AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563330 MtrunA17_Chr8g0377241 97.423 388 10 0 1 388 1 388 0.0 784
Msa0563330 MtrunA17_Chr3g0122681 76.267 375 84 2 16 388 1 372 0.0 594
Msa0563330 MtrunA17_Chr4g0063531 30.631 333 210 11 26 346 41 364 3.55e-35 134
Msa0563330 MtrunA17_Chr8g0378511 30.325 277 179 7 50 320 76 344 2.10e-31 124
Msa0563330 MtrunA17_Chr8g0348991 29.900 301 184 11 36 322 9 296 1.72e-29 117
Msa0563330 MtrunA17_Chr2g0285851 30.124 322 195 11 16 325 31 334 1.18e-27 112
Msa0563330 MtrunA17_Chr4g0060541 23.404 329 223 7 37 346 17 335 1.20e-22 98.2
Msa0563330 MtrunA17_Chr7g0260051 30.876 217 135 5 49 254 2 214 3.15e-22 96.7
Msa0563330 MtrunA17_Chr2g0326541 25.556 360 237 10 37 379 3 348 3.43e-22 96.7
Msa0563330 MtrunA17_Chr2g0278921 24.383 324 203 8 29 323 21 331 1.23e-21 96.3
Msa0563330 MtrunA17_Chr4g0011151 24.847 326 208 8 43 346 93 403 5.15e-21 94.4
Msa0563330 MtrunA17_Chr4g0011221 24.847 326 208 8 43 346 93 403 1.27e-20 93.2
Msa0563330 MtrunA17_Chr4g0010131 24.451 364 237 10 43 386 63 408 1.67e-20 92.4
Msa0563330 MtrunA17_Chr4g0011171 24.540 326 209 8 43 346 93 403 2.27e-20 92.4
Msa0563330 MtrunA17_Chr4g0011161 24.159 327 209 8 43 346 93 403 3.06e-20 92.0
Msa0563330 MtrunA17_Chr4g0011191 27.778 234 144 6 43 265 93 312 5.35e-19 87.0
Msa0563330 MtrunA17_Chr4g0010161 22.741 321 221 7 42 346 59 368 9.09e-19 87.4
Msa0563330 MtrunA17_Chr5g0416461 26.033 242 160 5 47 283 125 352 2.74e-16 80.1
Msa0563330 MtrunA17_Chr8g0362081 26.923 234 146 6 58 283 157 373 4.02e-16 79.7
Msa0563330 MtrunA17_Chr6g0459491 23.913 322 202 12 52 346 57 362 2.31e-14 73.9
Msa0563330 MtrunA17_Chr2g0281551 37.113 97 59 1 162 256 102 198 2.33e-14 73.9
Msa0563330 MtrunA17_Chr3g0129221 26.389 216 148 5 46 257 4 212 5.51e-13 69.7
Msa0563330 MtrunA17_Chr8g0378571 22.979 235 163 3 45 263 1 233 7.88e-13 68.9
Msa0563330 MtrunA17_Chr7g0243481 29.310 174 116 5 130 301 97 265 2.32e-12 67.8
Msa0563330 MtrunA17_Chr7g0243481 30.872 149 94 5 131 278 147 287 3.19e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563330 AT1G67480.3 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0563330 AT1G67480.1 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0563330 AT1G67480.2 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0563330 AT1G27420.1 40.678 354 187 8 44 386 3 344 2.69e-86 266
Msa0563330 AT1G55270.1 31.541 279 171 9 50 319 77 344 3.40e-34 132
Msa0563330 AT1G30090.1 28.421 285 191 7 50 325 52 332 1.02e-24 104
Msa0563330 AT5G60570.2 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0563330 AT5G60570.1 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0563330 AT5G60570.3 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0563330 AT2G24540.1 25.000 312 213 7 21 322 1 301 2.05e-23 100
Msa0563330 AT3G61350.2 27.076 277 182 9 51 319 21 285 2.78e-23 100
Msa0563330 AT3G61350.1 27.076 277 182 9 51 319 21 285 2.78e-23 100
Msa0563330 AT1G16250.2 26.230 244 164 6 51 283 8 246 2.52e-22 97.8
Msa0563330 AT1G16250.1 26.230 244 164 6 51 283 8 246 2.52e-22 97.8
Msa0563330 AT1G55270.2 29.075 227 141 9 102 319 3 218 9.41e-20 89.4
Msa0563330 AT3G63220.1 30.876 217 135 5 49 254 2 214 2.36e-19 89.0
Msa0563330 AT3G63220.3 30.876 217 135 5 49 254 9 221 2.47e-19 89.0
Msa0563330 AT3G63220.2 30.876 217 135 5 49 254 9 221 2.47e-19 89.0
Msa0563330 AT3G27150.2 25.610 328 203 11 64 366 83 394 8.99e-19 87.8
Msa0563330 AT3G27150.1 25.610 328 203 11 64 366 83 394 8.99e-19 87.8
Msa0563330 AT1G22040.1 25.916 382 193 14 51 354 43 412 1.47e-18 87.4
Msa0563330 AT2G21950.1 26.780 295 185 11 42 320 9 288 7.23e-18 84.7
Msa0563330 AT1G26930.1 28.251 223 144 4 38 256 57 267 1.01e-17 84.7
Msa0563330 AT1G74510.2 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0563330 AT1G74510.1 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0563330 AT1G74510.3 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0563330 AT1G26930.2 28.986 207 129 5 38 239 57 250 7.65e-17 81.6
Msa0563330 AT5G26960.1 27.675 271 157 10 47 293 39 294 2.14e-16 80.9
Msa0563330 AT5G01660.2 28.990 307 171 16 56 335 362 648 2.16e-16 81.3
Msa0563330 AT5G01660.1 28.990 307 171 16 56 335 362 648 2.16e-16 81.3
Msa0563330 AT2G44130.1 24.907 269 164 6 51 283 19 285 2.94e-16 80.1
Msa0563330 AT4G03030.1 30.317 221 129 7 45 242 32 250 4.70e-16 79.7
Msa0563330 AT1G80440.1 27.160 243 160 6 51 278 3 243 1.21e-15 78.2
Msa0563330 AT1G14330.1 23.529 221 159 3 37 256 80 291 3.30e-14 74.3
Msa0563330 AT2G02870.2 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0563330 AT2G02870.3 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0563330 AT2G02870.1 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0563330 AT3G46050.1 28.022 182 120 5 52 229 18 192 2.74e-13 70.9
Msa0563330 AT5G40680.1 22.951 305 195 12 53 334 64 351 3.37e-13 70.9
Msa0563330 AT1G15670.1 25.911 247 162 7 51 278 3 247 3.03e-11 64.7

Find 147 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATAGCCCTATTCTTTC+TGG 0.085042 4_1:-63662878 Msa0563330:CDS
GATTGATTGTGTGTAATTTC+TGG 0.201268 4_1:-63663046 Msa0563330:five_prime_UTR
GGTCCAAGGAAGGCTGGGTT+TGG 0.218814 4_1:-63662608 Msa0563330:CDS
CAGATGCAGTAAACCCTTTC+AGG 0.220682 4_1:+63661747 None:intergenic
AAAGTTTGCATCCACAATTT+TGG 0.223938 4_1:-63661641 Msa0563330:three_prime_UTR
TTAGATTATGATATTGTTTA+CGG 0.244192 4_1:-63663625 None:intergenic
GTTTATGCTGTTGGAGGATA+TGG 0.248326 4_1:-63662303 Msa0563330:CDS
GGCTGAATAAATCAACTAAT+TGG 0.251357 4_1:+63663211 None:intergenic
AGGAAGTCATTGGGAGGTTA+TGG 0.260241 4_1:-63662672 Msa0563330:CDS
GTCCAAGGAAGGCTGGGTTT+GGG 0.265699 4_1:-63662607 Msa0563330:CDS
CTTCTCTTGATTCACCATAT+TGG 0.268458 4_1:+63662961 None:intergenic
GAAGGCTGGGTTTGGGGTTG+TGG 0.291666 4_1:-63662600 Msa0563330:CDS
TCACACCCCGGCTCTGCATT+TGG 0.312589 4_1:+63661829 None:intergenic
TGTCAAGGTTGGAATTATAT+TGG 0.317167 4_1:+63662501 None:intergenic
TAACGGAAAGCTTCTTGTTA+TGG 0.323843 4_1:-63662573 Msa0563330:CDS
AGCACATAAATATATTCAAT+TGG 0.351012 4_1:+63663499 None:intergenic
GAGGTTATCTGAAAAGCTTA+TGG 0.353926 4_1:-63663430 Msa0563330:five_prime_UTR
GCATTGTTTGGTTGATTGAT+TGG 0.363200 4_1:-63663095 Msa0563330:five_prime_UTR
TCCATCCAACTATGCTTCTC+AGG 0.366765 4_1:+63662093 None:intergenic
ATGCTTTGCCTGTGGATTAG+AGG 0.368919 4_1:-63662187 Msa0563330:CDS
CAAGTATGATTGTAGTGTAC+AGG 0.376294 4_1:-63661673 Msa0563330:three_prime_UTR
GAATATATTTATGTGCTGTT+TGG 0.377607 4_1:-63663493 Msa0563330:five_prime_UTR
ATGATAGCCCTATTCTTTCT+GGG 0.386607 4_1:-63662877 Msa0563330:CDS
TGGGAGGTTATGGATTCATT+TGG 0.394308 4_1:-63662662 Msa0563330:CDS
GTGAAGGAAAAGGAAGTCAT+TGG 0.394801 4_1:-63662682 Msa0563330:CDS
TCAATCCAGATGATAATTCA+TGG 0.397099 4_1:-63661975 Msa0563330:CDS
ACCCCAAACCCAGCCTTCCT+TGG 0.402488 4_1:+63662605 None:intergenic
ACTGATCATGGATACATCAT+TGG 0.404162 4_1:+63663585 None:intergenic
GCCTTCCTTGGACCAGGCAT+TGG 0.406760 4_1:+63662617 None:intergenic
TCGTTCTAACTTCCTAGCTA+TGG 0.419133 4_1:-63662813 Msa0563330:CDS
TTTGGGGTTGTGGTTCTTAA+CGG 0.421717 4_1:-63662590 Msa0563330:CDS
AAGCTTATGGAAATAGATTA+CGG 0.426994 4_1:-63663417 Msa0563330:five_prime_UTR
TTTAGATTTGGGATACTGAA+TGG 0.434123 4_1:-63661910 Msa0563330:CDS
AATGGCTTGGTTTATGCTGT+TGG 0.435481 4_1:-63662312 Msa0563330:CDS
ACTCTCTTCAAGTTTCATAT+CGG 0.436144 4_1:+63663190 None:intergenic
CAACACTCGAACTCCCCGTC+AGG 0.438512 4_1:+63661935 None:intergenic
AATATAATTCCAACCTTGAC+AGG 0.440168 4_1:-63662499 Msa0563330:intron
AGAAAAGAAGTTGTTCTGTA+TGG 0.440457 4_1:-63662028 Msa0563330:CDS
ATGCCTGGTCCAAGGAAGGC+TGG 0.443856 4_1:-63662614 Msa0563330:CDS
CAATGCTTTGAAACATCATC+AGG 0.446862 4_1:+63662851 None:intergenic
GAACTCCCCGTCAGGGGTAC+TGG 0.449360 4_1:+63661943 None:intergenic
TCCAAGGAAGGCTGGGTTTG+GGG 0.450800 4_1:-63662606 Msa0563330:CDS
CAGGCAAAGCATCCCCATCT+TGG 0.451057 4_1:+63662198 None:intergenic
CAGGGAGCCCAGAAAGAATA+GGG 0.456054 4_1:+63662870 None:intergenic
TCAGGGAGCCCAGAAAGAAT+AGG 0.456310 4_1:+63662869 None:intergenic
TTCCTTGGACCAGGCATTGG+TGG 0.456385 4_1:+63662620 None:intergenic
CATGTTCAAATGACCTATAC+TGG 0.462281 4_1:-63663141 Msa0563330:five_prime_UTR
CGATCTCTTCCACCAATGCC+TGG 0.465067 4_1:-63662629 Msa0563330:CDS
ATAAACATTTATCATATAAG+TGG 0.467994 4_1:+63663297 None:intergenic
TTTGCTTGTGCAGAAGTCAA+TGG 0.468117 4_1:-63662330 Msa0563330:CDS
GCACATAAATATATTCAATT+GGG 0.474265 4_1:+63663500 None:intergenic
ACTGTCCACTTGTCAGTATC+CGG 0.476238 4_1:+63662240 None:intergenic
ATAACCGTGCGAAAGTTGGC+TGG 0.478182 4_1:-63662743 Msa0563330:CDS
TGCAGAGCCGGGGTGTGAGT+GGG 0.483079 4_1:-63661824 Msa0563330:CDS
CGGATCATAAACCTCGGCGC+TGG 0.483389 4_1:+63662260 None:intergenic
ATGCAGAGCCGGGGTGTGAG+TGG 0.485645 4_1:-63661825 Msa0563330:CDS
TAGAGTTGGCAATGGAGTTA+CGG 0.487288 4_1:-63661709 Msa0563330:three_prime_UTR
GGAAGGTCGAGCTTCACAAT+TGG 0.490581 4_1:-63662144 Msa0563330:CDS
AGTTACAGTTGGCCGAGGCT+TGG 0.491656 4_1:-63663164 Msa0563330:five_prime_UTR
AGATGATAATTCATGGAAAA+CGG 0.492908 4_1:-63661968 Msa0563330:CDS
CGTTCTAACTTCCTAGCTAT+GGG 0.493297 4_1:-63662812 Msa0563330:CDS
GGAAAGCTTCTTGTTATGGC+TGG 0.494684 4_1:-63662569 Msa0563330:CDS
CTGATCATGGATACATCATT+GGG 0.499398 4_1:+63663586 None:intergenic
TGAAGGAAGATCCTACATAT+AGG 0.500461 4_1:-63661867 Msa0563330:CDS
ACTACTGATATAAAACCATC+TGG 0.501116 4_1:-63661799 Msa0563330:CDS
ACAACCCTGAGAAGCATAGT+TGG 0.505267 4_1:-63662098 Msa0563330:CDS
AACCCAGCCTTCCTTGGACC+AGG 0.506388 4_1:+63662611 None:intergenic
GTATGATCCAAATGCAGAGC+CGG 0.507910 4_1:-63661836 Msa0563330:CDS
GTTATATATTTCTATAACAA+AGG 0.508050 4_1:+63663319 None:intergenic
ACAGCTGATAGTGAAGGAAA+AGG 0.509911 4_1:-63662692 Msa0563330:CDS
ATTCATAACCGTGCGAAAGT+TGG 0.517003 4_1:-63662747 Msa0563330:CDS
CTCCATTGCCAACTCTATCA+AGG 0.517201 4_1:+63661715 None:intergenic
GGCTTGGTTTATGCTGTTGG+AGG 0.520648 4_1:-63662309 Msa0563330:CDS
TATGATCCAAATGCAGAGCC+GGG 0.520838 4_1:-63661835 Msa0563330:CDS
TGCTTTGCCTGTGGATTAGA+GGG 0.520938 4_1:-63662186 Msa0563330:CDS
TGAAGGAAAAGGAAGTCATT+GGG 0.524940 4_1:-63662681 Msa0563330:CDS
TGGCTGGGCTGCTTGAGGAG+TGG 0.526642 4_1:-63662727 Msa0563330:CDS
TTCTTGACAGCCACAAAACC+AGG 0.528566 4_1:+63663013 None:intergenic
GAGCCTACGTCGTCCAAGAT+GGG 0.534088 4_1:-63662211 Msa0563330:CDS
TGCCTGGTCCAAGGAAGGCT+GGG 0.535078 4_1:-63662613 Msa0563330:CDS
AGAGCCTACGTCGTCCAAGA+TGG 0.538278 4_1:-63662212 Msa0563330:CDS
ACGGTACCAGTACCCCTGAC+GGG 0.539002 4_1:-63661949 Msa0563330:CDS
GTAACTATCAAGGCCTGAAA+GGG 0.541292 4_1:-63661760 Msa0563330:exon
AGAGGGCAAGCTCTATGTGA+TGG 0.545728 4_1:-63662169 Msa0563330:CDS
AACTGTTTCTGTTTCAGCAG+AGG 0.545805 4_1:-63662528 Msa0563330:CDS
TGGGCGGTGTTTGTAAGAGA+TGG 0.546805 4_1:-63662793 Msa0563330:CDS
CAGCGCCGAGGTTTATGATC+CGG 0.546819 4_1:-63662259 Msa0563330:CDS
GAAATGCTTTATTCAAAGCA+AGG 0.547489 4_1:-63662771 Msa0563330:CDS
GCTGGCTATTCATCAACTGA+TGG 0.551443 4_1:-63662551 Msa0563330:CDS
CAGGCATTGGTGGAAGAGAT+CGG 0.553729 4_1:+63662630 None:intergenic
GCAGAGCCGGGGTGTGAGTG+GGG 0.555640 4_1:-63661823 Msa0563330:CDS
AGCTCTATGTGATGGGTGGA+AGG 0.558333 4_1:-63662161 Msa0563330:CDS
TACAAACACCGCCCATAGCT+AGG 0.562469 4_1:+63662801 None:intergenic
GTGAAAGTTACAGTTGGCCG+AGG 0.564811 4_1:-63663169 Msa0563330:five_prime_UTR
ACAAACATACCTGTCAAGGT+TGG 0.565491 4_1:+63662490 None:intergenic
TAGAACGAGGCACGAGTGCA+AGG 0.565540 4_1:+63662828 None:intergenic
CTTGTGCAGTGTAACTATCA+AGG 0.565566 4_1:-63661770 Msa0563330:CDS
TTCCACCAATGCCTGGTCCA+AGG 0.568289 4_1:-63662622 Msa0563330:CDS
AAGTATGATTGTAGTGTACA+GGG 0.569531 4_1:-63661672 Msa0563330:three_prime_UTR
ACCAATGCCTGGTCCAAGGA+AGG 0.569574 4_1:-63662618 Msa0563330:CDS
CTGACGGGGAGTTCGAGTGT+TGG 0.569934 4_1:-63661934 Msa0563330:CDS
AACGGTACCAGTACCCCTGA+CGG 0.571696 4_1:-63661950 Msa0563330:CDS
TGACCACCTTTCAAAAGAGA+TGG 0.572189 4_1:+63662938 None:intergenic
CATTTGAACATGCCAAGCCT+CGG 0.574937 4_1:+63663152 None:intergenic
TGTAACTATCAAGGCCTGAA+AGG 0.575632 4_1:-63661761 Msa0563330:exon
TAATACAAACATACCTGTCA+AGG 0.575774 4_1:+63662486 None:intergenic
TAATGTTGCAGCCAAAATTG+TGG 0.577239 4_1:+63661630 None:intergenic
ACTGAAGACCTTGATAGAGT+TGG 0.578250 4_1:-63661723 Msa0563330:three_prime_UTR
AACACTCGAACTCCCCGTCA+GGG 0.578430 4_1:+63661936 None:intergenic
GAGCTTGCCCTCTAATCCAC+AGG 0.578491 4_1:+63662179 None:intergenic
TACAACAAAGTCCTATATGT+AGG 0.579564 4_1:+63661856 None:intergenic
TTGTGCAGAAGTCAATGGCT+TGG 0.583821 4_1:-63662325 Msa0563330:CDS
CCCTGAGAAGCATAGTTGGA+TGG 0.584644 4_1:-63662094 Msa0563330:CDS
GAGGGCAAGCTCTATGTGAT+GGG 0.587604 4_1:-63662168 Msa0563330:CDS
TGTTGAGTATCAACCAGTAT+AGG 0.588393 4_1:+63663128 None:intergenic
TAACCGTGCGAAAGTTGGCT+GGG 0.589238 4_1:-63662742 Msa0563330:CDS
GACCTTGATAGAGTTGGCAA+TGG 0.591899 4_1:-63661717 Msa0563330:three_prime_UTR
GTATGGAGTGGAAGAATCAA+CGG 0.593792 4_1:-63662011 Msa0563330:CDS
CCATCCAACTATGCTTCTCA+GGG 0.596718 4_1:+63662094 None:intergenic
AAAGTTGGCTGGGCTGCTTG+AGG 0.599240 4_1:-63662732 Msa0563330:CDS
AGATGGGGATGCTTTGCCTG+TGG 0.599321 4_1:-63662195 Msa0563330:CDS
AGAAGTTGTTCTGTATGGAG+TGG 0.605756 4_1:-63662023 Msa0563330:CDS
ATCTTAACAGCTGATAGTGA+AGG 0.613279 4_1:-63662698 Msa0563330:CDS
GGCAAGCTCTATGTGATGGG+TGG 0.613940 4_1:-63662165 Msa0563330:CDS
AAGAGAGTGAAAGTTACAGT+TGG 0.615991 4_1:-63663175 Msa0563330:five_prime_UTR
TGAAAGGTGGTCATAGTGTG+AGG 0.621543 4_1:-63662928 Msa0563330:CDS
CAGATTGTCAAACATGAATG+TGG 0.623397 4_1:-63662364 Msa0563330:CDS
CAGCCCAGCCAACTTTCGCA+CGG 0.624024 4_1:+63662739 None:intergenic
AGCCTACGTCGTCCAAGATG+GGG 0.626968 4_1:-63662210 Msa0563330:CDS
CGGTACCAGTACCCCTGACG+GGG 0.627409 4_1:-63661948 Msa0563330:CDS
CTGCACAAGCACAAACCAGA+TGG 0.631169 4_1:+63661784 None:intergenic
TGTCAAACATGAATGTGGCT+CGG 0.636616 4_1:-63662359 Msa0563330:CDS
TGAAAATAAACTTAACACGA+GGG 0.643434 4_1:+63663389 None:intergenic
GTTGGAGGATATGGAGCAGA+AGG 0.645724 4_1:-63662294 Msa0563330:CDS
ACACTCGAACTCCCCGTCAG+GGG 0.650821 4_1:+63661937 None:intergenic
ATGATCCGGATACTGACAAG+TGG 0.668925 4_1:-63662245 Msa0563330:CDS
TGGTCATAGTGTGAGGTCTG+AGG 0.676031 4_1:-63662921 Msa0563330:CDS
GTAGTTCCCCACTCACACCC+CGG 0.676823 4_1:+63661817 None:intergenic
ATGAAAATAAACTTAACACG+AGG 0.678200 4_1:+63663388 None:intergenic
AATGCTTTGAAACATCATCA+GGG 0.680105 4_1:+63662852 None:intergenic
TCTAACTTCCTAGCTATGGG+CGG 0.680814 4_1:-63662809 Msa0563330:CDS
TGACAGTCTCTCCAGCGCCG+AGG 0.686649 4_1:-63662271 Msa0563330:CDS
AGGAAAAGGAAGTCATTGGG+AGG 0.693227 4_1:-63662678 Msa0563330:CDS
ATGATCCAAATGCAGAGCCG+GGG 0.695271 4_1:-63661834 Msa0563330:CDS
AGTATCCGGATCATAAACCT+CGG 0.700429 4_1:+63662254 None:intergenic
ATCCCCATCTTGGACGACGT+AGG 0.772673 4_1:+63662208 None:intergenic
ATAGCTAGGAAGTTAGAACG+AGG 0.777780 4_1:+63662815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCATAAGTTCTTTT+TGG - chr4_1:63661839-63661858 Msa0563330:CDS 15.0%
!!! GTTATATATTTCTATAACAA+AGG + chr4_1:63661898-63661917 None:intergenic 15.0%
!! ATAAACATTTATCATATAAG+TGG + chr4_1:63661920-63661939 None:intergenic 15.0%
!!! TTATTTTCATAAGTTCTTTT+TGG - chr4_1:63661839-63661858 Msa0563330:CDS 15.0%
!!! GTTATATATTTCTATAACAA+AGG + chr4_1:63661898-63661917 None:intergenic 15.0%
!! ATAAACATTTATCATATAAG+TGG + chr4_1:63661920-63661939 None:intergenic 15.0%
!! TTAAAAATAAATGAATCTGC+AGG + chr4_1:63661680-63661699 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG + chr4_1:63661717-63661736 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG + chr4_1:63661718-63661737 None:intergenic 20.0%
!! TTAAAAATAAATGAATCTGC+AGG + chr4_1:63661680-63661699 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG + chr4_1:63661717-63661736 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG + chr4_1:63661718-63661737 None:intergenic 20.0%
!! GAATATATTTATGTGCTGTT+TGG - chr4_1:63661721-63661740 Msa0563330:three_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG - chr4_1:63661797-63661816 Msa0563330:CDS 25.0%
! TGAAAATAAACTTAACACGA+GGG + chr4_1:63661828-63661847 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG + chr4_1:63661829-63661848 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG + chr4_1:63661995-63662014 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG - chr4_1:63662239-63662258 Msa0563330:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG - chr4_1:63662825-63662844 Msa0563330:CDS 25.0%
! AGATGATAATTCATGGAAAA+CGG - chr4_1:63663246-63663265 Msa0563330:five_prime_UTR 25.0%
!! GAATATATTTATGTGCTGTT+TGG - chr4_1:63661721-63661740 Msa0563330:three_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG - chr4_1:63661797-63661816 Msa0563330:CDS 25.0%
! TGAAAATAAACTTAACACGA+GGG + chr4_1:63661828-63661847 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG + chr4_1:63661829-63661848 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG + chr4_1:63661995-63662014 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG - chr4_1:63662239-63662258 Msa0563330:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG - chr4_1:63662825-63662844 Msa0563330:CDS 25.0%
! AGATGATAATTCATGGAAAA+CGG - chr4_1:63663246-63663265 Msa0563330:five_prime_UTR 25.0%
AAAAAACACATCACTGATCA+TGG + chr4_1:63661644-63661663 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG - chr4_1:63661643-63661662 Msa0563330:three_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG + chr4_1:63662006-63662025 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG + chr4_1:63662027-63662046 None:intergenic 30.0%
GATTGATTGTGTGTAATTTC+TGG - chr4_1:63662168-63662187 Msa0563330:CDS 30.0%
!! ATTTCTGGTTTAAAAATGCC+TGG - chr4_1:63662183-63662202 Msa0563330:CDS 30.0%
!!! TTTAAAAATGCCTGGTTTTG+TGG - chr4_1:63662191-63662210 Msa0563330:CDS 30.0%
!! AATGCTTTGAAACATCATCA+GGG + chr4_1:63662365-63662384 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG - chr4_1:63662443-63662462 Msa0563330:intron 30.0%
TGTCAAGGTTGGAATTATAT+TGG + chr4_1:63662716-63662735 None:intergenic 30.0%
AATATAATTCCAACCTTGAC+AGG - chr4_1:63662715-63662734 Msa0563330:CDS 30.0%
TAATACAAACATACCTGTCA+AGG + chr4_1:63662731-63662750 None:intergenic 30.0%
AGAAAAGAAGTTGTTCTGTA+TGG - chr4_1:63663186-63663205 Msa0563330:five_prime_UTR 30.0%
TCAATCCAGATGATAATTCA+TGG - chr4_1:63663239-63663258 Msa0563330:five_prime_UTR 30.0%
! GTTTTCCATGAATTATCATC+TGG + chr4_1:63663247-63663266 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG - chr4_1:63663304-63663323 Msa0563330:five_prime_UTR 30.0%
TACAACAAAGTCCTATATGT+AGG + chr4_1:63663361-63663380 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG - chr4_1:63663415-63663434 Msa0563330:five_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG - chr4_1:63663542-63663561 Msa0563330:five_prime_UTR 30.0%
! AAAGTTTGCATCCACAATTT+TGG - chr4_1:63663573-63663592 Msa0563330:five_prime_UTR 30.0%
AAAAAACACATCACTGATCA+TGG + chr4_1:63661644-63661663 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG - chr4_1:63661643-63661662 Msa0563330:three_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG + chr4_1:63662006-63662025 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG + chr4_1:63662027-63662046 None:intergenic 30.0%
GATTGATTGTGTGTAATTTC+TGG - chr4_1:63662168-63662187 Msa0563330:CDS 30.0%
!! ATTTCTGGTTTAAAAATGCC+TGG - chr4_1:63662183-63662202 Msa0563330:CDS 30.0%
!!! TTTAAAAATGCCTGGTTTTG+TGG - chr4_1:63662191-63662210 Msa0563330:CDS 30.0%
!! AATGCTTTGAAACATCATCA+GGG + chr4_1:63662365-63662384 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG - chr4_1:63662443-63662462 Msa0563330:intron 30.0%
TGTCAAGGTTGGAATTATAT+TGG + chr4_1:63662716-63662735 None:intergenic 30.0%
AATATAATTCCAACCTTGAC+AGG - chr4_1:63662715-63662734 Msa0563330:CDS 30.0%
TAATACAAACATACCTGTCA+AGG + chr4_1:63662731-63662750 None:intergenic 30.0%
AGAAAAGAAGTTGTTCTGTA+TGG - chr4_1:63663186-63663205 Msa0563330:five_prime_UTR 30.0%
TCAATCCAGATGATAATTCA+TGG - chr4_1:63663239-63663258 Msa0563330:five_prime_UTR 30.0%
! GTTTTCCATGAATTATCATC+TGG + chr4_1:63663247-63663266 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG - chr4_1:63663304-63663323 Msa0563330:five_prime_UTR 30.0%
TACAACAAAGTCCTATATGT+AGG + chr4_1:63663361-63663380 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG - chr4_1:63663415-63663434 Msa0563330:five_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG - chr4_1:63663542-63663561 Msa0563330:five_prime_UTR 30.0%
! AAAGTTTGCATCCACAATTT+TGG - chr4_1:63663573-63663592 Msa0563330:five_prime_UTR 30.0%
CTGATCATGGATACATCATT+GGG + chr4_1:63661631-63661650 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG + chr4_1:63661632-63661651 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG - chr4_1:63661765-63661784 Msa0563330:CDS 35.0%
GAGGTTATCTGAAAAGCTTA+TGG - chr4_1:63661784-63661803 Msa0563330:CDS 35.0%
AAGAGAGTGAAAGTTACAGT+TGG - chr4_1:63662039-63662058 Msa0563330:CDS 35.0%
CATGTTCAAATGACCTATAC+TGG - chr4_1:63662073-63662092 Msa0563330:CDS 35.0%
TGTTGAGTATCAACCAGTAT+AGG + chr4_1:63662089-63662108 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG - chr4_1:63662107-63662126 Msa0563330:CDS 35.0%
GCATTGTTTGGTTGATTGAT+TGG - chr4_1:63662119-63662138 Msa0563330:CDS 35.0%
CTTCTCTTGATTCACCATAT+TGG + chr4_1:63662256-63662275 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG - chr4_1:63662337-63662356 Msa0563330:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG + chr4_1:63662366-63662385 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG - chr4_1:63662516-63662535 Msa0563330:CDS 35.0%
TGAAGGAAAAGGAAGTCATT+GGG - chr4_1:63662533-63662552 Msa0563330:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG - chr4_1:63662641-63662660 Msa0563330:CDS 35.0%
TACCAATGCTGAAAGACATA+AGG + chr4_1:63662796-63662815 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG - chr4_1:63662850-63662869 Msa0563330:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG - chr4_1:63663133-63663152 Msa0563330:five_prime_UTR 35.0%
GTTGGATGGAGATGAAAAAT+GGG - chr4_1:63663134-63663153 Msa0563330:five_prime_UTR 35.0%
GATGAAAAATGGGTGTGTTA+TGG - chr4_1:63663144-63663163 Msa0563330:five_prime_UTR 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG - chr4_1:63663292-63663311 Msa0563330:five_prime_UTR 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG - chr4_1:63663293-63663312 Msa0563330:five_prime_UTR 35.0%
TGAAGGAAGATCCTACATAT+AGG - chr4_1:63663347-63663366 Msa0563330:five_prime_UTR 35.0%
CAAGTATGATTGTAGTGTAC+AGG - chr4_1:63663541-63663560 Msa0563330:five_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG + chr4_1:63663587-63663606 None:intergenic 35.0%
CTGATCATGGATACATCATT+GGG + chr4_1:63661631-63661650 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG + chr4_1:63661632-63661651 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG - chr4_1:63661765-63661784 Msa0563330:CDS 35.0%
GAGGTTATCTGAAAAGCTTA+TGG - chr4_1:63661784-63661803 Msa0563330:CDS 35.0%
AAGAGAGTGAAAGTTACAGT+TGG - chr4_1:63662039-63662058 Msa0563330:CDS 35.0%
CATGTTCAAATGACCTATAC+TGG - chr4_1:63662073-63662092 Msa0563330:CDS 35.0%
TGTTGAGTATCAACCAGTAT+AGG + chr4_1:63662089-63662108 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG - chr4_1:63662107-63662126 Msa0563330:CDS 35.0%
GCATTGTTTGGTTGATTGAT+TGG - chr4_1:63662119-63662138 Msa0563330:CDS 35.0%
CTTCTCTTGATTCACCATAT+TGG + chr4_1:63662256-63662275 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG - chr4_1:63662337-63662356 Msa0563330:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG + chr4_1:63662366-63662385 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG - chr4_1:63662516-63662535 Msa0563330:CDS 35.0%
TGAAGGAAAAGGAAGTCATT+GGG - chr4_1:63662533-63662552 Msa0563330:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG - chr4_1:63662641-63662660 Msa0563330:CDS 35.0%
TACCAATGCTGAAAGACATA+AGG + chr4_1:63662796-63662815 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG - chr4_1:63662850-63662869 Msa0563330:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG - chr4_1:63663133-63663152 Msa0563330:five_prime_UTR 35.0%
GTTGGATGGAGATGAAAAAT+GGG - chr4_1:63663134-63663153 Msa0563330:five_prime_UTR 35.0%
GATGAAAAATGGGTGTGTTA+TGG - chr4_1:63663144-63663163 Msa0563330:five_prime_UTR 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG - chr4_1:63663292-63663311 Msa0563330:five_prime_UTR 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG - chr4_1:63663293-63663312 Msa0563330:five_prime_UTR 35.0%
TGAAGGAAGATCCTACATAT+AGG - chr4_1:63663347-63663366 Msa0563330:five_prime_UTR 35.0%
CAAGTATGATTGTAGTGTAC+AGG - chr4_1:63663541-63663560 Msa0563330:five_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG + chr4_1:63663587-63663606 None:intergenic 35.0%
! GAGAAGCCATCTCTTTTGAA+AGG - chr4_1:63662270-63662289 Msa0563330:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG - chr4_1:63662273-63662292 Msa0563330:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG + chr4_1:63662279-63662298 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG - chr4_1:63662336-63662355 Msa0563330:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG + chr4_1:63662402-63662421 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG - chr4_1:63662401-63662420 Msa0563330:intron 40.0%
CGTTCTAACTTCCTAGCTAT+GGG - chr4_1:63662402-63662421 Msa0563330:intron 40.0%
ATTCATAACCGTGCGAAAGT+TGG - chr4_1:63662467-63662486 Msa0563330:intron 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG - chr4_1:63662522-63662541 Msa0563330:CDS 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG - chr4_1:63662532-63662551 Msa0563330:CDS 40.0%
TGGGAGGTTATGGATTCATT+TGG - chr4_1:63662552-63662571 Msa0563330:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG - chr4_1:63662624-63662643 Msa0563330:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG - chr4_1:63662686-63662705 Msa0563330:CDS 40.0%
ACAAACATACCTGTCAAGGT+TGG + chr4_1:63662727-63662746 None:intergenic 40.0%
GTCCTTATGTCTTTCAGCAT+TGG - chr4_1:63662791-63662810 Msa0563330:CDS 40.0%
TGTCAAACATGAATGTGGCT+CGG - chr4_1:63662855-63662874 Msa0563330:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG - chr4_1:63662884-63662903 Msa0563330:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG - chr4_1:63662902-63662921 Msa0563330:CDS 40.0%
GTTTATGCTGTTGGAGGATA+TGG - chr4_1:63662911-63662930 Msa0563330:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG + chr4_1:63662963-63662982 None:intergenic 40.0%
AGAAGTTGTTCTGTATGGAG+TGG - chr4_1:63663191-63663210 Msa0563330:five_prime_UTR 40.0%
GTATGGAGTGGAAGAATCAA+CGG - chr4_1:63663203-63663222 Msa0563330:five_prime_UTR 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG - chr4_1:63663330-63663349 Msa0563330:five_prime_UTR 40.0%
CTTGTGCAGTGTAACTATCA+AGG - chr4_1:63663444-63663463 Msa0563330:five_prime_UTR 40.0%
TGTAACTATCAAGGCCTGAA+AGG - chr4_1:63663453-63663472 Msa0563330:five_prime_UTR 40.0%
GTAACTATCAAGGCCTGAAA+GGG - chr4_1:63663454-63663473 Msa0563330:five_prime_UTR 40.0%
ACTGAAGACCTTGATAGAGT+TGG - chr4_1:63663491-63663510 Msa0563330:five_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG - chr4_1:63663505-63663524 Msa0563330:five_prime_UTR 40.0%
! GAGAAGCCATCTCTTTTGAA+AGG - chr4_1:63662270-63662289 Msa0563330:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG - chr4_1:63662273-63662292 Msa0563330:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG + chr4_1:63662279-63662298 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG - chr4_1:63662336-63662355 Msa0563330:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG + chr4_1:63662402-63662421 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG - chr4_1:63662401-63662420 Msa0563330:intron 40.0%
CGTTCTAACTTCCTAGCTAT+GGG - chr4_1:63662402-63662421 Msa0563330:intron 40.0%
ATTCATAACCGTGCGAAAGT+TGG - chr4_1:63662467-63662486 Msa0563330:intron 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG - chr4_1:63662522-63662541 Msa0563330:CDS 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG - chr4_1:63662532-63662551 Msa0563330:CDS 40.0%
TGGGAGGTTATGGATTCATT+TGG - chr4_1:63662552-63662571 Msa0563330:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG - chr4_1:63662624-63662643 Msa0563330:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG - chr4_1:63662686-63662705 Msa0563330:CDS 40.0%
ACAAACATACCTGTCAAGGT+TGG + chr4_1:63662727-63662746 None:intergenic 40.0%
GTCCTTATGTCTTTCAGCAT+TGG - chr4_1:63662791-63662810 Msa0563330:CDS 40.0%
TGTCAAACATGAATGTGGCT+CGG - chr4_1:63662855-63662874 Msa0563330:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG - chr4_1:63662884-63662903 Msa0563330:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG - chr4_1:63662902-63662921 Msa0563330:CDS 40.0%
GTTTATGCTGTTGGAGGATA+TGG - chr4_1:63662911-63662930 Msa0563330:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG + chr4_1:63662963-63662982 None:intergenic 40.0%
AGAAGTTGTTCTGTATGGAG+TGG - chr4_1:63663191-63663210 Msa0563330:five_prime_UTR 40.0%
GTATGGAGTGGAAGAATCAA+CGG - chr4_1:63663203-63663222 Msa0563330:five_prime_UTR 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG - chr4_1:63663330-63663349 Msa0563330:five_prime_UTR 40.0%
CTTGTGCAGTGTAACTATCA+AGG - chr4_1:63663444-63663463 Msa0563330:five_prime_UTR 40.0%
TGTAACTATCAAGGCCTGAA+AGG - chr4_1:63663453-63663472 Msa0563330:five_prime_UTR 40.0%
GTAACTATCAAGGCCTGAAA+GGG - chr4_1:63663454-63663473 Msa0563330:five_prime_UTR 40.0%
ACTGAAGACCTTGATAGAGT+TGG - chr4_1:63663491-63663510 Msa0563330:five_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG - chr4_1:63663505-63663524 Msa0563330:five_prime_UTR 40.0%
CATTTGAACATGCCAAGCCT+CGG + chr4_1:63662065-63662084 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG + chr4_1:63662204-63662223 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG - chr4_1:63662286-63662305 Msa0563330:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG - chr4_1:63662405-63662424 Msa0563330:intron 45.0%
AGGAAAAGGAAGTCATTGGG+AGG - chr4_1:63662536-63662555 Msa0563330:CDS 45.0%
AGGAAGTCATTGGGAGGTTA+TGG - chr4_1:63662542-63662561 Msa0563330:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG - chr4_1:63662645-63662664 Msa0563330:CDS 45.0%
GCTGGCTATTCATCAACTGA+TGG - chr4_1:63662663-63662682 Msa0563330:CDS 45.0%
TTGTGCAGAAGTCAATGGCT+TGG - chr4_1:63662889-63662908 Msa0563330:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG - chr4_1:63662969-63662988 Msa0563330:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG + chr4_1:63662977-63662996 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG - chr4_1:63663027-63663046 Msa0563330:exon 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG - chr4_1:63663028-63663047 Msa0563330:exon 45.0%
! ACAACCCTGAGAAGCATAGT+TGG - chr4_1:63663116-63663135 Msa0563330:five_prime_UTR 45.0%
CCATCCAACTATGCTTCTCA+GGG + chr4_1:63663123-63663142 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG + chr4_1:63663124-63663143 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG - chr4_1:63663378-63663397 Msa0563330:five_prime_UTR 45.0%
TATGATCCAAATGCAGAGCC+GGG - chr4_1:63663379-63663398 Msa0563330:five_prime_UTR 45.0%
CAGATGCAGTAAACCCTTTC+AGG + chr4_1:63663470-63663489 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG - chr4_1:63663497-63663516 Msa0563330:five_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG + chr4_1:63663502-63663521 None:intergenic 45.0%
CATTTGAACATGCCAAGCCT+CGG + chr4_1:63662065-63662084 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG + chr4_1:63662204-63662223 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG - chr4_1:63662286-63662305 Msa0563330:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG - chr4_1:63662405-63662424 Msa0563330:intron 45.0%
AGGAAAAGGAAGTCATTGGG+AGG - chr4_1:63662536-63662555 Msa0563330:CDS 45.0%
AGGAAGTCATTGGGAGGTTA+TGG - chr4_1:63662542-63662561 Msa0563330:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG - chr4_1:63662645-63662664 Msa0563330:CDS 45.0%
GCTGGCTATTCATCAACTGA+TGG - chr4_1:63662663-63662682 Msa0563330:CDS 45.0%
TTGTGCAGAAGTCAATGGCT+TGG - chr4_1:63662889-63662908 Msa0563330:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG - chr4_1:63662969-63662988 Msa0563330:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG + chr4_1:63662977-63662996 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG - chr4_1:63663027-63663046 Msa0563330:exon 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG - chr4_1:63663028-63663047 Msa0563330:exon 45.0%
! ACAACCCTGAGAAGCATAGT+TGG - chr4_1:63663116-63663135 Msa0563330:five_prime_UTR 45.0%
CCATCCAACTATGCTTCTCA+GGG + chr4_1:63663123-63663142 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG + chr4_1:63663124-63663143 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG - chr4_1:63663378-63663397 Msa0563330:five_prime_UTR 45.0%
TATGATCCAAATGCAGAGCC+GGG - chr4_1:63663379-63663398 Msa0563330:five_prime_UTR 45.0%
CAGATGCAGTAAACCCTTTC+AGG + chr4_1:63663470-63663489 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG - chr4_1:63663497-63663516 Msa0563330:five_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG + chr4_1:63663502-63663521 None:intergenic 45.0%
GTGAAAGTTACAGTTGGCCG+AGG - chr4_1:63662045-63662064 Msa0563330:CDS 50.0%
TGGTCATAGTGTGAGGTCTG+AGG - chr4_1:63662293-63662312 Msa0563330:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG + chr4_1:63662347-63662366 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG + chr4_1:63662348-63662367 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG + chr4_1:63662416-63662435 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG - chr4_1:63662421-63662440 Msa0563330:intron 50.0%
ATAACCGTGCGAAAGTTGGC+TGG - chr4_1:63662471-63662490 Msa0563330:intron 50.0%
TAACCGTGCGAAAGTTGGCT+GGG - chr4_1:63662472-63662491 Msa0563330:intron 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG + chr4_1:63662587-63662606 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+AGG - chr4_1:63662905-63662924 Msa0563330:CDS 50.0%
GTTGGAGGATATGGAGCAGA+AGG - chr4_1:63662920-63662939 Msa0563330:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG - chr4_1:63663045-63663064 Msa0563330:five_prime_UTR 50.0%
GAGGGCAAGCTCTATGTGAT+GGG - chr4_1:63663046-63663065 Msa0563330:five_prime_UTR 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG - chr4_1:63663053-63663072 Msa0563330:five_prime_UTR 50.0%
GGAAGGTCGAGCTTCACAAT+TGG - chr4_1:63663070-63663089 Msa0563330:five_prime_UTR 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG - chr4_1:63663120-63663139 Msa0563330:five_prime_UTR 50.0%
ATGATCCAAATGCAGAGCCG+GGG - chr4_1:63663380-63663399 Msa0563330:five_prime_UTR 50.0%
CTGCACAAGCACAAACCAGA+TGG + chr4_1:63663433-63663452 None:intergenic 50.0%
GTGAAAGTTACAGTTGGCCG+AGG - chr4_1:63662045-63662064 Msa0563330:CDS 50.0%
TGGTCATAGTGTGAGGTCTG+AGG - chr4_1:63662293-63662312 Msa0563330:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG + chr4_1:63662347-63662366 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG + chr4_1:63662348-63662367 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG + chr4_1:63662416-63662435 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG - chr4_1:63662421-63662440 Msa0563330:intron 50.0%
ATAACCGTGCGAAAGTTGGC+TGG - chr4_1:63662471-63662490 Msa0563330:intron 50.0%
TAACCGTGCGAAAGTTGGCT+GGG - chr4_1:63662472-63662491 Msa0563330:intron 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG + chr4_1:63662587-63662606 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+AGG - chr4_1:63662905-63662924 Msa0563330:CDS 50.0%
GTTGGAGGATATGGAGCAGA+AGG - chr4_1:63662920-63662939 Msa0563330:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG - chr4_1:63663045-63663064 Msa0563330:five_prime_UTR 50.0%
GAGGGCAAGCTCTATGTGAT+GGG - chr4_1:63663046-63663065 Msa0563330:five_prime_UTR 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG - chr4_1:63663053-63663072 Msa0563330:five_prime_UTR 50.0%
GGAAGGTCGAGCTTCACAAT+TGG - chr4_1:63663070-63663089 Msa0563330:five_prime_UTR 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG - chr4_1:63663120-63663139 Msa0563330:five_prime_UTR 50.0%
ATGATCCAAATGCAGAGCCG+GGG - chr4_1:63663380-63663399 Msa0563330:five_prime_UTR 50.0%
CTGCACAAGCACAAACCAGA+TGG + chr4_1:63663433-63663452 None:intergenic 50.0%
AGTTACAGTTGGCCGAGGCT+TGG - chr4_1:63662050-63662069 Msa0563330:CDS 55.0%
TAGAACGAGGCACGAGTGCA+AGG + chr4_1:63662389-63662408 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG - chr4_1:63662482-63662501 Msa0563330:intron 55.0%
CGATCTCTTCCACCAATGCC+TGG - chr4_1:63662585-63662604 Msa0563330:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG - chr4_1:63662592-63662611 Msa0563330:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG + chr4_1:63662597-63662616 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG - chr4_1:63662596-63662615 Msa0563330:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG - chr4_1:63662607-63662626 Msa0563330:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG - chr4_1:63662608-63662627 Msa0563330:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG - chr4_1:63662955-63662974 Msa0563330:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG - chr4_1:63663002-63663021 Msa0563330:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG - chr4_1:63663003-63663022 Msa0563330:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG - chr4_1:63663004-63663023 Msa0563330:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG + chr4_1:63663009-63663028 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG + chr4_1:63663019-63663038 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG - chr4_1:63663019-63663038 Msa0563330:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG + chr4_1:63663038-63663057 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG - chr4_1:63663049-63663068 Msa0563330:five_prime_UTR 55.0%
AACGGTACCAGTACCCCTGA+CGG - chr4_1:63663264-63663283 Msa0563330:five_prime_UTR 55.0%
AACACTCGAACTCCCCGTCA+GGG + chr4_1:63663281-63663300 None:intergenic 55.0%
AGTTACAGTTGGCCGAGGCT+TGG - chr4_1:63662050-63662069 Msa0563330:CDS 55.0%
TAGAACGAGGCACGAGTGCA+AGG + chr4_1:63662389-63662408 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG - chr4_1:63662482-63662501 Msa0563330:intron 55.0%
CGATCTCTTCCACCAATGCC+TGG - chr4_1:63662585-63662604 Msa0563330:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG - chr4_1:63662592-63662611 Msa0563330:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG + chr4_1:63662597-63662616 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG - chr4_1:63662596-63662615 Msa0563330:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG - chr4_1:63662607-63662626 Msa0563330:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG - chr4_1:63662608-63662627 Msa0563330:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG - chr4_1:63662955-63662974 Msa0563330:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG - chr4_1:63663002-63663021 Msa0563330:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG - chr4_1:63663003-63663022 Msa0563330:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG - chr4_1:63663004-63663023 Msa0563330:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG + chr4_1:63663009-63663028 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG + chr4_1:63663019-63663038 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG - chr4_1:63663019-63663038 Msa0563330:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG + chr4_1:63663038-63663057 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG - chr4_1:63663049-63663068 Msa0563330:five_prime_UTR 55.0%
AACGGTACCAGTACCCCTGA+CGG - chr4_1:63663264-63663283 Msa0563330:five_prime_UTR 55.0%
AACACTCGAACTCCCCGTCA+GGG + chr4_1:63663281-63663300 None:intergenic 55.0%
CAGCCCAGCCAACTTTCGCA+CGG + chr4_1:63662478-63662497 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG + chr4_1:63662600-63662619 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG - chr4_1:63662600-63662619 Msa0563330:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG - chr4_1:63662601-63662620 Msa0563330:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG + chr4_1:63662606-63662625 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG - chr4_1:63662606-63662625 Msa0563330:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG + chr4_1:63662612-63662631 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG - chr4_1:63662614-63662633 Msa0563330:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG + chr4_1:63662957-63662976 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG - chr4_1:63663265-63663284 Msa0563330:five_prime_UTR 60.0%
ACACTCGAACTCCCCGTCAG+GGG + chr4_1:63663280-63663299 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG + chr4_1:63663282-63663301 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG - chr4_1:63663280-63663299 Msa0563330:five_prime_UTR 60.0%
TCACACCCCGGCTCTGCATT+TGG + chr4_1:63663388-63663407 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG + chr4_1:63663400-63663419 None:intergenic 60.0%
CAGCCCAGCCAACTTTCGCA+CGG + chr4_1:63662478-63662497 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG + chr4_1:63662600-63662619 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG - chr4_1:63662600-63662619 Msa0563330:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG - chr4_1:63662601-63662620 Msa0563330:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG + chr4_1:63662606-63662625 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG - chr4_1:63662606-63662625 Msa0563330:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG + chr4_1:63662612-63662631 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG - chr4_1:63662614-63662633 Msa0563330:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG + chr4_1:63662957-63662976 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG - chr4_1:63663265-63663284 Msa0563330:five_prime_UTR 60.0%
ACACTCGAACTCCCCGTCAG+GGG + chr4_1:63663280-63663299 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG + chr4_1:63663282-63663301 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG - chr4_1:63663280-63663299 Msa0563330:five_prime_UTR 60.0%
TCACACCCCGGCTCTGCATT+TGG + chr4_1:63663388-63663407 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG + chr4_1:63663400-63663419 None:intergenic 60.0%
TGGCTGGGCTGCTTGAGGAG+TGG - chr4_1:63662487-63662506 Msa0563330:intron 65.0%
TGACAGTCTCTCCAGCGCCG+AGG - chr4_1:63662943-63662962 Msa0563330:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG - chr4_1:63663266-63663285 Msa0563330:five_prime_UTR 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG + chr4_1:63663274-63663293 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG - chr4_1:63663389-63663408 Msa0563330:five_prime_UTR 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG - chr4_1:63663390-63663409 Msa0563330:five_prime_UTR 65.0%
TGGCTGGGCTGCTTGAGGAG+TGG - chr4_1:63662487-63662506 Msa0563330:intron 65.0%
TGACAGTCTCTCCAGCGCCG+AGG - chr4_1:63662943-63662962 Msa0563330:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG - chr4_1:63663266-63663285 Msa0563330:five_prime_UTR 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG + chr4_1:63663274-63663293 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG - chr4_1:63663389-63663408 Msa0563330:five_prime_UTR 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG - chr4_1:63663390-63663409 Msa0563330:five_prime_UTR 65.0%
GCAGAGCCGGGGTGTGAGTG+GGG - chr4_1:63663391-63663410 Msa0563330:five_prime_UTR 70.0%
GCAGAGCCGGGGTGTGAGTG+GGG - chr4_1:63663391-63663410 Msa0563330:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63661596 63663640 63661596 ID=Msa0563330;Name=Msa0563330
chr4_1 mRNA 63661596 63663640 63661596 ID=Msa0563330-mRNA-1;Parent=Msa0563330;Name=Msa0563330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=602|1|1|1|1|1|2|169|388
chr4_1 exon 63661596 63662392 63661596 ID=Msa0563330-mRNA-1:exon:20274;Parent=Msa0563330-mRNA-1
chr4_1 exon 63662500 63663640 63662500 ID=Msa0563330-mRNA-1:exon:20273;Parent=Msa0563330-mRNA-1
chr4_1 five_prime_UTR 63663039 63663640 63663039 ID=Msa0563330-mRNA-1:five_prime_utr;Parent=Msa0563330-mRNA-1
chr4_1 CDS 63662500 63663038 63662500 ID=Msa0563330-mRNA-1:cds;Parent=Msa0563330-mRNA-1
chr4_1 CDS 63661765 63662392 63661765 ID=Msa0563330-mRNA-1:cds;Parent=Msa0563330-mRNA-1
chr4_1 three_prime_UTR 63661596 63661764 63661596 ID=Msa0563330-mRNA-1:three_prime_utr;Parent=Msa0563330-mRNA-1
Gene Sequence

>Msa0563330

ATGCCTGGTTTTGTGGCTGTCAAGAAGAGATTTTCAGAGAAAAATGTGTGTTTTTCCAATATGGTGAATCAAGAGAAGCCATCTCTTTTGAAAGGTGGTCATAGTGTGAGGTCTGAGGCTGTAGATGATGTTATTGATGATGATAGCCCTATTCTTTCTGGGCTCCCTGATGATGTTTCAAAGCATTGCCTTGCACTCGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGTGTTTGTAAGAGATGGAAATGCTTTATTCAAAGCAAGGAATTCATAACCGTGCGAAAGTTGGCTGGGCTGCTTGAGGAGTGGCTTTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCATTTGGTCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAAGGAAGGCTGGGTTTGGGGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAACTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCCAACCTTGACAGTTGGATCAGATTGTCAAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGATATGGAGCAGAAGGTGACAGTCTCTCCAGCGCCGAGGTTTATGATCCGGATACTGACAAGTGGACAGTGATTGAGAGCCTACGTCGTCCAAGATGGGGATGCTTTGCCTGTGGATTAGAGGGCAAGCTCTATGTGATGGGTGGAAGGTCGAGCTTCACAATTGGAAATTCTAAGTTTGTTGATGTTTACAACCCTGAGAAGCATAGTTGGATGGAGATGAAAAATGGGTGTGTTATGGTAACTGCTCATGCAGTACTAGAAAAGAAGTTGTTCTGTATGGAGTGGAAGAATCAACGGAAGCTATCGATATTCAATCCAGATGATAATTCATGGAAAACGGTACCAGTACCCCTGACGGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCACTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGAGCCGGGGTGTGAGTGGGGAACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA
Protein sequence

>Msa0563330

MPGFVAVKKRFSEKNVCFSNMVNQEKPSLLKGGHSVRSEAVDDVIDDDSPILSGLPDDVSKHCLALVPRSNFLAMGGVCKRWKCFIQSKEFITVRKLAGLLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPRKAGFGVVVLNGKLLVMAGYSSTDGTVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTVIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKFVDVYNPEKHSWMEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDNSWKTVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAEPGCEWGTTDIKPSGLCLCSVTIKA*