Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995440 | RHN51205.1 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 1.55e-158 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995440 | sp|Q6Q3H3|TPSGD_VITVI | 52.288 | 306 | 120 | 4 | 17 | 301 | 22 | 322 | 7.38e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995440 | A0A396HD15 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 7.41e-159 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739070 | Msa0995440 | 0.817828 | 2.692517e-52 | -8.615850e-47 |
| Msa0995410 | Msa0995440 | 0.824103 | 9.676137e-54 | -8.615850e-47 |
| Msa0995420 | Msa0995440 | 0.851800 | 7.009002e-61 | -8.615850e-47 |
| Msa0995430 | Msa0995440 | 0.840213 | 9.957356e-58 | -8.615850e-47 |
| Msa0995440 | Msa0995460 | 0.835814 | 1.347804e-56 | -8.615850e-47 |
| Msa0995440 | Msa0995470 | 0.830423 | 2.962381e-55 | -8.615850e-47 |
| Msa0995440 | Msa0995480 | 0.816028 | 6.830814e-52 | -8.615850e-47 |
| Msa0995440 | Msa0995490 | 0.842934 | 1.908958e-58 | -8.615850e-47 |
| Msa0995440 | Msa0995500 | 0.833043 | 6.688583e-56 | -8.615850e-47 |
| Msa0995440 | Msa0995600 | 0.814048 | 1.878210e-51 | -8.615850e-47 |
| Msa0995440 | Msa0995610 | 0.830780 | 2.422377e-55 | -8.615850e-47 |
| Msa0995440 | Msa0995620 | 0.824165 | 9.355039e-54 | -8.615850e-47 |
| Msa0995440 | Msa0995630 | 0.854843 | 9.393852e-62 | -8.615850e-47 |
| Msa0563030 | Msa0995440 | 0.802505 | 5.434842e-49 | -8.615850e-47 |
| Msa0894010 | Msa0995440 | 0.842515 | 2.466344e-58 | -8.615850e-47 |
| Msa0894040 | Msa0995440 | 0.813733 | 2.203725e-51 | -8.615850e-47 |
| Msa0894070 | Msa0995440 | 0.806335 | 8.648200e-50 | -8.615850e-47 |
| Msa0894080 | Msa0995440 | 0.863983 | 1.685379e-64 | -8.615850e-47 |
| Msa0894100 | Msa0995440 | 0.831619 | 1.506742e-55 | -8.615850e-47 |
| Msa0916290 | Msa0995440 | 0.824969 | 6.049476e-54 | -8.615850e-47 |
| Msa0920680 | Msa0995440 | 0.823413 | 1.404146e-53 | -8.615850e-47 |
| Msa0920710 | Msa0995440 | 0.827574 | 1.451430e-54 | -8.615850e-47 |
| Msa0920720 | Msa0995440 | 0.881935 | 1.586159e-70 | -8.615850e-47 |
| Msa0920760 | Msa0995440 | 0.836620 | 8.409387e-57 | -8.615850e-47 |
| Msa0920770 | Msa0995440 | 0.870478 | 1.416089e-66 | -8.615850e-47 |
| Msa0920810 | Msa0995440 | 0.843344 | 1.484166e-58 | -8.615850e-47 |
| Msa0920820 | Msa0995440 | 0.824287 | 8.757426e-54 | -8.615850e-47 |
| Msa0920830 | Msa0995440 | 0.830944 | 2.207300e-55 | -8.615850e-47 |
| Msa0959170 | Msa0995440 | 0.853833 | 1.839475e-61 | -8.615850e-47 |
| Msa0959180 | Msa0995440 | 0.831020 | 2.114706e-55 | -8.615850e-47 |
| Msa0959190 | Msa0995440 | 0.844869 | 5.787714e-59 | -8.615850e-47 |
| Msa0959210 | Msa0995440 | 0.856260 | 3.627480e-62 | -8.615850e-47 |
| Msa0959250 | Msa0995440 | 0.861087 | 1.312677e-63 | -8.615850e-47 |
| Msa0959280 | Msa0995440 | 0.800248 | 1.575504e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995440 | MtrunA17_Chr6g0465981 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 1.43e-162 | 457 |
| Msa0995440 | MtrunA17_Chr6g0465871 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 1.43e-162 | 457 |
| Msa0995440 | MtrunA17_Chr6g0466081 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 1.43e-162 | 457 |
| Msa0995440 | MtrunA17_Chr6g0466051 | 69.470 | 321 | 75 | 3 | 1 | 301 | 1 | 318 | 2.18e-160 | 458 |
| Msa0995440 | MtrunA17_Chr6g0465911 | 69.159 | 321 | 76 | 3 | 1 | 301 | 1 | 318 | 1.47e-159 | 456 |
| Msa0995440 | MtrunA17_Chr5g0425371 | 67.601 | 321 | 81 | 3 | 1 | 301 | 1 | 318 | 1.04e-156 | 449 |
| Msa0995440 | MtrunA17_Chr7g0236991 | 66.978 | 321 | 83 | 3 | 1 | 301 | 1 | 318 | 7.93e-154 | 441 |
| Msa0995440 | MtrunA17_Chr7g0237001 | 66.667 | 321 | 84 | 3 | 1 | 301 | 1 | 318 | 5.57e-153 | 439 |
| Msa0995440 | MtrunA17_Chr7g0237041 | 66.667 | 321 | 84 | 3 | 1 | 301 | 1 | 318 | 5.57e-153 | 439 |
| Msa0995440 | MtrunA17_Chr7g0237081 | 66.667 | 321 | 84 | 3 | 1 | 301 | 1 | 318 | 5.57e-153 | 439 |
| Msa0995440 | MtrunA17_Chr7g0237051 | 66.667 | 321 | 84 | 3 | 1 | 301 | 1 | 318 | 5.57e-153 | 439 |
| Msa0995440 | MtrunA17_Chr6g0451711 | 66.149 | 322 | 88 | 3 | 1 | 301 | 1 | 322 | 1.01e-151 | 436 |
| Msa0995440 | MtrunA17_Chr6g0466111 | 74.721 | 269 | 64 | 1 | 37 | 301 | 15 | 283 | 3.27e-149 | 422 |
| Msa0995440 | MtrunA17_Chr6g0465441 | 65.109 | 321 | 89 | 3 | 1 | 301 | 1 | 318 | 5.30e-149 | 429 |
| Msa0995440 | MtrunA17_Chr6g0465931 | 74.349 | 269 | 65 | 1 | 37 | 301 | 15 | 283 | 7.08e-148 | 418 |
| Msa0995440 | MtrunA17_Chr3g0105071 | 65.528 | 322 | 90 | 3 | 1 | 301 | 1 | 322 | 1.52e-147 | 426 |
| Msa0995440 | MtrunA17_Chr6g0465851 | 74.721 | 269 | 64 | 1 | 37 | 301 | 15 | 283 | 2.64e-146 | 421 |
| Msa0995440 | MtrunA17_Chr4g0024691 | 61.783 | 314 | 100 | 2 | 8 | 301 | 13 | 326 | 2.97e-143 | 415 |
| Msa0995440 | MtrunA17_Chr7g0236951 | 72.243 | 263 | 69 | 1 | 43 | 301 | 1 | 263 | 8.92e-142 | 402 |
| Msa0995440 | MtrunA17_Chr7g0237031 | 72.243 | 263 | 69 | 1 | 43 | 301 | 1 | 263 | 2.94e-141 | 400 |
| Msa0995440 | MtrunA17_Chr3g0082691 | 65.595 | 311 | 86 | 3 | 12 | 301 | 8 | 318 | 5.89e-140 | 406 |
| Msa0995440 | MtrunA17_Chr7g0236961 | 72.243 | 263 | 69 | 1 | 43 | 301 | 1 | 263 | 3.27e-139 | 402 |
| Msa0995440 | MtrunA17_Chr7g0237011 | 72.243 | 263 | 69 | 1 | 43 | 301 | 1 | 263 | 1.29e-138 | 400 |
| Msa0995440 | MtrunA17_Chr5g0431571 | 66.881 | 311 | 82 | 3 | 12 | 301 | 4 | 314 | 1.47e-138 | 402 |
| Msa0995440 | MtrunA17_Chr5g0431651 | 64.309 | 311 | 89 | 4 | 13 | 301 | 7 | 317 | 4.12e-136 | 396 |
| Msa0995440 | MtrunA17_Chr4g0042111 | 57.006 | 314 | 114 | 3 | 9 | 301 | 14 | 327 | 2.52e-125 | 369 |
| Msa0995440 | MtrunA17_Chr7g0237071 | 69.307 | 202 | 58 | 1 | 43 | 240 | 1 | 202 | 2.75e-97 | 286 |
| Msa0995440 | MtrunA17_Chr8g0336181 | 47.436 | 312 | 141 | 3 | 13 | 301 | 9 | 320 | 6.46e-97 | 296 |
| Msa0995440 | MtrunA17_Chr2g0319041 | 46.129 | 310 | 144 | 4 | 15 | 301 | 12 | 321 | 1.13e-95 | 293 |
| Msa0995440 | MtrunA17_Chr4g0008621 | 44.839 | 310 | 148 | 3 | 15 | 301 | 19 | 328 | 1.94e-92 | 281 |
| Msa0995440 | MtrunA17_Chr2g0319051 | 49.254 | 268 | 130 | 2 | 40 | 301 | 12 | 279 | 7.88e-91 | 279 |
| Msa0995440 | MtrunA17_Chr6g0466021 | 64.706 | 204 | 49 | 3 | 1 | 184 | 1 | 201 | 2.85e-88 | 262 |
| Msa0995440 | MtrunA17_Chr5g0445511 | 69.412 | 170 | 48 | 1 | 136 | 301 | 2 | 171 | 1.21e-82 | 249 |
| Msa0995440 | MtrunA17_Chr7g0236971 | 69.880 | 166 | 46 | 1 | 140 | 301 | 1 | 166 | 4.43e-80 | 248 |
| Msa0995440 | MtrunA17_Chr4g0023911 | 40.391 | 307 | 164 | 5 | 13 | 301 | 41 | 346 | 2.95e-69 | 225 |
| Msa0995440 | MtrunA17_Chr2g0310331 | 40.789 | 304 | 157 | 4 | 17 | 301 | 53 | 352 | 2.03e-65 | 215 |
| Msa0995440 | MtrunA17_Chr2g0323131 | 41.481 | 270 | 136 | 5 | 41 | 301 | 75 | 331 | 6.16e-63 | 208 |
| Msa0995440 | MtrunA17_Chr2g0323151 | 41.016 | 256 | 130 | 4 | 55 | 301 | 4 | 247 | 5.35e-59 | 196 |
| Msa0995440 | MtrunA17_Chr8g0357411 | 36.306 | 314 | 177 | 5 | 7 | 301 | 45 | 354 | 1.77e-58 | 197 |
| Msa0995440 | MtrunA17_Chr2g0319071 | 40.562 | 249 | 125 | 5 | 40 | 282 | 31 | 262 | 6.24e-55 | 185 |
| Msa0995440 | MtrunA17_Chr7g0236981 | 59.259 | 135 | 36 | 2 | 1 | 119 | 1 | 132 | 1.77e-49 | 161 |
| Msa0995440 | MtrunA17_Chr7g0233861 | 61.905 | 126 | 39 | 1 | 176 | 301 | 33 | 149 | 7.11e-49 | 160 |
| Msa0995440 | MtrunA17_Chr4g0048921 | 35.714 | 266 | 166 | 3 | 39 | 301 | 71 | 334 | 1.71e-44 | 159 |
| Msa0995440 | MtrunA17_Chr4g0048911 | 32.967 | 273 | 165 | 4 | 40 | 301 | 62 | 327 | 5.57e-44 | 157 |
| Msa0995440 | MtrunA17_Chr2g0280581 | 33.333 | 264 | 170 | 3 | 44 | 301 | 22 | 285 | 8.08e-43 | 154 |
| Msa0995440 | MtrunA17_Chr8g0357221 | 34.818 | 247 | 138 | 5 | 10 | 237 | 48 | 290 | 1.75e-38 | 137 |
| Msa0995440 | MtrunA17_Chr3g0109021 | 30.357 | 280 | 184 | 6 | 32 | 301 | 3 | 281 | 1.00e-34 | 131 |
| Msa0995440 | MtrunA17_Chr3g0109031 | 29.643 | 280 | 186 | 6 | 32 | 301 | 3 | 281 | 3.17e-34 | 130 |
| Msa0995440 | MtrunA17_Chr3g0105691 | 30.000 | 280 | 185 | 5 | 32 | 301 | 36 | 314 | 3.62e-34 | 130 |
| Msa0995440 | MtrunA17_Chr3g0109001 | 31.179 | 263 | 172 | 5 | 47 | 301 | 21 | 282 | 2.10e-33 | 128 |
| Msa0995440 | MtrunA17_Chr5g0445401 | 65.957 | 94 | 26 | 1 | 150 | 237 | 1 | 94 | 2.50e-33 | 117 |
| Msa0995440 | MtrunA17_Chr2g0310401 | 37.113 | 194 | 116 | 2 | 114 | 301 | 5 | 198 | 3.43e-33 | 126 |
| Msa0995440 | MtrunA17_Chr5g0445521 | 59.184 | 98 | 24 | 1 | 1 | 82 | 1 | 98 | 8.80e-33 | 117 |
| Msa0995440 | MtrunA17_Chr3g0108941 | 30.418 | 263 | 174 | 5 | 47 | 301 | 21 | 282 | 4.06e-32 | 124 |
| Msa0995440 | MtrunA17_Chr3g0108981 | 30.350 | 257 | 172 | 3 | 52 | 301 | 1 | 257 | 1.68e-31 | 122 |
| Msa0995440 | MtrunA17_Chr3g0108961 | 30.350 | 257 | 172 | 3 | 52 | 301 | 1 | 257 | 1.68e-31 | 122 |
| Msa0995440 | MtrunA17_Chr6g0477111 | 30.739 | 257 | 170 | 5 | 52 | 301 | 1 | 256 | 1.13e-30 | 120 |
| Msa0995440 | MtrunA17_Chr3g0108991 | 28.571 | 280 | 189 | 6 | 32 | 301 | 3 | 281 | 5.98e-30 | 118 |
| Msa0995440 | MtrunA17_Chr3g0108951 | 28.571 | 280 | 189 | 6 | 32 | 301 | 3 | 281 | 5.98e-30 | 118 |
| Msa0995440 | MtrunA17_Chr3g0099031 | 29.181 | 281 | 175 | 7 | 40 | 301 | 6 | 281 | 5.94e-29 | 115 |
| Msa0995440 | MtrunA17_Chr3g0108971 | 29.961 | 257 | 172 | 5 | 52 | 301 | 1 | 256 | 6.08e-29 | 115 |
| Msa0995440 | MtrunA17_Chr3g0109011 | 28.794 | 257 | 175 | 4 | 52 | 301 | 1 | 256 | 3.13e-28 | 113 |
| Msa0995440 | MtrunA17_Chr2g0310121 | 28.676 | 272 | 167 | 6 | 54 | 300 | 275 | 544 | 1.93e-26 | 109 |
| Msa0995440 | MtrunA17_Chr3g0101681 | 27.941 | 272 | 169 | 5 | 54 | 300 | 276 | 545 | 3.34e-26 | 108 |
| Msa0995440 | MtrunA17_Chr7g0259881 | 26.374 | 273 | 169 | 5 | 52 | 293 | 227 | 498 | 5.68e-25 | 104 |
| Msa0995440 | MtrunA17_Chr7g0218001 | 29.197 | 274 | 158 | 6 | 52 | 290 | 344 | 616 | 7.97e-25 | 104 |
| Msa0995440 | MtrunA17_Chr7g0217351 | 29.897 | 194 | 126 | 3 | 52 | 238 | 83 | 273 | 1.28e-20 | 89.7 |
| Msa0995440 | MtrunA17_Chr6g0477121 | 29.843 | 191 | 127 | 4 | 117 | 301 | 10 | 199 | 1.34e-20 | 91.3 |
| Msa0995440 | MtrunA17_Chr2g0319081 | 46.667 | 90 | 41 | 3 | 213 | 301 | 120 | 203 | 2.47e-19 | 87.8 |
| Msa0995440 | MtrunA17_Chr2g0319081 | 33.333 | 138 | 73 | 3 | 1 | 119 | 3 | 140 | 9.26e-18 | 83.2 |
| Msa0995440 | MtrunA17_Chr7g0218041 | 28.767 | 219 | 124 | 5 | 104 | 291 | 3 | 220 | 3.89e-14 | 72.4 |
| Msa0995440 | MtrunA17_Chr2g0310411 | 30.508 | 118 | 66 | 2 | 10 | 115 | 51 | 164 | 6.02e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995440 | AT5G23960.2 | 37.419 | 310 | 172 | 4 | 13 | 301 | 3 | 311 | 1.04e-71 | 231 |
| Msa0995440 | AT5G23960.1 | 37.419 | 310 | 172 | 4 | 13 | 301 | 3 | 311 | 1.05e-71 | 231 |
| Msa0995440 | AT3G14490.1 | 39.159 | 309 | 162 | 3 | 17 | 301 | 60 | 366 | 8.38e-70 | 227 |
| Msa0995440 | AT3G14540.2 | 40.397 | 302 | 155 | 3 | 22 | 300 | 65 | 364 | 2.12e-68 | 221 |
| Msa0995440 | AT1G70080.1 | 38.438 | 320 | 170 | 7 | 8 | 301 | 57 | 375 | 2.45e-68 | 223 |
| Msa0995440 | AT3G14540.1 | 40.397 | 302 | 155 | 3 | 22 | 300 | 65 | 364 | 1.46e-67 | 221 |
| Msa0995440 | AT1G31950.2 | 37.705 | 305 | 162 | 4 | 22 | 301 | 70 | 371 | 2.05e-65 | 214 |
| Msa0995440 | AT1G31950.1 | 37.829 | 304 | 162 | 4 | 22 | 301 | 70 | 370 | 7.57e-65 | 214 |
| Msa0995440 | AT3G14520.1 | 38.487 | 304 | 160 | 5 | 22 | 301 | 68 | 368 | 7.77e-65 | 214 |
| Msa0995440 | AT1G31950.3 | 37.705 | 305 | 162 | 4 | 22 | 301 | 70 | 371 | 9.22e-65 | 214 |
| Msa0995440 | AT3G29410.1 | 37.785 | 307 | 167 | 4 | 17 | 301 | 64 | 368 | 4.28e-60 | 202 |
| Msa0995440 | AT5G44630.1 | 37.838 | 296 | 164 | 6 | 14 | 301 | 39 | 322 | 2.62e-59 | 199 |
| Msa0995440 | AT4G15870.1 | 39.326 | 267 | 152 | 4 | 43 | 301 | 110 | 374 | 4.12e-59 | 199 |
| Msa0995440 | AT1G33750.1 | 37.124 | 299 | 164 | 4 | 24 | 301 | 73 | 368 | 1.57e-57 | 195 |
| Msa0995440 | AT3G29410.2 | 39.623 | 265 | 152 | 3 | 43 | 301 | 1 | 263 | 3.34e-57 | 192 |
| Msa0995440 | AT4G20200.1 | 39.300 | 257 | 143 | 4 | 53 | 300 | 115 | 367 | 6.66e-56 | 191 |
| Msa0995440 | AT4G16730.1 | 37.410 | 278 | 151 | 5 | 40 | 301 | 31 | 301 | 1.40e-55 | 188 |
| Msa0995440 | AT4G20210.1 | 37.367 | 281 | 160 | 5 | 29 | 300 | 90 | 363 | 1.56e-55 | 189 |
| Msa0995440 | AT2G23230.1 | 36.422 | 313 | 168 | 8 | 16 | 301 | 55 | 363 | 3.30e-55 | 189 |
| Msa0995440 | AT2G23230.2 | 36.422 | 313 | 168 | 8 | 16 | 301 | 55 | 363 | 3.59e-55 | 189 |
| Msa0995440 | AT4G16740.4 | 33.129 | 326 | 183 | 7 | 4 | 301 | 14 | 332 | 3.43e-54 | 181 |
| Msa0995440 | AT4G16740.3 | 33.129 | 326 | 183 | 7 | 4 | 301 | 14 | 332 | 3.43e-54 | 181 |
| Msa0995440 | AT4G13300.1 | 38.971 | 272 | 153 | 5 | 40 | 301 | 50 | 318 | 4.07e-54 | 185 |
| Msa0995440 | AT4G16730.2 | 37.931 | 261 | 140 | 4 | 57 | 301 | 1 | 255 | 7.19e-54 | 183 |
| Msa0995440 | AT4G16740.2 | 33.019 | 318 | 179 | 6 | 12 | 301 | 21 | 332 | 7.23e-54 | 181 |
| Msa0995440 | AT4G20230.1 | 34.983 | 303 | 172 | 6 | 7 | 300 | 81 | 367 | 7.72e-54 | 185 |
| Msa0995440 | AT4G20230.2 | 34.983 | 303 | 172 | 6 | 7 | 300 | 93 | 379 | 9.59e-54 | 185 |
| Msa0995440 | AT3G32030.1 | 33.540 | 322 | 183 | 5 | 2 | 300 | 54 | 367 | 7.34e-53 | 182 |
| Msa0995440 | AT3G29190.1 | 37.255 | 255 | 151 | 3 | 53 | 300 | 112 | 364 | 2.26e-52 | 181 |
| Msa0995440 | AT2G24210.1 | 34.169 | 319 | 177 | 7 | 10 | 301 | 39 | 351 | 4.36e-52 | 180 |
| Msa0995440 | AT4G16740.1 | 33.019 | 318 | 179 | 6 | 12 | 301 | 21 | 332 | 5.92e-52 | 179 |
| Msa0995440 | AT1G66020.2 | 35.125 | 279 | 169 | 4 | 29 | 300 | 88 | 361 | 9.42e-52 | 176 |
| Msa0995440 | AT3G29110.1 | 36.184 | 304 | 169 | 7 | 7 | 301 | 74 | 361 | 3.80e-51 | 177 |
| Msa0995440 | AT3G25820.4 | 32.372 | 312 | 184 | 8 | 15 | 301 | 45 | 354 | 1.61e-50 | 172 |
| Msa0995440 | AT3G25820.3 | 32.372 | 312 | 184 | 8 | 15 | 301 | 45 | 354 | 1.61e-50 | 172 |
| Msa0995440 | AT1G66020.1 | 35.125 | 279 | 169 | 4 | 29 | 300 | 88 | 361 | 1.94e-50 | 176 |
| Msa0995440 | AT3G25820.2 | 32.372 | 312 | 184 | 8 | 15 | 301 | 45 | 354 | 5.02e-50 | 172 |
| Msa0995440 | AT4G13280.1 | 38.272 | 243 | 139 | 4 | 67 | 301 | 79 | 318 | 1.05e-49 | 172 |
| Msa0995440 | AT4G13280.2 | 38.272 | 243 | 139 | 4 | 67 | 301 | 79 | 318 | 1.35e-49 | 173 |
| Msa0995440 | AT3G25820.1 | 32.372 | 312 | 184 | 8 | 15 | 301 | 45 | 354 | 7.99e-49 | 171 |
| Msa0995440 | AT3G25830.1 | 32.372 | 312 | 184 | 8 | 15 | 301 | 45 | 354 | 7.99e-49 | 171 |
| Msa0995440 | AT3G25810.1 | 32.075 | 318 | 179 | 8 | 15 | 301 | 45 | 356 | 1.66e-44 | 160 |
| Msa0995440 | AT1G48820.1 | 33.876 | 307 | 154 | 8 | 17 | 301 | 63 | 342 | 4.01e-44 | 158 |
| Msa0995440 | AT1G48800.1 | 32.372 | 312 | 180 | 7 | 16 | 301 | 62 | 368 | 3.26e-43 | 156 |
| Msa0995440 | AT1G61680.1 | 33.210 | 271 | 166 | 4 | 40 | 301 | 79 | 343 | 7.92e-40 | 146 |
| Msa0995440 | AT1G61680.2 | 32.472 | 271 | 161 | 5 | 40 | 301 | 79 | 336 | 1.77e-36 | 137 |
| Msa0995440 | AT5G48110.1 | 49.533 | 107 | 53 | 1 | 195 | 300 | 1 | 107 | 8.33e-29 | 113 |
| Msa0995440 | AT4G02780.1 | 27.692 | 260 | 156 | 5 | 52 | 280 | 329 | 587 | 1.56e-22 | 98.2 |
| Msa0995440 | AT1G79460.1 | 27.358 | 318 | 184 | 12 | 24 | 301 | 233 | 543 | 1.60e-19 | 89.4 |
| Msa0995440 | AT1G61120.1 | 26.471 | 272 | 173 | 7 | 52 | 301 | 286 | 552 | 3.42e-14 | 73.6 |
Find 49 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCTTGCTGTGCTATTT+AGG | 0.103456 | 6_4:-71679182 | Msa0995440:CDS |
| TCTACTTGCATTGGCAAAAT+TGG | 0.119753 | 6_4:-71678223 | Msa0995440:CDS |
| TTCTCTTGCTGTGCTATTTA+GGG | 0.189824 | 6_4:-71679181 | Msa0995440:CDS |
| TTTCCTTGCTTGAGAATATT+GGG | 0.241792 | 6_4:+71677950 | None:intergenic |
| ATGCAAGTAGAATTTCATTA+TGG | 0.248221 | 6_4:+71678235 | None:intergenic |
| AGCCTACATCAAAAGGAATT+TGG | 0.257080 | 6_4:-71678183 | Msa0995440:CDS |
| TACAAGAGTTATGTTCAAAA+TGG | 0.269625 | 6_4:-71679231 | Msa0995440:CDS |
| TCCTTATGCTTCAGAATCTA+TGG | 0.272455 | 6_4:-71679697 | Msa0995440:intron |
| AGACGAAATTAATCAAGTTT+TGG | 0.301364 | 6_4:-71679262 | Msa0995440:CDS |
| GTCATCAATGTATGATAAAA+TGG | 0.310334 | 6_4:+71677908 | None:intergenic |
| CAGATTTCCACCCTAGCGTT+TGG | 0.311610 | 6_4:-71679734 | Msa0995440:CDS |
| AGATTTCCACCCTAGCGTTT+GGG | 0.325288 | 6_4:-71679733 | Msa0995440:CDS |
| TGCAAAACCGATTTCTCATT+AGG | 0.335406 | 6_4:+71679768 | None:intergenic |
| TTCCTTGCTCGTCCTTGAAT+TGG | 0.345275 | 6_4:+71678510 | None:intergenic |
| GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6_4:-71677995 | Msa0995440:CDS |
| TTTACTTGTGTTGCAATAGA+AGG | 0.353785 | 6_4:+71678342 | None:intergenic |
| CATCAATCCTAATGAGAAAT+CGG | 0.381109 | 6_4:-71679775 | Msa0995440:CDS |
| TGCAAGTAGAATTTCATTAT+GGG | 0.387262 | 6_4:+71678236 | None:intergenic |
| GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6_4:+71678257 | None:intergenic |
| GATTGACTCAATATGTCGTT+TGG | 0.390339 | 6_4:-71679304 | Msa0995440:CDS |
| GCTCCAAAGCCTACATCAAA+AGG | 0.450495 | 6_4:-71678190 | Msa0995440:CDS |
| TAATGAAATTCTACTTGCAT+TGG | 0.460272 | 6_4:-71678232 | Msa0995440:CDS |
| GATGACACATATGATGCATA+TGG | 0.467097 | 6_4:-71677891 | Msa0995440:CDS |
| ATTGACTCAATATGTCGTTT+GGG | 0.473862 | 6_4:-71679303 | Msa0995440:CDS |
| ATATTGGGGCTCAAAATATA+CGG | 0.495144 | 6_4:+71677965 | None:intergenic |
| AAGGACTCAATCGGTGGCCA+TGG | 0.495566 | 6_4:+71678361 | None:intergenic |
| CTGTGCTATTTAGGGTGTTG+AGG | 0.502767 | 6_4:-71679173 | Msa0995440:CDS |
| CATGGACTTTACGTTTCACC+TGG | 0.512238 | 6_4:-71679147 | Msa0995440:intron |
| AGATGTGTTCAACCAATTCA+AGG | 0.513117 | 6_4:-71678522 | Msa0995440:CDS |
| ACCATAGATTCTGAAGCATA+AGG | 0.518574 | 6_4:+71679696 | None:intergenic |
| TAACTTCTTGCCACTAGCCT+AGG | 0.521919 | 6_4:+71678285 | None:intergenic |
| GCCTCACATATGATGGTTCA+TGG | 0.522278 | 6_4:-71678434 | Msa0995440:CDS |
| ATATAGGTGGTGGAAGGAGT+TGG | 0.524102 | 6_4:-71678051 | Msa0995440:intron |
| AACATTGGTCAGAGATGTTG+AGG | 0.533818 | 6_4:-71678477 | Msa0995440:CDS |
| TTCCTTGCTTGAGAATATTG+GGG | 0.534381 | 6_4:+71677951 | None:intergenic |
| AGCCCCAATATTCTCAAGCA+AGG | 0.547455 | 6_4:-71677953 | Msa0995440:CDS |
| TTTAGGGTGTTGAGGCAACA+TGG | 0.552007 | 6_4:-71679165 | Msa0995440:CDS |
| TTGCAATAGAAGGACTCAAT+CGG | 0.562478 | 6_4:+71678352 | None:intergenic |
| GTATGAAGCCTCACATATGA+TGG | 0.567934 | 6_4:-71678441 | Msa0995440:CDS |
| ATAGCACAGCAAGAGAATGA+AGG | 0.572946 | 6_4:+71679187 | None:intergenic |
| AGGAAACTTCAGTGAAACAT+TGG | 0.576091 | 6_4:-71678492 | Msa0995440:CDS |
| CTTTATATATAGGTGGTGGA+AGG | 0.588928 | 6_4:-71678057 | Msa0995440:intron |
| ACTACTCTATCTCGTGCATA+CGG | 0.590301 | 6_4:+71678011 | None:intergenic |
| GATTTCCACCCTAGCGTTTG+GGG | 0.596026 | 6_4:-71679732 | Msa0995440:CDS |
| AATCTCCCCAAACGCTAGGG+TGG | 0.601357 | 6_4:+71679727 | None:intergenic |
| AACCAATTCAAGGACGAGCA+AGG | 0.615624 | 6_4:-71678512 | Msa0995440:CDS |
| ACCATGAACCATCATATGTG+AGG | 0.634158 | 6_4:+71678433 | None:intergenic |
| ACATTGGTCAGAGATGTTGA+GGG | 0.666287 | 6_4:-71678476 | Msa0995440:CDS |
| CAATAGAAGGACTCAATCGG+TGG | 0.683345 | 6_4:+71678355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTATGTTTTTAATT+TGG | - | chr6_4:71678571-71678590 | Msa0995440:intron | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | - | chr6_4:71678939-71678958 | Msa0995440:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | - | chr6_4:71679597-71679616 | Msa0995440:intron | 10.0% |
| !!! | CATTTTTTATGTTTTTAATT+TGG | - | chr6_4:71678571-71678590 | Msa0995440:intron | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | - | chr6_4:71678939-71678958 | Msa0995440:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | - | chr6_4:71679597-71679616 | Msa0995440:intron | 10.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | + | chr6_4:71678120-71678139 | None:intergenic | 15.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | - | chr6_4:71678285-71678304 | Msa0995440:CDS | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | - | chr6_4:71678703-71678722 | Msa0995440:intron | 15.0% |
| !!! | AAAATTCTCTTTTTACTAAA+AGG | + | chr6_4:71678751-71678770 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | - | chr6_4:71679101-71679120 | Msa0995440:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | + | chr6_4:71679535-71679554 | None:intergenic | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | + | chr6_4:71679593-71679612 | None:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | + | chr6_4:71678120-71678139 | None:intergenic | 15.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | - | chr6_4:71678285-71678304 | Msa0995440:CDS | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | - | chr6_4:71678703-71678722 | Msa0995440:intron | 15.0% |
| !!! | AAAATTCTCTTTTTACTAAA+AGG | + | chr6_4:71678751-71678770 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | - | chr6_4:71679101-71679120 | Msa0995440:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | + | chr6_4:71679535-71679554 | None:intergenic | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | + | chr6_4:71679593-71679612 | None:intergenic | 15.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | + | chr6_4:71678193-71678212 | None:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | - | chr6_4:71678237-71678256 | Msa0995440:CDS | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | + | chr6_4:71678879-71678898 | None:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | - | chr6_4:71678951-71678970 | Msa0995440:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | - | chr6_4:71679600-71679619 | Msa0995440:intron | 20.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | + | chr6_4:71678193-71678212 | None:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | - | chr6_4:71678237-71678256 | Msa0995440:CDS | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | + | chr6_4:71678879-71678898 | None:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | - | chr6_4:71678951-71678970 | Msa0995440:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | - | chr6_4:71679600-71679619 | Msa0995440:intron | 20.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | - | chr6_4:71678402-71678421 | Msa0995440:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | - | chr6_4:71678433-71678452 | Msa0995440:CDS | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | + | chr6_4:71678538-71678557 | None:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | - | chr6_4:71678602-71678621 | Msa0995440:intron | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | - | chr6_4:71678674-71678693 | Msa0995440:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | + | chr6_4:71679431-71679450 | None:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | + | chr6_4:71679432-71679451 | None:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | - | chr6_4:71679432-71679451 | Msa0995440:intron | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | + | chr6_4:71679759-71679778 | None:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | - | chr6_4:71678402-71678421 | Msa0995440:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | - | chr6_4:71678433-71678452 | Msa0995440:CDS | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | + | chr6_4:71678538-71678557 | None:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | - | chr6_4:71678602-71678621 | Msa0995440:intron | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | - | chr6_4:71678674-71678693 | Msa0995440:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | + | chr6_4:71679431-71679450 | None:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | + | chr6_4:71679432-71679451 | None:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | - | chr6_4:71679432-71679451 | Msa0995440:intron | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | + | chr6_4:71679759-71679778 | None:intergenic | 25.0% |
| CATCAATCCTAATGAGAAAT+CGG | - | chr6_4:71677889-71677908 | Msa0995440:CDS | 30.0% | |
| !! | AATAGTGATTGAAGAGTACT+AGG | - | chr6_4:71678032-71678051 | Msa0995440:CDS | 30.0% |
| AATGTGAGTAACTTGAATCT+GGG | + | chr6_4:71678095-71678114 | None:intergenic | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | + | chr6_4:71678096-71678115 | None:intergenic | 30.0% | |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | - | chr6_4:71678162-71678181 | Msa0995440:intron | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | + | chr6_4:71678343-71678362 | None:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | + | chr6_4:71678344-71678363 | None:intergenic | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | - | chr6_4:71678361-71678380 | Msa0995440:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | - | chr6_4:71678673-71678692 | Msa0995440:intron | 30.0% |
| ATGTGAACATTACACAGATA+AGG | + | chr6_4:71678856-71678875 | None:intergenic | 30.0% | |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | + | chr6_4:71678993-71679012 | None:intergenic | 30.0% |
| GGTTCATGGTGAAAAAATAT+TGG | - | chr6_4:71679244-71679263 | Msa0995440:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | - | chr6_4:71679250-71679269 | Msa0995440:CDS | 30.0% | |
| TTTACTTGTGTTGCAATAGA+AGG | + | chr6_4:71679325-71679344 | None:intergenic | 30.0% | |
| ! | TTCCAAATTCCTTTTGATGT+AGG | + | chr6_4:71679486-71679505 | None:intergenic | 30.0% |
| TTGTCTTTATATATAGGTGG+TGG | - | chr6_4:71679603-71679622 | Msa0995440:intron | 30.0% | |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | - | chr6_4:71679670-71679689 | Msa0995440:intron | 30.0% |
| ATATTGGGGCTCAAAATATA+CGG | + | chr6_4:71679702-71679721 | None:intergenic | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | + | chr6_4:71679717-71679736 | None:intergenic | 30.0% | |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | + | chr6_4:71679718-71679737 | None:intergenic | 30.0% |
| CATCAATCCTAATGAGAAAT+CGG | - | chr6_4:71677889-71677908 | Msa0995440:CDS | 30.0% | |
| !! | AATAGTGATTGAAGAGTACT+AGG | - | chr6_4:71678032-71678051 | Msa0995440:CDS | 30.0% |
| AATGTGAGTAACTTGAATCT+GGG | + | chr6_4:71678095-71678114 | None:intergenic | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | + | chr6_4:71678096-71678115 | None:intergenic | 30.0% | |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | - | chr6_4:71678162-71678181 | Msa0995440:intron | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | + | chr6_4:71678343-71678362 | None:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | + | chr6_4:71678344-71678363 | None:intergenic | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | - | chr6_4:71678361-71678380 | Msa0995440:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | - | chr6_4:71678673-71678692 | Msa0995440:intron | 30.0% |
| ATGTGAACATTACACAGATA+AGG | + | chr6_4:71678856-71678875 | None:intergenic | 30.0% | |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | + | chr6_4:71678993-71679012 | None:intergenic | 30.0% |
| GGTTCATGGTGAAAAAATAT+TGG | - | chr6_4:71679244-71679263 | Msa0995440:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | - | chr6_4:71679250-71679269 | Msa0995440:CDS | 30.0% | |
| TTTACTTGTGTTGCAATAGA+AGG | + | chr6_4:71679325-71679344 | None:intergenic | 30.0% | |
| ! | TTCCAAATTCCTTTTGATGT+AGG | + | chr6_4:71679486-71679505 | None:intergenic | 30.0% |
| TTGTCTTTATATATAGGTGG+TGG | - | chr6_4:71679603-71679622 | Msa0995440:intron | 30.0% | |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | - | chr6_4:71679670-71679689 | Msa0995440:intron | 30.0% |
| ATATTGGGGCTCAAAATATA+CGG | + | chr6_4:71679702-71679721 | None:intergenic | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | + | chr6_4:71679717-71679736 | None:intergenic | 30.0% | |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | + | chr6_4:71679718-71679737 | None:intergenic | 30.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | + | chr6_4:71677899-71677918 | None:intergenic | 35.0% |
| TCCTTATGCTTCAGAATCTA+TGG | - | chr6_4:71677967-71677986 | Msa0995440:CDS | 35.0% | |
| !! | ACCATAGATTCTGAAGCATA+AGG | + | chr6_4:71677971-71677990 | None:intergenic | 35.0% |
| GAATCTGGGCTAATATTAAG+TGG | + | chr6_4:71678081-71678100 | None:intergenic | 35.0% | |
| ! | GATTGACTCAATATGTCGTT+TGG | - | chr6_4:71678360-71678379 | Msa0995440:CDS | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | - | chr6_4:71678482-71678501 | Msa0995440:CDS | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | - | chr6_4:71678483-71678502 | Msa0995440:CDS | 35.0% |
| AAAGGTTTACAAGCTAACAG+TGG | + | chr6_4:71678733-71678752 | None:intergenic | 35.0% | |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | + | chr6_4:71678994-71679013 | None:intergenic | 35.0% |
| AGATGTGTTCAACCAATTCA+AGG | - | chr6_4:71679142-71679161 | Msa0995440:intron | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | - | chr6_4:71679172-71679191 | Msa0995440:CDS | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | - | chr6_4:71679256-71679275 | Msa0995440:CDS | 35.0% |
| TTGCAATAGAAGGACTCAAT+CGG | + | chr6_4:71679315-71679334 | None:intergenic | 35.0% | |
| ! | TCTACTTGCATTGGCAAAAT+TGG | - | chr6_4:71679441-71679460 | Msa0995440:intron | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | + | chr6_4:71679480-71679499 | None:intergenic | 35.0% |
| AGCCTACATCAAAAGGAATT+TGG | - | chr6_4:71679481-71679500 | Msa0995440:intron | 35.0% | |
| !! | CTTTATATATAGGTGGTGGA+AGG | - | chr6_4:71679607-71679626 | Msa0995440:intron | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | - | chr6_4:71679669-71679688 | Msa0995440:intron | 35.0% |
| TTCCTTGCTTGAGAATATTG+GGG | + | chr6_4:71679716-71679735 | None:intergenic | 35.0% | |
| GATGACACATATGATGCATA+TGG | - | chr6_4:71679773-71679792 | Msa0995440:CDS | 35.0% | |
| ! | TGCAAAACCGATTTCTCATT+AGG | + | chr6_4:71677899-71677918 | None:intergenic | 35.0% |
| TCCTTATGCTTCAGAATCTA+TGG | - | chr6_4:71677967-71677986 | Msa0995440:CDS | 35.0% | |
| !! | ACCATAGATTCTGAAGCATA+AGG | + | chr6_4:71677971-71677990 | None:intergenic | 35.0% |
| GAATCTGGGCTAATATTAAG+TGG | + | chr6_4:71678081-71678100 | None:intergenic | 35.0% | |
| ! | GATTGACTCAATATGTCGTT+TGG | - | chr6_4:71678360-71678379 | Msa0995440:CDS | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | - | chr6_4:71678482-71678501 | Msa0995440:CDS | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | - | chr6_4:71678483-71678502 | Msa0995440:CDS | 35.0% |
| AAAGGTTTACAAGCTAACAG+TGG | + | chr6_4:71678733-71678752 | None:intergenic | 35.0% | |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | + | chr6_4:71678994-71679013 | None:intergenic | 35.0% |
| AGATGTGTTCAACCAATTCA+AGG | - | chr6_4:71679142-71679161 | Msa0995440:intron | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | - | chr6_4:71679172-71679191 | Msa0995440:CDS | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | - | chr6_4:71679256-71679275 | Msa0995440:CDS | 35.0% |
| TTGCAATAGAAGGACTCAAT+CGG | + | chr6_4:71679315-71679334 | None:intergenic | 35.0% | |
| ! | TCTACTTGCATTGGCAAAAT+TGG | - | chr6_4:71679441-71679460 | Msa0995440:intron | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | + | chr6_4:71679480-71679499 | None:intergenic | 35.0% |
| AGCCTACATCAAAAGGAATT+TGG | - | chr6_4:71679481-71679500 | Msa0995440:intron | 35.0% | |
| !! | CTTTATATATAGGTGGTGGA+AGG | - | chr6_4:71679607-71679626 | Msa0995440:intron | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | - | chr6_4:71679669-71679688 | Msa0995440:intron | 35.0% |
| TTCCTTGCTTGAGAATATTG+GGG | + | chr6_4:71679716-71679735 | None:intergenic | 35.0% | |
| GATGACACATATGATGCATA+TGG | - | chr6_4:71679773-71679792 | Msa0995440:CDS | 35.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | + | chr6_4:71677943-71677962 | None:intergenic | 40.0% | |
| AAAAAATCTCCCCAAACGCT+AGG | + | chr6_4:71677944-71677963 | None:intergenic | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | - | chr6_4:71678258-71678277 | Msa0995440:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | - | chr6_4:71678324-71678343 | Msa0995440:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | + | chr6_4:71678480-71678499 | None:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | - | chr6_4:71678813-71678832 | Msa0995440:intron | 40.0% |
| AACATTGGTCAGAGATGTTG+AGG | - | chr6_4:71679187-71679206 | Msa0995440:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | - | chr6_4:71679188-71679207 | Msa0995440:CDS | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | - | chr6_4:71679223-71679242 | Msa0995440:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | + | chr6_4:71679234-71679253 | None:intergenic | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | + | chr6_4:71679410-71679429 | None:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | + | chr6_4:71679656-71679675 | None:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | + | chr6_4:71677943-71677962 | None:intergenic | 40.0% | |
| AAAAAATCTCCCCAAACGCT+AGG | + | chr6_4:71677944-71677963 | None:intergenic | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | - | chr6_4:71678258-71678277 | Msa0995440:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | - | chr6_4:71678324-71678343 | Msa0995440:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | + | chr6_4:71678480-71678499 | None:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | - | chr6_4:71678813-71678832 | Msa0995440:intron | 40.0% |
| AACATTGGTCAGAGATGTTG+AGG | - | chr6_4:71679187-71679206 | Msa0995440:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | - | chr6_4:71679188-71679207 | Msa0995440:CDS | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | - | chr6_4:71679223-71679242 | Msa0995440:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | + | chr6_4:71679234-71679253 | None:intergenic | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | + | chr6_4:71679410-71679429 | None:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | + | chr6_4:71679656-71679675 | None:intergenic | 40.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | - | chr6_4:71677931-71677950 | Msa0995440:CDS | 45.0% | |
| TGTGCCGCAGTATTCATATC+AGG | + | chr6_4:71678265-71678284 | None:intergenic | 45.0% | |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | - | chr6_4:71678491-71678510 | Msa0995440:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | - | chr6_4:71678499-71678518 | Msa0995440:CDS | 45.0% |
| CATGGACTTTACGTTTCACC+TGG | - | chr6_4:71678517-71678536 | Msa0995440:CDS | 45.0% | |
| AACCAATTCAAGGACGAGCA+AGG | - | chr6_4:71679152-71679171 | Msa0995440:CDS | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | + | chr6_4:71679157-71679176 | None:intergenic | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | - | chr6_4:71679230-71679249 | Msa0995440:CDS | 45.0% | |
| CAATAGAAGGACTCAATCGG+TGG | + | chr6_4:71679312-71679331 | None:intergenic | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | - | chr6_4:71679369-71679388 | Msa0995440:intron | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | + | chr6_4:71679382-71679401 | None:intergenic | 45.0% |
| GCTCCAAAGCCTACATCAAA+AGG | - | chr6_4:71679474-71679493 | Msa0995440:intron | 45.0% | |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | - | chr6_4:71679613-71679632 | Msa0995440:intron | 45.0% |
| AGCCCCAATATTCTCAAGCA+AGG | - | chr6_4:71679711-71679730 | Msa0995440:CDS | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | - | chr6_4:71677931-71677950 | Msa0995440:CDS | 45.0% | |
| TGTGCCGCAGTATTCATATC+AGG | + | chr6_4:71678265-71678284 | None:intergenic | 45.0% | |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | - | chr6_4:71678491-71678510 | Msa0995440:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | - | chr6_4:71678499-71678518 | Msa0995440:CDS | 45.0% |
| CATGGACTTTACGTTTCACC+TGG | - | chr6_4:71678517-71678536 | Msa0995440:CDS | 45.0% | |
| AACCAATTCAAGGACGAGCA+AGG | - | chr6_4:71679152-71679171 | Msa0995440:CDS | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | + | chr6_4:71679157-71679176 | None:intergenic | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | - | chr6_4:71679230-71679249 | Msa0995440:CDS | 45.0% | |
| CAATAGAAGGACTCAATCGG+TGG | + | chr6_4:71679312-71679331 | None:intergenic | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | - | chr6_4:71679369-71679388 | Msa0995440:intron | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | + | chr6_4:71679382-71679401 | None:intergenic | 45.0% |
| GCTCCAAAGCCTACATCAAA+AGG | - | chr6_4:71679474-71679493 | Msa0995440:intron | 45.0% | |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | - | chr6_4:71679613-71679632 | Msa0995440:intron | 45.0% |
| AGCCCCAATATTCTCAAGCA+AGG | - | chr6_4:71679711-71679730 | Msa0995440:CDS | 45.0% | |
| !!! | ATTTTTTTTTTACATAAAAT+AGG | - | chr6_4:71678793-71678812 | Msa0995440:intron | 5.0% |
| !!! | ATTTTTTTTTTACATAAAAT+AGG | - | chr6_4:71678793-71678812 | Msa0995440:intron | 5.0% |
| CAGATTTCCACCCTAGCGTT+TGG | - | chr6_4:71677930-71677949 | Msa0995440:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | - | chr6_4:71677932-71677951 | Msa0995440:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | - | chr6_4:71679269-71679288 | Msa0995440:CDS | 50.0% |
| TTCTGGTCACCTTGAGTCCA+TGG | - | chr6_4:71679286-71679305 | Msa0995440:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | - | chr6_4:71679362-71679381 | Msa0995440:intron | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | - | chr6_4:71677930-71677949 | Msa0995440:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | - | chr6_4:71677932-71677951 | Msa0995440:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | - | chr6_4:71679269-71679288 | Msa0995440:CDS | 50.0% |
| TTCTGGTCACCTTGAGTCCA+TGG | - | chr6_4:71679286-71679305 | Msa0995440:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | - | chr6_4:71679362-71679381 | Msa0995440:intron | 50.0% | |
| AATCTCCCCAAACGCTAGGG+TGG | + | chr6_4:71677940-71677959 | None:intergenic | 55.0% | |
| AATCGGTGGCCATGGACTCA+AGG | + | chr6_4:71679298-71679317 | None:intergenic | 55.0% | |
| AAGGACTCAATCGGTGGCCA+TGG | + | chr6_4:71679306-71679325 | None:intergenic | 55.0% | |
| AATCTCCCCAAACGCTAGGG+TGG | + | chr6_4:71677940-71677959 | None:intergenic | 55.0% | |
| AATCGGTGGCCATGGACTCA+AGG | + | chr6_4:71679298-71679317 | None:intergenic | 55.0% | |
| AAGGACTCAATCGGTGGCCA+TGG | + | chr6_4:71679306-71679325 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 71677872 | 71679814 | 71677872 | ID=Msa0995440;Name=Msa0995440 |
| chr6_4 | mRNA | 71677872 | 71679814 | 71677872 | ID=Msa0995440-mRNA-1;Parent=Msa0995440;Name=Msa0995440-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0.25|0.2|5|0|301 |
| chr6_4 | exon | 71679698 | 71679814 | 71679698 | ID=Msa0995440-mRNA-1:exon:13352;Parent=Msa0995440-mRNA-1 |
| chr6_4 | exon | 71679148 | 71679379 | 71679148 | ID=Msa0995440-mRNA-1:exon:13351;Parent=Msa0995440-mRNA-1 |
| chr6_4 | exon | 71678396 | 71678542 | 71678396 | ID=Msa0995440-mRNA-1:exon:13350;Parent=Msa0995440-mRNA-1 |
| chr6_4 | exon | 71678171 | 71678384 | 71678171 | ID=Msa0995440-mRNA-1:exon:13349;Parent=Msa0995440-mRNA-1 |
| chr6_4 | exon | 71677872 | 71678067 | 71677872 | ID=Msa0995440-mRNA-1:exon:13348;Parent=Msa0995440-mRNA-1 |
| chr6_4 | CDS | 71679698 | 71679814 | 71679698 | ID=Msa0995440-mRNA-1:cds;Parent=Msa0995440-mRNA-1 |
| chr6_4 | CDS | 71679148 | 71679379 | 71679148 | ID=Msa0995440-mRNA-1:cds;Parent=Msa0995440-mRNA-1 |
| chr6_4 | CDS | 71678396 | 71678542 | 71678396 | ID=Msa0995440-mRNA-1:cds;Parent=Msa0995440-mRNA-1 |
| chr6_4 | CDS | 71678171 | 71678384 | 71678171 | ID=Msa0995440-mRNA-1:cds;Parent=Msa0995440-mRNA-1 |
| chr6_4 | CDS | 71677872 | 71678067 | 71677872 | ID=Msa0995440-mRNA-1:cds;Parent=Msa0995440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
