Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616090 | XP_039685386.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.12e-88 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616090 | sp|Q9ZQX4|VATF_ARATH | 87.302 | 126 | 16 | 0 | 1 | 126 | 1 | 126 | 4.57e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616090 | Msa0699300 | 0.814113 | 1.817612e-51 | -8.615850e-47 |
| Msa0562170 | Msa0616090 | 0.996418 | 2.819168e-227 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616090 | MtrunA17_Chr8g0375211 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 3.79e-92 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616090 | AT4G02620.1 | 87.302 | 126 | 16 | 0 | 1 | 126 | 1 | 126 | 4.65e-80 | 231 |
Find 52 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGATGGGCTAATTTA+TGG | 0.167977 | 4_2:+65789614 | Msa0616090:three_prime_UTR |
| ATCCTTTGATTGCAGCTTTC+AGG | 0.178093 | 4_2:+65789477 | Msa0616090:three_prime_UTR |
| TACCATAGTTGGGTTTCTTT+TGG | 0.252743 | 4_2:+65787909 | Msa0616090:CDS |
| TTGTCTTCAGCTATTCGATA+TGG | 0.341107 | 4_2:+65786600 | Msa0616090:intron |
| CTCATGATTCAGTTCTTTCA+CGG | 0.364488 | 4_2:+65789403 | Msa0616090:CDS |
| TCCTTTGATTGCAGCTTTCA+GGG | 0.364620 | 4_2:+65789478 | Msa0616090:three_prime_UTR |
| TTTCCACAGGATACCATAGT+TGG | 0.389583 | 4_2:+65787898 | Msa0616090:intron |
| GAAGGGATTTCAAGAATTGC+AGG | 0.394210 | 4_2:-65789357 | None:intergenic |
| ATTTCAAGAATTGCAGGAAC+TGG | 0.410123 | 4_2:-65789351 | None:intergenic |
| GAATCATGAGCAGGATCATA+AGG | 0.423283 | 4_2:-65789390 | None:intergenic |
| AGCCAAAAGAAACCCAACTA+TGG | 0.431491 | 4_2:-65787911 | None:intergenic |
| CTTGAATGATCTGTATTGTT+TGG | 0.433385 | 4_2:+65789565 | Msa0616090:three_prime_UTR |
| ACTTACTTGAATCCACAATA+AGG | 0.438291 | 4_2:-65787972 | None:intergenic |
| CGGCGGAGCGTGACGGAGAC+GGG | 0.452843 | 4_2:-65786169 | None:intergenic |
| GATGAATTGTTGGCAGGAAT+CGG | 0.453548 | 4_2:-65786634 | None:intergenic |
| GGCAATAAGTGATGAATTGT+TGG | 0.454916 | 4_2:-65786644 | None:intergenic |
| TGCAGGTTGCAAATATGATA+AGG | 0.462958 | 4_2:+65789304 | Msa0616090:intron |
| TGACGGAGACGGGAGGAATC+CGG | 0.464286 | 4_2:-65786159 | None:intergenic |
| GGGCTAATTTATGGTTACCT+TGG | 0.465335 | 4_2:+65789623 | Msa0616090:three_prime_UTR |
| GCTTACCTCGTCAGCAATCA+TGG | 0.470639 | 4_2:-65786665 | None:intergenic |
| TCCATCTCATCTGTCGCATC+CGG | 0.474981 | 4_2:+65786194 | Msa0616090:five_prime_UTR |
| GAAGACAAATTACCTTATTG+TGG | 0.485357 | 4_2:+65787960 | Msa0616090:CDS |
| TTCCACAGGATACCATAGTT+GGG | 0.495606 | 4_2:+65787899 | Msa0616090:intron |
| TTCAATGCTGAATCAGTGGC+AGG | 0.511114 | 4_2:+65789438 | Msa0616090:CDS |
| TCATGATTCAGTTCTTTCAC+GGG | 0.514197 | 4_2:+65789404 | Msa0616090:CDS |
| CCATCTTGAAGATCTATGAC+AGG | 0.531131 | 4_2:-65789602 | None:intergenic |
| AATTGATAATATTTCATCCA+AGG | 0.534028 | 4_2:-65789640 | None:intergenic |
| ACGGCGGAGCGTGACGGAGA+CGG | 0.535709 | 4_2:-65786170 | None:intergenic |
| CATGCAATCTTCAAATCAGA+TGG | 0.539964 | 4_2:-65789705 | None:intergenic |
| GGCAGGAATCGGAACTCTGT+TGG | 0.544048 | 4_2:-65786623 | None:intergenic |
| ATAAGTGATGAATTGTTGGC+AGG | 0.546049 | 4_2:-65786640 | None:intergenic |
| AATCATGAGCAGGATCATAA+GGG | 0.560484 | 4_2:-65789389 | None:intergenic |
| ACCCTGAAAGCTGCAATCAA+AGG | 0.565789 | 4_2:-65789479 | None:intergenic |
| GAAAGAACTGAATCATGAGC+AGG | 0.572900 | 4_2:-65789399 | None:intergenic |
| ACTAGCTTTGAGAGTGCGTG+TGG | 0.574357 | 4_2:+65786113 | Msa0616090:five_prime_UTR |
| CTGTCATAGATCTTCAAGAT+GGG | 0.578380 | 4_2:+65789603 | Msa0616090:three_prime_UTR |
| TAGCAGCTCTCGAAACAGAC+CGG | 0.582567 | 4_2:+65786140 | Msa0616090:five_prime_UTR |
| TATTGCCATGATTGCTGACG+AGG | 0.587291 | 4_2:+65786660 | Msa0616090:CDS |
| ATGGAGACGGCGGAGCGTGA+CGG | 0.587931 | 4_2:-65786176 | None:intergenic |
| CCTGTCATAGATCTTCAAGA+TGG | 0.596437 | 4_2:+65789602 | Msa0616090:three_prime_UTR |
| ACCGGATGCGACAGATGAGA+TGG | 0.611335 | 4_2:-65786195 | None:intergenic |
| TCTCTTCAATGCTGAATCAG+TGG | 0.629677 | 4_2:+65789434 | Msa0616090:CDS |
| TGCGACAGATGAGATGGAGA+CGG | 0.641361 | 4_2:-65786189 | None:intergenic |
| AACGACTGTCAAACAAATCG+AGG | 0.646091 | 4_2:+65788602 | Msa0616090:CDS |
| CAAAGAATTCTCAACACGGG+AGG | 0.652854 | 4_2:+65788632 | Msa0616090:CDS |
| CGGAGCGTGACGGAGACGGG+AGG | 0.660477 | 4_2:-65786166 | None:intergenic |
| CTAGCTTTGAGAGTGCGTGT+GGG | 0.662661 | 4_2:+65786114 | Msa0616090:five_prime_UTR |
| ATTCAAAGAATTCTCAACAC+GGG | 0.675761 | 4_2:+65788629 | Msa0616090:CDS |
| CATTCAAAGAATTCTCAACA+CGG | 0.678390 | 4_2:+65788628 | Msa0616090:CDS |
| CATGAGCAGGATCATAAGGG+TGG | 0.700765 | 4_2:-65789386 | None:intergenic |
| GACAGATGAGATGGAGACGG+CGG | 0.703991 | 4_2:-65786186 | None:intergenic |
| TGGGAAACGTTGACATACGT+CGG | 0.705364 | 4_2:+65787938 | Msa0616090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATCCAAAA+TGG | - | chr4_2:65787809-65787828 | None:intergenic | 10.0% |
| !! | GAATTAAAAAATTTACAACT+TGG | - | chr4_2:65786249-65786268 | None:intergenic | 15.0% |
| !! | GAAAACTCAATTAATAAAAA+AGG | - | chr4_2:65787118-65787137 | None:intergenic | 15.0% |
| !! | ACTAGTTATTCAAATTAATA+GGG | - | chr4_2:65787721-65787740 | None:intergenic | 15.0% |
| !! | TTTACTTACTATTATTTATG+AGG | + | chr4_2:65788008-65788027 | Msa0616090:intron | 15.0% |
| !! | TTACTTACTATTATTTATGA+GGG | + | chr4_2:65788009-65788028 | Msa0616090:intron | 15.0% |
| !! | TATGAAATGTATTAAAGATA+AGG | - | chr4_2:65788271-65788290 | None:intergenic | 15.0% |
| !!! | AATTGATTCATAGTAATCAA+GGG | + | chr4_2:65786539-65786558 | Msa0616090:intron | 20.0% |
| !!! | TAAGAAAGTATATACAACAT+GGG | - | chr4_2:65786696-65786715 | None:intergenic | 20.0% |
| !!! | ATAAGAAAGTATATACAACA+TGG | - | chr4_2:65786697-65786716 | None:intergenic | 20.0% |
| !!! | TTAAAGATCTATTTTGCTAT+TGG | + | chr4_2:65786845-65786864 | Msa0616090:intron | 20.0% |
| !! | TTAATAAAAAAGGAAATCAG+TGG | - | chr4_2:65787108-65787127 | None:intergenic | 20.0% |
| !!! | TTTTTGCTAGAATCTATTTA+AGG | - | chr4_2:65787140-65787159 | None:intergenic | 20.0% |
| !! | TAACAGGATTTAAATGAAAT+AGG | + | chr4_2:65787161-65787180 | Msa0616090:intron | 20.0% |
| !!! | AAATTTAATTTCTTTGGATG+AGG | - | chr4_2:65787202-65787221 | None:intergenic | 20.0% |
| !!! | AGAGACAAATTTAATTTCTT+TGG | - | chr4_2:65787208-65787227 | None:intergenic | 20.0% |
| !! | AAATACCAGCTTATATAATA+TGG | - | chr4_2:65787336-65787355 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTCCTTATTTCA+GGG | - | chr4_2:65787488-65787507 | None:intergenic | 20.0% |
| !! | CTAGTTATTCAAATTAATAG+GGG | - | chr4_2:65787720-65787739 | None:intergenic | 20.0% |
| !! | CACTAGTTATTCAAATTAAT+AGG | - | chr4_2:65787722-65787741 | None:intergenic | 20.0% |
| !! | AAAAAATCCAAAATGGAATT+GGG | - | chr4_2:65787802-65787821 | None:intergenic | 20.0% |
| !! | AAAAAAATCCAAAATGGAAT+TGG | - | chr4_2:65787803-65787822 | None:intergenic | 20.0% |
| !!! | AATTCAATTTTATTTTCCAC+AGG | + | chr4_2:65787885-65787904 | Msa0616090:intron | 20.0% |
| !! | TTAACAGGAAAAAATTGTAT+GGG | - | chr4_2:65788050-65788069 | None:intergenic | 20.0% |
| !! | ATTAACAGGAAAAAATTGTA+TGG | - | chr4_2:65788051-65788070 | None:intergenic | 20.0% |
| !!! | AACACATGTACTATTTTTAT+TGG | - | chr4_2:65788139-65788158 | None:intergenic | 20.0% |
| !!! | TTCAAAACAAATTGATTTGA+CGG | + | chr4_2:65788542-65788561 | Msa0616090:intron | 20.0% |
| !! | ATGAAATATGACTTACAAAT+TGG | - | chr4_2:65788680-65788699 | None:intergenic | 20.0% |
| !! | AATTTGTAAGTCATATTTCA+TGG | + | chr4_2:65788679-65788698 | Msa0616090:intron | 20.0% |
| !!! | AAAATGTTGACTAGTTTATA+TGG | + | chr4_2:65789088-65789107 | Msa0616090:intron | 20.0% |
| !!! | TTGTTTTTCTTTGTACATTA+TGG | + | chr4_2:65789507-65789526 | Msa0616090:three_prime_UTR | 20.0% |
| !!! | AATTGATAATATTTCATCCA+AGG | - | chr4_2:65789643-65789662 | None:intergenic | 20.0% |
| ! | AATGAATTACGTGTTGAAAA+TGG | - | chr4_2:65786321-65786340 | None:intergenic | 25.0% |
| !!! | AACCTTTTTTTTTCTCGATT+TGG | + | chr4_2:65786419-65786438 | Msa0616090:intron | 25.0% |
| ! | ATCCAAATCGAGAAAAAAAA+AGG | - | chr4_2:65786424-65786443 | None:intergenic | 25.0% |
| !! | GAATTGATTCATAGTAATCA+AGG | + | chr4_2:65786538-65786557 | Msa0616090:intron | 25.0% |
| ! | AATCAGATGATATGATAACT+AGG | + | chr4_2:65786745-65786764 | Msa0616090:intron | 25.0% |
| !! | ACTATTATTGTACATTTTCC+TGG | + | chr4_2:65786912-65786931 | Msa0616090:intron | 25.0% |
| ! | AGATTCTAGCAAAAATTAAC+AGG | + | chr4_2:65787145-65787164 | Msa0616090:intron | 25.0% |
| ! | AAATGAAATAGGAAATTGTG+AGG | + | chr4_2:65787172-65787191 | Msa0616090:intron | 25.0% |
| ! | TCTCTGATAAAATTGAAGAA+AGG | + | chr4_2:65787225-65787244 | Msa0616090:intron | 25.0% |
| ! | CTCTGATAAAATTGAAGAAA+GGG | + | chr4_2:65787226-65787245 | Msa0616090:intron | 25.0% |
| ! | TACTTCCATATTATATAAGC+TGG | + | chr4_2:65787328-65787347 | Msa0616090:intron | 25.0% |
| ! | ATACTCCTATTACATTAACA+AGG | - | chr4_2:65787377-65787396 | None:intergenic | 25.0% |
| !! | TAGATTTGACTTAGAGTAAT+TGG | - | chr4_2:65787442-65787461 | None:intergenic | 25.0% |
| ! | TAGCCAATTACTAGTATAAA+CGG | + | chr4_2:65787460-65787479 | Msa0616090:intron | 25.0% |
| !!! | GTGTTTTATTTCCTTATTTC+AGG | - | chr4_2:65787489-65787508 | None:intergenic | 25.0% |
| ! | AAAATCAGATATAGTTCAGT+CGG | + | chr4_2:65787674-65787693 | Msa0616090:intron | 25.0% |
| ! | TAACAGGAAAAAATTGTATG+GGG | - | chr4_2:65788049-65788068 | None:intergenic | 25.0% |
| ! | AATCAGAAAATTAGGTGAAA+AGG | - | chr4_2:65788105-65788124 | None:intergenic | 25.0% |
| ! | TGTATTAAAGATAAGGTTTG+TGG | - | chr4_2:65788264-65788283 | None:intergenic | 25.0% |
| !! | AAACCGTAGAATACTTATTT+TGG | + | chr4_2:65788310-65788329 | Msa0616090:intron | 25.0% |
| !!! | AACCGTAGAATACTTATTTT+GGG | + | chr4_2:65788311-65788330 | Msa0616090:intron | 25.0% |
| ! | TTTATGCAAAGGTTATTAGT+AGG | + | chr4_2:65788346-65788365 | Msa0616090:intron | 25.0% |
| !! | TAAGTAAAAAGTCTTTTGGA+TGG | - | chr4_2:65788811-65788830 | None:intergenic | 25.0% |
| !! | AGGATAAGTAAAAAGTCTTT+TGG | - | chr4_2:65788815-65788834 | None:intergenic | 25.0% |
| ! | AACATGTGTTAAACTATGAT+AGG | - | chr4_2:65788840-65788859 | None:intergenic | 25.0% |
| !!! | TTTTAATTATCTACTGCATC+AGG | + | chr4_2:65788906-65788925 | Msa0616090:intron | 25.0% |
| ! | AATGAATAATGCTAGATAAC+TGG | + | chr4_2:65788950-65788969 | Msa0616090:intron | 25.0% |
| !! | ATTTTATGATTGAATCTCAC+TGG | - | chr4_2:65789007-65789026 | None:intergenic | 25.0% |
| ! | GTGAGATTCAATCATAAAAT+TGG | + | chr4_2:65789007-65789026 | Msa0616090:intron | 25.0% |
| ! | TCAGTTATTAGTTGGATATT+TGG | + | chr4_2:65789133-65789152 | Msa0616090:intron | 25.0% |
| !! | TGAAATAGTTTTTAAATCCC+AGG | - | chr4_2:65789198-65789217 | None:intergenic | 25.0% |
| !! | AAGGTTTTCTAAATAGAAAC+CGG | - | chr4_2:65789226-65789245 | None:intergenic | 25.0% |
| ! | TAAATAACCCAAGATTGTAA+AGG | - | chr4_2:65789262-65789281 | None:intergenic | 25.0% |
| !! | TGCAAATATGATAAGGTTTT+TGG | + | chr4_2:65789311-65789330 | Msa0616090:CDS | 25.0% |
| ATTGAAAACAGAATGCGAAT+TGG | - | chr4_2:65786377-65786396 | None:intergenic | 30.0% | |
| CAACTTGAAAGCTTAACAAT+AGG | - | chr4_2:65786513-65786532 | None:intergenic | 30.0% | |
| ! | TATTAGCTACGATGATTTTG+CGG | - | chr4_2:65786794-65786813 | None:intergenic | 30.0% |
| TCTTGAAAGGATCAAATTCA+GGG | + | chr4_2:65786982-65787001 | Msa0616090:intron | 30.0% | |
| TTCAGGGTTTAGAAAATAAG+TGG | + | chr4_2:65786998-65787017 | Msa0616090:intron | 30.0% | |
| TAGAAAATAAGTGGATGGAT+AGG | + | chr4_2:65787007-65787026 | Msa0616090:intron | 30.0% | |
| TGACTTCTTAAGTCATCTTA+TGG | - | chr4_2:65787055-65787074 | None:intergenic | 30.0% | |
| ! | AAAAGGAAATCAGTGGTTTT+AGG | - | chr4_2:65787101-65787120 | None:intergenic | 30.0% |
| ! | GATTGCCTTGTTAATGTAAT+AGG | + | chr4_2:65787369-65787388 | Msa0616090:intron | 30.0% |
| GTTCCGTTTATACTAGTAAT+TGG | - | chr4_2:65787466-65787485 | None:intergenic | 30.0% | |
| !!! | ATTGTATGGATTTTGGCTTT+GGG | - | chr4_2:65787519-65787538 | None:intergenic | 30.0% |
| ! | AACTGTCATTGTATGGATTT+TGG | - | chr4_2:65787526-65787545 | None:intergenic | 30.0% |
| AAAATCCATACAATGACAGT+TGG | + | chr4_2:65787525-65787544 | Msa0616090:intron | 30.0% | |
| ATGGAATTGGGAAATGATAT+GGG | - | chr4_2:65787790-65787809 | None:intergenic | 30.0% | |
| AATGGAATTGGGAAATGATA+TGG | - | chr4_2:65787791-65787810 | None:intergenic | 30.0% | |
| ! | ATCATTTCCCAATTCCATTT+TGG | + | chr4_2:65787792-65787811 | Msa0616090:intron | 30.0% |
| GAAGACAAATTACCTTATTG+TGG | + | chr4_2:65787960-65787979 | Msa0616090:CDS | 30.0% | |
| ACTTACTTGAATCCACAATA+AGG | - | chr4_2:65787975-65787994 | None:intergenic | 30.0% | |
| AACAGGAAAAAATTGTATGG+GGG | - | chr4_2:65788048-65788067 | None:intergenic | 30.0% | |
| ! | TTCACCTAATTTTCTGATTG+TGG | + | chr4_2:65788106-65788125 | Msa0616090:intron | 30.0% |
| TCTACCACAATCAGAAAATT+AGG | - | chr4_2:65788113-65788132 | None:intergenic | 30.0% | |
| AGACTTATTGTTGTATATCG+TGG | + | chr4_2:65788175-65788194 | Msa0616090:intron | 30.0% | |
| CATTTCTACACATCCTATAT+AGG | - | chr4_2:65788232-65788251 | None:intergenic | 30.0% | |
| ! | AAGTATTCTACGGTTTTTCT+GGG | - | chr4_2:65788306-65788325 | None:intergenic | 30.0% |
| ! | TAAGTATTCTACGGTTTTTC+TGG | - | chr4_2:65788307-65788326 | None:intergenic | 30.0% |
| TGCCCAAAATAAGTATTCTA+CGG | - | chr4_2:65788316-65788335 | None:intergenic | 30.0% | |
| !!! | TAGAATACTTATTTTGGGCA+TGG | + | chr4_2:65788316-65788335 | Msa0616090:intron | 30.0% |
| !!! | AGAATACTTATTTTGGGCAT+GGG | + | chr4_2:65788317-65788336 | Msa0616090:intron | 30.0% |
| !!! | ATGGGCTATTTTTTATGCAA+AGG | + | chr4_2:65788335-65788354 | Msa0616090:intron | 30.0% |
| TTAATTGGTACTTGAACCTT+GGG | + | chr4_2:65788385-65788404 | Msa0616090:intron | 30.0% | |
| !! | TCAAGTTCTGAAAATATTCC+TGG | + | chr4_2:65788503-65788522 | Msa0616090:intron | 30.0% |
| CATTCAAAGAATTCTCAACA+CGG | + | chr4_2:65788628-65788647 | Msa0616090:CDS | 30.0% | |
| ATTCAAAGAATTCTCAACAC+GGG | + | chr4_2:65788629-65788648 | Msa0616090:CDS | 30.0% | |
| !! | AACAGCCTGAATCATTTTTA+TGG | - | chr4_2:65788705-65788724 | None:intergenic | 30.0% |
| GTGTTAAACTATGATAGGTA+AGG | - | chr4_2:65788835-65788854 | None:intergenic | 30.0% | |
| AGTTTAACACATGTTCTGTT+TGG | + | chr4_2:65788845-65788864 | Msa0616090:intron | 30.0% | |
| TGGTAATCAACACTATTGTT+AGG | + | chr4_2:65788865-65788884 | Msa0616090:intron | 30.0% | |
| GGTAATCAACACTATTGTTA+GGG | + | chr4_2:65788866-65788885 | Msa0616090:intron | 30.0% | |
| !! | CATTAACCTCATGTTAGTTT+TGG | - | chr4_2:65788934-65788953 | None:intergenic | 30.0% |
| !! | TGACTAGTTTATATGGTCAT+TGG | + | chr4_2:65789095-65789114 | Msa0616090:intron | 30.0% |
| ! | ATAGTTTTTAAATCCCAGGT+AGG | - | chr4_2:65789194-65789213 | None:intergenic | 30.0% |
| TAAAAACTATTTCATGCACC+CGG | + | chr4_2:65789204-65789223 | Msa0616090:intron | 30.0% | |
| ! | AGGTTTTCTAAATAGAAACC+GGG | - | chr4_2:65789225-65789244 | None:intergenic | 30.0% |
| AGAAAACCTTCTTGCTTATT+TGG | + | chr4_2:65789236-65789255 | Msa0616090:intron | 30.0% | |
| ! | TTATTTGGCCTTTACAATCT+TGG | + | chr4_2:65789251-65789270 | Msa0616090:intron | 30.0% |
| ! | TATTTGGCCTTTACAATCTT+GGG | + | chr4_2:65789252-65789271 | Msa0616090:intron | 30.0% |
| TATAATTTCTTTGACTGTGC+AGG | + | chr4_2:65789287-65789306 | Msa0616090:intron | 30.0% | |
| CTTGAATGATCTGTATTGTT+TGG | + | chr4_2:65789565-65789584 | Msa0616090:three_prime_UTR | 30.0% | |
| ATTTACAACTTGGAGAGCAA+AGG | - | chr4_2:65786239-65786258 | None:intergenic | 35.0% | |
| GCGAATTGGAACAATTTGAT+CGG | - | chr4_2:65786363-65786382 | None:intergenic | 35.0% | |
| TTGTCTTCAGCTATTCGATA+TGG | + | chr4_2:65786600-65786619 | Msa0616090:intron | 35.0% | |
| ATAAGTGATGAATTGTTGGC+AGG | - | chr4_2:65786643-65786662 | None:intergenic | 35.0% | |
| GGCAATAAGTGATGAATTGT+TGG | - | chr4_2:65786647-65786666 | None:intergenic | 35.0% | |
| ACTAGGATGCATGTTTGAAT+AGG | + | chr4_2:65786762-65786781 | Msa0616090:intron | 35.0% | |
| CTAGGATGCATGTTTGAATA+GGG | + | chr4_2:65786763-65786782 | Msa0616090:intron | 35.0% | |
| !! | TTTTCTTAAGAAGTGTGCAG+TGG | - | chr4_2:65786889-65786908 | None:intergenic | 35.0% |
| ! | TATTGTACATTTTCCTGGTG+TGG | + | chr4_2:65786917-65786936 | Msa0616090:intron | 35.0% |
| GGGTTTAATAGGTTAGGTTT+AGG | + | chr4_2:65786956-65786975 | Msa0616090:intron | 35.0% | |
| ! | TAGGTTTAGGTTCTCTTGAA+AGG | + | chr4_2:65786969-65786988 | Msa0616090:intron | 35.0% |
| CTCTTGAAAGGATCAAATTC+AGG | + | chr4_2:65786981-65787000 | Msa0616090:intron | 35.0% | |
| GGGTTTAGAAAATAAGTGGA+TGG | + | chr4_2:65787002-65787021 | Msa0616090:intron | 35.0% | |
| GAAAGGGATTTAGAGATCAT+AGG | + | chr4_2:65787242-65787261 | Msa0616090:intron | 35.0% | |
| ATAAACGGAACCCTGAAATA+AGG | + | chr4_2:65787475-65787494 | Msa0616090:intron | 35.0% | |
| !!! | TTGTATGGATTTTGGCTTTG+GGG | - | chr4_2:65787518-65787537 | None:intergenic | 35.0% |
| !!! | CATTGTATGGATTTTGGCTT+TGG | - | chr4_2:65787520-65787539 | None:intergenic | 35.0% |
| ! | ACTTTCAGTTTTCAGCCATA+GGG | - | chr4_2:65787618-65787637 | None:intergenic | 35.0% |
| ! | TACTTTCAGTTTTCAGCCAT+AGG | - | chr4_2:65787619-65787638 | None:intergenic | 35.0% |
| ! | TACCATAGTTGGGTTTCTTT+TGG | + | chr4_2:65787909-65787928 | Msa0616090:CDS | 35.0% |
| AACATGATGCACAGATTAAC+AGG | - | chr4_2:65788065-65788084 | None:intergenic | 35.0% | |
| GAAAATTAGGTGAAAAGGCA+GGG | - | chr4_2:65788100-65788119 | None:intergenic | 35.0% | |
| AGAAAATTAGGTGAAAAGGC+AGG | - | chr4_2:65788101-65788120 | None:intergenic | 35.0% | |
| ! | AGTATTCTACGGTTTTTCTG+GGG | - | chr4_2:65788305-65788324 | None:intergenic | 35.0% |
| ACCAATTAACCTCAGTTTCA+GGG | - | chr4_2:65788374-65788393 | None:intergenic | 35.0% | |
| TACCAATTAACCTCAGTTTC+AGG | - | chr4_2:65788375-65788394 | None:intergenic | 35.0% | |
| GTTAATTGGTACTTGAACCT+TGG | + | chr4_2:65788384-65788403 | Msa0616090:intron | 35.0% | |
| AAACTGAGCAAGAAATTACC+AGG | - | chr4_2:65788524-65788543 | None:intergenic | 35.0% | |
| CATGGCCATAAAAATGATTC+AGG | + | chr4_2:65788697-65788716 | Msa0616090:intron | 35.0% | |
| CACTATTGTTAGGGAAAATC+TGG | + | chr4_2:65788875-65788894 | Msa0616090:intron | 35.0% | |
| TATTGTTAGGGAAAATCTGG+AGG | + | chr4_2:65788878-65788897 | Msa0616090:intron | 35.0% | |
| ATTGTTAGGGAAAATCTGGA+GGG | + | chr4_2:65788879-65788898 | Msa0616090:intron | 35.0% | |
| TTGTCGACATTTAAACCCAA+AGG | - | chr4_2:65789052-65789071 | None:intergenic | 35.0% | |
| CTGTTGGATCAGTTATTAGT+TGG | + | chr4_2:65789125-65789144 | Msa0616090:intron | 35.0% | |
| TAAAGGCCAAATAAGCAAGA+AGG | - | chr4_2:65789245-65789264 | None:intergenic | 35.0% | |
| TGCAGGTTGCAAATATGATA+AGG | + | chr4_2:65789304-65789323 | Msa0616090:intron | 35.0% | |
| ATTTCAAGAATTGCAGGAAC+TGG | - | chr4_2:65789354-65789373 | None:intergenic | 35.0% | |
| AATCATGAGCAGGATCATAA+GGG | - | chr4_2:65789392-65789411 | None:intergenic | 35.0% | |
| CTCATGATTCAGTTCTTTCA+CGG | + | chr4_2:65789403-65789422 | Msa0616090:CDS | 35.0% | |
| TCATGATTCAGTTCTTTCAC+GGG | + | chr4_2:65789404-65789423 | Msa0616090:CDS | 35.0% | |
| CTGTCATAGATCTTCAAGAT+GGG | + | chr4_2:65789603-65789622 | Msa0616090:three_prime_UTR | 35.0% | |
| !! | CTTCAAGATGGGCTAATTTA+TGG | + | chr4_2:65789614-65789633 | Msa0616090:three_prime_UTR | 35.0% |
| AAAGGATGAATAGAACGCAC+CGG | - | chr4_2:65786216-65786235 | None:intergenic | 40.0% | |
| ! | AGTTCTTTTGATGCTCACAC+TGG | + | chr4_2:65786269-65786288 | Msa0616090:intron | 40.0% |
| GATGAATTGTTGGCAGGAAT+CGG | - | chr4_2:65786637-65786656 | None:intergenic | 40.0% | |
| TAGAAGGCTTGGGGTTTAAT+AGG | + | chr4_2:65786945-65786964 | Msa0616090:intron | 40.0% | |
| GATTGCATCACACATAGTCA+AGG | + | chr4_2:65787295-65787314 | Msa0616090:intron | 40.0% | |
| ACTGCTTGGTACAAATCACA+GGG | - | chr4_2:65787405-65787424 | None:intergenic | 40.0% | |
| AGTAATTGGACCTGCAGTTT+CGG | - | chr4_2:65787428-65787447 | None:intergenic | 40.0% | |
| !!! | TGTATGGATTTTGGCTTTGG+GGG | - | chr4_2:65787517-65787536 | None:intergenic | 40.0% |
| ACACTCCAACTGTCATTGTA+TGG | - | chr4_2:65787533-65787552 | None:intergenic | 40.0% | |
| TACAATGACAGTTGGAGTGT+TGG | + | chr4_2:65787533-65787552 | Msa0616090:intron | 40.0% | |
| ACCGCACTAAAATATCCCTA+TGG | + | chr4_2:65787600-65787619 | Msa0616090:intron | 40.0% | |
| !!! | GCCATAGGGATATTTTAGTG+CGG | - | chr4_2:65787604-65787623 | None:intergenic | 40.0% |
| CGGCAATTGAACATTACAAC+TGG | + | chr4_2:65787694-65787713 | Msa0616090:intron | 40.0% | |
| TTTCCACAGGATACCATAGT+TGG | + | chr4_2:65787898-65787917 | Msa0616090:intron | 40.0% | |
| TTCCACAGGATACCATAGTT+GGG | + | chr4_2:65787899-65787918 | Msa0616090:intron | 40.0% | |
| AGCCAAAAGAAACCCAACTA+TGG | - | chr4_2:65787914-65787933 | None:intergenic | 40.0% | |
| ! | ATAGTTGGGTTTCTTTTGGC+TGG | + | chr4_2:65787913-65787932 | Msa0616090:CDS | 40.0% |
| ATCTGTGCATCATGTTCATG+TGG | + | chr4_2:65788069-65788088 | Msa0616090:intron | 40.0% | |
| TGGACCTCGTAAATAAGCAT+GGG | + | chr4_2:65788195-65788214 | Msa0616090:intron | 40.0% | |
| TATCCCCATGCTTATTTACG+AGG | - | chr4_2:65788202-65788221 | None:intergenic | 40.0% | |
| GGGATATGTCTCTCCTATAT+AGG | + | chr4_2:65788216-65788235 | Msa0616090:intron | 40.0% | |
| ACCCTGAAACTGAGGTTAAT+TGG | + | chr4_2:65788370-65788389 | Msa0616090:intron | 40.0% | |
| AGTAATCCAAGTACTACCCA+AGG | - | chr4_2:65788404-65788423 | None:intergenic | 40.0% | |
| AACGACTGTCAAACAAATCG+AGG | + | chr4_2:65788602-65788621 | Msa0616090:CDS | 40.0% | |
| TAGGAAGTAGGAACTAACAG+TGG | - | chr4_2:65788766-65788785 | None:intergenic | 40.0% | |
| CTGTTAGTTCCTACTTCCTA+CGG | + | chr4_2:65788766-65788785 | Msa0616090:intron | 40.0% | |
| ATGGAATAAGCTGATGTCTC+AGG | - | chr4_2:65788792-65788811 | None:intergenic | 40.0% | |
| CAGGTTCCAAAACTAACATG+AGG | + | chr4_2:65788925-65788944 | Msa0616090:intron | 40.0% | |
| TTCTTTCGATAGCCATCCTT+TGG | + | chr4_2:65789033-65789052 | Msa0616090:intron | 40.0% | |
| TCTTTCGATAGCCATCCTTT+GGG | + | chr4_2:65789034-65789053 | Msa0616090:intron | 40.0% | |
| CGACATTTAAACCCAAAGGA+TGG | - | chr4_2:65789048-65789067 | None:intergenic | 40.0% | |
| CAATGGCTGATTGAGCTAAA+AGG | - | chr4_2:65789165-65789184 | None:intergenic | 40.0% | |
| GAAGGGATTTCAAGAATTGC+AGG | - | chr4_2:65789360-65789379 | None:intergenic | 40.0% | |
| ! | CATAAGGGTGGTCTTTTGAA+GGG | - | chr4_2:65789377-65789396 | None:intergenic | 40.0% |
| ! | TCATAAGGGTGGTCTTTTGA+AGG | - | chr4_2:65789378-65789397 | None:intergenic | 40.0% |
| GAATCATGAGCAGGATCATA+AGG | - | chr4_2:65789393-65789412 | None:intergenic | 40.0% | |
| GAAAGAACTGAATCATGAGC+AGG | - | chr4_2:65789402-65789421 | None:intergenic | 40.0% | |
| TCTCTTCAATGCTGAATCAG+TGG | + | chr4_2:65789434-65789453 | Msa0616090:CDS | 40.0% | |
| ATCCTTTGATTGCAGCTTTC+AGG | + | chr4_2:65789477-65789496 | Msa0616090:three_prime_UTR | 40.0% | |
| TCCTTTGATTGCAGCTTTCA+GGG | + | chr4_2:65789478-65789497 | Msa0616090:three_prime_UTR | 40.0% | |
| CCATCTTGAAGATCTATGAC+AGG | - | chr4_2:65789605-65789624 | None:intergenic | 40.0% | |
| CCTGTCATAGATCTTCAAGA+TGG | + | chr4_2:65789602-65789621 | Msa0616090:three_prime_UTR | 40.0% | |
| GGGCTAATTTATGGTTACCT+TGG | + | chr4_2:65789623-65789642 | Msa0616090:three_prime_UTR | 40.0% | |
| CAACTTGGAGAGCAAAGGAA+AGG | - | chr4_2:65786234-65786253 | None:intergenic | 45.0% | |
| TATTGCCATGATTGCTGACG+AGG | + | chr4_2:65786660-65786679 | Msa0616090:CDS | 45.0% | |
| ! | TGTGGAGTACTAGAAGGCTT+GGG | + | chr4_2:65786935-65786954 | Msa0616090:intron | 45.0% |
| GGCTTGGGGTTTAATAGGTT+AGG | + | chr4_2:65786950-65786969 | Msa0616090:intron | 45.0% | |
| ATGGATAGGTTCTCGAGGAA+GGG | + | chr4_2:65787021-65787040 | Msa0616090:intron | 45.0% | |
| TGCATCACACATAGTCAAGG+AGG | + | chr4_2:65787298-65787317 | Msa0616090:intron | 45.0% | |
| GACTGCTTGGTACAAATCAC+AGG | - | chr4_2:65787406-65787425 | None:intergenic | 45.0% | |
| !!! | TATTTTAGTGCGGTGCTGCT+AGG | - | chr4_2:65787594-65787613 | None:intergenic | 45.0% |
| AACCCAACTATGGTATCCTG+TGG | - | chr4_2:65787904-65787923 | None:intergenic | 45.0% | |
| TGGGAAACGTTGACATACGT+CGG | + | chr4_2:65787938-65787957 | Msa0616090:CDS | 45.0% | |
| GTGGACCTCGTAAATAAGCA+TGG | + | chr4_2:65788194-65788213 | Msa0616090:intron | 45.0% | |
| GGACCTCGTAAATAAGCATG+GGG | + | chr4_2:65788196-65788215 | Msa0616090:intron | 45.0% | |
| TAGTAGGTACCCTGAAACTG+AGG | + | chr4_2:65788362-65788381 | Msa0616090:intron | 45.0% | |
| CTTGAACCTTGGGTAGTACT+TGG | + | chr4_2:65788395-65788414 | Msa0616090:intron | 45.0% | |
| CAAAGAATTCTCAACACGGG+AGG | + | chr4_2:65788632-65788651 | Msa0616090:CDS | 45.0% | |
| AAGTAGGAACTAACAGTGGC+AGG | - | chr4_2:65788762-65788781 | None:intergenic | 45.0% | |
| TCTCACTGGTACTGTCACAT+TGG | - | chr4_2:65788993-65789012 | None:intergenic | 45.0% | |
| !! | GGTCATTGGTTTCTCACTGT+TGG | + | chr4_2:65789109-65789128 | Msa0616090:intron | 45.0% |
| GGCTGATTGAGCTAAAAGGA+CGG | - | chr4_2:65789161-65789180 | None:intergenic | 45.0% | |
| AGCCATTGTGATATCCTACC+TGG | + | chr4_2:65789177-65789196 | Msa0616090:intron | 45.0% | |
| GCCATTGTGATATCCTACCT+GGG | + | chr4_2:65789178-65789197 | Msa0616090:intron | 45.0% | |
| TCCCAGGTAGGATATCACAA+TGG | - | chr4_2:65789182-65789201 | None:intergenic | 45.0% | |
| TTCAATGCTGAATCAGTGGC+AGG | + | chr4_2:65789438-65789457 | Msa0616090:CDS | 45.0% | |
| ACCCTGAAAGCTGCAATCAA+AGG | - | chr4_2:65789482-65789501 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTGTAAT+TGG | + | chr4_2:65787820-65787839 | Msa0616090:intron | 5.0% |
| !! | ACTAGCTTTGAGAGTGCGTG+TGG | + | chr4_2:65786113-65786132 | Msa0616090:five_prime_UTR | 50.0% |
| !! | CTAGCTTTGAGAGTGCGTGT+GGG | + | chr4_2:65786114-65786133 | Msa0616090:five_prime_UTR | 50.0% |
| TAGCAGCTCTCGAAACAGAC+CGG | + | chr4_2:65786140-65786159 | Msa0616090:five_prime_UTR | 50.0% | |
| TGCGACAGATGAGATGGAGA+CGG | - | chr4_2:65786192-65786211 | None:intergenic | 50.0% | |
| TCCATCTCATCTGTCGCATC+CGG | + | chr4_2:65786194-65786213 | Msa0616090:five_prime_UTR | 50.0% | |
| GCTTACCTCGTCAGCAATCA+TGG | - | chr4_2:65786668-65786687 | None:intergenic | 50.0% | |
| ! | TCCTGGTGTGGAGTACTAGA+AGG | + | chr4_2:65786929-65786948 | Msa0616090:intron | 50.0% |
| ! | GTGTGGAGTACTAGAAGGCT+TGG | + | chr4_2:65786934-65786953 | Msa0616090:intron | 50.0% |
| ! | GTGGAGTACTAGAAGGCTTG+GGG | + | chr4_2:65786936-65786955 | Msa0616090:intron | 50.0% |
| AGTGGATGGATAGGTTCTCG+AGG | + | chr4_2:65787016-65787035 | Msa0616090:intron | 50.0% | |
| GATGGATAGGTTCTCGAGGA+AGG | + | chr4_2:65787020-65787039 | Msa0616090:intron | 50.0% | |
| !! | TGGGTTTCTTTTGGCTGGAG+TGG | + | chr4_2:65787918-65787937 | Msa0616090:CDS | 50.0% |
| !! | GGGTTTCTTTTGGCTGGAGT+GGG | + | chr4_2:65787919-65787938 | Msa0616090:CDS | 50.0% |
| CATGAGCAGGATCATAAGGG+TGG | - | chr4_2:65789389-65789408 | None:intergenic | 50.0% | |
| GACAGATGAGATGGAGACGG+CGG | - | chr4_2:65786189-65786208 | None:intergenic | 55.0% | |
| ACCGGATGCGACAGATGAGA+TGG | - | chr4_2:65786198-65786217 | None:intergenic | 55.0% | |
| GGCAGGAATCGGAACTCTGT+TGG | - | chr4_2:65786626-65786645 | None:intergenic | 55.0% | |
| GCCTTCTAGTACTCCACACC+AGG | - | chr4_2:65786933-65786952 | None:intergenic | 55.0% | |
| ACCAAGCAGTCCGAAACTGC+AGG | + | chr4_2:65787415-65787434 | Msa0616090:intron | 55.0% | |
| ACCTGCAGTTTCGGACTGCT+TGG | - | chr4_2:65787419-65787438 | None:intergenic | 55.0% | |
| TGTCTCAGGCCGTAGGAAGT+AGG | - | chr4_2:65788778-65788797 | None:intergenic | 55.0% | |
| AAGCTGATGTCTCAGGCCGT+AGG | - | chr4_2:65788785-65788804 | None:intergenic | 55.0% | |
| TGACGGAGACGGGAGGAATC+CGG | - | chr4_2:65786162-65786181 | None:intergenic | 60.0% | |
| ATGGAGACGGCGGAGCGTGA+CGG | - | chr4_2:65786179-65786198 | None:intergenic | 65.0% | |
| ! | ACGGCGGAGCGTGACGGAGA+CGG | - | chr4_2:65786173-65786192 | None:intergenic | 70.0% |
| ! | CGGAGCGTGACGGAGACGGG+AGG | - | chr4_2:65786169-65786188 | None:intergenic | 75.0% |
| ! | CGGCGGAGCGTGACGGAGAC+GGG | - | chr4_2:65786172-65786191 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65786077 | 65789720 | 65786077 | ID=Msa0616090;Name=Msa0616090 |
| chr4_2 | mRNA | 65786077 | 65789720 | 65786077 | ID=Msa0616090-mRNA-1;Parent=Msa0616090;Name=Msa0616090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|0.75|0.6|5|247|130 |
| chr4_2 | exon | 65786077 | 65786215 | 65786077 | ID=Msa0616090-mRNA-1:exon:18672;Parent=Msa0616090-mRNA-1 |
| chr4_2 | exon | 65786610 | 65786681 | 65786610 | ID=Msa0616090-mRNA-1:exon:18673;Parent=Msa0616090-mRNA-1 |
| chr4_2 | exon | 65787907 | 65787988 | 65787907 | ID=Msa0616090-mRNA-1:exon:18674;Parent=Msa0616090-mRNA-1 |
| chr4_2 | exon | 65788601 | 65788683 | 65788601 | ID=Msa0616090-mRNA-1:exon:18675;Parent=Msa0616090-mRNA-1 |
| chr4_2 | exon | 65789309 | 65789720 | 65789309 | ID=Msa0616090-mRNA-1:exon:18676;Parent=Msa0616090-mRNA-1 |
| chr4_2 | five_prime_UTR | 65786077 | 65786215 | 65786077 | ID=Msa0616090-mRNA-1:five_prime_utr;Parent=Msa0616090-mRNA-1 |
| chr4_2 | five_prime_UTR | 65786610 | 65786618 | 65786610 | ID=Msa0616090-mRNA-1:five_prime_utr;Parent=Msa0616090-mRNA-1 |
| chr4_2 | CDS | 65786619 | 65786681 | 65786619 | ID=Msa0616090-mRNA-1:cds;Parent=Msa0616090-mRNA-1 |
| chr4_2 | CDS | 65787907 | 65787988 | 65787907 | ID=Msa0616090-mRNA-1:cds;Parent=Msa0616090-mRNA-1 |
| chr4_2 | CDS | 65788601 | 65788683 | 65788601 | ID=Msa0616090-mRNA-1:cds;Parent=Msa0616090-mRNA-1 |
| chr4_2 | CDS | 65789309 | 65789473 | 65789309 | ID=Msa0616090-mRNA-1:cds;Parent=Msa0616090-mRNA-1 |
| chr4_2 | three_prime_UTR | 65789474 | 65789720 | 65789474 | ID=Msa0616090-mRNA-1:three_prime_utr;Parent=Msa0616090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
