Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176050 | XP_013444575.1 | 88.608 | 79 | 8 | 1 | 211 | 289 | 385 | 462 | 3.04e-33 | 137 |
| Msa1176050 | XP_013444575.1 | 94.554 | 202 | 11 | 0 | 12 | 213 | 12 | 213 | 9.19e-139 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176050 | sp|Q39204|MYC2_ARATH | 31.053 | 190 | 94 | 3 | 25 | 181 | 67 | 252 | 1.04e-29 | 121 |
| Msa1176050 | sp|Q39204|MYC2_ARATH | 50.633 | 79 | 37 | 2 | 211 | 289 | 546 | 622 | 7.50e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176050 | A0A072TYH1 | 88.608 | 79 | 8 | 1 | 211 | 289 | 385 | 462 | 1.45e-33 | 137 |
| Msa1176050 | A0A072TYH1 | 94.554 | 202 | 11 | 0 | 12 | 213 | 12 | 213 | 4.39e-139 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011500 | Msa1176050 | 0.801497 | 8.756639e-49 | -8.615850e-47 |
| Msa0060400 | Msa1176050 | 0.806888 | 6.609472e-50 | -8.615850e-47 |
| Msa0616760 | Msa1176050 | 0.804817 | 1.800827e-49 | -8.615850e-47 |
| Msa0626720 | Msa1176050 | 0.814631 | 1.396148e-51 | -8.615850e-47 |
| Msa0664850 | Msa1176050 | 0.802901 | 4.502200e-49 | -8.615850e-47 |
| Msa0796920 | Msa1176050 | 0.808882 | 2.488907e-50 | -8.615850e-47 |
| Msa0814710 | Msa1176050 | 0.802990 | 4.314807e-49 | -8.615850e-47 |
| Msa0151350 | Msa1176050 | 0.803987 | 2.681268e-49 | -8.615850e-47 |
| Msa0981850 | Msa1176050 | 0.805364 | 1.383640e-49 | -8.615850e-47 |
| Msa0272440 | Msa1176050 | 0.805751 | 1.147514e-49 | -8.615850e-47 |
| Msa1176050 | Msa1307210 | 0.884818 | 1.385073e-71 | -8.615850e-47 |
| Msa1176050 | Msa1321050 | 0.803398 | 3.553980e-49 | -8.615850e-47 |
| Msa1176050 | Msa1386040 | 0.816746 | 4.718163e-52 | -8.615850e-47 |
| Msa0483650 | Msa1176050 | 0.800558 | 1.362096e-48 | -8.615850e-47 |
| Msa0562760 | Msa1176050 | 0.809389 | 1.938252e-50 | -8.615850e-47 |
| Msa0586910 | Msa1176050 | 0.826547 | 2.554708e-54 | -8.615850e-47 |
| Msa0868020 | Msa1176050 | 0.815811 | 7.633562e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176050 | MtrunA17_Chr8g0346161 | 94.554 | 202 | 11 | 0 | 12 | 213 | 12 | 213 | 8.45e-143 | 409 |
| Msa1176050 | MtrunA17_Chr8g0346161 | 88.608 | 79 | 8 | 1 | 211 | 289 | 385 | 462 | 2.80e-37 | 137 |
| Msa1176050 | MtrunA17_Chr8g0346151 | 87.293 | 181 | 13 | 1 | 22 | 202 | 19 | 189 | 1.07e-103 | 310 |
| Msa1176050 | MtrunA17_Chr8g0346151 | 92.405 | 79 | 6 | 0 | 211 | 289 | 376 | 454 | 2.81e-43 | 153 |
| Msa1176050 | MtrunA17_Chr5g0411331 | 31.720 | 186 | 94 | 4 | 25 | 181 | 27 | 208 | 8.67e-30 | 113 |
| Msa1176050 | MtrunA17_Chr5g0411341 | 32.787 | 183 | 90 | 3 | 25 | 178 | 44 | 222 | 2.60e-29 | 117 |
| Msa1176050 | MtrunA17_Chr5g0411341 | 47.253 | 91 | 46 | 2 | 199 | 289 | 585 | 673 | 2.08e-17 | 82.4 |
| Msa1176050 | MtrunA17_Chr8g0366751 | 30.292 | 274 | 146 | 11 | 25 | 263 | 53 | 316 | 4.91e-27 | 110 |
| Msa1176050 | MtrunA17_Chr8g0366751 | 45.833 | 72 | 38 | 1 | 210 | 281 | 565 | 635 | 2.48e-14 | 73.2 |
| Msa1176050 | MtrunA17_Chr1g0185621 | 28.141 | 199 | 98 | 6 | 19 | 181 | 4 | 193 | 4.16e-19 | 87.4 |
| Msa1176050 | MtrunA17_Chr8g0386921 | 27.234 | 235 | 122 | 8 | 29 | 221 | 7 | 234 | 2.10e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176050 | AT1G32640.1 | 31.053 | 190 | 94 | 3 | 25 | 181 | 67 | 252 | 1.06e-30 | 121 |
| Msa1176050 | AT1G32640.1 | 50.633 | 79 | 37 | 2 | 211 | 289 | 546 | 622 | 7.62e-16 | 77.8 |
| Msa1176050 | AT4G00870.1 | 37.356 | 174 | 84 | 5 | 20 | 181 | 29 | 189 | 2.32e-28 | 113 |
| Msa1176050 | AT4G17880.1 | 28.646 | 192 | 97 | 3 | 26 | 181 | 63 | 250 | 1.04e-27 | 112 |
| Msa1176050 | AT4G17880.1 | 46.479 | 71 | 37 | 1 | 210 | 280 | 508 | 577 | 3.36e-14 | 73.2 |
| Msa1176050 | AT5G46760.1 | 32.065 | 184 | 89 | 4 | 25 | 176 | 51 | 230 | 5.20e-27 | 110 |
| Msa1176050 | AT5G46760.1 | 45.000 | 80 | 42 | 2 | 210 | 289 | 511 | 588 | 4.98e-14 | 72.4 |
| Msa1176050 | AT5G46830.1 | 26.754 | 228 | 110 | 8 | 18 | 192 | 18 | 241 | 6.55e-18 | 84.0 |
| Msa1176050 | AT1G01260.1 | 28.571 | 196 | 99 | 5 | 26 | 184 | 48 | 239 | 1.22e-13 | 71.2 |
| Msa1176050 | AT1G01260.2 | 28.571 | 196 | 99 | 5 | 26 | 184 | 48 | 239 | 1.22e-13 | 71.2 |
| Msa1176050 | AT1G01260.3 | 28.571 | 196 | 99 | 5 | 26 | 184 | 48 | 239 | 1.22e-13 | 71.2 |
| Msa1176050 | AT4G00480.2 | 25.118 | 211 | 104 | 5 | 29 | 191 | 24 | 228 | 1.47e-11 | 65.1 |
| Msa1176050 | AT4G00480.1 | 25.118 | 211 | 104 | 5 | 29 | 191 | 24 | 228 | 2.13e-11 | 64.7 |
| Msa1176050 | AT4G00480.3 | 25.118 | 211 | 104 | 5 | 29 | 191 | 24 | 228 | 2.52e-11 | 64.3 |
Find 49 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAGATTTGGAGTTTC+AGG | 0.118528 | 8_1:-7759304 | Msa1176050:CDS |
| TCCAAACCCAATCCGAAAAT+TGG | 0.161848 | 8_1:-7760084 | Msa1176050:CDS |
| GAGATTGATGTGAAGATTAT+AGG | 0.182361 | 8_1:-7759393 | Msa1176050:CDS |
| TGAGAATTGCAGACCTAATT+AGG | 0.229660 | 8_1:+7759190 | None:intergenic |
| GTTTGAAATTGTTGTTTCTT+TGG | 0.232211 | 8_1:+7759979 | None:intergenic |
| AAGGTAAACCTTTCTTATCT+TGG | 0.238310 | 8_1:-7760024 | Msa1176050:CDS |
| ATGACAATATCCAACAAAAT+TGG | 0.270722 | 8_1:-7759694 | Msa1176050:CDS |
| TCTTCATTTCTCATCTCATT+AGG | 0.290165 | 8_1:+7759216 | None:intergenic |
| GACCGTTAATAAAGTTATAA+TGG | 0.291909 | 8_1:-7759262 | Msa1176050:CDS |
| AGGTAAACCTTTCTTATCTT+GGG | 0.292720 | 8_1:-7760023 | Msa1176050:CDS |
| AACCATTATAACTTTATTAA+CGG | 0.312837 | 8_1:+7759260 | None:intergenic |
| TACCGATGTCGGCGAATGTT+TGG | 0.330440 | 8_1:+7759570 | None:intergenic |
| AATGAGTGTCTTGAAAGATT+TGG | 0.347886 | 8_1:-7759313 | Msa1176050:CDS |
| TCCATGCACGTGTGCTTCAT+TGG | 0.351119 | 8_1:+7759772 | None:intergenic |
| AGGGTTAGGGTTTGTGGTGA+AGG | 0.352816 | 8_1:+7760130 | None:intergenic |
| TGTTGAAGGGTTAGGGTTTG+TGG | 0.360355 | 8_1:+7760124 | None:intergenic |
| AACTAACGGTGTAATCGAAA+TGG | 0.368563 | 8_1:-7759723 | Msa1176050:CDS |
| TAGATTTAGCTTGGTGTACT+AGG | 0.375629 | 8_1:+7759669 | None:intergenic |
| TTGTTGTTTCTTTGGTTCCT+TGG | 0.388661 | 8_1:+7759987 | None:intergenic |
| CAAACAACAAAAGATGAAAA+AGG | 0.404302 | 8_1:-7760043 | Msa1176050:CDS |
| GGGTTAGGGTTTGTGGTGAA+GGG | 0.421882 | 8_1:+7760131 | None:intergenic |
| TTGCTTTAGATTCTGTACTT+TGG | 0.425852 | 8_1:-7759838 | Msa1176050:CDS |
| AGATTTGTCAAGTGGGTTTG+TGG | 0.429194 | 8_1:+7759598 | None:intergenic |
| GAAATGAAGAGAGCCTAATT+AGG | 0.443372 | 8_1:-7759203 | Msa1176050:CDS |
| CCTTTCTTATCTTGGGGTGA+AGG | 0.446476 | 8_1:-7760016 | Msa1176050:CDS |
| CCAAACCCAATCCGAAAATT+GGG | 0.468035 | 8_1:-7760083 | Msa1176050:CDS |
| GACAGCAACACGTGTACAAA+TGG | 0.479858 | 8_1:-7759947 | Msa1176050:CDS |
| GCTTCTTCAATTTCATTACC+TGG | 0.483921 | 8_1:-7759869 | Msa1176050:CDS |
| ACTAACGGTGTAATCGAAAT+GGG | 0.485666 | 8_1:-7759722 | Msa1176050:CDS |
| TTTGAAACATAGATTTAGCT+TGG | 0.486812 | 8_1:+7759660 | None:intergenic |
| CCTTCACCCCAAGATAAGAA+AGG | 0.497048 | 8_1:+7760016 | None:intergenic |
| TCGATTACACCGTTAGTTGT+CGG | 0.498052 | 8_1:+7759728 | None:intergenic |
| ATTTGTATTCCGACAACTAA+CGG | 0.507792 | 8_1:-7759737 | Msa1176050:CDS |
| TCCAATGAAGCACACGTGCA+TGG | 0.524272 | 8_1:-7759773 | Msa1176050:CDS |
| TGGAACATAGATTTGTCAAG+TGG | 0.527748 | 8_1:+7759590 | None:intergenic |
| ACACTCATTAATCGTGCACT+AGG | 0.531276 | 8_1:+7759327 | None:intergenic |
| AATTGAAGAAGCATTACCTA+TGG | 0.532558 | 8_1:+7759880 | None:intergenic |
| GGTAAACCTTTCTTATCTTG+GGG | 0.537701 | 8_1:-7760022 | Msa1176050:CDS |
| TTCCAAACATTCGCCGACAT+CGG | 0.537863 | 8_1:-7759572 | Msa1176050:intron |
| ATCATAGAGGAAGATGAAGA+AGG | 0.553296 | 8_1:+7760178 | None:intergenic |
| TGGGGTGAAGGCTATTTCCA+AGG | 0.580662 | 8_1:-7760004 | Msa1176050:CDS |
| GGAACATAGATTTGTCAAGT+GGG | 0.591339 | 8_1:+7759591 | None:intergenic |
| GTACAAATGGTGATGCTGAA+TGG | 0.602234 | 8_1:-7759934 | Msa1176050:CDS |
| TCTAAAGCAAAAGCTTTACC+AGG | 0.602957 | 8_1:+7759851 | None:intergenic |
| GATTATAGGACATGATGCTA+TGG | 0.615350 | 8_1:-7759379 | Msa1176050:CDS |
| ACCGGAAACGATACCGATGT+CGG | 0.623478 | 8_1:+7759559 | None:intergenic |
| CACTCATTAATCGTGCACTA+GGG | 0.626623 | 8_1:+7759328 | None:intergenic |
| ATGAGGAAATGATATCATAG+AGG | 0.640466 | 8_1:+7760165 | None:intergenic |
| TTCTGAGTTAGATTCTGACG+AGG | 0.697473 | 8_1:+7759634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCATTATAACTTTATTAA+CGG | + | chr8_1:7760106-7760125 | None:intergenic | 15.0% |
| !! | AACCATTATAACTTTATTAA+CGG | + | chr8_1:7760106-7760125 | None:intergenic | 15.0% |
| !!! | AAATTGAAGTTTTTGTTGAA+GGG | + | chr8_1:7759255-7759274 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGTTTTTGTTGA+AGG | + | chr8_1:7759256-7759275 | None:intergenic | 20.0% |
| !!! | AAATTGAAGTTTTTGTTGAA+GGG | + | chr8_1:7759255-7759274 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGTTTTTGTTGA+AGG | + | chr8_1:7759256-7759275 | None:intergenic | 20.0% |
| ! | CAAACAACAAAAGATGAAAA+AGG | - | chr8_1:7759320-7759339 | Msa1176050:CDS | 25.0% |
| !!! | GTTTGAAATTGTTGTTTCTT+TGG | + | chr8_1:7759387-7759406 | None:intergenic | 25.0% |
| ! | ATGACAATATCCAACAAAAT+TGG | - | chr8_1:7759669-7759688 | Msa1176050:CDS | 25.0% |
| !! | TTTGAAACATAGATTTAGCT+TGG | + | chr8_1:7759706-7759725 | None:intergenic | 25.0% |
| ! | GACCGTTAATAAAGTTATAA+TGG | - | chr8_1:7760101-7760120 | Msa1176050:CDS | 25.0% |
| ! | CAAACAACAAAAGATGAAAA+AGG | - | chr8_1:7759320-7759339 | Msa1176050:CDS | 25.0% |
| !!! | GTTTGAAATTGTTGTTTCTT+TGG | + | chr8_1:7759387-7759406 | None:intergenic | 25.0% |
| ! | ATGACAATATCCAACAAAAT+TGG | - | chr8_1:7759669-7759688 | Msa1176050:CDS | 25.0% |
| !! | TTTGAAACATAGATTTAGCT+TGG | + | chr8_1:7759706-7759725 | None:intergenic | 25.0% |
| ! | GACCGTTAATAAAGTTATAA+TGG | - | chr8_1:7760101-7760120 | Msa1176050:CDS | 25.0% |
| ATGAGGAAATGATATCATAG+AGG | + | chr8_1:7759201-7759220 | None:intergenic | 30.0% | |
| ! | AAGTTTTTGTTGAAGGGTTA+GGG | + | chr8_1:7759249-7759268 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTTTGCCACAAAA+TGG | + | chr8_1:7759312-7759331 | None:intergenic | 30.0% |
| AAGGTAAACCTTTCTTATCT+TGG | - | chr8_1:7759339-7759358 | Msa1176050:CDS | 30.0% | |
| AGGTAAACCTTTCTTATCTT+GGG | - | chr8_1:7759340-7759359 | Msa1176050:CDS | 30.0% | |
| ! | TTGAGTCGAAATTTTTCCAT+AGG | - | chr8_1:7759467-7759486 | Msa1176050:intron | 30.0% |
| !! | AATTGAAGAAGCATTACCTA+TGG | + | chr8_1:7759486-7759505 | None:intergenic | 30.0% |
| ! | TTGCTTTAGATTCTGTACTT+TGG | - | chr8_1:7759525-7759544 | Msa1176050:intron | 30.0% |
| ATTTGTATTCCGACAACTAA+CGG | - | chr8_1:7759626-7759645 | Msa1176050:CDS | 30.0% | |
| GAGATTGATGTGAAGATTAT+AGG | - | chr8_1:7759970-7759989 | Msa1176050:CDS | 30.0% | |
| AATGAGTGTCTTGAAAGATT+TGG | - | chr8_1:7760050-7760069 | Msa1176050:CDS | 30.0% | |
| TCTTCATTTCTCATCTCATT+AGG | + | chr8_1:7760150-7760169 | None:intergenic | 30.0% | |
| ATGAGGAAATGATATCATAG+AGG | + | chr8_1:7759201-7759220 | None:intergenic | 30.0% | |
| ! | AAGTTTTTGTTGAAGGGTTA+GGG | + | chr8_1:7759249-7759268 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTTTGCCACAAAA+TGG | + | chr8_1:7759312-7759331 | None:intergenic | 30.0% |
| AAGGTAAACCTTTCTTATCT+TGG | - | chr8_1:7759339-7759358 | Msa1176050:CDS | 30.0% | |
| AGGTAAACCTTTCTTATCTT+GGG | - | chr8_1:7759340-7759359 | Msa1176050:CDS | 30.0% | |
| ! | TTGAGTCGAAATTTTTCCAT+AGG | - | chr8_1:7759467-7759486 | Msa1176050:intron | 30.0% |
| !! | AATTGAAGAAGCATTACCTA+TGG | + | chr8_1:7759486-7759505 | None:intergenic | 30.0% |
| ! | TTGCTTTAGATTCTGTACTT+TGG | - | chr8_1:7759525-7759544 | Msa1176050:intron | 30.0% |
| ATTTGTATTCCGACAACTAA+CGG | - | chr8_1:7759626-7759645 | Msa1176050:CDS | 30.0% | |
| GAGATTGATGTGAAGATTAT+AGG | - | chr8_1:7759970-7759989 | Msa1176050:CDS | 30.0% | |
| AATGAGTGTCTTGAAAGATT+TGG | - | chr8_1:7760050-7760069 | Msa1176050:CDS | 30.0% | |
| TCTTCATTTCTCATCTCATT+AGG | + | chr8_1:7760150-7760169 | None:intergenic | 30.0% | |
| ATCATAGAGGAAGATGAAGA+AGG | + | chr8_1:7759188-7759207 | None:intergenic | 35.0% | |
| ! | GAAGGGTTTTCATTTTCATG+AGG | + | chr8_1:7759218-7759237 | None:intergenic | 35.0% |
| ! | GAAGTTTTTGTTGAAGGGTT+AGG | + | chr8_1:7759250-7759269 | None:intergenic | 35.0% |
| ! | ATAGACCCAATTTTCGGATT+GGG | + | chr8_1:7759288-7759307 | None:intergenic | 35.0% |
| ! | AATGGCATAGACCCAATTTT+CGG | + | chr8_1:7759294-7759313 | None:intergenic | 35.0% |
| GGTAAACCTTTCTTATCTTG+GGG | - | chr8_1:7759341-7759360 | Msa1176050:CDS | 35.0% | |
| !! | TTGTTGTTTCTTTGGTTCCT+TGG | + | chr8_1:7759379-7759398 | None:intergenic | 35.0% |
| GCTTCTTCAATTTCATTACC+TGG | - | chr8_1:7759494-7759513 | Msa1176050:intron | 35.0% | |
| ! | TCTAAAGCAAAAGCTTTACC+AGG | + | chr8_1:7759515-7759534 | None:intergenic | 35.0% |
| AACTAACGGTGTAATCGAAA+TGG | - | chr8_1:7759640-7759659 | Msa1176050:CDS | 35.0% | |
| ACTAACGGTGTAATCGAAAT+GGG | - | chr8_1:7759641-7759660 | Msa1176050:CDS | 35.0% | |
| ! | GTACTAGGTTCCAATTTTGT+TGG | + | chr8_1:7759682-7759701 | None:intergenic | 35.0% |
| !! | TAGATTTAGCTTGGTGTACT+AGG | + | chr8_1:7759697-7759716 | None:intergenic | 35.0% |
| GGAACATAGATTTGTCAAGT+GGG | + | chr8_1:7759775-7759794 | None:intergenic | 35.0% | |
| TGGAACATAGATTTGTCAAG+TGG | + | chr8_1:7759776-7759795 | None:intergenic | 35.0% | |
| GATTATAGGACATGATGCTA+TGG | - | chr8_1:7759984-7760003 | Msa1176050:CDS | 35.0% | |
| ! | CTTGAAAGATTTGGAGTTTC+AGG | - | chr8_1:7760059-7760078 | Msa1176050:CDS | 35.0% |
| GAAATGAAGAGAGCCTAATT+AGG | - | chr8_1:7760160-7760179 | Msa1176050:CDS | 35.0% | |
| TGAGAATTGCAGACCTAATT+AGG | + | chr8_1:7760176-7760195 | None:intergenic | 35.0% | |
| ATCATAGAGGAAGATGAAGA+AGG | + | chr8_1:7759188-7759207 | None:intergenic | 35.0% | |
| ! | GAAGGGTTTTCATTTTCATG+AGG | + | chr8_1:7759218-7759237 | None:intergenic | 35.0% |
| ! | GAAGTTTTTGTTGAAGGGTT+AGG | + | chr8_1:7759250-7759269 | None:intergenic | 35.0% |
| ! | ATAGACCCAATTTTCGGATT+GGG | + | chr8_1:7759288-7759307 | None:intergenic | 35.0% |
| ! | AATGGCATAGACCCAATTTT+CGG | + | chr8_1:7759294-7759313 | None:intergenic | 35.0% |
| GGTAAACCTTTCTTATCTTG+GGG | - | chr8_1:7759341-7759360 | Msa1176050:CDS | 35.0% | |
| !! | TTGTTGTTTCTTTGGTTCCT+TGG | + | chr8_1:7759379-7759398 | None:intergenic | 35.0% |
| GCTTCTTCAATTTCATTACC+TGG | - | chr8_1:7759494-7759513 | Msa1176050:intron | 35.0% | |
| ! | TCTAAAGCAAAAGCTTTACC+AGG | + | chr8_1:7759515-7759534 | None:intergenic | 35.0% |
| AACTAACGGTGTAATCGAAA+TGG | - | chr8_1:7759640-7759659 | Msa1176050:CDS | 35.0% | |
| ACTAACGGTGTAATCGAAAT+GGG | - | chr8_1:7759641-7759660 | Msa1176050:CDS | 35.0% | |
| ! | GTACTAGGTTCCAATTTTGT+TGG | + | chr8_1:7759682-7759701 | None:intergenic | 35.0% |
| !! | TAGATTTAGCTTGGTGTACT+AGG | + | chr8_1:7759697-7759716 | None:intergenic | 35.0% |
| GGAACATAGATTTGTCAAGT+GGG | + | chr8_1:7759775-7759794 | None:intergenic | 35.0% | |
| TGGAACATAGATTTGTCAAG+TGG | + | chr8_1:7759776-7759795 | None:intergenic | 35.0% | |
| GATTATAGGACATGATGCTA+TGG | - | chr8_1:7759984-7760003 | Msa1176050:CDS | 35.0% | |
| ! | CTTGAAAGATTTGGAGTTTC+AGG | - | chr8_1:7760059-7760078 | Msa1176050:CDS | 35.0% |
| GAAATGAAGAGAGCCTAATT+AGG | - | chr8_1:7760160-7760179 | Msa1176050:CDS | 35.0% | |
| TGAGAATTGCAGACCTAATT+AGG | + | chr8_1:7760176-7760195 | None:intergenic | 35.0% | |
| TCCAAACCCAATCCGAAAAT+TGG | - | chr8_1:7759279-7759298 | Msa1176050:CDS | 40.0% | |
| CCAAACCCAATCCGAAAATT+GGG | - | chr8_1:7759280-7759299 | Msa1176050:CDS | 40.0% | |
| ! | CATAGACCCAATTTTCGGAT+TGG | + | chr8_1:7759289-7759308 | None:intergenic | 40.0% |
| !!! | ATTGGGTCTATGCCATTTTG+TGG | - | chr8_1:7759297-7759316 | Msa1176050:CDS | 40.0% |
| ! | GTACAAATGGTGATGCTGAA+TGG | - | chr8_1:7759429-7759448 | Msa1176050:intron | 40.0% |
| TCGATTACACCGTTAGTTGT+CGG | + | chr8_1:7759638-7759657 | None:intergenic | 40.0% | |
| TTCTGAGTTAGATTCTGACG+AGG | + | chr8_1:7759732-7759751 | None:intergenic | 40.0% | |
| ! | AGATTTGTCAAGTGGGTTTG+TGG | + | chr8_1:7759768-7759787 | None:intergenic | 40.0% |
| CACTCATTAATCGTGCACTA+GGG | + | chr8_1:7760038-7760057 | None:intergenic | 40.0% | |
| ACACTCATTAATCGTGCACT+AGG | + | chr8_1:7760039-7760058 | None:intergenic | 40.0% | |
| TCCAAACCCAATCCGAAAAT+TGG | - | chr8_1:7759279-7759298 | Msa1176050:CDS | 40.0% | |
| CCAAACCCAATCCGAAAATT+GGG | - | chr8_1:7759280-7759299 | Msa1176050:CDS | 40.0% | |
| ! | CATAGACCCAATTTTCGGAT+TGG | + | chr8_1:7759289-7759308 | None:intergenic | 40.0% |
| !!! | ATTGGGTCTATGCCATTTTG+TGG | - | chr8_1:7759297-7759316 | Msa1176050:CDS | 40.0% |
| ! | GTACAAATGGTGATGCTGAA+TGG | - | chr8_1:7759429-7759448 | Msa1176050:intron | 40.0% |
| TCGATTACACCGTTAGTTGT+CGG | + | chr8_1:7759638-7759657 | None:intergenic | 40.0% | |
| TTCTGAGTTAGATTCTGACG+AGG | + | chr8_1:7759732-7759751 | None:intergenic | 40.0% | |
| ! | AGATTTGTCAAGTGGGTTTG+TGG | + | chr8_1:7759768-7759787 | None:intergenic | 40.0% |
| CACTCATTAATCGTGCACTA+GGG | + | chr8_1:7760038-7760057 | None:intergenic | 40.0% | |
| ACACTCATTAATCGTGCACT+AGG | + | chr8_1:7760039-7760058 | None:intergenic | 40.0% | |
| TGTTGAAGGGTTAGGGTTTG+TGG | + | chr8_1:7759242-7759261 | None:intergenic | 45.0% | |
| !! | CCCAATTTTCGGATTGGGTT+TGG | + | chr8_1:7759283-7759302 | None:intergenic | 45.0% |
| CCTTCACCCCAAGATAAGAA+AGG | + | chr8_1:7759350-7759369 | None:intergenic | 45.0% | |
| CCTTTCTTATCTTGGGGTGA+AGG | - | chr8_1:7759347-7759366 | Msa1176050:CDS | 45.0% | |
| GACAGCAACACGTGTACAAA+TGG | - | chr8_1:7759416-7759435 | Msa1176050:intron | 45.0% | |
| TTCCAAACATTCGCCGACAT+CGG | - | chr8_1:7759791-7759810 | Msa1176050:CDS | 45.0% | |
| TGTCTCATCAGTGTCTTCTC+CGG | + | chr8_1:7759831-7759850 | None:intergenic | 45.0% | |
| TGTTGAAGGGTTAGGGTTTG+TGG | + | chr8_1:7759242-7759261 | None:intergenic | 45.0% | |
| !! | CCCAATTTTCGGATTGGGTT+TGG | + | chr8_1:7759283-7759302 | None:intergenic | 45.0% |
| CCTTCACCCCAAGATAAGAA+AGG | + | chr8_1:7759350-7759369 | None:intergenic | 45.0% | |
| CCTTTCTTATCTTGGGGTGA+AGG | - | chr8_1:7759347-7759366 | Msa1176050:CDS | 45.0% | |
| GACAGCAACACGTGTACAAA+TGG | - | chr8_1:7759416-7759435 | Msa1176050:intron | 45.0% | |
| TTCCAAACATTCGCCGACAT+CGG | - | chr8_1:7759791-7759810 | Msa1176050:CDS | 45.0% | |
| TGTCTCATCAGTGTCTTCTC+CGG | + | chr8_1:7759831-7759850 | None:intergenic | 45.0% | |
| GGGTTAGGGTTTGTGGTGAA+GGG | + | chr8_1:7759235-7759254 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTTGTGGTGA+AGG | + | chr8_1:7759236-7759255 | None:intergenic | 50.0% | |
| ! | TGGGGTGAAGGCTATTTCCA+AGG | - | chr8_1:7759359-7759378 | Msa1176050:CDS | 50.0% |
| TCCAATGAAGCACACGTGCA+TGG | - | chr8_1:7759590-7759609 | Msa1176050:CDS | 50.0% | |
| TCCATGCACGTGTGCTTCAT+TGG | + | chr8_1:7759594-7759613 | None:intergenic | 50.0% | |
| TACCGATGTCGGCGAATGTT+TGG | + | chr8_1:7759796-7759815 | None:intergenic | 50.0% | |
| ACCGGAAACGATACCGATGT+CGG | + | chr8_1:7759807-7759826 | None:intergenic | 50.0% | |
| ATCGGTATCGTTTCCGGTTC+CGG | - | chr8_1:7759809-7759828 | Msa1176050:CDS | 50.0% | |
| ATCAGTGTCTTCTCCGGAAC+CGG | + | chr8_1:7759825-7759844 | None:intergenic | 50.0% | |
| GGGTTAGGGTTTGTGGTGAA+GGG | + | chr8_1:7759235-7759254 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTTGTGGTGA+AGG | + | chr8_1:7759236-7759255 | None:intergenic | 50.0% | |
| ! | TGGGGTGAAGGCTATTTCCA+AGG | - | chr8_1:7759359-7759378 | Msa1176050:CDS | 50.0% |
| TCCAATGAAGCACACGTGCA+TGG | - | chr8_1:7759590-7759609 | Msa1176050:CDS | 50.0% | |
| TCCATGCACGTGTGCTTCAT+TGG | + | chr8_1:7759594-7759613 | None:intergenic | 50.0% | |
| TACCGATGTCGGCGAATGTT+TGG | + | chr8_1:7759796-7759815 | None:intergenic | 50.0% | |
| ACCGGAAACGATACCGATGT+CGG | + | chr8_1:7759807-7759826 | None:intergenic | 50.0% | |
| ATCGGTATCGTTTCCGGTTC+CGG | - | chr8_1:7759809-7759828 | Msa1176050:CDS | 50.0% | |
| ATCAGTGTCTTCTCCGGAAC+CGG | + | chr8_1:7759825-7759844 | None:intergenic | 50.0% | |
| GCCGACATCGGTATCGTTTC+CGG | - | chr8_1:7759803-7759822 | Msa1176050:CDS | 55.0% | |
| GCCGACATCGGTATCGTTTC+CGG | - | chr8_1:7759803-7759822 | Msa1176050:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 7759179 | 7760206 | 7759179 | ID=Msa1176050;Name=Msa1176050 |
| chr8_1 | mRNA | 7759179 | 7760206 | 7759179 | ID=Msa1176050-mRNA-1;Parent=Msa1176050;Name=Msa1176050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|289 |
| chr8_1 | exon | 7759573 | 7760206 | 7759573 | ID=Msa1176050-mRNA-1:exon:2778;Parent=Msa1176050-mRNA-1 |
| chr8_1 | exon | 7759179 | 7759414 | 7759179 | ID=Msa1176050-mRNA-1:exon:2777;Parent=Msa1176050-mRNA-1 |
| chr8_1 | CDS | 7759573 | 7760206 | 7759573 | ID=Msa1176050-mRNA-1:cds;Parent=Msa1176050-mRNA-1 |
| chr8_1 | CDS | 7759179 | 7759414 | 7759179 | ID=Msa1176050-mRNA-1:cds;Parent=Msa1176050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
