Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562760 | XP_039684492.1 | 94.574 | 129 | 6 | 1 | 2 | 130 | 4 | 131 | 5.13e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562760 | sp|Q8LBM2|TIF5A_ARATH | 40.000 | 130 | 67 | 5 | 1 | 123 | 3 | 128 | 2.21e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562760 | A0A396GSB0 | 94.574 | 129 | 6 | 1 | 2 | 130 | 4 | 131 | 2.45e-70 | 216 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0562760 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562760 | Msa0616760 | 0.869117 | 3.938112e-66 | -8.615850e-47 |
| Msa0562760 | Msa1176050 | 0.809389 | 1.938252e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562760 | MtrunA17_Chr8g0376421 | 94.574 | 129 | 6 | 1 | 2 | 130 | 4 | 131 | 4.72e-74 | 216 |
| Msa0562760 | MtrunA17_Chr2g0285821 | 51.449 | 138 | 47 | 5 | 1 | 123 | 1 | 133 | 2.46e-35 | 118 |
| Msa0562760 | MtrunA17_Chr8g0393051 | 50.000 | 130 | 43 | 7 | 1 | 122 | 1 | 116 | 6.31e-28 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562760 | AT1G30135.1 | 40.000 | 130 | 67 | 5 | 1 | 123 | 3 | 128 | 2.25e-20 | 80.9 |
Find 35 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTATGCCCATTGTTTA+AGG | 0.167289 | 4_1:+62887763 | Msa0562760:three_prime_UTR |
| GGATCCGATTCTTCCTCTTT+TGG | 0.271098 | 4_1:-62887552 | None:intergenic |
| GATGGTAAGGGGATGCTTCT+TGG | 0.306644 | 4_1:-62887573 | None:intergenic |
| GAGTGATGCCACTGAGATTC+AGG | 0.316546 | 4_1:+62885585 | Msa0562760:CDS |
| TTCACTGTTCATAACTCTCT+TGG | 0.398248 | 4_1:+62885264 | Msa0562760:five_prime_UTR |
| TCTTCTCATTTATCTTAAGA+TGG | 0.423225 | 4_1:-62887591 | None:intergenic |
| AAGATCATCATCAGCAATAC+AGG | 0.430017 | 4_1:+62885527 | Msa0562760:CDS |
| TCATTTATCTTAAGATGGTA+AGG | 0.430837 | 4_1:-62887586 | None:intergenic |
| CGTGGGACAAATATCAGAAA+TGG | 0.434500 | 4_1:-62885337 | None:intergenic |
| AATATTAAACCTTAAACAAT+GGG | 0.440398 | 4_1:-62887772 | None:intergenic |
| TTCTCCAAAAGAGGAAGAAT+CGG | 0.449821 | 4_1:+62887548 | Msa0562760:CDS |
| GAAATGGTGAGGACACCAAC+TGG | 0.450322 | 4_1:+62887439 | Msa0562760:CDS |
| AAATATTAAACCTTAAACAA+TGG | 0.454258 | 4_1:-62887773 | None:intergenic |
| TGCTGATGATGATCTTCTTG+TGG | 0.467687 | 4_1:-62885520 | None:intergenic |
| TGAAAGATACACTAGTATAT+AGG | 0.468122 | 4_1:-62887667 | None:intergenic |
| TGCAGAGGTTTCTCCAAAAG+AGG | 0.484466 | 4_1:+62887539 | Msa0562760:CDS |
| TTAAACGCTGATGGTGAAGA+TGG | 0.486363 | 4_1:-62887475 | None:intergenic |
| CTAGTGTATCTTTCAACAAA+GGG | 0.494852 | 4_1:+62887675 | Msa0562760:three_prime_UTR |
| GATGAAGAAGAATTTGAACT+TGG | 0.504115 | 4_1:+62885293 | Msa0562760:exon |
| CCGTTGACCATTGTCTATGA+TGG | 0.521959 | 4_1:+62885550 | Msa0562760:CDS |
| CATTTATCTTAAGATGGTAA+GGG | 0.531668 | 4_1:-62887585 | None:intergenic |
| TGCATGGAAAGAGAAGTACT+AGG | 0.548727 | 4_1:-62887508 | None:intergenic |
| TGCAAGCATTAAAATGGACC+TGG | 0.550717 | 4_1:-62887410 | None:intergenic |
| CTATATAAATTAAACGCTGA+TGG | 0.555482 | 4_1:-62887484 | None:intergenic |
| ACTAGTGTATCTTTCAACAA+AGG | 0.570785 | 4_1:+62887674 | Msa0562760:three_prime_UTR |
| GCATGGAAAGAGAAGTACTA+GGG | 0.573020 | 4_1:-62887507 | None:intergenic |
| ATTTATCTTAAGATGGTAAG+GGG | 0.589050 | 4_1:-62887584 | None:intergenic |
| CAAATATCAGAAATGGAAGG+AGG | 0.629749 | 4_1:-62885330 | None:intergenic |
| AATCTTGCCATCATAGACAA+TGG | 0.643141 | 4_1:-62885557 | None:intergenic |
| TTATGAACAGTGAAGTGTTG+TGG | 0.644716 | 4_1:-62885255 | None:intergenic |
| CCATCATAGACAATGGTCAA+CGG | 0.652322 | 4_1:-62885550 | None:intergenic |
| GGCTCTGATGATGATCCAGT+TGG | 0.655026 | 4_1:-62887454 | None:intergenic |
| GGACAAATATCAGAAATGGA+AGG | 0.658341 | 4_1:-62885333 | None:intergenic |
| GAACAGTGAAGTGTTGTGGA+CGG | 0.712661 | 4_1:-62885251 | None:intergenic |
| AACACAAACCTGAATCTCAG+TGG | 0.717414 | 4_1:-62885593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTAAAATA+TGG | + | chr4_1:62885988-62886007 | Msa0562760:intron | 0.0% |
| !!! | TTTTTATAAAAGTTTTTTGA+GGG | - | chr4_1:62885703-62885722 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAAAGTTTTTTG+AGG | - | chr4_1:62885704-62885723 | None:intergenic | 10.0% |
| !! | ATAAAATTAATGCAAAATAT+GGG | - | chr4_1:62886327-62886346 | None:intergenic | 10.0% |
| !! | AATAAAATTAATGCAAAATA+TGG | - | chr4_1:62886328-62886347 | None:intergenic | 10.0% |
| !! | AATAAATACAATTAATTGAA+AGG | - | chr4_1:62886546-62886565 | None:intergenic | 10.0% |
| !! | ACAATAATTTGAATTAAAAT+TGG | + | chr4_1:62887342-62887361 | Msa0562760:intron | 10.0% |
| !!! | ATTTTATTTCACATATAACA+AGG | - | chr4_1:62885390-62885409 | None:intergenic | 15.0% |
| !! | TAAAATTAATGCAAAATATG+GGG | - | chr4_1:62886326-62886345 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTTCTACTG+TGG | + | chr4_1:62886336-62886355 | Msa0562760:intron | 15.0% |
| !! | GCTAAAAATTTAGTAATAAA+GGG | + | chr4_1:62886733-62886752 | Msa0562760:intron | 15.0% |
| !! | AAAGATATAAAAAAATCAGT+AGG | + | chr4_1:62886816-62886835 | Msa0562760:intron | 15.0% |
| !! | CAAAAAAAATTCAAAAAACA+TGG | - | chr4_1:62886968-62886987 | None:intergenic | 15.0% |
| !!! | CATGTTTTTTGAATTTTTTT+TGG | + | chr4_1:62886966-62886985 | Msa0562760:intron | 15.0% |
| !!! | TAAATTAAAATTTCCTCTTT+TGG | - | chr4_1:62887032-62887051 | None:intergenic | 15.0% |
| !! | AAAAAAATGAAAATGTTAAC+CGG | - | chr4_1:62887149-62887168 | None:intergenic | 15.0% |
| !! | AATATTAAACCTTAAACAAT+GGG | - | chr4_1:62887775-62887794 | None:intergenic | 15.0% |
| !! | AAATATTAAACCTTAAACAA+TGG | - | chr4_1:62887776-62887795 | None:intergenic | 15.0% |
| !! | TAAAATTAACATGTACTACT+TGG | + | chr4_1:62885404-62885423 | Msa0562760:intron | 20.0% |
| !! | AAAATTAACATGTACTACTT+GGG | + | chr4_1:62885405-62885424 | Msa0562760:intron | 20.0% |
| !! | ATTAAAAGAGAGAAGATAAA+TGG | - | chr4_1:62886147-62886166 | None:intergenic | 20.0% |
| !! | ACAAAGATTTCGAAAAATAA+TGG | + | chr4_1:62886217-62886236 | Msa0562760:intron | 20.0% |
| !! | AATCAAATTAATTACCTACA+GGG | - | chr4_1:62886405-62886424 | None:intergenic | 20.0% |
| !! | TAATCAAATTAATTACCTAC+AGG | - | chr4_1:62886406-62886425 | None:intergenic | 20.0% |
| !! | GCTAAAAATTTAGTCATAAA+GGG | + | chr4_1:62886696-62886715 | Msa0562760:intron | 20.0% |
| !! | GGCTAAAAATTTAGTAATAA+AGG | + | chr4_1:62886732-62886751 | Msa0562760:intron | 20.0% |
| !!! | TTTTGTAGTTTGCATTTATA+AGG | - | chr4_1:62886765-62886784 | None:intergenic | 20.0% |
| !! | TATAAATGCAAACTACAAAA+TGG | + | chr4_1:62886765-62886784 | Msa0562760:intron | 20.0% |
| !! | GAATAGCTATAATAAATAGT+GGG | - | chr4_1:62887274-62887293 | None:intergenic | 20.0% |
| !! | TGAATAGCTATAATAAATAG+TGG | - | chr4_1:62887275-62887294 | None:intergenic | 20.0% |
| !!! | TCAAATTATTGTTGATGATA+AGG | - | chr4_1:62887334-62887353 | None:intergenic | 20.0% |
| !! | TTAAAATTGGAATTAAGTAG+TGG | + | chr4_1:62887355-62887374 | Msa0562760:intron | 20.0% |
| !! | TAAAATTGGAATTAAGTAGT+GGG | + | chr4_1:62887356-62887375 | Msa0562760:intron | 20.0% |
| !!! | TTTTTTTGCAAGCATTAAAA+TGG | - | chr4_1:62887419-62887438 | None:intergenic | 20.0% |
| !!! | CAATTTTTTAGTTGATGTTT+TGG | + | chr4_1:62887735-62887754 | Msa0562760:three_prime_UTR | 20.0% |
| !! | TTTTCAAAAAATGCATATGC+AGG | + | chr4_1:62885903-62885922 | Msa0562760:intron | 25.0% |
| !!! | TCTTCTCTCTTTTAATTAAG+AGG | + | chr4_1:62886151-62886170 | Msa0562760:intron | 25.0% |
| !!! | CTTCTCTCTTTTAATTAAGA+GGG | + | chr4_1:62886152-62886171 | Msa0562760:intron | 25.0% |
| ! | AAGATTTCGAAAAATAATGG+AGG | + | chr4_1:62886220-62886239 | Msa0562760:intron | 25.0% |
| ! | ATATATGCAATAGACAATAG+TGG | - | chr4_1:62886265-62886284 | None:intergenic | 25.0% |
| ! | ATCAAATTAATTACCTACAG+GGG | - | chr4_1:62886404-62886423 | None:intergenic | 25.0% |
| !!! | CAATTAATTGAAAGGCATTT+TGG | - | chr4_1:62886538-62886557 | None:intergenic | 25.0% |
| ! | GACATTCATCTTATAATCTT+TGG | - | chr4_1:62886651-62886670 | None:intergenic | 25.0% |
| ! | GGCTAAAAATTTAGTCATAA+AGG | + | chr4_1:62886695-62886714 | Msa0562760:intron | 25.0% |
| ! | ATAAAGGGTAAATTCCTTAT+GGG | + | chr4_1:62886711-62886730 | Msa0562760:intron | 25.0% |
| !!! | TACTAAATTTTTAGCCCATA+AGG | - | chr4_1:62886728-62886747 | None:intergenic | 25.0% |
| ! | TTTATATCTTTCGTTTGTCT+TGG | - | chr4_1:62886807-62886826 | None:intergenic | 25.0% |
| ! | GATATAAAAAAATCAGTAGG+CGG | + | chr4_1:62886819-62886838 | Msa0562760:intron | 25.0% |
| !! | ATTTGTTGACCTCAAAATTT+GGG | + | chr4_1:62886909-62886928 | Msa0562760:intron | 25.0% |
| !!! | TTTTTTTGGATCTTGTTAAC+CGG | + | chr4_1:62886980-62886999 | Msa0562760:intron | 25.0% |
| ! | ACTGGTTAATGAATCAAATA+TGG | - | chr4_1:62887114-62887133 | None:intergenic | 25.0% |
| ! | AAAATTGGAATTAAGTAGTG+GGG | + | chr4_1:62887357-62887376 | Msa0562760:intron | 25.0% |
| ! | AATGCTTGCAAAAAAAGAAA+TGG | + | chr4_1:62887423-62887442 | Msa0562760:CDS | 25.0% |
| ! | CTATATAAATTAAACGCTGA+TGG | - | chr4_1:62887487-62887506 | None:intergenic | 25.0% |
| ! | ATTTATCTTAAGATGGTAAG+GGG | - | chr4_1:62887587-62887606 | None:intergenic | 25.0% |
| ! | CATTTATCTTAAGATGGTAA+GGG | - | chr4_1:62887588-62887607 | None:intergenic | 25.0% |
| ! | TCATTTATCTTAAGATGGTA+AGG | - | chr4_1:62887589-62887608 | None:intergenic | 25.0% |
| ! | TCTTCTCATTTATCTTAAGA+TGG | - | chr4_1:62887594-62887613 | None:intergenic | 25.0% |
| ! | TGAAAGATACACTAGTATAT+AGG | - | chr4_1:62887670-62887689 | None:intergenic | 25.0% |
| GATGAAGAAGAATTTGAACT+TGG | + | chr4_1:62885293-62885312 | Msa0562760:exon | 30.0% | |
| ATGAAAGAAGAAGAAGAAGA+AGG | + | chr4_1:62885490-62885509 | Msa0562760:CDS | 30.0% | |
| ATGCAATAGTGTACATGATA+TGG | - | chr4_1:62885833-62885852 | None:intergenic | 30.0% | |
| ! | CGGATTACTCAAAAAACTTT+TGG | - | chr4_1:62886037-62886056 | None:intergenic | 30.0% |
| !!! | GTTTTTTGAGTAATCCGTTT+TGG | + | chr4_1:62886040-62886059 | Msa0562760:intron | 30.0% |
| TTGAATGAAAGTTTGGTTGA+GGG | - | chr4_1:62886108-62886127 | None:intergenic | 30.0% | |
| TTTGAATGAAAGTTTGGTTG+AGG | - | chr4_1:62886109-62886128 | None:intergenic | 30.0% | |
| AGAGAGTTTGAATGAAAGTT+TGG | - | chr4_1:62886115-62886134 | None:intergenic | 30.0% | |
| TCAAATTAATTACCTACAGG+GGG | - | chr4_1:62886403-62886422 | None:intergenic | 30.0% | |
| !!! | ATTGAAAGGCATTTTGGAAT+AGG | - | chr4_1:62886532-62886551 | None:intergenic | 30.0% |
| ! | CTTTTTCTCACTTGTCTTTT+AGG | - | chr4_1:62886676-62886695 | None:intergenic | 30.0% |
| CTAAAAGACAAGTGAGAAAA+AGG | + | chr4_1:62886674-62886693 | Msa0562760:intron | 30.0% | |
| CATAAAGGGTAAATTCCTTA+TGG | + | chr4_1:62886710-62886729 | Msa0562760:intron | 30.0% | |
| ATGCAATGCATTTGGAAATT+TGG | - | chr4_1:62886885-62886904 | None:intergenic | 30.0% | |
| AAATGAGTATGCAATGCATT+TGG | - | chr4_1:62886893-62886912 | None:intergenic | 30.0% | |
| ! | CATTTGTTGACCTCAAAATT+TGG | + | chr4_1:62886908-62886927 | Msa0562760:intron | 30.0% |
| AATAGCATCATCATCTAGTT+AGG | + | chr4_1:62887233-62887252 | Msa0562760:intron | 30.0% | |
| ATGTGAATCGTATATATTGC+AGG | + | chr4_1:62887387-62887406 | Msa0562760:intron | 30.0% | |
| TTGCAAAAAAAGAAATGGTG+AGG | + | chr4_1:62887428-62887447 | Msa0562760:CDS | 30.0% | |
| ACTAGTGTATCTTTCAACAA+AGG | + | chr4_1:62887674-62887693 | Msa0562760:three_prime_UTR | 30.0% | |
| CTAGTGTATCTTTCAACAAA+GGG | + | chr4_1:62887675-62887694 | Msa0562760:three_prime_UTR | 30.0% | |
| !! | TTATGAACAGTGAAGTGTTG+TGG | - | chr4_1:62885258-62885277 | None:intergenic | 35.0% |
| TTCACTGTTCATAACTCTCT+TGG | + | chr4_1:62885264-62885283 | Msa0562760:five_prime_UTR | 35.0% | |
| CAAATATCAGAAATGGAAGG+AGG | - | chr4_1:62885333-62885352 | None:intergenic | 35.0% | |
| GGACAAATATCAGAAATGGA+AGG | - | chr4_1:62885336-62885355 | None:intergenic | 35.0% | |
| AAGATCATCATCAGCAATAC+AGG | + | chr4_1:62885527-62885546 | Msa0562760:CDS | 35.0% | |
| AATCTTGCCATCATAGACAA+TGG | - | chr4_1:62885560-62885579 | None:intergenic | 35.0% | |
| !! | AACTTTTGGTGACTTTCAAG+AGG | - | chr4_1:62886023-62886042 | None:intergenic | 35.0% |
| GAGAACAGATTTCTCCAAAA+CGG | - | chr4_1:62886057-62886076 | None:intergenic | 35.0% | |
| CTCTAAATCAACTACCTACA+AGG | - | chr4_1:62886079-62886098 | None:intergenic | 35.0% | |
| ! | CTTGTAGGTAGTTGATTTAG+AGG | + | chr4_1:62886077-62886096 | Msa0562760:intron | 35.0% |
| ATGCAAAATATGGGGAAAAG+TGG | - | chr4_1:62886318-62886337 | None:intergenic | 35.0% | |
| ! | TAAGGTGAGTTGAAAATGAG+AGG | - | chr4_1:62887195-62887214 | None:intergenic | 35.0% |
| TTCTCCAAAAGAGGAAGAAT+CGG | + | chr4_1:62887548-62887567 | Msa0562760:CDS | 35.0% | |
| CAGTTTATGCCCATTGTTTA+AGG | + | chr4_1:62887763-62887782 | Msa0562760:three_prime_UTR | 35.0% | |
| CGTGGGACAAATATCAGAAA+TGG | - | chr4_1:62885340-62885359 | None:intergenic | 40.0% | |
| GATGAAGAAGATGCTTACGT+GGG | - | chr4_1:62885357-62885376 | None:intergenic | 40.0% | |
| AGATGAAGAAGATGCTTACG+TGG | - | chr4_1:62885358-62885377 | None:intergenic | 40.0% | |
| !! | GGACATACGTGGTTCTAATT+AGG | + | chr4_1:62885426-62885445 | Msa0562760:intron | 40.0% |
| ! | TGCTGATGATGATCTTCTTG+TGG | - | chr4_1:62885523-62885542 | None:intergenic | 40.0% |
| CCATCATAGACAATGGTCAA+CGG | - | chr4_1:62885553-62885572 | None:intergenic | 40.0% | |
| AACACAAACCTGAATCTCAG+TGG | - | chr4_1:62885596-62885615 | None:intergenic | 40.0% | |
| GAGAAATCTGTTCTCCTTGT+AGG | + | chr4_1:62886062-62886081 | Msa0562760:intron | 40.0% | |
| TGGAGGAGAGTTTGATTAAG+AGG | + | chr4_1:62886237-62886256 | Msa0562760:intron | 40.0% | |
| ATCTGAACTGTCCTTGTGAA+TGG | + | chr4_1:62886847-62886866 | Msa0562760:intron | 40.0% | |
| ! | ATAGTCGTGCCCAAATTTTG+AGG | - | chr4_1:62886921-62886940 | None:intergenic | 40.0% |
| TGATTCATTAACCAGTGCCT+CGG | + | chr4_1:62887118-62887137 | Msa0562760:intron | 40.0% | |
| AGCATCATCATCTAGTTAGG+AGG | + | chr4_1:62887236-62887255 | Msa0562760:intron | 40.0% | |
| AATCGTATATATTGCAGGCC+AGG | + | chr4_1:62887392-62887411 | Msa0562760:intron | 40.0% | |
| TGCAAGCATTAAAATGGACC+TGG | - | chr4_1:62887413-62887432 | None:intergenic | 40.0% | |
| ! | TTAAACGCTGATGGTGAAGA+TGG | - | chr4_1:62887478-62887497 | None:intergenic | 40.0% |
| !! | GCATGGAAAGAGAAGTACTA+GGG | - | chr4_1:62887510-62887529 | None:intergenic | 40.0% |
| !! | TGCATGGAAAGAGAAGTACT+AGG | - | chr4_1:62887511-62887530 | None:intergenic | 40.0% |
| !! | GAACAGTGAAGTGTTGTGGA+CGG | - | chr4_1:62885254-62885273 | None:intergenic | 45.0% |
| TGTACTACTTGGGACATACG+TGG | + | chr4_1:62885415-62885434 | Msa0562760:intron | 45.0% | |
| CCGTTGACCATTGTCTATGA+TGG | + | chr4_1:62885550-62885569 | Msa0562760:CDS | 45.0% | |
| !! | TGCAGGTCTTATTGCACATG+TGG | + | chr4_1:62885920-62885939 | Msa0562760:intron | 45.0% |
| CAGCATTCACTCCATTCACA+AGG | - | chr4_1:62886861-62886880 | None:intergenic | 45.0% | |
| CTTGTGAATGGAGTGAATGC+TGG | + | chr4_1:62886859-62886878 | Msa0562760:intron | 45.0% | |
| CTGGTTAAGGAAGCCAAAAG+AGG | + | chr4_1:62887016-62887035 | Msa0562760:intron | 45.0% | |
| GATTCATTAACCAGTGCCTC+GGG | + | chr4_1:62887119-62887138 | Msa0562760:intron | 45.0% | |
| ATTCATTAACCAGTGCCTCG+GGG | + | chr4_1:62887120-62887139 | Msa0562760:intron | 45.0% | |
| ! | CCTCTGCAACGATTTTTGCA+TGG | - | chr4_1:62887527-62887546 | None:intergenic | 45.0% |
| CCATGCAAAAATCGTTGCAG+AGG | + | chr4_1:62887524-62887543 | Msa0562760:CDS | 45.0% | |
| TGCAGAGGTTTCTCCAAAAG+AGG | + | chr4_1:62887539-62887558 | Msa0562760:CDS | 45.0% | |
| ! | GGATCCGATTCTTCCTCTTT+TGG | - | chr4_1:62887555-62887574 | None:intergenic | 45.0% |
| !!! | ATTTTAATTTTGATATATTA+AGG | - | chr4_1:62887213-62887232 | None:intergenic | 5.0% |
| GAGTGATGCCACTGAGATTC+AGG | + | chr4_1:62885585-62885604 | Msa0562760:CDS | 50.0% | |
| TAGCAATGTACTCCCCCTGT+AGG | + | chr4_1:62886388-62886407 | Msa0562760:intron | 50.0% | |
| ATCTTGTTAACCGGTGTCCC+CGG | + | chr4_1:62886989-62887008 | Msa0562760:intron | 50.0% | |
| GAAATGGTGAGGACACCAAC+TGG | + | chr4_1:62887439-62887458 | Msa0562760:CDS | 50.0% | |
| ! | GGCTCTGATGATGATCCAGT+TGG | - | chr4_1:62887457-62887476 | None:intergenic | 50.0% |
| GATGGTAAGGGGATGCTTCT+TGG | - | chr4_1:62887576-62887595 | None:intergenic | 50.0% | |
| CTTCCTTAACCAGTGCTCCG+GGG | - | chr4_1:62887009-62887028 | None:intergenic | 55.0% | |
| GCTTCCTTAACCAGTGCTCC+GGG | - | chr4_1:62887010-62887029 | None:intergenic | 55.0% | |
| GGCTTCCTTAACCAGTGCTC+CGG | - | chr4_1:62887011-62887030 | None:intergenic | 55.0% | |
| AATGTTAACCGGTGTCCCCG+AGG | - | chr4_1:62887138-62887157 | None:intergenic | 55.0% | |
| !! | TGTCCCCGGAGCACTGGTTA+AGG | + | chr4_1:62887003-62887022 | Msa0562760:intron | 60.0% |
| AACCAGTGCTCCGGGGACAC+CGG | - | chr4_1:62887002-62887021 | None:intergenic | 65.0% | |
| AACCAGTGCCTCGGGGACAC+CGG | + | chr4_1:62887127-62887146 | Msa0562760:intron | 65.0% | |
| AACCGGTGTCCCCGGAGCAC+TGG | + | chr4_1:62886997-62887016 | Msa0562760:intron | 70.0% | |
| AACCGGTGTCCCCGAGGCAC+TGG | - | chr4_1:62887132-62887151 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 62885226 | 62887795 | 62885226 | ID=Msa0562760;Name=Msa0562760 |
| chr4_1 | mRNA | 62885226 | 62887795 | 62885226 | ID=Msa0562760-mRNA-1;Parent=Msa0562760;Name=Msa0562760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=68|1|1|1|1|1|3|177|130 |
| chr4_1 | exon | 62885226 | 62885358 | 62885226 | ID=Msa0562760-mRNA-1:exon:19851;Parent=Msa0562760-mRNA-1 |
| chr4_1 | exon | 62885489 | 62885606 | 62885489 | ID=Msa0562760-mRNA-1:exon:19852;Parent=Msa0562760-mRNA-1 |
| chr4_1 | exon | 62887409 | 62887795 | 62887409 | ID=Msa0562760-mRNA-1:exon:19853;Parent=Msa0562760-mRNA-1 |
| chr4_1 | five_prime_UTR | 62885226 | 62885293 | 62885226 | ID=Msa0562760-mRNA-1:five_prime_utr;Parent=Msa0562760-mRNA-1 |
| chr4_1 | CDS | 62885294 | 62885358 | 62885294 | ID=Msa0562760-mRNA-1:cds;Parent=Msa0562760-mRNA-1 |
| chr4_1 | CDS | 62885489 | 62885606 | 62885489 | ID=Msa0562760-mRNA-1:cds;Parent=Msa0562760-mRNA-1 |
| chr4_1 | CDS | 62887409 | 62887618 | 62887409 | ID=Msa0562760-mRNA-1:cds;Parent=Msa0562760-mRNA-1 |
| chr4_1 | three_prime_UTR | 62887619 | 62887795 | 62887619 | ID=Msa0562760-mRNA-1:three_prime_utr;Parent=Msa0562760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
