170:intron | 35.0% |
| CTCTTGAAAGGATCAAATTC+AGG | + | chr4_1:61802415-61802434 | Msa0562170:intron | 35.0% | |
| GGGTTTAGAAAATAAGTGGA+TGG | + | chr4_1:61802436-61802455 | Msa0562170:intron | 35.0% | |
| GAAAGGGATTTAGAGATCAT+AGG | + | chr4_1:61802674-61802693 | Msa0562170:intron | 35.0% | |
| ATAAACGGAACCCTGAAATA+AGG | + | chr4_1:61802907-61802926 | Msa0562170:intron | 35.0% | |
| !!! | TTGTATGGATTTTGGCTTTG+GGG | - | chr4_1:61802950-61802969 | None:intergenic | 35.0% |
| !!! | CATTGTATGGATTTTGGCTT+TGG | - | chr4_1:61802952-61802971 | None:intergenic | 35.0% |
| ! | TACCATAGTTGGGTTTCTTT+TGG | + | chr4_1:61803333-61803352 | Msa0562170:CDS | 35.0% |
| AACATGATGCACAGATTAAC+AGG | - | chr4_1:61803487-61803506 | None:intergenic | 35.0% | |
| GAAAATTAGGTGAAAAGGCA+GGG | - | chr4_1:61803522-61803541 | None:intergenic | 35.0% | |
| AGAAAATTAGGTGAAAAGGC+AGG | - | chr4_1:61803523-61803542 | None:intergenic | 35.0% | |
| ! | AGTATTCTACGGTTTTTCTG+GGG | - | chr4_1:61803727-61803746 | None:intergenic | 35.0% |
| GTTAATTGGTACTTGAACCT+TGG | + | chr4_1:61803807-61803826 | Msa0562170:intron | 35.0% | |
| AAACTGAGCAAGAAATTACC+AGG | - | chr4_1:61803946-61803965 | None:intergenic | 35.0% | |
| CATGGCCATAAAAATGATTC+AGG | + | chr4_1:61804119-61804138 | Msa0562170:intron | 35.0% | |
| ATGTAATAAGCTGATGTCTC+AGG | - | chr4_1:61804214-61804233 | None:intergenic | 35.0% | |
| TGGCAATCAACACTATTGTT+AGG | + | chr4_1:61804287-61804306 | Msa0562170:intron | 35.0% | |
| GGCAATCAACACTATTGTTA+GGG | + | chr4_1:61804288-61804307 | Msa0562170:intron | 35.0% | |
| CACTATTGTTAGGGAAAATC+TGG | + | chr4_1:61804297-61804316 | Msa0562170:intron | 35.0% | |
| TATTGTTAGGGAAAATCTGG+AGG | + | chr4_1:61804300-61804319 | Msa0562170:intron | 35.0% | |
| ATTGTTAGGGAAAATCTGGA+GGG | + | chr4_1:61804301-61804320 | Msa0562170:intron | 35.0% | |
| TTGTCGACATTTAAACCCAA+AGG | - | chr4_1:61804474-61804493 | None:intergenic | 35.0% | |
| CTGTTGGATCAGTTATTAGT+TGG | + | chr4_1:61804547-61804566 | Msa0562170:intron | 35.0% | |
| ! | AGGTTTTCTAAATAGGAACC+GGG | - | chr4_1:61804647-61804666 | None:intergenic | 35.0% |
| AGAAAACCTTCTTGCTTATG+TGG | + | chr4_1:61804658-61804677 | Msa0562170:intron | 35.0% | |
| TTATGTGGCCTTTACAATCT+TGG | + | chr4_1:61804673-61804692 | Msa0562170:intron | 35.0% | |
| TATGTGGCCTTTACAATCTT+GGG | + | chr4_1:61804674-61804693 | Msa0562170:intron | 35.0% | |
| TGCAGGTTGCAAATATGATA+AGG | + | chr4_1:61804726-61804745 | Msa0562170:intron | 35.0% | |
| ATTTCAAGAATTGCAGGAAC+TGG | - | chr4_1:61804776-61804795 | None:intergenic | 35.0% | |
| AATCATGAGCAGGATCATAA+GGG | - | chr4_1:61804814-61804833 | None:intergenic | 35.0% | |
| CTCATGATTCAGTTCTTTCA+CGG | + | chr4_1:61804825-61804844 | Msa0562170:CDS | 35.0% | |
| TCATGATTCAGTTCTTTCAC+GGG | + | chr4_1:61804826-61804845 | Msa0562170:CDS | 35.0% | |
| CTGTCATAGATCTTCAAGAT+GGG | + | chr4_1:61805025-61805044 | Msa0562170:three_prime_UTR | 35.0% | |
| !! | CTTCAAGATGGGCTAATTTA+TGG | + | chr4_1:61805036-61805055 | Msa0562170:three_prime_UTR | 35.0% |
| CATGCAATCTTCAAATCAGA+TGG | - | chr4_1:61805130-61805149 | None:intergenic | 35.0% | |
| AAAGGATGAATAGAACGCAC+CGG | - | chr4_1:61801648-61801667 | None:intergenic | 40.0% | |
| ! | AGTTCTTTTGATGCTCACAC+TGG | + | chr4_1:61801701-61801720 | Msa0562170:intron | 40.0% |
| CTAATGACAGATCTTACTCG+CGG | - | chr4_1:61801883-61801902 | None:intergenic | 40.0% | |
| GATGAATTGTTGGCAGGAAT+CGG | - | chr4_1:61802071-61802090 | None:intergenic | 40.0% | |
| TAGAAGGCTTGGGGTTTAAT+AGG | + | chr4_1:61802379-61802398 | Msa0562170:intron | 40.0% | |
| GATTGCATCACACATAGTCA+AGG | + | chr4_1:61802727-61802746 | Msa0562170:intron | 40.0% | |
| ACTGCTTGGTACAAATCACA+GGG | - | chr4_1:61802837-61802856 | None:intergenic | 40.0% | |
| AGTAATTGGACCTGCAGTTT+CGG | - | chr4_1:61802860-61802879 | None:intergenic | 40.0% | |
| !!! | TGTATGGATTTTGGCTTTGG+GGG | - | chr4_1:61802949-61802968 | None:intergenic | 40.0% |
| ACACTCCAACTGTCATTGTA+TGG | - | chr4_1:61802965-61802984 | None:intergenic | 40.0% | |
| TACAATGACAGTTGGAGTGT+TGG | + | chr4_1:61802965-61802984 | Msa0562170:intron | 40.0% | |
| ACCGCACTAAAATATCCCTA+TGG | + | chr4_1:61803032-61803051 | Msa0562170:intron | 40.0% | |
| !!! | GCCATAGGGATATTTTAGTG+CGG | - | chr4_1:61803036-61803055 | None:intergenic | 40.0% |
| CGGCAATTGAACATTACAAC+TGG | + | chr4_1:61803126-61803145 | Msa0562170:intron | 40.0% | |
| TTTCCACAGGATACCATAGT+TGG | + | chr4_1:61803322-61803341 | Msa0562170:intron | 40.0% | |
| TTCCACAGGATACCATAGTT+GGG | + | chr4_1:61803323-61803342 | Msa0562170:intron | 40.0% | |
| AGCCAAAAGAAACCCAACTA+TGG | - | chr4_1:61803338-61803357 | None:intergenic | 40.0% | |
| ! | ATAGTTGGGTTTCTTTTGGC+TGG | + | chr4_1:61803337-61803356 | Msa0562170:CDS | 40.0% |
| ATCTGTGCATCATGTTCATG+TGG | + | chr4_1:61803491-61803510 | Msa0562170:intron | 40.0% | |
| TGGACCTCGTAAATAAGCAT+GGG | + | chr4_1:61803617-61803636 | Msa0562170:intron | 40.0% | |
| TATCCCCATGCTTATTTACG+AGG | - | chr4_1:61803624-61803643 | None:intergenic | 40.0% | |
| GGGATATGTCTCTCCTATAT+AGG | + | chr4_1:61803638-61803657 | Msa0562170:intron | 40.0% | |
| AAGGTTATTAGTAGGTACCC+TGG | + | chr4_1:61803777-61803796 | Msa0562170:intron | 40.0% | |
| ACCAATTAACCTCAGTTCCA+GGG | - | chr4_1:61803797-61803816 | None:intergenic | 40.0% | |
| TACCAATTAACCTCAGTTCC+AGG | - | chr4_1:61803798-61803817 | None:intergenic | 40.0% | |
| AGTAATCCAAGTACTACCCA+AGG | - | chr4_1:61803827-61803846 | None:intergenic | 40.0% | |
| AACGACTGTCAAACAAATCG+AGG | + | chr4_1:61804024-61804043 | Msa0562170:CDS | 40.0% | |
| TAGGAAGTAGGAACTAACAG+TGG | - | chr4_1:61804188-61804207 | None:intergenic | 40.0% | |
| CTGTTAGTTCCTACTTCCTA+CGG | + | chr4_1:61804188-61804207 | Msa0562170:intron | 40.0% | |
| CAGGTTCCAAAACTTACATG+AGG | + | chr4_1:61804347-61804366 | Msa0562170:intron | 40.0% | |
| TTCTTTCGATAGCCATCCTT+TGG | + | chr4_1:61804455-61804474 | Msa0562170:intron | 40.0% | |
| TCTTTCGATAGCCATCCTTT+GGG | + | chr4_1:61804456-61804475 | Msa0562170:intron | 40.0% | |
| CGACATTTAAACCCAAAGGA+TGG | - | chr4_1:61804470-61804489 | None:intergenic | 40.0% | |
| CAATGGCTGATTGAGCTAAA+AGG | - | chr4_1:61804587-61804606 | None:intergenic | 40.0% | |
| TAAAGGCCACATAAGCAAGA+AGG | - | chr4_1:61804667-61804686 | None:intergenic | 40.0% | |
| GAAGGGATTTCAAGAATTGC+AGG | - | chr4_1:61804782-61804801 | None:intergenic | 40.0% | |
| ! | CATAAGGGTGGTCTTTTGAA+GGG | - | chr4_1:61804799-61804818 | None:intergenic | 40.0% |
| ! | TCATAAGGGTGGTCTTTTGA+AGG | - | chr4_1:61804800-61804819 | None:intergenic | 40.0% |
| GAATCATGAGCAGGATCATA+AGG | - | chr4_1:61804815-61804834 | None:intergenic | 40.0% | |
| GAAAGAACTGAATCATGAGC+AGG | - | chr4_1:61804824-61804843 | None:intergenic | 40.0% | |
| TCTCTTCAATGCTGAATCAG+TGG | + | chr4_1:61804856-61804875 | Msa0562170:CDS | 40.0% | |
| ATCCTTTGATTGCAGCTTTC+AGG | + | chr4_1:61804899-61804918 | Msa0562170:three_prime_UTR | 40.0% | |
| TCCTTTGATTGCAGCTTTCA+GGG | + | chr4_1:61804900-61804919 | Msa0562170:three_prime_UTR | 40.0% | |
| CCATCTTGAAGATCTATGAC+AGG | - | chr4_1:61805027-61805046 | None:intergenic | 40.0% | |
| CCTGTCATAGATCTTCAAGA+TGG | + | chr4_1:61805024-61805043 | Msa0562170:three_prime_UTR | 40.0% | |
| GGGCTAATTTATGGTTACCT+TGG | + | chr4_1:61805045-61805064 | Msa0562170:three_prime_UTR | 40.0% | |
| ! | CAAGTTGGAGAGCAAAGGAA+AGG | - | chr4_1:61801666-61801685 | None:intergenic | 45.0% |
| TATTGCCATGATTGCTGACG+AGG | + | chr4_1:61802094-61802113 | Msa0562170:CDS | 45.0% | |
| ! | TGTGGAGTACTAGAAGGCTT+GGG | + | chr4_1:61802369-61802388 | Msa0562170:intron | 45.0% |
| GGCTTGGGGTTTAATAGGTT+AGG | + | chr4_1:61802384-61802403 | Msa0562170:intron | 45.0% | |
| ATGGATAGGTTCTCGAGGAA+GGG | + | chr4_1:61802455-61802474 | Msa0562170:intron | 45.0% | |
| TGCATCACACATAGTCAAGG+AGG | + | chr4_1:61802730-61802749 | Msa0562170:intron | 45.0% | |
| GACTGCTTGGTACAAATCAC+AGG | - | chr4_1:61802838-61802857 | None:intergenic | 45.0% | |
| !!! | TATTTTAGTGCGGTGCTGCT+AGG | - | chr4_1:61803026-61803045 | None:intergenic | 45.0% |
| AACCCAACTATGGTATCCTG+TGG | - | chr4_1:61803328-61803347 | None:intergenic | 45.0% | |
| TGGGAAACGTTGACATACGT+CGG | + | chr4_1:61803362-61803381 | Msa0562170:CDS | 45.0% | |
| GTGGACCTCGTAAATAAGCA+TGG | + | chr4_1:61803616-61803635 | Msa0562170:intron | 45.0% | |
| GGACCTCGTAAATAAGCATG+GGG | + | chr4_1:61803618-61803637 | Msa0562170:intron | 45.0% | |
| ACCCTGGAACTGAGGTTAAT+TGG | + | chr4_1:61803793-61803812 | Msa0562170:intron | 45.0% | |
| CTTGAACCTTGGGTAGTACT+TGG | + | chr4_1:61803818-61803837 | Msa0562170:intron | 45.0% | |
| CAAAGAATTCTCAACACGGG+AGG | + | chr4_1:61804054-61804073 | Msa0562170:CDS | 45.0% | |
| AAGTAGGAACTAACAGTGGC+AGG | - | chr4_1:61804184-61804203 | None:intergenic | 45.0% | |
| TCTCACTGGTACTGTCACAT+TGG | - | chr4_1:61804415-61804434 | None:intergenic | 45.0% | |
| !! | GGTCATTGGTTTCTCACTGT+TGG | + | chr4_1:61804531-61804550 | Msa0562170:intron | 45.0% |
| GGCTGATTGAGCTAAAAGGA+CGG | - | chr4_1:61804583-61804602 | None:intergenic | 45.0% | |
| AGCCATTGTGATATCCTACC+TGG | + | chr4_1:61804599-61804618 | Msa0562170:intron | 45.0% | |
| GCCATTGTGATATCCTACCT+GGG | + | chr4_1:61804600-61804619 | Msa0562170:intron | 45.0% | |
| TCCCAGGTAGGATATCACAA+TGG | - | chr4_1:61804604-61804623 | None:intergenic | 45.0% | |
| TTCAATGCTGAATCAGTGGC+AGG | + | chr4_1:61804860-61804879 | Msa0562170:CDS | 45.0% | |
| ACCCTGAAAGCTGCAATCAA+AGG | - | chr4_1:61804904-61804923 | None:intergenic | 45.0% | |
| !! | ACTAGCTTTGAGAGTGCGTG+TGG | + | chr4_1:61801545-61801564 | Msa0562170:five_prime_UTR | 50.0% |
| !! | CTAGCTTTGAGAGTGCGTGT+GGG | + | chr4_1:61801546-61801565 | Msa0562170:five_prime_UTR | 50.0% |
| TAGCAGCTCTCGAAACAGAC+CGG | + | chr4_1:61801572-61801591 | Msa0562170:five_prime_UTR | 50.0% | |
| TGCGACAGATGAGATGGAGA+CGG | - | chr4_1:61801624-61801643 | None:intergenic | 50.0% | |
| TCCATCTCATCTGTCGCATC+CGG | + | chr4_1:61801626-61801645 | Msa0562170:five_prime_UTR | 50.0% | |
| GCTTACCTCGTCAGCAATCA+TGG | - | chr4_1:61802102-61802121 | None:intergenic | 50.0% | |
| ! | TCCTGGTGTGGAGTACTAGA+AGG | + | chr4_1:61802363-61802382 | Msa0562170:intron | 50.0% |
| ! | GTGTGGAGTACTAGAAGGCT+TGG | + | chr4_1:61802368-61802387 | Msa0562170:intron | 50.0% |
| ! | GTGGAGTACTAGAAGGCTTG+GGG | + | chr4_1:61802370-61802389 | Msa0562170:intron | 50.0% |
| AGTGGATGGATAGGTTCTCG+AGG | + | chr4_1:61802450-61802469 | Msa0562170:intron | 50.0% | |
| GATGGATAGGTTCTCGAGGA+AGG | + | chr4_1:61802454-61802473 | Msa0562170:intron | 50.0% | |
| !! | TGGGTTTCTTTTGGCTGGAG+TGG | + | chr4_1:61803342-61803361 | Msa0562170:CDS | 50.0% |
| !! | GGGTTTCTTTTGGCTGGAGT+GGG | + | chr4_1:61803343-61803362 | Msa0562170:CDS | 50.0% |
| TAGTAGGTACCCTGGAACTG+AGG | + | chr4_1:61803785-61803804 | Msa0562170:intron | 50.0% | |
| CATGAGCAGGATCATAAGGG+TGG | - | chr4_1:61804811-61804830 | None:intergenic | 50.0% | |
| GACAGATGAGATGGAGACGG+CGG | - | chr4_1:61801621-61801640 | None:intergenic | 55.0% | |
| ACCGGATGCGACAGATGAGA+TGG | - | chr4_1:61801630-61801649 | None:intergenic | 55.0% | |
| GGCAGGAATCGGAACTCTGT+TGG | - | chr4_1:61802060-61802079 | None:intergenic | 55.0% | |
| GCCTTCTAGTACTCCACACC+AGG | - | chr4_1:61802367-61802386 | None:intergenic | 55.0% | |
| ACCAAGCAGTCCGAAACTGC+AGG | + | chr4_1:61802847-61802866 | Msa0562170:intron | 55.0% | |
| ACCTGCAGTTTCGGACTGCT+TGG | - | chr4_1:61802851-61802870 | None:intergenic | 55.0% | |
| TGTCTCAGGCCGTAGGAAGT+AGG | - | chr4_1:61804200-61804219 | None:intergenic | 55.0% | |
| AAGCTGATGTCTCAGGCCGT+AGG | - | chr4_1:61804207-61804226 | None:intergenic | 55.0% | |
| TGACGGAGACGGGAGGAATC+CGG | - | chr4_1:61801594-61801613 | None:intergenic | 60.0% | |
| ATGGAGACGGCGGAGCGTGA+CGG | - | chr4_1:61801611-61801630 | None:intergenic | 65.0% | |
| ! | ACGGCGGAGCGTGACGGAGA+CGG | - | chr4_1:61801605-61801624 | None:intergenic | 70.0% |
| ! | CGGAGCGTGACGGAGACGGG+AGG | - | chr4_1:61801601-61801620 | None:intergenic | 75.0% |
| ! | CGGCGGAGCGTGACGGAGAC+GGG | - | chr4_1:61801604-61801623 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61801509 | 61805156 | 61801509 | ID=Msa0562170;Name=Msa0562170 |
| chr4_1 | mRNA | 61801509 | 61805156 | 61801509 | ID=Msa0562170-mRNA-1;Parent=Msa0562170;Name=Msa0562170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|1|1|5|261|130 |
| chr4_1 | exon | 61801509 | 61801647 | 61801509 | ID=Msa0562170-mRNA-1:exon:19500;Parent=Msa0562170-mRNA-1 |
| chr4_1 | exon | 61802044 | 61802115 | 61802044 | ID=Msa0562170-mRNA-1:exon:19501;Parent=Msa0562170-mRNA-1 |
| chr4_1 | exon | 61803331 | 61803412 | 61803331 | ID=Msa0562170-mRNA-1:exon:19502;Parent=Msa0562170-mRNA-1 |
| chr4_1 | exon | 61804023 | 61804105 | 61804023 | ID=Msa0562170-mRNA-1:exon:19503;Parent=Msa0562170-mRNA-1 |
| chr4_1 | exon | 61804731 | 61805156 | 61804731 | ID=Msa0562170-mRNA-1:exon:19504;Parent=Msa0562170-mRNA-1 |
| chr4_1 | five_prime_UTR | 61801509 | 61801647 | 61801509 | ID=Msa0562170-mRNA-1:five_prime_utr;Parent=Msa0562170-mRNA-1 |
| chr4_1 | five_prime_UTR | 61802044 | 61802052 | 61802044 | ID=Msa0562170-mRNA-1:five_prime_utr;Parent=Msa0562170-mRNA-1 |
| chr4_1 | CDS | 61802053 | 61802115 | 61802053 | ID=Msa0562170-mRNA-1:cds;Parent=Msa0562170-mRNA-1 |
| chr4_1 | CDS | 61803331 | 61803412 | 61803331 | ID=Msa0562170-mRNA-1:cds;Parent=Msa0562170-mRNA-1 |
| chr4_1 | CDS | 61804023 | 61804105 | 61804023 | ID=Msa0562170-mRNA-1:cds;Parent=Msa0562170-mRNA-1 |
| chr4_1 | CDS | 61804731 | 61804895 | 61804731 | ID=Msa0562170-mRNA-1:cds;Parent=Msa0562170-mRNA-1 |
| chr4_1 | three_prime_UTR | 61804896 | 61805156 | 61804896 | ID=Msa0562170-mRNA-1:three_prime_utr;Parent=Msa0562170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
