Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616760 | XP_039684492.1 | 94.615 | 130 | 5 | 1 | 2 | 131 | 4 | 131 | 1.27e-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616760 | sp|Q8LBM2|TIF5A_ARATH | 43.750 | 128 | 66 | 4 | 1 | 124 | 3 | 128 | 7.25e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0616760 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616760 | Msa0836850 | 0.811811 | 5.808152e-51 | -8.615850e-47 |
| Msa0616760 | Msa1176050 | 0.804817 | 1.800827e-49 | -8.615850e-47 |
| Msa0616760 | Msa1307210 | 0.825298 | 5.059641e-54 | -8.615850e-47 |
| Msa0616760 | Msa1321050 | 0.841329 | 5.075075e-58 | -8.615850e-47 |
| Msa0616760 | Msa1379700 | 0.800262 | 1.564977e-48 | -8.615850e-47 |
| Msa0562760 | Msa0616760 | 0.869117 | 3.938112e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616760 | MtrunA17_Chr8g0376421 | 94.615 | 130 | 5 | 1 | 2 | 131 | 4 | 131 | 1.17e-86 | 248 |
| Msa0616760 | MtrunA17_Chr2g0285821 | 51.799 | 139 | 46 | 6 | 1 | 124 | 1 | 133 | 1.42e-34 | 116 |
| Msa0616760 | MtrunA17_Chr8g0393051 | 50.781 | 128 | 46 | 5 | 1 | 123 | 1 | 116 | 4.15e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616760 | AT1G30135.1 | 43.750 | 128 | 66 | 4 | 1 | 124 | 3 | 128 | 7.37e-22 | 84.7 |
| Msa0616760 | AT2G34600.1 | 36.567 | 134 | 67 | 7 | 1 | 124 | 20 | 145 | 6.87e-11 | 56.6 |
Find 35 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTATGCCCATTGTTTA+AGG | 0.167289 | 4_2:+66881949 | Msa0616760:three_prime_UTR |
| GGATCCGATTCTTCCTCTTT+TGG | 0.271098 | 4_2:-66881738 | None:intergenic |
| GATGGTAAGGGGATGCTTCT+TGG | 0.306644 | 4_2:-66881759 | None:intergenic |
| GAGTGATGCCACTGAGATTC+AGG | 0.316546 | 4_2:+66879813 | Msa0616760:CDS |
| TTCACTGTTCATAACTCTCT+TGG | 0.398248 | 4_2:+66879489 | Msa0616760:five_prime_UTR |
| TCTTCTCATTTATCTTAAGA+TGG | 0.423225 | 4_2:-66881777 | None:intergenic |
| AAGATCATCATCAGCAATAC+AGG | 0.430017 | 4_2:+66879755 | Msa0616760:CDS |
| TCATTTATCTTAAGATGGTA+AGG | 0.430837 | 4_2:-66881772 | None:intergenic |
| CGTGGGACAAATATCAGAAA+TGG | 0.434500 | 4_2:-66879562 | None:intergenic |
| AATATTAAACCTTAAACAAT+GGG | 0.440398 | 4_2:-66881958 | None:intergenic |
| TTCTCCAAAAGAGGAAGAAT+CGG | 0.449821 | 4_2:+66881734 | Msa0616760:CDS |
| GAAATGGTGAGGACACCAAC+TGG | 0.450322 | 4_2:+66881625 | Msa0616760:CDS |
| AAATATTAAACCTTAAACAA+TGG | 0.454258 | 4_2:-66881959 | None:intergenic |
| TGCTGATGATGATCTTCTTG+TGG | 0.467687 | 4_2:-66879748 | None:intergenic |
| TGAAAGATACACTAGTATAT+AGG | 0.468122 | 4_2:-66881853 | None:intergenic |
| TTAAACACTGATGGTGAAGA+TGG | 0.468624 | 4_2:-66881661 | None:intergenic |
| TGCAGAGGTTTCTCCAAAAG+AGG | 0.484466 | 4_2:+66881725 | Msa0616760:CDS |
| CTAGTGTATCTTTCAACAAA+GGG | 0.494852 | 4_2:+66881861 | Msa0616760:three_prime_UTR |
| GATGAAGAAGAATTTGAACT+TGG | 0.504115 | 4_2:+66879518 | Msa0616760:exon |
| CCGTTGACCATTGTCTATGA+TGG | 0.521959 | 4_2:+66879778 | Msa0616760:CDS |
| CATTTATCTTAAGATGGTAA+GGG | 0.531668 | 4_2:-66881771 | None:intergenic |
| TGCATGGAAAGAGAAGTACT+AGG | 0.548727 | 4_2:-66881694 | None:intergenic |
| TGCAAGCATTAAAATGGACC+TGG | 0.550717 | 4_2:-66881596 | None:intergenic |
| CTATATAAATTAAACACTGA+TGG | 0.565406 | 4_2:-66881670 | None:intergenic |
| ACTAGTGTATCTTTCAACAA+AGG | 0.570785 | 4_2:+66881860 | Msa0616760:three_prime_UTR |
| GCATGGAAAGAGAAGTACTA+GGG | 0.573020 | 4_2:-66881693 | None:intergenic |
| ATTTATCTTAAGATGGTAAG+GGG | 0.589050 | 4_2:-66881770 | None:intergenic |
| CAAATATCAGAAATGGAAGG+AGG | 0.629749 | 4_2:-66879555 | None:intergenic |
| AATCTTGCCATCATAGACAA+TGG | 0.643141 | 4_2:-66879785 | None:intergenic |
| TTATGAACAGTGAAGTGTTG+TGG | 0.644716 | 4_2:-66879480 | None:intergenic |
| CCATCATAGACAATGGTCAA+CGG | 0.652322 | 4_2:-66879778 | None:intergenic |
| GGCTCTGATGATGATCCAGT+TGG | 0.655026 | 4_2:-66881640 | None:intergenic |
| GGACAAATATCAGAAATGGA+AGG | 0.658341 | 4_2:-66879558 | None:intergenic |
| GAACAGTGAAGTGTTGTGGA+CGG | 0.712661 | 4_2:-66879476 | None:intergenic |
| AACACAAACCTGAATCTCAG+TGG | 0.717414 | 4_2:-66879821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTAAAATA+TGG | + | chr4_2:66880216-66880235 | Msa0616760:intron | 0.0% |
| !!! | TTTTTATAAAAGTTTTTTGA+GGG | - | chr4_2:66879931-66879950 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAAAGTTTTTTG+AGG | - | chr4_2:66879932-66879951 | None:intergenic | 10.0% |
| !! | ATAAAATTAATGCAAAATAT+GGG | - | chr4_2:66880550-66880569 | None:intergenic | 10.0% |
| !! | AATAAAATTAATGCAAAATA+TGG | - | chr4_2:66880551-66880570 | None:intergenic | 10.0% |
| !! | AATAAATACAATTAATTGAA+AGG | - | chr4_2:66880737-66880756 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTGAATTTTTTTT+GGG | + | chr4_2:66881161-66881180 | Msa0616760:intron | 10.0% |
| !! | ACAATAATTTGAATTAAAAT+TGG | + | chr4_2:66881528-66881547 | Msa0616760:intron | 10.0% |
| !!! | ATTTTATTTCACATATAACA+AGG | - | chr4_2:66879615-66879634 | None:intergenic | 15.0% |
| !! | TAAAATTAACATGTAATACT+TGG | + | chr4_2:66879629-66879648 | Msa0616760:intron | 15.0% |
| !! | AAAATTAACATGTAATACTT+GGG | + | chr4_2:66879630-66879649 | Msa0616760:intron | 15.0% |
| !! | TAAAATTAATGCAAAATATG+GGG | - | chr4_2:66880549-66880568 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTTCTACTG+TGG | + | chr4_2:66880559-66880578 | Msa0616760:intron | 15.0% |
| !! | GCTAAAAATTTAGTAATAAA+GGG | + | chr4_2:66880924-66880943 | Msa0616760:intron | 15.0% |
| !! | AAAGATATAAAAAAATCAGT+AGG | + | chr4_2:66881010-66881029 | Msa0616760:intron | 15.0% |
| !! | CAAAAAAAATTCAAAAAACA+TGG | - | chr4_2:66881162-66881181 | None:intergenic | 15.0% |
| !!! | CATGTTTTTTGAATTTTTTT+TGG | + | chr4_2:66881160-66881179 | Msa0616760:intron | 15.0% |
| !! | AATATTAAACCTTAAACAAT+GGG | - | chr4_2:66881961-66881980 | None:intergenic | 15.0% |
| !! | AAATATTAAACCTTAAACAA+TGG | - | chr4_2:66881962-66881981 | None:intergenic | 15.0% |
| !! | ATTAAAAGAGAGAAGATAAA+TGG | - | chr4_2:66880375-66880394 | None:intergenic | 20.0% |
| !! | ACATAGATTTCGAAAAATAA+TGG | + | chr4_2:66880440-66880459 | Msa0616760:intron | 20.0% |
| !! | ATTCAATTAAAACACTAGTA+GGG | - | chr4_2:66880628-66880647 | None:intergenic | 20.0% |
| !! | TATTCAATTAAAACACTAGT+AGG | - | chr4_2:66880629-66880648 | None:intergenic | 20.0% |
| !! | GCTAAAAATTTAGTCATAAA+GGG | + | chr4_2:66880887-66880906 | Msa0616760:intron | 20.0% |
| !! | GGCTAAAAATTTAGTAATAA+AGG | + | chr4_2:66880923-66880942 | Msa0616760:intron | 20.0% |
| !!! | TTTTGTAGTTTGCATTTATA+AGG | - | chr4_2:66880956-66880975 | None:intergenic | 20.0% |
| !! | TATAAATGCAAACTACAAAA+TGG | + | chr4_2:66880956-66880975 | Msa0616760:intron | 20.0% |
| !!! | TAAATTAAAGTTTCCTCTTT+TGG | - | chr4_2:66881226-66881245 | None:intergenic | 20.0% |
| !! | AAAAAAAGGAAAATGTTAAC+CGG | - | chr4_2:66881343-66881362 | None:intergenic | 20.0% |
| !! | GAATAGCTATAATAAATAGT+GGG | - | chr4_2:66881460-66881479 | None:intergenic | 20.0% |
| !! | TGAATAGCTATAATAAATAG+TGG | - | chr4_2:66881461-66881480 | None:intergenic | 20.0% |
| !!! | TCAAATTATTGTTGATGATA+AGG | - | chr4_2:66881520-66881539 | None:intergenic | 20.0% |
| !! | TTAAAATTGGAATTAAGTAG+TGG | + | chr4_2:66881541-66881560 | Msa0616760:intron | 20.0% |
| !! | TAAAATTGGAATTAAGTAGT+GGG | + | chr4_2:66881542-66881561 | Msa0616760:intron | 20.0% |
| !!! | TTTTTTTGCAAGCATTAAAA+TGG | - | chr4_2:66881605-66881624 | None:intergenic | 20.0% |
| !! | CTATATAAATTAAACACTGA+TGG | - | chr4_2:66881673-66881692 | None:intergenic | 20.0% |
| !!! | CAATTTTTTAGTTGATGTTT+TGG | + | chr4_2:66881921-66881940 | Msa0616760:three_prime_UTR | 20.0% |
| !! | TTTTCAAAAAATGCATATGC+AGG | + | chr4_2:66880131-66880150 | Msa0616760:intron | 25.0% |
| !!! | TCTTCTCTCTTTTAATTAAG+AGG | + | chr4_2:66880379-66880398 | Msa0616760:intron | 25.0% |
| !!! | CTTCTCTCTTTTAATTAAGA+GGG | + | chr4_2:66880380-66880399 | Msa0616760:intron | 25.0% |
| ! | TAGATTTCGAAAAATAATGG+AGG | + | chr4_2:66880443-66880462 | Msa0616760:intron | 25.0% |
| ! | ATATATGCAATAGACAATAG+TGG | - | chr4_2:66880488-66880507 | None:intergenic | 25.0% |
| ! | TTCAATTAAAACACTAGTAG+GGG | - | chr4_2:66880627-66880646 | None:intergenic | 25.0% |
| !!! | CAATTAATTGAAAGGCATTT+TGG | - | chr4_2:66880729-66880748 | None:intergenic | 25.0% |
| ! | GACATTCATCTTATAATCTT+TGG | - | chr4_2:66880842-66880861 | None:intergenic | 25.0% |
| ! | GGCTAAAAATTTAGTCATAA+AGG | + | chr4_2:66880886-66880905 | Msa0616760:intron | 25.0% |
| ! | ATAAAGGGTAAATTCCTTAT+GGG | + | chr4_2:66880902-66880921 | Msa0616760:intron | 25.0% |
| !!! | TACTAAATTTTTAGCCCATA+AGG | - | chr4_2:66880919-66880938 | None:intergenic | 25.0% |
| ! | TTTATATCTTTCGTTTGTCT+TGG | - | chr4_2:66881001-66881020 | None:intergenic | 25.0% |
| ! | GATATAAAAAAATCAGTAGG+CGG | + | chr4_2:66881013-66881032 | Msa0616760:intron | 25.0% |
| !! | ATTTGTTGACCTCAAAATTT+GGG | + | chr4_2:66881103-66881122 | Msa0616760:intron | 25.0% |
| ! | ACTGGTTAATGAATCAAATA+TGG | - | chr4_2:66881308-66881327 | None:intergenic | 25.0% |
| ! | TTAAAATAATAGCATCATCG+AGG | + | chr4_2:66881422-66881441 | Msa0616760:intron | 25.0% |
| ! | AAAATTGGAATTAAGTAGTG+GGG | + | chr4_2:66881543-66881562 | Msa0616760:intron | 25.0% |
| ! | AATGCTTGCAAAAAAAGAAA+TGG | + | chr4_2:66881609-66881628 | Msa0616760:CDS | 25.0% |
| ! | ATTTATCTTAAGATGGTAAG+GGG | - | chr4_2:66881773-66881792 | None:intergenic | 25.0% |
| ! | CATTTATCTTAAGATGGTAA+GGG | - | chr4_2:66881774-66881793 | None:intergenic | 25.0% |
| ! | TCATTTATCTTAAGATGGTA+AGG | - | chr4_2:66881775-66881794 | None:intergenic | 25.0% |
| ! | TCTTCTCATTTATCTTAAGA+TGG | - | chr4_2:66881780-66881799 | None:intergenic | 25.0% |
| ! | TGAAAGATACACTAGTATAT+AGG | - | chr4_2:66881856-66881875 | None:intergenic | 25.0% |
| GATGAAGAAGAATTTGAACT+TGG | + | chr4_2:66879518-66879537 | Msa0616760:exon | 30.0% | |
| AAAGAAGAAGAAGAAGAAGA+AGG | + | chr4_2:66879718-66879737 | Msa0616760:CDS | 30.0% | |
| ATGCAATAGTGTACATGATA+TGG | - | chr4_2:66880061-66880080 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGAGTAATCCGTTT+TGG | + | chr4_2:66880268-66880287 | Msa0616760:intron | 30.0% |
| TTGAATGAAAGTTTGGTTGA+GGG | - | chr4_2:66880336-66880355 | None:intergenic | 30.0% | |
| TTTGAATGAAAGTTTGGTTG+AGG | - | chr4_2:66880337-66880356 | None:intergenic | 30.0% | |
| AGAGAGTTTGAATGAAAGTT+TGG | - | chr4_2:66880343-66880362 | None:intergenic | 30.0% | |
| TCAATTAAAACACTAGTAGG+GGG | - | chr4_2:66880626-66880645 | None:intergenic | 30.0% | |
| !!! | ATTGAAAGGCATTTTGGAAT+AGG | - | chr4_2:66880723-66880742 | None:intergenic | 30.0% |
| ! | CTTTTTCTCACTTGTCTTTT+AGG | - | chr4_2:66880867-66880886 | None:intergenic | 30.0% |
| CTAAAAGACAAGTGAGAAAA+AGG | + | chr4_2:66880865-66880884 | Msa0616760:intron | 30.0% | |
| CATAAAGGGTAAATTCCTTA+TGG | + | chr4_2:66880901-66880920 | Msa0616760:intron | 30.0% | |
| ATGCAATGCATTTGGAAATT+TGG | - | chr4_2:66881079-66881098 | None:intergenic | 30.0% | |
| AAATGAGTATGCAATGCATT+TGG | - | chr4_2:66881087-66881106 | None:intergenic | 30.0% | |
| ! | CATTTGTTGACCTCAAAATT+TGG | + | chr4_2:66881102-66881121 | Msa0616760:intron | 30.0% |
| !!! | TTTTTTTGGGTCTTGTTAAC+CGG | + | chr4_2:66881174-66881193 | Msa0616760:intron | 30.0% |
| ATGTGAATCGTATATATTGC+AGG | + | chr4_2:66881573-66881592 | Msa0616760:intron | 30.0% | |
| TTGCAAAAAAAGAAATGGTG+AGG | + | chr4_2:66881614-66881633 | Msa0616760:CDS | 30.0% | |
| ACTAGTGTATCTTTCAACAA+AGG | + | chr4_2:66881860-66881879 | Msa0616760:three_prime_UTR | 30.0% | |
| CTAGTGTATCTTTCAACAAA+GGG | + | chr4_2:66881861-66881880 | Msa0616760:three_prime_UTR | 30.0% | |
| !! | TTATGAACAGTGAAGTGTTG+TGG | - | chr4_2:66879483-66879502 | None:intergenic | 35.0% |
| TTCACTGTTCATAACTCTCT+TGG | + | chr4_2:66879489-66879508 | Msa0616760:five_prime_UTR | 35.0% | |
| CAAATATCAGAAATGGAAGG+AGG | - | chr4_2:66879558-66879577 | None:intergenic | 35.0% | |
| GGACAAATATCAGAAATGGA+AGG | - | chr4_2:66879561-66879580 | None:intergenic | 35.0% | |
| AAGATCATCATCAGCAATAC+AGG | + | chr4_2:66879755-66879774 | Msa0616760:CDS | 35.0% | |
| AATCTTGCCATCATAGACAA+TGG | - | chr4_2:66879788-66879807 | None:intergenic | 35.0% | |
| CGGATTACTCAAAAAACGTT+TGG | - | chr4_2:66880265-66880284 | None:intergenic | 35.0% | |
| GAGAACAGATTTCTCCAAAA+CGG | - | chr4_2:66880285-66880304 | None:intergenic | 35.0% | |
| CTCTAAATCAACTACCTACA+AGG | - | chr4_2:66880307-66880326 | None:intergenic | 35.0% | |
| ! | CTTGTAGGTAGTTGATTTAG+AGG | + | chr4_2:66880305-66880324 | Msa0616760:intron | 35.0% |
| TGGAGGATAGTTTGATTAAG+AGG | + | chr4_2:66880460-66880479 | Msa0616760:intron | 35.0% | |
| ATGCAAAATATGGGGAAAAG+TGG | - | chr4_2:66880541-66880560 | None:intergenic | 35.0% | |
| ! | ATAGTTGTGCCCAAATTTTG+AGG | - | chr4_2:66881115-66881134 | None:intergenic | 35.0% |
| ! | TAAGGTGAGTTGAAAAAGAG+AGG | - | chr4_2:66881391-66881410 | None:intergenic | 35.0% |
| ! | TTAAACACTGATGGTGAAGA+TGG | - | chr4_2:66881664-66881683 | None:intergenic | 35.0% |
| TTCTCCAAAAGAGGAAGAAT+CGG | + | chr4_2:66881734-66881753 | Msa0616760:CDS | 35.0% | |
| CAGTTTATGCCCATTGTTTA+AGG | + | chr4_2:66881949-66881968 | Msa0616760:three_prime_UTR | 35.0% | |
| CGTGGGACAAATATCAGAAA+TGG | - | chr4_2:66879565-66879584 | None:intergenic | 40.0% | |
| TGTAATACTTGGGACATACG+TGG | + | chr4_2:66879640-66879659 | Msa0616760:intron | 40.0% | |
| !! | GGACATACGTGGTTCTAATT+AGG | + | chr4_2:66879651-66879670 | Msa0616760:intron | 40.0% |
| ! | TGCTGATGATGATCTTCTTG+TGG | - | chr4_2:66879751-66879770 | None:intergenic | 40.0% |
| CCATCATAGACAATGGTCAA+CGG | - | chr4_2:66879781-66879800 | None:intergenic | 40.0% | |
| AACACAAACCTGAATCTCAG+TGG | - | chr4_2:66879824-66879843 | None:intergenic | 40.0% | |
| ! | AACGTTTGGTGACTTTCAAG+AGG | - | chr4_2:66880251-66880270 | None:intergenic | 40.0% |
| GAGAAATCTGTTCTCCTTGT+AGG | + | chr4_2:66880290-66880309 | Msa0616760:intron | 40.0% | |
| ATCTGAACTGTCCTTGTGAA+TGG | + | chr4_2:66881041-66881060 | Msa0616760:intron | 40.0% | |
| ATTCATTAACCAGTGCCTCT+GGG | + | chr4_2:66881314-66881333 | Msa0616760:intron | 40.0% | |
| AATCGTATATATTGCAGGCC+AGG | + | chr4_2:66881578-66881597 | Msa0616760:intron | 40.0% | |
| TGCAAGCATTAAAATGGACC+TGG | - | chr4_2:66881599-66881618 | None:intergenic | 40.0% | |
| !! | GCATGGAAAGAGAAGTACTA+GGG | - | chr4_2:66881696-66881715 | None:intergenic | 40.0% |
| !! | TGCATGGAAAGAGAAGTACT+AGG | - | chr4_2:66881697-66881716 | None:intergenic | 40.0% |
| !! | GAACAGTGAAGTGTTGTGGA+CGG | - | chr4_2:66879479-66879498 | None:intergenic | 45.0% |
| GACGAAGAAGATGCTTACGT+GGG | - | chr4_2:66879582-66879601 | None:intergenic | 45.0% | |
| AGACGAAGAAGATGCTTACG+TGG | - | chr4_2:66879583-66879602 | None:intergenic | 45.0% | |
| CCGTTGACCATTGTCTATGA+TGG | + | chr4_2:66879778-66879797 | Msa0616760:CDS | 45.0% | |
| !! | TGCAGGTCTTATTGCACATG+TGG | + | chr4_2:66880148-66880167 | Msa0616760:intron | 45.0% |
| CAGCATTCACTCCATTCACA+AGG | - | chr4_2:66881055-66881074 | None:intergenic | 45.0% | |
| CTTGTGAATGGAGTGAATGC+TGG | + | chr4_2:66881053-66881072 | Msa0616760:intron | 45.0% | |
| CTGGTTAAGGAAGCCAAAAG+AGG | + | chr4_2:66881210-66881229 | Msa0616760:intron | 45.0% | |
| GATTCATTAACCAGTGCCTC+TGG | + | chr4_2:66881313-66881332 | Msa0616760:intron | 45.0% | |
| TTCATTAACCAGTGCCTCTG+GGG | + | chr4_2:66881315-66881334 | Msa0616760:intron | 45.0% | |
| ! | CCTCTGCAACGATTTTTGCA+TGG | - | chr4_2:66881713-66881732 | None:intergenic | 45.0% |
| CCATGCAAAAATCGTTGCAG+AGG | + | chr4_2:66881710-66881729 | Msa0616760:CDS | 45.0% | |
| TGCAGAGGTTTCTCCAAAAG+AGG | + | chr4_2:66881725-66881744 | Msa0616760:CDS | 45.0% | |
| ! | GGATCCGATTCTTCCTCTTT+TGG | - | chr4_2:66881741-66881760 | None:intergenic | 45.0% |
| !! | GAATAAAAAAAAAAAAAAAA+AGG | - | chr4_2:66881357-66881376 | None:intergenic | 5.0% |
| !!! | ATTTTAATTTTGATATATTA+AGG | - | chr4_2:66881409-66881428 | None:intergenic | 5.0% |
| GAGTGATGCCACTGAGATTC+AGG | + | chr4_2:66879813-66879832 | Msa0616760:CDS | 50.0% | |
| GAAATGGTGAGGACACCAAC+TGG | + | chr4_2:66881625-66881644 | Msa0616760:CDS | 50.0% | |
| ! | GGCTCTGATGATGATCCAGT+TGG | - | chr4_2:66881643-66881662 | None:intergenic | 50.0% |
| GATGGTAAGGGGATGCTTCT+TGG | - | chr4_2:66881762-66881781 | None:intergenic | 50.0% | |
| ! | GTCTTGTTAACCGGTGTCCC+CGG | + | chr4_2:66881183-66881202 | Msa0616760:intron | 55.0% |
| CTTCCTTAACCAGTGCTCCG+GGG | - | chr4_2:66881203-66881222 | None:intergenic | 55.0% | |
| GCTTCCTTAACCAGTGCTCC+GGG | - | chr4_2:66881204-66881223 | None:intergenic | 55.0% | |
| GGCTTCCTTAACCAGTGCTC+CGG | - | chr4_2:66881205-66881224 | None:intergenic | 55.0% | |
| AATGTTAACCGGTGCCCCAG+AGG | - | chr4_2:66881332-66881351 | None:intergenic | 55.0% | |
| !! | TGTCCCCGGAGCACTGGTTA+AGG | + | chr4_2:66881197-66881216 | Msa0616760:intron | 60.0% |
| AACCAGTGCTCCGGGGACAC+CGG | - | chr4_2:66881196-66881215 | None:intergenic | 65.0% | |
| !! | AACCAGTGCCTCTGGGGCAC+CGG | + | chr4_2:66881321-66881340 | Msa0616760:intron | 65.0% |
| AACCGGTGTCCCCGGAGCAC+TGG | + | chr4_2:66881191-66881210 | Msa0616760:intron | 70.0% | |
| ! | AACCGGTGCCCCAGAGGCAC+TGG | - | chr4_2:66881326-66881345 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66879451 | 66881981 | 66879451 | ID=Msa0616760;Name=Msa0616760 |
| chr4_2 | mRNA | 66879451 | 66881981 | 66879451 | ID=Msa0616760-mRNA-1;Parent=Msa0616760;Name=Msa0616760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=68|1|1|1|1|1|3|177|131 |
| chr4_2 | exon | 66879451 | 66879583 | 66879451 | ID=Msa0616760-mRNA-1:exon:19041;Parent=Msa0616760-mRNA-1 |
| chr4_2 | exon | 66879714 | 66879834 | 66879714 | ID=Msa0616760-mRNA-1:exon:19042;Parent=Msa0616760-mRNA-1 |
| chr4_2 | exon | 66881595 | 66881981 | 66881595 | ID=Msa0616760-mRNA-1:exon:19043;Parent=Msa0616760-mRNA-1 |
| chr4_2 | five_prime_UTR | 66879451 | 66879518 | 66879451 | ID=Msa0616760-mRNA-1:five_prime_utr;Parent=Msa0616760-mRNA-1 |
| chr4_2 | CDS | 66879519 | 66879583 | 66879519 | ID=Msa0616760-mRNA-1:cds;Parent=Msa0616760-mRNA-1 |
| chr4_2 | CDS | 66879714 | 66879834 | 66879714 | ID=Msa0616760-mRNA-1:cds;Parent=Msa0616760-mRNA-1 |
| chr4_2 | CDS | 66881595 | 66881804 | 66881595 | ID=Msa0616760-mRNA-1:cds;Parent=Msa0616760-mRNA-1 |
| chr4_2 | three_prime_UTR | 66881805 | 66881981 | 66881805 | ID=Msa0616760-mRNA-1:three_prime_utr;Parent=Msa0616760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
