Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563030 | XP_013446512.1 | 94.053 | 454 | 24 | 2 | 1 | 452 | 1 | 453 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563030 | sp|A0A2P1GIW7|SAT_CATRO | 34.793 | 434 | 233 | 13 | 2 | 417 | 4 | 405 | 2.81e-75 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563030 | A0A072TSP7 | 94.053 | 454 | 24 | 2 | 1 | 452 | 1 | 453 | 0.0 | 884 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563030 | Msa0920720 | 0.805611 | 1.228087e-49 | -8.615850e-47 |
| Msa0563030 | Msa0995440 | 0.802505 | 5.434842e-49 | -8.615850e-47 |
| Msa0563030 | Msa1406130 | 0.801344 | 9.411110e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563030 | MtrunA17_Chr8g0376891 | 94.053 | 454 | 24 | 2 | 1 | 452 | 1 | 453 | 0.0 | 884 |
| Msa0563030 | MtrunA17_Chr8g0376901 | 74.828 | 437 | 109 | 1 | 1 | 436 | 1 | 437 | 0.0 | 682 |
| Msa0563030 | MtrunA17_Chr5g0438701 | 73.469 | 441 | 108 | 4 | 1 | 439 | 1 | 434 | 0.0 | 671 |
| Msa0563030 | MtrunA17_Chr5g0438681 | 70.917 | 447 | 120 | 5 | 1 | 445 | 1 | 439 | 0.0 | 641 |
| Msa0563030 | MtrunA17_Chr8g0376911 | 57.432 | 444 | 173 | 6 | 1 | 436 | 1 | 436 | 2.12e-175 | 498 |
| Msa0563030 | MtrunA17_Chr3g0123061 | 34.803 | 431 | 254 | 10 | 1 | 426 | 3 | 411 | 4.23e-86 | 269 |
| Msa0563030 | MtrunA17_Chr2g0278481 | 34.934 | 458 | 256 | 10 | 1 | 434 | 15 | 454 | 3.18e-78 | 250 |
| Msa0563030 | MtrunA17_Chr5g0438721 | 82.203 | 118 | 21 | 0 | 56 | 173 | 6 | 123 | 1.29e-67 | 212 |
| Msa0563030 | MtrunA17_Chr8g0361771 | 31.291 | 457 | 274 | 13 | 1 | 434 | 1 | 440 | 2.19e-56 | 193 |
| Msa0563030 | MtrunA17_Chr8g0361781 | 30.921 | 456 | 277 | 13 | 1 | 434 | 1 | 440 | 1.44e-52 | 182 |
| Msa0563030 | MtrunA17_Chr1g0199561 | 29.828 | 466 | 272 | 14 | 1 | 433 | 1 | 444 | 3.21e-48 | 171 |
| Msa0563030 | MtrunA17_Chr7g0270681 | 76.250 | 80 | 19 | 0 | 42 | 121 | 6 | 85 | 3.22e-36 | 128 |
| Msa0563030 | MtrunA17_Chr5g0438711 | 67.606 | 71 | 23 | 0 | 370 | 440 | 1 | 71 | 2.89e-30 | 112 |
| Msa0563030 | MtrunA17_Chr4g0072041 | 25.110 | 454 | 296 | 16 | 2 | 422 | 13 | 455 | 7.32e-26 | 109 |
| Msa0563030 | MtrunA17_Chr8g0386141 | 25.111 | 450 | 308 | 15 | 11 | 442 | 7 | 445 | 1.29e-25 | 108 |
| Msa0563030 | MtrunA17_Chr4g0054081 | 26.077 | 441 | 261 | 17 | 25 | 420 | 29 | 449 | 2.32e-23 | 102 |
| Msa0563030 | MtrunA17_Chr5g0433641 | 25.189 | 397 | 253 | 14 | 9 | 382 | 16 | 391 | 2.92e-23 | 102 |
| Msa0563030 | MtrunA17_Chr4g0001861 | 21.394 | 416 | 292 | 12 | 27 | 420 | 25 | 427 | 2.98e-23 | 101 |
| Msa0563030 | MtrunA17_Chr1g0165671 | 23.769 | 467 | 297 | 14 | 9 | 443 | 33 | 472 | 3.63e-23 | 101 |
| Msa0563030 | MtrunA17_Chr8g0371821 | 22.857 | 420 | 265 | 17 | 36 | 423 | 34 | 426 | 1.32e-22 | 99.8 |
| Msa0563030 | MtrunA17_Chr3g0087401 | 24.889 | 450 | 266 | 20 | 3 | 404 | 2 | 427 | 2.62e-22 | 99.0 |
| Msa0563030 | MtrunA17_Chr7g0253531 | 23.125 | 480 | 276 | 22 | 3 | 420 | 2 | 450 | 4.13e-22 | 98.6 |
| Msa0563030 | MtrunA17_Chr2g0334001 | 22.090 | 421 | 299 | 10 | 1 | 404 | 1 | 409 | 9.49e-22 | 97.1 |
| Msa0563030 | MtrunA17_Chr1g0165681 | 22.581 | 403 | 268 | 14 | 2 | 382 | 8 | 388 | 1.93e-20 | 93.6 |
| Msa0563030 | MtrunA17_Chr1g0165661 | 23.077 | 403 | 252 | 13 | 9 | 382 | 15 | 388 | 2.97e-20 | 92.8 |
| Msa0563030 | MtrunA17_Chr7g0253501 | 23.779 | 471 | 284 | 19 | 3 | 420 | 2 | 450 | 1.33e-19 | 90.9 |
| Msa0563030 | MtrunA17_Chr7g0273791 | 31.977 | 172 | 99 | 6 | 9 | 169 | 16 | 180 | 3.51e-19 | 89.7 |
| Msa0563030 | MtrunA17_Chr7g0219241 | 23.922 | 464 | 291 | 16 | 8 | 419 | 12 | 465 | 7.69e-19 | 89.0 |
| Msa0563030 | MtrunA17_Chr1g0165711 | 30.481 | 187 | 112 | 6 | 2 | 177 | 8 | 187 | 9.84e-19 | 88.2 |
| Msa0563030 | MtrunA17_Chr5g0408911 | 23.326 | 433 | 277 | 16 | 2 | 404 | 17 | 424 | 1.05e-18 | 88.2 |
| Msa0563030 | MtrunA17_Chr7g0219291 | 24.138 | 435 | 274 | 15 | 16 | 404 | 367 | 791 | 8.66e-18 | 86.3 |
| Msa0563030 | MtrunA17_Chr7g0235531 | 24.834 | 451 | 282 | 17 | 3 | 419 | 4 | 431 | 9.00e-18 | 85.1 |
| Msa0563030 | MtrunA17_Chr7g0219181 | 25.546 | 458 | 271 | 15 | 3 | 404 | 8 | 451 | 4.69e-17 | 83.2 |
| Msa0563030 | MtrunA17_Chr7g0273781 | 31.395 | 172 | 100 | 6 | 9 | 169 | 49 | 213 | 1.30e-16 | 82.0 |
| Msa0563030 | MtrunA17_Chr7g0273731 | 30.636 | 173 | 100 | 7 | 9 | 169 | 99 | 263 | 2.22e-16 | 81.3 |
| Msa0563030 | MtrunA17_Chr7g0273761 | 32.184 | 174 | 97 | 8 | 9 | 169 | 388 | 553 | 3.70e-16 | 81.3 |
| Msa0563030 | MtrunA17_Chr7g0274021 | 26.048 | 334 | 206 | 11 | 2 | 312 | 7 | 322 | 5.97e-16 | 79.7 |
| Msa0563030 | MtrunA17_Chr7g0253541 | 22.391 | 460 | 290 | 20 | 1 | 412 | 2 | 442 | 3.45e-15 | 77.4 |
| Msa0563030 | MtrunA17_Chr5g0442701 | 24.654 | 434 | 243 | 20 | 3 | 382 | 10 | 413 | 6.48e-15 | 76.6 |
| Msa0563030 | MtrunA17_Chr7g0252731 | 25.366 | 410 | 245 | 17 | 26 | 411 | 38 | 410 | 1.13e-14 | 75.9 |
| Msa0563030 | MtrunA17_Chr4g0010121 | 25.641 | 429 | 257 | 18 | 2 | 393 | 42 | 445 | 1.73e-14 | 75.5 |
| Msa0563030 | MtrunA17_Chr5g0442691 | 25.000 | 432 | 244 | 21 | 3 | 382 | 33 | 436 | 2.54e-14 | 75.1 |
| Msa0563030 | MtrunA17_Chr8g0353421 | 35.000 | 120 | 64 | 5 | 9 | 121 | 15 | 127 | 1.73e-13 | 67.4 |
| Msa0563030 | MtrunA17_Chr3g0141851 | 21.700 | 447 | 280 | 18 | 10 | 421 | 19 | 430 | 3.13e-13 | 71.2 |
| Msa0563030 | MtrunA17_Chr4g0053091 | 22.886 | 402 | 247 | 12 | 17 | 392 | 32 | 396 | 3.80e-13 | 71.2 |
| Msa0563030 | MtrunA17_Chr7g0270771 | 27.746 | 173 | 109 | 6 | 1 | 166 | 3 | 166 | 9.35e-13 | 68.6 |
| Msa0563030 | MtrunA17_Chr3g0132831 | 27.439 | 164 | 111 | 4 | 10 | 169 | 18 | 177 | 1.03e-12 | 69.7 |
| Msa0563030 | MtrunA17_Chr4g0004691 | 28.249 | 177 | 113 | 5 | 10 | 179 | 11 | 180 | 1.34e-12 | 66.2 |
| Msa0563030 | MtrunA17_Chr3g0134071 | 26.849 | 365 | 214 | 13 | 47 | 378 | 58 | 402 | 1.61e-12 | 69.3 |
| Msa0563030 | MtrunA17_Chr7g0219191 | 27.717 | 184 | 118 | 6 | 24 | 194 | 17 | 198 | 1.98e-12 | 66.6 |
| Msa0563030 | MtrunA17_Chr1g0148851 | 28.205 | 156 | 105 | 4 | 22 | 172 | 23 | 176 | 3.48e-12 | 68.2 |
| Msa0563030 | MtrunA17_Chr2g0298091 | 27.711 | 166 | 112 | 4 | 10 | 171 | 19 | 180 | 4.88e-12 | 67.8 |
| Msa0563030 | MtrunA17_Chr6g0471371 | 30.636 | 173 | 93 | 7 | 9 | 170 | 15 | 171 | 5.51e-12 | 64.3 |
| Msa0563030 | MtrunA17_Chr3g0095721 | 22.071 | 367 | 225 | 12 | 53 | 378 | 66 | 412 | 6.11e-12 | 67.4 |
| Msa0563030 | MtrunA17_Chr4g0053081 | 23.784 | 370 | 230 | 12 | 54 | 392 | 59 | 407 | 1.01e-11 | 66.6 |
| Msa0563030 | MtrunA17_Chr7g0273741 | 33.043 | 115 | 65 | 4 | 9 | 118 | 16 | 123 | 1.38e-11 | 62.4 |
| Msa0563030 | MtrunA17_Chr3g0134041 | 24.880 | 418 | 272 | 18 | 41 | 431 | 47 | 449 | 1.68e-11 | 65.9 |
| Msa0563030 | MtrunA17_Chr1g0165741 | 36.066 | 122 | 64 | 5 | 9 | 123 | 15 | 129 | 2.54e-11 | 61.6 |
| Msa0563030 | MtrunA17_Chr5g0442721 | 21.684 | 392 | 245 | 13 | 31 | 381 | 44 | 414 | 2.68e-11 | 65.5 |
| Msa0563030 | MtrunA17_Chr1g0191081 | 27.879 | 165 | 107 | 5 | 9 | 165 | 24 | 184 | 4.15e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563030 | AT3G26040.1 | 34.521 | 449 | 263 | 11 | 1 | 434 | 1 | 433 | 8.54e-87 | 272 |
| Msa0563030 | AT3G30280.1 | 32.450 | 453 | 271 | 12 | 1 | 434 | 4 | 440 | 1.19e-70 | 231 |
| Msa0563030 | AT5G23970.1 | 34.354 | 457 | 245 | 18 | 1 | 434 | 1 | 425 | 3.47e-69 | 226 |
| Msa0563030 | AT1G24430.1 | 31.982 | 444 | 275 | 9 | 1 | 434 | 3 | 429 | 3.59e-69 | 226 |
| Msa0563030 | AT4G15390.1 | 32.892 | 453 | 270 | 13 | 1 | 434 | 6 | 443 | 6.15e-68 | 223 |
| Msa0563030 | AT4G15390.2 | 32.892 | 453 | 270 | 13 | 1 | 434 | 6 | 443 | 6.15e-68 | 223 |
| Msa0563030 | AT1G24420.2 | 35.778 | 450 | 248 | 18 | 3 | 433 | 5 | 432 | 8.50e-66 | 218 |
| Msa0563030 | AT1G24420.1 | 35.778 | 450 | 248 | 18 | 3 | 433 | 5 | 432 | 8.50e-66 | 218 |
| Msa0563030 | AT5G47980.1 | 35.230 | 457 | 252 | 21 | 1 | 433 | 3 | 439 | 1.55e-63 | 212 |
| Msa0563030 | AT5G47950.1 | 30.682 | 440 | 279 | 12 | 1 | 434 | 4 | 423 | 1.33e-62 | 209 |
| Msa0563030 | AT4G15400.1 | 30.531 | 452 | 278 | 17 | 2 | 437 | 4 | 435 | 1.63e-45 | 164 |
| Msa0563030 | AT2G19070.1 | 26.700 | 397 | 257 | 15 | 10 | 378 | 11 | 401 | 3.88e-26 | 110 |
| Msa0563030 | AT5G41040.2 | 24.480 | 433 | 286 | 15 | 11 | 422 | 25 | 437 | 4.09e-26 | 110 |
| Msa0563030 | AT5G41040.1 | 24.884 | 430 | 288 | 16 | 11 | 422 | 41 | 453 | 5.25e-26 | 110 |
| Msa0563030 | AT5G48930.1 | 23.112 | 437 | 309 | 12 | 1 | 420 | 1 | 427 | 2.60e-25 | 108 |
| Msa0563030 | AT3G48720.1 | 24.494 | 445 | 271 | 16 | 9 | 421 | 15 | 426 | 7.07e-25 | 106 |
| Msa0563030 | AT5G63560.1 | 24.485 | 437 | 271 | 16 | 11 | 420 | 17 | 421 | 1.38e-24 | 105 |
| Msa0563030 | AT5G67150.1 | 27.332 | 461 | 287 | 19 | 2 | 431 | 4 | 447 | 5.99e-24 | 104 |
| Msa0563030 | AT1G65450.1 | 25.513 | 439 | 278 | 18 | 11 | 421 | 26 | 443 | 9.10e-21 | 94.7 |
| Msa0563030 | AT5G17540.1 | 22.799 | 443 | 295 | 19 | 9 | 424 | 15 | 437 | 2.25e-20 | 93.6 |
| Msa0563030 | AT5G57840.1 | 24.356 | 427 | 244 | 15 | 1 | 382 | 1 | 393 | 1.09e-19 | 91.7 |
| Msa0563030 | AT3G03480.1 | 24.079 | 407 | 251 | 17 | 8 | 385 | 24 | 401 | 7.62e-19 | 89.0 |
| Msa0563030 | AT1G31490.1 | 23.155 | 393 | 256 | 10 | 11 | 380 | 14 | 383 | 1.79e-18 | 87.8 |
| Msa0563030 | AT5G38130.1 | 23.844 | 411 | 260 | 16 | 1 | 380 | 22 | 410 | 2.04e-17 | 84.7 |
| Msa0563030 | AT3G50280.1 | 27.100 | 369 | 226 | 13 | 41 | 383 | 44 | 395 | 9.15e-17 | 82.8 |
| Msa0563030 | AT2G40230.1 | 23.303 | 442 | 286 | 19 | 10 | 423 | 12 | 428 | 2.89e-15 | 78.2 |
| Msa0563030 | AT5G07080.1 | 23.246 | 456 | 281 | 18 | 11 | 426 | 22 | 448 | 2.32e-14 | 75.5 |
| Msa0563030 | AT2G25150.1 | 21.702 | 470 | 298 | 21 | 9 | 435 | 19 | 461 | 4.96e-14 | 74.3 |
| Msa0563030 | AT1G32910.1 | 21.229 | 358 | 242 | 10 | 51 | 382 | 57 | 400 | 6.42e-13 | 70.9 |
| Msa0563030 | AT4G24510.1 | 22.628 | 411 | 261 | 14 | 37 | 423 | 39 | 416 | 4.65e-12 | 68.2 |
| Msa0563030 | AT3G50300.1 | 24.791 | 359 | 220 | 14 | 56 | 383 | 56 | 395 | 9.60e-12 | 67.0 |
| Msa0563030 | AT5G07860.1 | 22.857 | 420 | 264 | 16 | 2 | 385 | 7 | 402 | 6.07e-11 | 64.7 |
Find 77 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGTATGAAACAAATTT+TGG | 0.079099 | 4_1:+63337845 | Msa0563030:CDS |
| CATTGTTTGGTTCTCATCTA+TGG | 0.223033 | 4_1:+63337619 | Msa0563030:CDS |
| TTTCTTGTTAACACAAGTTC+TGG | 0.231496 | 4_1:-63337365 | None:intergenic |
| ATCATTCATGAAGTTGAAAA+TGG | 0.240127 | 4_1:-63337219 | None:intergenic |
| TAAGCGTGCGGTTTCATTAA+TGG | 0.246514 | 4_1:+63337508 | Msa0563030:CDS |
| AGTTGGTGAAGATGGTTTAA+TGG | 0.270462 | 4_1:-63336769 | None:intergenic |
| TCTTTCGCTCCAAATGTTTC+CGG | 0.286442 | 4_1:-63337722 | None:intergenic |
| TTATCCTTTCCTTTACTTGA+TGG | 0.297268 | 4_1:+63337302 | Msa0563030:CDS |
| AAAACAATGTGGTGTGTAAA+AGG | 0.299777 | 4_1:+63337387 | Msa0563030:CDS |
| GGATTGTAAAAGAAAATTAC+TGG | 0.304208 | 4_1:-63336855 | None:intergenic |
| ATTTGCATGAGTCACAAAAT+TGG | 0.329140 | 4_1:+63337185 | Msa0563030:CDS |
| AAGCGTGCGGTTTCATTAAT+GGG | 0.329440 | 4_1:+63337509 | Msa0563030:CDS |
| GGCTTTATTCCGGAAACATT+TGG | 0.337809 | 4_1:+63337713 | Msa0563030:CDS |
| TCAGTTTGGTGGCTTTATTC+CGG | 0.343438 | 4_1:+63337703 | Msa0563030:CDS |
| CCAACATGGGTCACCACATT+TGG | 0.343516 | 4_1:+63337878 | Msa0563030:CDS |
| CCACATTTGGTTGTTCTTCA+AGG | 0.355668 | 4_1:+63337891 | Msa0563030:CDS |
| TGAGAAGGAGTTGGTGAAGA+TGG | 0.365968 | 4_1:-63336777 | None:intergenic |
| AGAAGTTGCCATTGCCTTAA+GGG | 0.366760 | 4_1:-63337438 | None:intergenic |
| TTTCGGTGACTACCCTCATT+TGG | 0.374241 | 4_1:-63336876 | None:intergenic |
| CCAAAATTTGTTTCATACAT+TGG | 0.395456 | 4_1:-63337845 | None:intergenic |
| TAGAAGTTGCCATTGCCTTA+AGG | 0.400377 | 4_1:-63337439 | None:intergenic |
| ACCTTGATCATTACATTCAA+TGG | 0.407509 | 4_1:-63336985 | None:intergenic |
| AAAGAAGGGTTGTCTCAGTT+TGG | 0.420014 | 4_1:+63337689 | Msa0563030:CDS |
| TAGATCCAAATTTGCTAAGA+AGG | 0.429044 | 4_1:-63338091 | None:intergenic |
| GGTTGCAGATAAGAAGGAAA+TGG | 0.430052 | 4_1:+63337640 | Msa0563030:CDS |
| AGTGTGTAGGAAACATTGTT+TGG | 0.440474 | 4_1:+63337606 | Msa0563030:CDS |
| TGCAATGGAAAGACATGGAT+TGG | 0.442817 | 4_1:+63337102 | Msa0563030:CDS |
| TTTACTTGATGGAGGAGCTT+CGG | 0.447159 | 4_1:+63337313 | Msa0563030:CDS |
| TTAAGGGACTTGATCATTGA+GGG | 0.449780 | 4_1:-63337422 | None:intergenic |
| CCATGCTAAACGTTGTCGTC+TGG | 0.449892 | 4_1:-63337541 | None:intergenic |
| GTCTTTCCATTGCAATTCGT+CGG | 0.465193 | 4_1:-63337093 | None:intergenic |
| TCATCGTGTCCAACATTGCT+TGG | 0.469031 | 4_1:-63338037 | None:intergenic |
| AAAATAGTTAAATCCCTTTG+TGG | 0.471728 | 4_1:-63337341 | None:intergenic |
| TTCTTGTTAACACAAGTTCT+GGG | 0.473373 | 4_1:-63337364 | None:intergenic |
| ATCTATGGTTGCAGATAAGA+AGG | 0.479289 | 4_1:+63337634 | Msa0563030:CDS |
| ATGTTATCAATGAAAGAAAG+TGG | 0.481475 | 4_1:-63336813 | None:intergenic |
| AAGGAATATAATATTTCTGA+TGG | 0.482401 | 4_1:+63337910 | Msa0563030:CDS |
| GGAAATGGAATTACATGAGT+TGG | 0.483126 | 4_1:+63337655 | Msa0563030:CDS |
| CTCAATGATCAAGTCCCTTA+AGG | 0.485143 | 4_1:+63337424 | Msa0563030:CDS |
| ACCATTGAATGTAATGATCA+AGG | 0.486582 | 4_1:+63336984 | Msa0563030:CDS |
| TTGGTATCCAAAATAAAAGA+AGG | 0.489736 | 4_1:+63337674 | Msa0563030:CDS |
| TCTTTCCATTGCAATTCGTC+GGG | 0.491193 | 4_1:-63337092 | None:intergenic |
| TGCAATTCGTCGGGAAACAA+AGG | 0.499188 | 4_1:-63337083 | None:intergenic |
| GAAGGGTTGTCTCAGTTTGG+TGG | 0.507577 | 4_1:+63337692 | Msa0563030:CDS |
| AGAAAGTAATTCAATTTCCA+TGG | 0.511304 | 4_1:-63336739 | None:intergenic |
| CTTAAGGGACTTGATCATTG+AGG | 0.514752 | 4_1:-63337423 | None:intergenic |
| GGATAAATTCTGAGGTGAGA+AGG | 0.515322 | 4_1:-63336792 | None:intergenic |
| CCAGACGACAACGTTTAGCA+TGG | 0.529574 | 4_1:+63337541 | Msa0563030:CDS |
| TCCTTTCCTTTACTTGATGG+AGG | 0.542559 | 4_1:+63337305 | Msa0563030:CDS |
| TCTCTGAATCCAAGCAATGT+TGG | 0.543066 | 4_1:+63338028 | Msa0563030:CDS |
| GCAATTCGTCGGGAAACAAA+GGG | 0.544431 | 4_1:-63337082 | None:intergenic |
| GAAGCTCCTCCATCAAGTAA+AGG | 0.564523 | 4_1:-63337311 | None:intergenic |
| TCCTCCATCAAGTAAAGGAA+AGG | 0.566829 | 4_1:-63337306 | None:intergenic |
| AACATTTGGAGCGAAAGAGA+AGG | 0.568931 | 4_1:+63337727 | Msa0563030:CDS |
| ATGGATACAAGAGATGGAGA+AGG | 0.569289 | 4_1:+63337929 | Msa0563030:CDS |
| ACCTCCATCACGTGTACAAG+CGG | 0.575908 | 4_1:+63337469 | Msa0563030:CDS |
| CGAATTGCAATGGAAAGACA+TGG | 0.578701 | 4_1:+63337097 | Msa0563030:CDS |
| GATCAAGTCCCTTAAGGCAA+TGG | 0.579682 | 4_1:+63337430 | Msa0563030:CDS |
| GATTGAAGCTATTGTGAACA+TGG | 0.583035 | 4_1:+63337952 | Msa0563030:CDS |
| TTGGGTGGGGAAATCCAACA+TGG | 0.584709 | 4_1:+63337864 | Msa0563030:CDS |
| TGTTTCCCGACGAATTGCAA+TGG | 0.585354 | 4_1:+63337087 | Msa0563030:CDS |
| CCAAATGTGGTGACCCATGT+TGG | 0.586813 | 4_1:-63337878 | None:intergenic |
| TTTCTGATGGATACAAGAGA+TGG | 0.596490 | 4_1:+63337923 | Msa0563030:CDS |
| CAGACGACAACGTTTAGCAT+GGG | 0.603622 | 4_1:+63337542 | Msa0563030:CDS |
| GTGTACAAGCGGTAACTGCA+TGG | 0.607341 | 4_1:+63337480 | Msa0563030:CDS |
| GACAACGTTTAGCATGGGTG+TGG | 0.614771 | 4_1:+63337547 | Msa0563030:CDS |
| CCTTGAAGAACAACCAAATG+TGG | 0.615384 | 4_1:-63337891 | None:intergenic |
| TGGATACAAGAGATGGAGAA+GGG | 0.619465 | 4_1:+63337930 | Msa0563030:CDS |
| ATTCTGAGGTGAGAAGGAGT+TGG | 0.620014 | 4_1:-63336786 | None:intergenic |
| AAGAAAGTGGATAAATTCTG+AGG | 0.624247 | 4_1:-63336800 | None:intergenic |
| TGGTATCCAAAATAAAAGAA+GGG | 0.625962 | 4_1:+63337675 | Msa0563030:CDS |
| ACCGCTTGTACACGTGATGG+AGG | 0.660525 | 4_1:-63337470 | None:intergenic |
| GTTACCGCTTGTACACGTGA+TGG | 0.662179 | 4_1:-63337473 | None:intergenic |
| TGCATGGATTTATAAGCGTG+CGG | 0.666481 | 4_1:+63337496 | Msa0563030:CDS |
| GCATTGTCTGAAAAGTGTGT+AGG | 0.668698 | 4_1:+63337593 | Msa0563030:CDS |
| AACATTGCTTGGATTCAGAG+AGG | 0.682576 | 4_1:-63338026 | None:intergenic |
| TGGGTGGGGAAATCCAACAT+GGG | 0.705653 | 4_1:+63337865 | Msa0563030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTGAGATAAAGATTTT+CGG | - | chr4_1:63336920-63336939 | None:intergenic | 20.0% |
| !!! | GTAAACAAATTTTCATTTTC+AGG | - | chr4_1:63337803-63337822 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACTTTTAGTAGT+TGG | + | chr4_1:63337813-63337832 | Msa0563030:CDS | 20.0% |
| !!! | CAATGTATGAAACAAATTTT+GGG | + | chr4_1:63337846-63337865 | Msa0563030:CDS | 20.0% |
| !!! | AAGGAATATAATATTTCTGA+TGG | + | chr4_1:63337910-63337929 | Msa0563030:CDS | 20.0% |
| !!! | AAAGTTGAGATAAAGATTTT+CGG | - | chr4_1:63336920-63336939 | None:intergenic | 20.0% |
| !!! | GTAAACAAATTTTCATTTTC+AGG | - | chr4_1:63337803-63337822 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACTTTTAGTAGT+TGG | + | chr4_1:63337813-63337832 | Msa0563030:CDS | 20.0% |
| !!! | CAATGTATGAAACAAATTTT+GGG | + | chr4_1:63337846-63337865 | Msa0563030:CDS | 20.0% |
| !!! | AAGGAATATAATATTTCTGA+TGG | + | chr4_1:63337910-63337929 | Msa0563030:CDS | 20.0% |
| ! | ATGTTATCAATGAAAGAAAG+TGG | - | chr4_1:63336816-63336835 | None:intergenic | 25.0% |
| ! | GGATTGTAAAAGAAAATTAC+TGG | - | chr4_1:63336858-63336877 | None:intergenic | 25.0% |
| !! | TTTCTTTTACAATCCAAATG+AGG | + | chr4_1:63336863-63336882 | Msa0563030:CDS | 25.0% |
| !! | TTCTTTTACAATCCAAATGA+GGG | + | chr4_1:63336864-63336883 | Msa0563030:CDS | 25.0% |
| !!! | GTAGTGATATTTTGGAATTT+CGG | - | chr4_1:63336896-63336915 | None:intergenic | 25.0% |
| ! | ATCATTCATGAAGTTGAAAA+TGG | - | chr4_1:63337222-63337241 | None:intergenic | 25.0% |
| !! | TTTTCAACTTCATGAATGAT+TGG | + | chr4_1:63337222-63337241 | Msa0563030:CDS | 25.0% |
| !!! | TTGTAATTTTTGGTTGATGA+TGG | - | chr4_1:63337249-63337268 | None:intergenic | 25.0% |
| !! | CTTCTTCTTCTTGTAATTTT+TGG | - | chr4_1:63337259-63337278 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAGAAGATAAA+GGG | + | chr4_1:63337270-63337289 | Msa0563030:CDS | 25.0% |
| ! | AAAATAGTTAAATCCCTTTG+TGG | - | chr4_1:63337344-63337363 | None:intergenic | 25.0% |
| ! | GTTAACAAGAAAAAACAATG+TGG | + | chr4_1:63337376-63337395 | Msa0563030:CDS | 25.0% |
| ! | TTGGTATCCAAAATAAAAGA+AGG | + | chr4_1:63337674-63337693 | Msa0563030:CDS | 25.0% |
| ! | TGGTATCCAAAATAAAAGAA+GGG | + | chr4_1:63337675-63337694 | Msa0563030:CDS | 25.0% |
| !!! | AAATTTTCATTTTCAGGATG+AGG | - | chr4_1:63337797-63337816 | None:intergenic | 25.0% |
| !! | CCAAAATTTGTTTCATACAT+TGG | - | chr4_1:63337848-63337867 | None:intergenic | 25.0% |
| !! | CCAATGTATGAAACAAATTT+TGG | + | chr4_1:63337845-63337864 | Msa0563030:CDS | 25.0% |
| ! | ATGTTATCAATGAAAGAAAG+TGG | - | chr4_1:63336816-63336835 | None:intergenic | 25.0% |
| ! | GGATTGTAAAAGAAAATTAC+TGG | - | chr4_1:63336858-63336877 | None:intergenic | 25.0% |
| !! | TTTCTTTTACAATCCAAATG+AGG | + | chr4_1:63336863-63336882 | Msa0563030:CDS | 25.0% |
| !! | TTCTTTTACAATCCAAATGA+GGG | + | chr4_1:63336864-63336883 | Msa0563030:CDS | 25.0% |
| !!! | GTAGTGATATTTTGGAATTT+CGG | - | chr4_1:63336896-63336915 | None:intergenic | 25.0% |
| ! | ATCATTCATGAAGTTGAAAA+TGG | - | chr4_1:63337222-63337241 | None:intergenic | 25.0% |
| !! | TTTTCAACTTCATGAATGAT+TGG | + | chr4_1:63337222-63337241 | Msa0563030:CDS | 25.0% |
| !!! | TTGTAATTTTTGGTTGATGA+TGG | - | chr4_1:63337249-63337268 | None:intergenic | 25.0% |
| !! | CTTCTTCTTCTTGTAATTTT+TGG | - | chr4_1:63337259-63337278 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAGAAGATAAA+GGG | + | chr4_1:63337270-63337289 | Msa0563030:CDS | 25.0% |
| ! | AAAATAGTTAAATCCCTTTG+TGG | - | chr4_1:63337344-63337363 | None:intergenic | 25.0% |
| ! | GTTAACAAGAAAAAACAATG+TGG | + | chr4_1:63337376-63337395 | Msa0563030:CDS | 25.0% |
| ! | TTGGTATCCAAAATAAAAGA+AGG | + | chr4_1:63337674-63337693 | Msa0563030:CDS | 25.0% |
| ! | TGGTATCCAAAATAAAAGAA+GGG | + | chr4_1:63337675-63337694 | Msa0563030:CDS | 25.0% |
| !!! | AAATTTTCATTTTCAGGATG+AGG | - | chr4_1:63337797-63337816 | None:intergenic | 25.0% |
| !! | CCAAAATTTGTTTCATACAT+TGG | - | chr4_1:63337848-63337867 | None:intergenic | 25.0% |
| !! | CCAATGTATGAAACAAATTT+TGG | + | chr4_1:63337845-63337864 | Msa0563030:CDS | 25.0% |
| AAGAAAGTGGATAAATTCTG+AGG | - | chr4_1:63336803-63336822 | None:intergenic | 30.0% | |
| ! | TTTTCGGAGTAGTGATATTT+TGG | - | chr4_1:63336904-63336923 | None:intergenic | 30.0% |
| ! | CTTTTAATCTTCCAGCAAAA+GGG | - | chr4_1:63336956-63336975 | None:intergenic | 30.0% |
| ! | TCTTTTAATCTTCCAGCAAA+AGG | - | chr4_1:63336957-63336976 | None:intergenic | 30.0% |
| ACCATTGAATGTAATGATCA+AGG | + | chr4_1:63336984-63337003 | Msa0563030:CDS | 30.0% | |
| ACCTTGATCATTACATTCAA+TGG | - | chr4_1:63336988-63337007 | None:intergenic | 30.0% | |
| ! | GGGTTCAATATTTTATCAGT+GGG | - | chr4_1:63337065-63337084 | None:intergenic | 30.0% |
| ! | AGGGTTCAATATTTTATCAG+TGG | - | chr4_1:63337066-63337085 | None:intergenic | 30.0% |
| !! | CAAATCAACTGTTTTGAATG+TGG | + | chr4_1:63337146-63337165 | Msa0563030:CDS | 30.0% |
| ATTTGCATGAGTCACAAAAT+TGG | + | chr4_1:63337185-63337204 | Msa0563030:CDS | 30.0% | |
| GAAGAAGAAGAAGAAGATAA+AGG | + | chr4_1:63337269-63337288 | Msa0563030:CDS | 30.0% | |
| TTATCCTTTCCTTTACTTGA+TGG | + | chr4_1:63337302-63337321 | Msa0563030:CDS | 30.0% | |
| TTCTTGTTAACACAAGTTCT+GGG | - | chr4_1:63337367-63337386 | None:intergenic | 30.0% | |
| TTTCTTGTTAACACAAGTTC+TGG | - | chr4_1:63337368-63337387 | None:intergenic | 30.0% | |
| AAAACAATGTGGTGTGTAAA+AGG | + | chr4_1:63337387-63337406 | Msa0563030:CDS | 30.0% | |
| !! | AGACAACCCTTCTTTTATTT+TGG | - | chr4_1:63337684-63337703 | None:intergenic | 30.0% |
| !! | TTACTTTTAGTAGTTGGTGT+AGG | + | chr4_1:63337819-63337838 | Msa0563030:CDS | 30.0% |
| ! | TGTATGAAACAAATTTTGGG+TGG | + | chr4_1:63337849-63337868 | Msa0563030:CDS | 30.0% |
| !! | GTATGAAACAAATTTTGGGT+GGG | + | chr4_1:63337850-63337869 | Msa0563030:CDS | 30.0% |
| !! | TATGAAACAAATTTTGGGTG+GGG | + | chr4_1:63337851-63337870 | Msa0563030:CDS | 30.0% |
| AAGAAAGTGGATAAATTCTG+AGG | - | chr4_1:63336803-63336822 | None:intergenic | 30.0% | |
| ! | TTTTCGGAGTAGTGATATTT+TGG | - | chr4_1:63336904-63336923 | None:intergenic | 30.0% |
| ! | CTTTTAATCTTCCAGCAAAA+GGG | - | chr4_1:63336956-63336975 | None:intergenic | 30.0% |
| ! | TCTTTTAATCTTCCAGCAAA+AGG | - | chr4_1:63336957-63336976 | None:intergenic | 30.0% |
| ACCATTGAATGTAATGATCA+AGG | + | chr4_1:63336984-63337003 | Msa0563030:CDS | 30.0% | |
| ACCTTGATCATTACATTCAA+TGG | - | chr4_1:63336988-63337007 | None:intergenic | 30.0% | |
| ! | GGGTTCAATATTTTATCAGT+GGG | - | chr4_1:63337065-63337084 | None:intergenic | 30.0% |
| ! | AGGGTTCAATATTTTATCAG+TGG | - | chr4_1:63337066-63337085 | None:intergenic | 30.0% |
| !! | CAAATCAACTGTTTTGAATG+TGG | + | chr4_1:63337146-63337165 | Msa0563030:CDS | 30.0% |
| ATTTGCATGAGTCACAAAAT+TGG | + | chr4_1:63337185-63337204 | Msa0563030:CDS | 30.0% | |
| GAAGAAGAAGAAGAAGATAA+AGG | + | chr4_1:63337269-63337288 | Msa0563030:CDS | 30.0% | |
| TTATCCTTTCCTTTACTTGA+TGG | + | chr4_1:63337302-63337321 | Msa0563030:CDS | 30.0% | |
| TTCTTGTTAACACAAGTTCT+GGG | - | chr4_1:63337367-63337386 | None:intergenic | 30.0% | |
| TTTCTTGTTAACACAAGTTC+TGG | - | chr4_1:63337368-63337387 | None:intergenic | 30.0% | |
| AAAACAATGTGGTGTGTAAA+AGG | + | chr4_1:63337387-63337406 | Msa0563030:CDS | 30.0% | |
| !! | AGACAACCCTTCTTTTATTT+TGG | - | chr4_1:63337684-63337703 | None:intergenic | 30.0% |
| !! | TTACTTTTAGTAGTTGGTGT+AGG | + | chr4_1:63337819-63337838 | Msa0563030:CDS | 30.0% |
| ! | TGTATGAAACAAATTTTGGG+TGG | + | chr4_1:63337849-63337868 | Msa0563030:CDS | 30.0% |
| !! | GTATGAAACAAATTTTGGGT+GGG | + | chr4_1:63337850-63337869 | Msa0563030:CDS | 30.0% |
| !! | TATGAAACAAATTTTGGGTG+GGG | + | chr4_1:63337851-63337870 | Msa0563030:CDS | 30.0% |
| !! | AGTTGGTGAAGATGGTTTAA+TGG | - | chr4_1:63336772-63336791 | None:intergenic | 35.0% |
| ! | TCTAAATACTACCCTTTTGC+TGG | + | chr4_1:63336942-63336961 | Msa0563030:CDS | 35.0% |
| !!! | TGATCAAGGTGTGTCATTTT+TGG | + | chr4_1:63336998-63337017 | Msa0563030:CDS | 35.0% |
| !! | ATCAACTGTTTTGAATGTGG+AGG | + | chr4_1:63337149-63337168 | Msa0563030:CDS | 35.0% |
| TTAAGGGACTTGATCATTGA+GGG | - | chr4_1:63337425-63337444 | None:intergenic | 35.0% | |
| AGTGTGTAGGAAACATTGTT+TGG | + | chr4_1:63337606-63337625 | Msa0563030:CDS | 35.0% | |
| !! | CATTGTTTGGTTCTCATCTA+TGG | + | chr4_1:63337619-63337638 | Msa0563030:CDS | 35.0% |
| ATCTATGGTTGCAGATAAGA+AGG | + | chr4_1:63337634-63337653 | Msa0563030:CDS | 35.0% | |
| GGAAATGGAATTACATGAGT+TGG | + | chr4_1:63337655-63337674 | Msa0563030:CDS | 35.0% | |
| ! | TTTCTGATGGATACAAGAGA+TGG | + | chr4_1:63337923-63337942 | Msa0563030:CDS | 35.0% |
| GATTGAAGCTATTGTGAACA+TGG | + | chr4_1:63337952-63337971 | Msa0563030:CDS | 35.0% | |
| !! | AGTTGGTGAAGATGGTTTAA+TGG | - | chr4_1:63336772-63336791 | None:intergenic | 35.0% |
| ! | TCTAAATACTACCCTTTTGC+TGG | + | chr4_1:63336942-63336961 | Msa0563030:CDS | 35.0% |
| !!! | TGATCAAGGTGTGTCATTTT+TGG | + | chr4_1:63336998-63337017 | Msa0563030:CDS | 35.0% |
| !! | ATCAACTGTTTTGAATGTGG+AGG | + | chr4_1:63337149-63337168 | Msa0563030:CDS | 35.0% |
| TTAAGGGACTTGATCATTGA+GGG | - | chr4_1:63337425-63337444 | None:intergenic | 35.0% | |
| AGTGTGTAGGAAACATTGTT+TGG | + | chr4_1:63337606-63337625 | Msa0563030:CDS | 35.0% | |
| !! | CATTGTTTGGTTCTCATCTA+TGG | + | chr4_1:63337619-63337638 | Msa0563030:CDS | 35.0% |
| ATCTATGGTTGCAGATAAGA+AGG | + | chr4_1:63337634-63337653 | Msa0563030:CDS | 35.0% | |
| GGAAATGGAATTACATGAGT+TGG | + | chr4_1:63337655-63337674 | Msa0563030:CDS | 35.0% | |
| ! | TTTCTGATGGATACAAGAGA+TGG | + | chr4_1:63337923-63337942 | Msa0563030:CDS | 35.0% |
| GATTGAAGCTATTGTGAACA+TGG | + | chr4_1:63337952-63337971 | Msa0563030:CDS | 35.0% | |
| !! | GGATAAATTCTGAGGTGAGA+AGG | - | chr4_1:63336795-63336814 | None:intergenic | 40.0% |
| TCTTTCCATTGCAATTCGTC+GGG | - | chr4_1:63337095-63337114 | None:intergenic | 40.0% | |
| GTCTTTCCATTGCAATTCGT+CGG | - | chr4_1:63337096-63337115 | None:intergenic | 40.0% | |
| CGAATTGCAATGGAAAGACA+TGG | + | chr4_1:63337097-63337116 | Msa0563030:CDS | 40.0% | |
| TGCAATGGAAAGACATGGAT+TGG | + | chr4_1:63337102-63337121 | Msa0563030:CDS | 40.0% | |
| !! | CTGTTTTGAATGTGGAGGAA+TGG | + | chr4_1:63337154-63337173 | Msa0563030:CDS | 40.0% |
| TCCTTTCCTTTACTTGATGG+AGG | + | chr4_1:63337305-63337324 | Msa0563030:CDS | 40.0% | |
| TCCTCCATCAAGTAAAGGAA+AGG | - | chr4_1:63337309-63337328 | None:intergenic | 40.0% | |
| TTTACTTGATGGAGGAGCTT+CGG | + | chr4_1:63337313-63337332 | Msa0563030:CDS | 40.0% | |
| ! | AGCTTCGGTTTTTCCACAAA+GGG | + | chr4_1:63337328-63337347 | Msa0563030:CDS | 40.0% |
| CTTAAGGGACTTGATCATTG+AGG | - | chr4_1:63337426-63337445 | None:intergenic | 40.0% | |
| CTCAATGATCAAGTCCCTTA+AGG | + | chr4_1:63337424-63337443 | Msa0563030:CDS | 40.0% | |
| AGAAGTTGCCATTGCCTTAA+GGG | - | chr4_1:63337441-63337460 | None:intergenic | 40.0% | |
| TAGAAGTTGCCATTGCCTTA+AGG | - | chr4_1:63337442-63337461 | None:intergenic | 40.0% | |
| TGCATGGATTTATAAGCGTG+CGG | + | chr4_1:63337496-63337515 | Msa0563030:CDS | 40.0% | |
| TAAGCGTGCGGTTTCATTAA+TGG | + | chr4_1:63337508-63337527 | Msa0563030:CDS | 40.0% | |
| AAGCGTGCGGTTTCATTAAT+GGG | + | chr4_1:63337509-63337528 | Msa0563030:CDS | 40.0% | |
| ! | ACACACTTTTCAGACAATGC+AGG | - | chr4_1:63337593-63337612 | None:intergenic | 40.0% |
| ! | GCATTGTCTGAAAAGTGTGT+AGG | + | chr4_1:63337593-63337612 | Msa0563030:CDS | 40.0% |
| GGTTGCAGATAAGAAGGAAA+TGG | + | chr4_1:63337640-63337659 | Msa0563030:CDS | 40.0% | |
| AAAGAAGGGTTGTCTCAGTT+TGG | + | chr4_1:63337689-63337708 | Msa0563030:CDS | 40.0% | |
| !! | TCAGTTTGGTGGCTTTATTC+CGG | + | chr4_1:63337703-63337722 | Msa0563030:CDS | 40.0% |
| !! | GGCTTTATTCCGGAAACATT+TGG | + | chr4_1:63337713-63337732 | Msa0563030:CDS | 40.0% |
| TCTTTCGCTCCAAATGTTTC+CGG | - | chr4_1:63337725-63337744 | None:intergenic | 40.0% | |
| ! | AACATTTGGAGCGAAAGAGA+AGG | + | chr4_1:63337727-63337746 | Msa0563030:CDS | 40.0% |
| CCTTGAAGAACAACCAAATG+TGG | - | chr4_1:63337894-63337913 | None:intergenic | 40.0% | |
| CCACATTTGGTTGTTCTTCA+AGG | + | chr4_1:63337891-63337910 | Msa0563030:CDS | 40.0% | |
| ATGGATACAAGAGATGGAGA+AGG | + | chr4_1:63337929-63337948 | Msa0563030:CDS | 40.0% | |
| TGGATACAAGAGATGGAGAA+GGG | + | chr4_1:63337930-63337949 | Msa0563030:CDS | 40.0% | |
| AACATTGCTTGGATTCAGAG+AGG | - | chr4_1:63338029-63338048 | None:intergenic | 40.0% | |
| TCTCTGAATCCAAGCAATGT+TGG | + | chr4_1:63338028-63338047 | Msa0563030:CDS | 40.0% | |
| !! | GGATAAATTCTGAGGTGAGA+AGG | - | chr4_1:63336795-63336814 | None:intergenic | 40.0% |
| TCTTTCCATTGCAATTCGTC+GGG | - | chr4_1:63337095-63337114 | None:intergenic | 40.0% | |
| GTCTTTCCATTGCAATTCGT+CGG | - | chr4_1:63337096-63337115 | None:intergenic | 40.0% | |
| CGAATTGCAATGGAAAGACA+TGG | + | chr4_1:63337097-63337116 | Msa0563030:CDS | 40.0% | |
| TGCAATGGAAAGACATGGAT+TGG | + | chr4_1:63337102-63337121 | Msa0563030:CDS | 40.0% | |
| !! | CTGTTTTGAATGTGGAGGAA+TGG | + | chr4_1:63337154-63337173 | Msa0563030:CDS | 40.0% |
| TCCTTTCCTTTACTTGATGG+AGG | + | chr4_1:63337305-63337324 | Msa0563030:CDS | 40.0% | |
| TCCTCCATCAAGTAAAGGAA+AGG | - | chr4_1:63337309-63337328 | None:intergenic | 40.0% | |
| TTTACTTGATGGAGGAGCTT+CGG | + | chr4_1:63337313-63337332 | Msa0563030:CDS | 40.0% | |
| ! | AGCTTCGGTTTTTCCACAAA+GGG | + | chr4_1:63337328-63337347 | Msa0563030:CDS | 40.0% |
| CTTAAGGGACTTGATCATTG+AGG | - | chr4_1:63337426-63337445 | None:intergenic | 40.0% | |
| CTCAATGATCAAGTCCCTTA+AGG | + | chr4_1:63337424-63337443 | Msa0563030:CDS | 40.0% | |
| AGAAGTTGCCATTGCCTTAA+GGG | - | chr4_1:63337441-63337460 | None:intergenic | 40.0% | |
| TAGAAGTTGCCATTGCCTTA+AGG | - | chr4_1:63337442-63337461 | None:intergenic | 40.0% | |
| TGCATGGATTTATAAGCGTG+CGG | + | chr4_1:63337496-63337515 | Msa0563030:CDS | 40.0% | |
| TAAGCGTGCGGTTTCATTAA+TGG | + | chr4_1:63337508-63337527 | Msa0563030:CDS | 40.0% | |
| AAGCGTGCGGTTTCATTAAT+GGG | + | chr4_1:63337509-63337528 | Msa0563030:CDS | 40.0% | |
| ! | ACACACTTTTCAGACAATGC+AGG | - | chr4_1:63337593-63337612 | None:intergenic | 40.0% |
| ! | GCATTGTCTGAAAAGTGTGT+AGG | + | chr4_1:63337593-63337612 | Msa0563030:CDS | 40.0% |
| GGTTGCAGATAAGAAGGAAA+TGG | + | chr4_1:63337640-63337659 | Msa0563030:CDS | 40.0% | |
| AAAGAAGGGTTGTCTCAGTT+TGG | + | chr4_1:63337689-63337708 | Msa0563030:CDS | 40.0% | |
| !! | TCAGTTTGGTGGCTTTATTC+CGG | + | chr4_1:63337703-63337722 | Msa0563030:CDS | 40.0% |
| !! | GGCTTTATTCCGGAAACATT+TGG | + | chr4_1:63337713-63337732 | Msa0563030:CDS | 40.0% |
| TCTTTCGCTCCAAATGTTTC+CGG | - | chr4_1:63337725-63337744 | None:intergenic | 40.0% | |
| ! | AACATTTGGAGCGAAAGAGA+AGG | + | chr4_1:63337727-63337746 | Msa0563030:CDS | 40.0% |
| CCTTGAAGAACAACCAAATG+TGG | - | chr4_1:63337894-63337913 | None:intergenic | 40.0% | |
| CCACATTTGGTTGTTCTTCA+AGG | + | chr4_1:63337891-63337910 | Msa0563030:CDS | 40.0% | |
| ATGGATACAAGAGATGGAGA+AGG | + | chr4_1:63337929-63337948 | Msa0563030:CDS | 40.0% | |
| TGGATACAAGAGATGGAGAA+GGG | + | chr4_1:63337930-63337949 | Msa0563030:CDS | 40.0% | |
| AACATTGCTTGGATTCAGAG+AGG | - | chr4_1:63338029-63338048 | None:intergenic | 40.0% | |
| TCTCTGAATCCAAGCAATGT+TGG | + | chr4_1:63338028-63338047 | Msa0563030:CDS | 40.0% | |
| !! | TGAGAAGGAGTTGGTGAAGA+TGG | - | chr4_1:63336780-63336799 | None:intergenic | 45.0% |
| !! | ATTCTGAGGTGAGAAGGAGT+TGG | - | chr4_1:63336789-63336808 | None:intergenic | 45.0% |
| TTTCGGTGACTACCCTCATT+TGG | - | chr4_1:63336879-63336898 | None:intergenic | 45.0% | |
| GCAATTCGTCGGGAAACAAA+GGG | - | chr4_1:63337085-63337104 | None:intergenic | 45.0% | |
| TGCAATTCGTCGGGAAACAA+AGG | - | chr4_1:63337086-63337105 | None:intergenic | 45.0% | |
| TGTTTCCCGACGAATTGCAA+TGG | + | chr4_1:63337087-63337106 | Msa0563030:CDS | 45.0% | |
| GAAGCTCCTCCATCAAGTAA+AGG | - | chr4_1:63337314-63337333 | None:intergenic | 45.0% | |
| ! | GAGCTTCGGTTTTTCCACAA+AGG | + | chr4_1:63337327-63337346 | Msa0563030:CDS | 45.0% |
| GATCAAGTCCCTTAAGGCAA+TGG | + | chr4_1:63337430-63337449 | Msa0563030:CDS | 45.0% | |
| CAGACGACAACGTTTAGCAT+GGG | + | chr4_1:63337542-63337561 | Msa0563030:CDS | 45.0% | |
| TCATCGTGTCCAACATTGCT+TGG | - | chr4_1:63338040-63338059 | None:intergenic | 45.0% | |
| !! | TGAGAAGGAGTTGGTGAAGA+TGG | - | chr4_1:63336780-63336799 | None:intergenic | 45.0% |
| !! | ATTCTGAGGTGAGAAGGAGT+TGG | - | chr4_1:63336789-63336808 | None:intergenic | 45.0% |
| TTTCGGTGACTACCCTCATT+TGG | - | chr4_1:63336879-63336898 | None:intergenic | 45.0% | |
| GCAATTCGTCGGGAAACAAA+GGG | - | chr4_1:63337085-63337104 | None:intergenic | 45.0% | |
| TGCAATTCGTCGGGAAACAA+AGG | - | chr4_1:63337086-63337105 | None:intergenic | 45.0% | |
| TGTTTCCCGACGAATTGCAA+TGG | + | chr4_1:63337087-63337106 | Msa0563030:CDS | 45.0% | |
| GAAGCTCCTCCATCAAGTAA+AGG | - | chr4_1:63337314-63337333 | None:intergenic | 45.0% | |
| ! | GAGCTTCGGTTTTTCCACAA+AGG | + | chr4_1:63337327-63337346 | Msa0563030:CDS | 45.0% |
| GATCAAGTCCCTTAAGGCAA+TGG | + | chr4_1:63337430-63337449 | Msa0563030:CDS | 45.0% | |
| CAGACGACAACGTTTAGCAT+GGG | + | chr4_1:63337542-63337561 | Msa0563030:CDS | 45.0% | |
| TCATCGTGTCCAACATTGCT+TGG | - | chr4_1:63338040-63338059 | None:intergenic | 45.0% | |
| ACCTCCATCACGTGTACAAG+CGG | + | chr4_1:63337469-63337488 | Msa0563030:CDS | 50.0% | |
| GTTACCGCTTGTACACGTGA+TGG | - | chr4_1:63337476-63337495 | None:intergenic | 50.0% | |
| GTGTACAAGCGGTAACTGCA+TGG | + | chr4_1:63337480-63337499 | Msa0563030:CDS | 50.0% | |
| CCATGCTAAACGTTGTCGTC+TGG | - | chr4_1:63337544-63337563 | None:intergenic | 50.0% | |
| CCAGACGACAACGTTTAGCA+TGG | + | chr4_1:63337541-63337560 | Msa0563030:CDS | 50.0% | |
| GACAACGTTTAGCATGGGTG+TGG | + | chr4_1:63337547-63337566 | Msa0563030:CDS | 50.0% | |
| GAAGGGTTGTCTCAGTTTGG+TGG | + | chr4_1:63337692-63337711 | Msa0563030:CDS | 50.0% | |
| TTGGGTGGGGAAATCCAACA+TGG | + | chr4_1:63337864-63337883 | Msa0563030:CDS | 50.0% | |
| TGGGTGGGGAAATCCAACAT+GGG | + | chr4_1:63337865-63337884 | Msa0563030:CDS | 50.0% | |
| CCAAATGTGGTGACCCATGT+TGG | - | chr4_1:63337881-63337900 | None:intergenic | 50.0% | |
| CCAACATGGGTCACCACATT+TGG | + | chr4_1:63337878-63337897 | Msa0563030:CDS | 50.0% | |
| ACCTCCATCACGTGTACAAG+CGG | + | chr4_1:63337469-63337488 | Msa0563030:CDS | 50.0% | |
| GTTACCGCTTGTACACGTGA+TGG | - | chr4_1:63337476-63337495 | None:intergenic | 50.0% | |
| GTGTACAAGCGGTAACTGCA+TGG | + | chr4_1:63337480-63337499 | Msa0563030:CDS | 50.0% | |
| CCATGCTAAACGTTGTCGTC+TGG | - | chr4_1:63337544-63337563 | None:intergenic | 50.0% | |
| CCAGACGACAACGTTTAGCA+TGG | + | chr4_1:63337541-63337560 | Msa0563030:CDS | 50.0% | |
| GACAACGTTTAGCATGGGTG+TGG | + | chr4_1:63337547-63337566 | Msa0563030:CDS | 50.0% | |
| GAAGGGTTGTCTCAGTTTGG+TGG | + | chr4_1:63337692-63337711 | Msa0563030:CDS | 50.0% | |
| TTGGGTGGGGAAATCCAACA+TGG | + | chr4_1:63337864-63337883 | Msa0563030:CDS | 50.0% | |
| TGGGTGGGGAAATCCAACAT+GGG | + | chr4_1:63337865-63337884 | Msa0563030:CDS | 50.0% | |
| CCAAATGTGGTGACCCATGT+TGG | - | chr4_1:63337881-63337900 | None:intergenic | 50.0% | |
| CCAACATGGGTCACCACATT+TGG | + | chr4_1:63337878-63337897 | Msa0563030:CDS | 50.0% | |
| ACCGCTTGTACACGTGATGG+AGG | - | chr4_1:63337473-63337492 | None:intergenic | 55.0% | |
| ACCGCTTGTACACGTGATGG+AGG | - | chr4_1:63337473-63337492 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63336741 | 63338099 | 63336741 | ID=Msa0563030;Name=Msa0563030 |
| chr4_1 | mRNA | 63336741 | 63338099 | 63336741 | ID=Msa0563030-mRNA-1;Parent=Msa0563030;Name=Msa0563030-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|452 |
| chr4_1 | exon | 63336741 | 63338099 | 63336741 | ID=Msa0563030-mRNA-1:exon:20088;Parent=Msa0563030-mRNA-1 |
| chr4_1 | CDS | 63336741 | 63338099 | 63336741 | ID=Msa0563030-mRNA-1:cds;Parent=Msa0563030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
