AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700320 MtrunA17_Chr8g0377241 97.423 388 10 0 1 388 1 388 0.0 784
Msa0700320 MtrunA17_Chr3g0122681 76.267 375 84 2 16 388 1 372 0.0 594
Msa0700320 MtrunA17_Chr4g0063531 30.631 333 210 11 26 346 41 364 3.55e-35 134
Msa0700320 MtrunA17_Chr8g0378511 30.325 277 179 7 50 320 76 344 2.10e-31 124
Msa0700320 MtrunA17_Chr8g0348991 29.900 301 184 11 36 322 9 296 1.72e-29 117
Msa0700320 MtrunA17_Chr2g0285851 30.124 322 195 11 16 325 31 334 1.18e-27 112
Msa0700320 MtrunA17_Chr4g0060541 23.404 329 223 7 37 346 17 335 1.20e-22 98.2
Msa0700320 MtrunA17_Chr7g0260051 30.876 217 135 5 49 254 2 214 3.15e-22 96.7
Msa0700320 MtrunA17_Chr2g0326541 25.556 360 237 10 37 379 3 348 3.43e-22 96.7
Msa0700320 MtrunA17_Chr2g0278921 24.383 324 203 8 29 323 21 331 1.23e-21 96.3
Msa0700320 MtrunA17_Chr4g0011151 24.847 326 208 8 43 346 93 403 5.15e-21 94.4
Msa0700320 MtrunA17_Chr4g0011221 24.847 326 208 8 43 346 93 403 1.27e-20 93.2
Msa0700320 MtrunA17_Chr4g0010131 24.451 364 237 10 43 386 63 408 1.67e-20 92.4
Msa0700320 MtrunA17_Chr4g0011171 24.540 326 209 8 43 346 93 403 2.27e-20 92.4
Msa0700320 MtrunA17_Chr4g0011161 24.159 327 209 8 43 346 93 403 3.06e-20 92.0
Msa0700320 MtrunA17_Chr4g0011191 27.778 234 144 6 43 265 93 312 5.35e-19 87.0
Msa0700320 MtrunA17_Chr4g0010161 22.741 321 221 7 42 346 59 368 9.09e-19 87.4
Msa0700320 MtrunA17_Chr5g0416461 26.033 242 160 5 47 283 125 352 2.74e-16 80.1
Msa0700320 MtrunA17_Chr8g0362081 26.923 234 146 6 58 283 157 373 4.02e-16 79.7
Msa0700320 MtrunA17_Chr6g0459491 23.913 322 202 12 52 346 57 362 2.31e-14 73.9
Msa0700320 MtrunA17_Chr2g0281551 37.113 97 59 1 162 256 102 198 2.33e-14 73.9
Msa0700320 MtrunA17_Chr3g0129221 26.389 216 148 5 46 257 4 212 5.51e-13 69.7
Msa0700320 MtrunA17_Chr8g0378571 22.979 235 163 3 45 263 1 233 7.88e-13 68.9
Msa0700320 MtrunA17_Chr7g0243481 29.310 174 116 5 130 301 97 265 2.32e-12 67.8
Msa0700320 MtrunA17_Chr7g0243481 30.872 149 94 5 131 278 147 287 3.19e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700320 AT1G67480.3 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0700320 AT1G67480.1 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0700320 AT1G67480.2 59.580 381 141 2 8 388 9 376 1.21e-165 469
Msa0700320 AT1G27420.1 40.678 354 187 8 44 386 3 344 2.69e-86 266
Msa0700320 AT1G55270.1 31.541 279 171 9 50 319 77 344 3.40e-34 132
Msa0700320 AT1G30090.1 28.421 285 191 7 50 325 52 332 1.02e-24 104
Msa0700320 AT5G60570.2 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0700320 AT5G60570.1 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0700320 AT5G60570.3 25.826 333 213 9 33 352 38 349 2.34e-24 103
Msa0700320 AT2G24540.1 25.000 312 213 7 21 322 1 301 2.05e-23 100
Msa0700320 AT3G61350.2 27.076 277 182 9 51 319 21 285 2.78e-23 100
Msa0700320 AT3G61350.1 27.076 277 182 9 51 319 21 285 2.78e-23 100
Msa0700320 AT1G16250.2 26.230 244 164 6 51 283 8 246 2.52e-22 97.8
Msa0700320 AT1G16250.1 26.230 244 164 6 51 283 8 246 2.52e-22 97.8
Msa0700320 AT1G55270.2 29.075 227 141 9 102 319 3 218 9.41e-20 89.4
Msa0700320 AT3G63220.1 30.876 217 135 5 49 254 2 214 2.36e-19 89.0
Msa0700320 AT3G63220.3 30.876 217 135 5 49 254 9 221 2.47e-19 89.0
Msa0700320 AT3G63220.2 30.876 217 135 5 49 254 9 221 2.47e-19 89.0
Msa0700320 AT3G27150.2 25.610 328 203 11 64 366 83 394 8.99e-19 87.8
Msa0700320 AT3G27150.1 25.610 328 203 11 64 366 83 394 8.99e-19 87.8
Msa0700320 AT1G22040.1 25.916 382 193 14 51 354 43 412 1.47e-18 87.4
Msa0700320 AT2G21950.1 26.780 295 185 11 42 320 9 288 7.23e-18 84.7
Msa0700320 AT1G26930.1 28.251 223 144 4 38 256 57 267 1.01e-17 84.7
Msa0700320 AT1G74510.2 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0700320 AT1G74510.1 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0700320 AT1G74510.3 27.632 228 144 5 62 283 106 318 2.19e-17 84.0
Msa0700320 AT1G26930.2 28.986 207 129 5 38 239 57 250 7.65e-17 81.6
Msa0700320 AT5G26960.1 27.675 271 157 10 47 293 39 294 2.14e-16 80.9
Msa0700320 AT5G01660.2 28.990 307 171 16 56 335 362 648 2.16e-16 81.3
Msa0700320 AT5G01660.1 28.990 307 171 16 56 335 362 648 2.16e-16 81.3
Msa0700320 AT2G44130.1 24.907 269 164 6 51 283 19 285 2.94e-16 80.1
Msa0700320 AT4G03030.1 30.317 221 129 7 45 242 32 250 4.70e-16 79.7
Msa0700320 AT1G80440.1 27.160 243 160 6 51 278 3 243 1.21e-15 78.2
Msa0700320 AT1G14330.1 23.529 221 159 3 37 256 80 291 3.30e-14 74.3
Msa0700320 AT2G02870.2 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0700320 AT2G02870.3 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0700320 AT2G02870.1 23.651 241 168 4 47 283 113 341 4.33e-14 73.9
Msa0700320 AT3G46050.1 28.022 182 120 5 52 229 18 192 2.74e-13 70.9
Msa0700320 AT5G40680.1 22.951 305 195 12 53 334 64 351 3.37e-13 70.9
Msa0700320 AT1G15670.1 25.911 247 162 7 51 278 3 247 3.03e-11 64.7

Find 146 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATAGCCCTATTCTTTC+TGG 0.085042 4_4:-71268708 Msa0700320:CDS
AAACTTTGCGTCCACAATTT+TGG 0.182315 4_4:-71267471 Msa0700320:three_prime_UTR
GATTGATTGTGTGTAATTTC+TGG 0.201268 4_4:-71268876 Msa0700320:five_prime_UTR
GGTCCAAGGAAGGCTGGGTT+TGG 0.218814 4_4:-71268438 Msa0700320:CDS
CAGATGCAGTAAACCCTTTC+AGG 0.220682 4_4:+71267577 None:intergenic
GTTTATGCTGTTGGAGGATA+TGG 0.248326 4_4:-71268133 Msa0700320:CDS
GGCTGAATAAATCAACTAAT+TGG 0.251357 4_4:+71269041 None:intergenic
AGGAAGTCATTGGGAGGTTA+TGG 0.260241 4_4:-71268502 Msa0700320:CDS
GTCCAAGGAAGGCTGGGTTT+GGG 0.265699 4_4:-71268437 Msa0700320:CDS
CTTCTCTTGATTCACCATAT+TGG 0.268458 4_4:+71268791 None:intergenic
GAAGGCTGGGTTTGGGGTTG+TGG 0.291666 4_4:-71268430 Msa0700320:CDS
TCACACCCCGGCTCTGCATT+TGG 0.312589 4_4:+71267659 None:intergenic
TAACGGAAAGCTTCTTGTTA+TGG 0.323843 4_4:-71268403 Msa0700320:CDS
TGTCGAGGTTGGAATTATAT+TGG 0.350026 4_4:+71268331 None:intergenic
AGCACATAAATATATTCAAT+TGG 0.351012 4_4:+71269329 None:intergenic
GAGGTTATCTGAAAAGCTTA+TGG 0.353926 4_4:-71269260 Msa0700320:five_prime_UTR
GCATTGTTTGGTTGATTGAT+TGG 0.363200 4_4:-71268925 Msa0700320:five_prime_UTR
TCCATCCAACTATGCTTCTC+AGG 0.366765 4_4:+71267923 None:intergenic
ATGCTTTGCCTGTGGATTAG+AGG 0.368919 4_4:-71268017 Msa0700320:CDS
GAATATATTTATGTGCTGTT+TGG 0.377607 4_4:-71269323 Msa0700320:five_prime_UTR
TAAGTATGATTGTAGTGTAC+AGG 0.382030 4_4:-71267503 Msa0700320:three_prime_UTR
ATGATAGCCCTATTCTTTCT+GGG 0.386607 4_4:-71268707 Msa0700320:CDS
TGGGAGGTTATGGATTCATT+TGG 0.394308 4_4:-71268492 Msa0700320:CDS
GTGAAGGAAAAGGAAGTCAT+TGG 0.394801 4_4:-71268512 Msa0700320:CDS
TCAATCCAGATGATAATTCA+TGG 0.397099 4_4:-71267805 Msa0700320:CDS
ACCCCAAACCCAGCCTTCCT+TGG 0.402488 4_4:+71268435 None:intergenic
ACTGATCATGGATACATCAT+TGG 0.404162 4_4:+71269415 None:intergenic
GCCTTCCTTGGACCAGGCAT+TGG 0.406760 4_4:+71268447 None:intergenic
AGAAAAGAAATTGTTCTGTA+TGG 0.411683 4_4:-71267858 Msa0700320:CDS
TCGTTCTAACTTCCTAGCTA+TGG 0.419133 4_4:-71268643 Msa0700320:CDS
TTTGGGGTTGTGGTTCTTAA+CGG 0.421717 4_4:-71268420 Msa0700320:CDS
AAGCTTATGGAAATAGATTA+CGG 0.426994 4_4:-71269247 Msa0700320:five_prime_UTR
TTTAGATTTGGGATACTGAA+TGG 0.434123 4_4:-71267740 Msa0700320:CDS
AATGGCTTGGTTTATGCTGT+TGG 0.435481 4_4:-71268142 Msa0700320:CDS
ACTCTCTTCAAGTTTCATAT+CGG 0.436144 4_4:+71269020 None:intergenic
CAACACTCGAACTCCCCGTC+AGG 0.438512 4_4:+71267765 None:intergenic
ATGCCTGGTCCAAGGAAGGC+TGG 0.443856 4_4:-71268444 Msa0700320:CDS
CAATGCTTTGAAACATCATC+AGG 0.446862 4_4:+71268681 None:intergenic
GAACTCCCCGTCAGGGGTAC+TGG 0.449360 4_4:+71267773 None:intergenic
TCCAAGGAAGGCTGGGTTTG+GGG 0.450800 4_4:-71268436 Msa0700320:CDS
CAGGCAAAGCATCCCCATCT+TGG 0.451057 4_4:+71268028 None:intergenic
CAGGGAGCCCAGAAAGAATA+GGG 0.456054 4_4:+71268700 None:intergenic
TCAGGGAGCCCAGAAAGAAT+AGG 0.456310 4_4:+71268699 None:intergenic
TTCCTTGGACCAGGCATTGG+TGG 0.456385 4_4:+71268450 None:intergenic
CATGTTCAAATGACCTATAC+TGG 0.462281 4_4:-71268971 Msa0700320:five_prime_UTR
CGATCTCTTCCACCAATGCC+TGG 0.465067 4_4:-71268459 Msa0700320:CDS
ATAAACATTTATCATATAAG+TGG 0.467994 4_4:+71269127 None:intergenic
TTTGCTTGTGCAGAAGTCAA+TGG 0.468117 4_4:-71268160 Msa0700320:CDS
GCACATAAATATATTCAATT+GGG 0.474265 4_4:+71269330 None:intergenic
ACTGTCCACTTGTCAGTATC+CGG 0.476238 4_4:+71268070 None:intergenic
ATAACCGTGCGAAAGTTGGC+TGG 0.478182 4_4:-71268573 Msa0700320:CDS
TGCAGAGCCGGGGTGTGAGT+GGG 0.483079 4_4:-71267654 Msa0700320:CDS
CGGATCATAAACCTCGGCGC+TGG 0.483389 4_4:+71268090 None:intergenic
ATGCAGAGCCGGGGTGTGAG+TGG 0.485645 4_4:-71267655 Msa0700320:CDS
TAGAGTTGGCAATGGAGTTA+CGG 0.487288 4_4:-71267539 Msa0700320:three_prime_UTR
GGAAGGTCGAGCTTCACAAT+TGG 0.490581 4_4:-71267974 Msa0700320:CDS
AGTTACAGTTGGCCGAGGCT+TGG 0.491656 4_4:-71268994 Msa0700320:five_prime_UTR
AGATGATAATTCATGGAAAA+CGG 0.492908 4_4:-71267798 Msa0700320:CDS
CGTTCTAACTTCCTAGCTAT+GGG 0.493297 4_4:-71268642 Msa0700320:CDS
GGAAAGCTTCTTGTTATGGC+TGG 0.494684 4_4:-71268399 Msa0700320:CDS
CTGATCATGGATACATCATT+GGG 0.499398 4_4:+71269416 None:intergenic
TGAAGGAAGATCCTACATAT+AGG 0.500461 4_4:-71267697 Msa0700320:CDS
ACTACTGATATAAAACCATC+TGG 0.501116 4_4:-71267629 Msa0700320:CDS
ACAACCCTGAGAAGCATAGT+TGG 0.505267 4_4:-71267928 Msa0700320:CDS
AACCCAGCCTTCCTTGGACC+AGG 0.506388 4_4:+71268441 None:intergenic
GTATGATCCAAATGCAGAGC+CGG 0.507910 4_4:-71267666 Msa0700320:CDS
GTTATATATTTCTATAACAA+AGG 0.508050 4_4:+71269149 None:intergenic
ACAGCTGATAGTGAAGGAAA+AGG 0.509911 4_4:-71268522 Msa0700320:CDS
AATATAATTCCAACCTCGAC+AGG 0.511389 4_4:-71268329 Msa0700320:intron
AGAAATTGTTCTGTATGGAA+TGG 0.513266 4_4:-71267853 Msa0700320:CDS
ATTCATAACCGTGCGAAAGT+TGG 0.517003 4_4:-71268577 Msa0700320:CDS
CTCCATTGCCAACTCTATCA+AGG 0.517201 4_4:+71267545 None:intergenic
GGCTTGGTTTATGCTGTTGG+AGG 0.520648 4_4:-71268139 Msa0700320:CDS
TATGATCCAAATGCAGAGCC+GGG 0.520838 4_4:-71267665 Msa0700320:CDS
TGCTTTGCCTGTGGATTAGA+GGG 0.520938 4_4:-71268016 Msa0700320:CDS
TGAAGGAAAAGGAAGTCATT+GGG 0.524940 4_4:-71268511 Msa0700320:CDS
TGGCTGGGCTGCTTGAGGAG+TGG 0.526642 4_4:-71268557 Msa0700320:CDS
TTCTTGACAGCCACAAAACC+AGG 0.528566 4_4:+71268843 None:intergenic
GAGCCTACGTCGTCCAAGAT+GGG 0.534088 4_4:-71268041 Msa0700320:CDS
TGCCTGGTCCAAGGAAGGCT+GGG 0.535078 4_4:-71268443 Msa0700320:CDS
AGAGCCTACGTCGTCCAAGA+TGG 0.538278 4_4:-71268042 Msa0700320:CDS
ACGGTACCAGTACCCCTGAC+GGG 0.539002 4_4:-71267779 Msa0700320:CDS
GTAACTATCAAGGCCTGAAA+GGG 0.541292 4_4:-71267590 Msa0700320:exon
TAATGTTGCAGCCAAAATTG+TGG 0.541418 4_4:+71267460 None:intergenic
AGAGGGCAAGCTCTATGTGA+TGG 0.545728 4_4:-71267999 Msa0700320:CDS
AACTGTTTCTGTTTCAGCAG+AGG 0.545805 4_4:-71268358 Msa0700320:CDS
TGGGCGGTGTTTGTAAGAGA+TGG 0.546805 4_4:-71268623 Msa0700320:CDS
CAGCGCCGAGGTTTATGATC+CGG 0.546819 4_4:-71268089 Msa0700320:CDS
GAAATGCTTTATTCAAAGCA+AGG 0.547489 4_4:-71268601 Msa0700320:CDS
GCTGGCTATTCATCAACTGA+TGG 0.551443 4_4:-71268381 Msa0700320:CDS
CAGGCATTGGTGGAAGAGAT+CGG 0.553729 4_4:+71268460 None:intergenic
GCAGAGCCGGGGTGTGAGTG+GGG 0.555640 4_4:-71267653 Msa0700320:CDS
AGCTCTATGTGATGGGTGGA+AGG 0.558333 4_4:-71267991 Msa0700320:CDS
AAGTATGATTGTAGTGTACA+GGG 0.559660 4_4:-71267502 Msa0700320:three_prime_UTR
TACAAACACCGCCCATAGCT+AGG 0.562469 4_4:+71268631 None:intergenic
GTGAAAGTTACAGTTGGCCG+AGG 0.564811 4_4:-71268999 Msa0700320:five_prime_UTR
TAGAACGAGGCACGAGTGCA+AGG 0.565540 4_4:+71268658 None:intergenic
CTTGTGCAGTGTAACTATCA+AGG 0.565566 4_4:-71267600 Msa0700320:CDS
TTCCACCAATGCCTGGTCCA+AGG 0.568289 4_4:-71268452 Msa0700320:CDS
ACCAATGCCTGGTCCAAGGA+AGG 0.569574 4_4:-71268448 Msa0700320:CDS
CTGACGGGGAGTTCGAGTGT+TGG 0.569934 4_4:-71267764 Msa0700320:CDS
AACGGTACCAGTACCCCTGA+CGG 0.571696 4_4:-71267780 Msa0700320:CDS
TGACCACCTTTCAAAAGAGA+TGG 0.572189 4_4:+71268768 None:intergenic
CATTTGAACATGCCAAGCCT+CGG 0.574937 4_4:+71268982 None:intergenic
TGTAACTATCAAGGCCTGAA+AGG 0.575632 4_4:-71267591 Msa0700320:exon
ACAAACATACCTGTCGAGGT+TGG 0.576689 4_4:+71268320 None:intergenic
ACTGAAGACCTTGATAGAGT+TGG 0.578250 4_4:-71267553 Msa0700320:three_prime_UTR
AACACTCGAACTCCCCGTCA+GGG 0.578430 4_4:+71267766 None:intergenic
GAGCTTGCCCTCTAATCCAC+AGG 0.578491 4_4:+71268009 None:intergenic
TACAACAAAGTCCTATATGT+AGG 0.579564 4_4:+71267686 None:intergenic
TTGTGCAGAAGTCAATGGCT+TGG 0.583821 4_4:-71268155 Msa0700320:CDS
CCCTGAGAAGCATAGTTGGA+TGG 0.584644 4_4:-71267924 Msa0700320:CDS
GTATGGAATGGAAGAATCAA+CGG 0.586972 4_4:-71267841 Msa0700320:CDS
GAGGGCAAGCTCTATGTGAT+GGG 0.587604 4_4:-71267998 Msa0700320:CDS
TGTTGAGTATCAACCAGTAT+AGG 0.588393 4_4:+71268958 None:intergenic
TAACCGTGCGAAAGTTGGCT+GGG 0.589238 4_4:-71268572 Msa0700320:CDS
GACCTTGATAGAGTTGGCAA+TGG 0.591899 4_4:-71267547 Msa0700320:three_prime_UTR
CCATCCAACTATGCTTCTCA+GGG 0.596718 4_4:+71267924 None:intergenic
AAAGTTGGCTGGGCTGCTTG+AGG 0.599240 4_4:-71268562 Msa0700320:CDS
AGATGGGGATGCTTTGCCTG+TGG 0.599321 4_4:-71268025 Msa0700320:CDS
ATCTTAACAGCTGATAGTGA+AGG 0.613279 4_4:-71268528 Msa0700320:CDS
GGCAAGCTCTATGTGATGGG+TGG 0.613940 4_4:-71267995 Msa0700320:CDS
AAGAGAGTGAAAGTTACAGT+TGG 0.615991 4_4:-71269005 Msa0700320:five_prime_UTR
TGAAAGGTGGTCATAGTGTG+AGG 0.621543 4_4:-71268758 Msa0700320:CDS
CAGATTGTCAAACATGAATG+TGG 0.623397 4_4:-71268194 Msa0700320:CDS
CAGCCCAGCCAACTTTCGCA+CGG 0.624024 4_4:+71268569 None:intergenic
AGCCTACGTCGTCCAAGATG+GGG 0.626968 4_4:-71268040 Msa0700320:CDS
CGGTACCAGTACCCCTGACG+GGG 0.627409 4_4:-71267778 Msa0700320:CDS
TAATACAAACATACCTGTCG+AGG 0.630233 4_4:+71268316 None:intergenic
CTGCACAAGCACAAACCAGA+TGG 0.631169 4_4:+71267614 None:intergenic
TGTCAAACATGAATGTGGCT+CGG 0.636616 4_4:-71268189 Msa0700320:CDS
TGAAAATAAACTTAACACGA+GGG 0.643434 4_4:+71269219 None:intergenic
GTTGGAGGATATGGAGCAGA+AGG 0.645724 4_4:-71268124 Msa0700320:CDS
ACACTCGAACTCCCCGTCAG+GGG 0.650821 4_4:+71267767 None:intergenic
ATGATCCGGATACTGACAAG+TGG 0.668925 4_4:-71268075 Msa0700320:CDS
TGGTCATAGTGTGAGGTCTG+AGG 0.676031 4_4:-71268751 Msa0700320:CDS
GTAGTTCCCCACTCACACCC+CGG 0.676823 4_4:+71267647 None:intergenic
ATGAAAATAAACTTAACACG+AGG 0.678200 4_4:+71269218 None:intergenic
AATGCTTTGAAACATCATCA+GGG 0.680105 4_4:+71268682 None:intergenic
TCTAACTTCCTAGCTATGGG+CGG 0.680814 4_4:-71268639 Msa0700320:CDS
TGACAGTCTCTCCAGCGCCG+AGG 0.686649 4_4:-71268101 Msa0700320:CDS
AGGAAAAGGAAGTCATTGGG+AGG 0.693227 4_4:-71268508 Msa0700320:CDS
ATGATCCAAATGCAGAGCCG+GGG 0.695271 4_4:-71267664 Msa0700320:CDS
AGTATCCGGATCATAAACCT+CGG 0.700429 4_4:+71268084 None:intergenic
ATCCCCATCTTGGACGACGT+AGG 0.772673 4_4:+71268038 None:intergenic
ATAGCTAGGAAGTTAGAACG+AGG 0.777780 4_4:+71268645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCATAAGTTCTTTT+TGG - chr4_4:71267637-71267656 Msa0700320:CDS 15.0%
!!! GTTATATATTTCTATAACAA+AGG + chr4_4:71267696-71267715 None:intergenic 15.0%
!! ATAAACATTTATCATATAAG+TGG + chr4_4:71267718-71267737 None:intergenic 15.0%
!!! TTATTTTCATAAGTTCTTTT+TGG - chr4_4:71267637-71267656 Msa0700320:CDS 15.0%
!!! GTTATATATTTCTATAACAA+AGG + chr4_4:71267696-71267715 None:intergenic 15.0%
!! ATAAACATTTATCATATAAG+TGG + chr4_4:71267718-71267737 None:intergenic 15.0%
!! TTAAAAATAAATGAATCTGC+AGG + chr4_4:71267478-71267497 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG + chr4_4:71267515-71267534 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG + chr4_4:71267516-71267535 None:intergenic 20.0%
!! TTAAAAATAAATGAATCTGC+AGG + chr4_4:71267478-71267497 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG + chr4_4:71267515-71267534 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG + chr4_4:71267516-71267535 None:intergenic 20.0%
!! GAATATATTTATGTGCTGTT+TGG - chr4_4:71267519-71267538 Msa0700320:three_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG - chr4_4:71267595-71267614 Msa0700320:CDS 25.0%
! TGAAAATAAACTTAACACGA+GGG + chr4_4:71267626-71267645 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG + chr4_4:71267627-71267646 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG + chr4_4:71267793-71267812 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG - chr4_4:71268037-71268056 Msa0700320:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG - chr4_4:71268623-71268642 Msa0700320:CDS 25.0%
! AGAAAAGAAATTGTTCTGTA+TGG - chr4_4:71268984-71269003 Msa0700320:five_prime_UTR 25.0%
! AGATGATAATTCATGGAAAA+CGG - chr4_4:71269044-71269063 Msa0700320:five_prime_UTR 25.0%
!! GAATATATTTATGTGCTGTT+TGG - chr4_4:71267519-71267538 Msa0700320:three_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG - chr4_4:71267595-71267614 Msa0700320:CDS 25.0%
! TGAAAATAAACTTAACACGA+GGG + chr4_4:71267626-71267645 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG + chr4_4:71267627-71267646 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG + chr4_4:71267793-71267812 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG - chr4_4:71268037-71268056 Msa0700320:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG - chr4_4:71268623-71268642 Msa0700320:CDS 25.0%
! AGAAAAGAAATTGTTCTGTA+TGG - chr4_4:71268984-71269003 Msa0700320:five_prime_UTR 25.0%
! AGATGATAATTCATGGAAAA+CGG - chr4_4:71269044-71269063 Msa0700320:five_prime_UTR 25.0%
AAAAAACACATCACTGATCA+TGG + chr4_4:71267442-71267461 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG - chr4_4:71267441-71267460 Msa0700320:three_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG + chr4_4:71267804-71267823 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG + chr4_4:71267825-71267844 None:intergenic 30.0%
GATTGATTGTGTGTAATTTC+TGG - chr4_4:71267966-71267985 Msa0700320:CDS 30.0%
!! ATTTCTGGTTTAAAAATGCC+TGG - chr4_4:71267981-71268000 Msa0700320:CDS 30.0%
!!! TTTAAAAATGCCTGGTTTTG+TGG - chr4_4:71267989-71268008 Msa0700320:CDS 30.0%
!! AATGCTTTGAAACATCATCA+GGG + chr4_4:71268163-71268182 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG - chr4_4:71268241-71268260 Msa0700320:intron 30.0%
AGAAATTGTTCTGTATGGAA+TGG - chr4_4:71268989-71269008 Msa0700320:five_prime_UTR 30.0%
TCAATCCAGATGATAATTCA+TGG - chr4_4:71269037-71269056 Msa0700320:five_prime_UTR 30.0%
! GTTTTCCATGAATTATCATC+TGG + chr4_4:71269045-71269064 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG - chr4_4:71269102-71269121 Msa0700320:five_prime_UTR 30.0%
TACAACAAAGTCCTATATGT+AGG + chr4_4:71269159-71269178 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG - chr4_4:71269213-71269232 Msa0700320:five_prime_UTR 30.0%
TAAGTATGATTGTAGTGTAC+AGG - chr4_4:71269339-71269358 Msa0700320:five_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG - chr4_4:71269340-71269359 Msa0700320:five_prime_UTR 30.0%
AAAAAACACATCACTGATCA+TGG + chr4_4:71267442-71267461 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG - chr4_4:71267441-71267460 Msa0700320:three_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG + chr4_4:71267804-71267823 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG + chr4_4:71267825-71267844 None:intergenic 30.0%
GATTGATTGTGTGTAATTTC+TGG - chr4_4:71267966-71267985 Msa0700320:CDS 30.0%
!! ATTTCTGGTTTAAAAATGCC+TGG - chr4_4:71267981-71268000 Msa0700320:CDS 30.0%
!!! TTTAAAAATGCCTGGTTTTG+TGG - chr4_4:71267989-71268008 Msa0700320:CDS 30.0%
!! AATGCTTTGAAACATCATCA+GGG + chr4_4:71268163-71268182 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG - chr4_4:71268241-71268260 Msa0700320:intron 30.0%
AGAAATTGTTCTGTATGGAA+TGG - chr4_4:71268989-71269008 Msa0700320:five_prime_UTR 30.0%
TCAATCCAGATGATAATTCA+TGG - chr4_4:71269037-71269056 Msa0700320:five_prime_UTR 30.0%
! GTTTTCCATGAATTATCATC+TGG + chr4_4:71269045-71269064 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG - chr4_4:71269102-71269121 Msa0700320:five_prime_UTR 30.0%
TACAACAAAGTCCTATATGT+AGG + chr4_4:71269159-71269178 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG - chr4_4:71269213-71269232 Msa0700320:five_prime_UTR 30.0%
TAAGTATGATTGTAGTGTAC+AGG - chr4_4:71269339-71269358 Msa0700320:five_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG - chr4_4:71269340-71269359 Msa0700320:five_prime_UTR 30.0%
CTGATCATGGATACATCATT+GGG + chr4_4:71267429-71267448 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG + chr4_4:71267430-71267449 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG - chr4_4:71267563-71267582 Msa0700320:three_prime_UTR 35.0%
GAGGTTATCTGAAAAGCTTA+TGG - chr4_4:71267582-71267601 Msa0700320:exon 35.0%
AAGAGAGTGAAAGTTACAGT+TGG - chr4_4:71267837-71267856 Msa0700320:CDS 35.0%
CATGTTCAAATGACCTATAC+TGG - chr4_4:71267871-71267890 Msa0700320:CDS 35.0%
TGTTGAGTATCAACCAGTAT+AGG + chr4_4:71267887-71267906 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG - chr4_4:71267905-71267924 Msa0700320:CDS 35.0%
GCATTGTTTGGTTGATTGAT+TGG - chr4_4:71267917-71267936 Msa0700320:CDS 35.0%
CTTCTCTTGATTCACCATAT+TGG + chr4_4:71268054-71268073 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG - chr4_4:71268135-71268154 Msa0700320:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG + chr4_4:71268164-71268183 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG - chr4_4:71268314-71268333 Msa0700320:intron 35.0%
TGAAGGAAAAGGAAGTCATT+GGG - chr4_4:71268331-71268350 Msa0700320:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG - chr4_4:71268439-71268458 Msa0700320:CDS 35.0%
TGTCGAGGTTGGAATTATAT+TGG + chr4_4:71268514-71268533 None:intergenic 35.0%
AATATAATTCCAACCTCGAC+AGG - chr4_4:71268513-71268532 Msa0700320:CDS 35.0%
TAATACAAACATACCTGTCG+AGG + chr4_4:71268529-71268548 None:intergenic 35.0%
TACCAATGCTGAAAGACATA+AGG + chr4_4:71268594-71268613 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG - chr4_4:71268648-71268667 Msa0700320:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG - chr4_4:71268931-71268950 Msa0700320:five_prime_UTR 35.0%
GTTGGATGGAGATGAAAAAT+GGG - chr4_4:71268932-71268951 Msa0700320:five_prime_UTR 35.0%
GATGAAAAATGGGTGTGTTA+TGG - chr4_4:71268942-71268961 Msa0700320:five_prime_UTR 35.0%
GTATGGAATGGAAGAATCAA+CGG - chr4_4:71269001-71269020 Msa0700320:five_prime_UTR 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG - chr4_4:71269090-71269109 Msa0700320:five_prime_UTR 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG - chr4_4:71269091-71269110 Msa0700320:five_prime_UTR 35.0%
TGAAGGAAGATCCTACATAT+AGG - chr4_4:71269145-71269164 Msa0700320:five_prime_UTR 35.0%
! AAACTTTGCGTCCACAATTT+TGG - chr4_4:71269371-71269390 Msa0700320:five_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG + chr4_4:71269385-71269404 None:intergenic 35.0%
CTGATCATGGATACATCATT+GGG + chr4_4:71267429-71267448 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG + chr4_4:71267430-71267449 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG - chr4_4:71267563-71267582 Msa0700320:three_prime_UTR 35.0%
GAGGTTATCTGAAAAGCTTA+TGG - chr4_4:71267582-71267601 Msa0700320:exon 35.0%
AAGAGAGTGAAAGTTACAGT+TGG - chr4_4:71267837-71267856 Msa0700320:CDS 35.0%
CATGTTCAAATGACCTATAC+TGG - chr4_4:71267871-71267890 Msa0700320:CDS 35.0%
TGTTGAGTATCAACCAGTAT+AGG + chr4_4:71267887-71267906 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG - chr4_4:71267905-71267924 Msa0700320:CDS 35.0%
GCATTGTTTGGTTGATTGAT+TGG - chr4_4:71267917-71267936 Msa0700320:CDS 35.0%
CTTCTCTTGATTCACCATAT+TGG + chr4_4:71268054-71268073 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG - chr4_4:71268135-71268154 Msa0700320:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG + chr4_4:71268164-71268183 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG - chr4_4:71268314-71268333 Msa0700320:intron 35.0%
TGAAGGAAAAGGAAGTCATT+GGG - chr4_4:71268331-71268350 Msa0700320:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG - chr4_4:71268439-71268458 Msa0700320:CDS 35.0%
TGTCGAGGTTGGAATTATAT+TGG + chr4_4:71268514-71268533 None:intergenic 35.0%
AATATAATTCCAACCTCGAC+AGG - chr4_4:71268513-71268532 Msa0700320:CDS 35.0%
TAATACAAACATACCTGTCG+AGG + chr4_4:71268529-71268548 None:intergenic 35.0%
TACCAATGCTGAAAGACATA+AGG + chr4_4:71268594-71268613 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG - chr4_4:71268648-71268667 Msa0700320:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG - chr4_4:71268931-71268950 Msa0700320:five_prime_UTR 35.0%
GTTGGATGGAGATGAAAAAT+GGG - chr4_4:71268932-71268951 Msa0700320:five_prime_UTR 35.0%
GATGAAAAATGGGTGTGTTA+TGG - chr4_4:71268942-71268961 Msa0700320:five_prime_UTR 35.0%
GTATGGAATGGAAGAATCAA+CGG - chr4_4:71269001-71269020 Msa0700320:five_prime_UTR 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG - chr4_4:71269090-71269109 Msa0700320:five_prime_UTR 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG - chr4_4:71269091-71269110 Msa0700320:five_prime_UTR 35.0%
TGAAGGAAGATCCTACATAT+AGG - chr4_4:71269145-71269164 Msa0700320:five_prime_UTR 35.0%
! AAACTTTGCGTCCACAATTT+TGG - chr4_4:71269371-71269390 Msa0700320:five_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG + chr4_4:71269385-71269404 None:intergenic 35.0%
! GAGAAGCCATCTCTTTTGAA+AGG - chr4_4:71268068-71268087 Msa0700320:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG - chr4_4:71268071-71268090 Msa0700320:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG + chr4_4:71268077-71268096 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG - chr4_4:71268134-71268153 Msa0700320:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG + chr4_4:71268200-71268219 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG - chr4_4:71268199-71268218 Msa0700320:CDS 40.0%
CGTTCTAACTTCCTAGCTAT+GGG - chr4_4:71268200-71268219 Msa0700320:CDS 40.0%
ATTCATAACCGTGCGAAAGT+TGG - chr4_4:71268265-71268284 Msa0700320:intron 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG - chr4_4:71268320-71268339 Msa0700320:intron 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG - chr4_4:71268330-71268349 Msa0700320:CDS 40.0%
TGGGAGGTTATGGATTCATT+TGG - chr4_4:71268350-71268369 Msa0700320:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG - chr4_4:71268422-71268441 Msa0700320:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG - chr4_4:71268484-71268503 Msa0700320:CDS 40.0%
GTCCTTATGTCTTTCAGCAT+TGG - chr4_4:71268589-71268608 Msa0700320:CDS 40.0%
TGTCAAACATGAATGTGGCT+CGG - chr4_4:71268653-71268672 Msa0700320:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG - chr4_4:71268682-71268701 Msa0700320:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG - chr4_4:71268700-71268719 Msa0700320:CDS 40.0%
GTTTATGCTGTTGGAGGATA+TGG - chr4_4:71268709-71268728 Msa0700320:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG + chr4_4:71268761-71268780 None:intergenic 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG - chr4_4:71269128-71269147 Msa0700320:five_prime_UTR 40.0%
CTTGTGCAGTGTAACTATCA+AGG - chr4_4:71269242-71269261 Msa0700320:five_prime_UTR 40.0%
TGTAACTATCAAGGCCTGAA+AGG - chr4_4:71269251-71269270 Msa0700320:five_prime_UTR 40.0%
GTAACTATCAAGGCCTGAAA+GGG - chr4_4:71269252-71269271 Msa0700320:five_prime_UTR 40.0%
ACTGAAGACCTTGATAGAGT+TGG - chr4_4:71269289-71269308 Msa0700320:five_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG - chr4_4:71269303-71269322 Msa0700320:five_prime_UTR 40.0%
! GAGAAGCCATCTCTTTTGAA+AGG - chr4_4:71268068-71268087 Msa0700320:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG - chr4_4:71268071-71268090 Msa0700320:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG + chr4_4:71268077-71268096 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG - chr4_4:71268134-71268153 Msa0700320:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG + chr4_4:71268200-71268219 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG - chr4_4:71268199-71268218 Msa0700320:CDS 40.0%
CGTTCTAACTTCCTAGCTAT+GGG - chr4_4:71268200-71268219 Msa0700320:CDS 40.0%
ATTCATAACCGTGCGAAAGT+TGG - chr4_4:71268265-71268284 Msa0700320:intron 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG - chr4_4:71268320-71268339 Msa0700320:intron 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG - chr4_4:71268330-71268349 Msa0700320:CDS 40.0%
TGGGAGGTTATGGATTCATT+TGG - chr4_4:71268350-71268369 Msa0700320:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG - chr4_4:71268422-71268441 Msa0700320:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG - chr4_4:71268484-71268503 Msa0700320:CDS 40.0%
GTCCTTATGTCTTTCAGCAT+TGG - chr4_4:71268589-71268608 Msa0700320:CDS 40.0%
TGTCAAACATGAATGTGGCT+CGG - chr4_4:71268653-71268672 Msa0700320:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG - chr4_4:71268682-71268701 Msa0700320:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG - chr4_4:71268700-71268719 Msa0700320:CDS 40.0%
GTTTATGCTGTTGGAGGATA+TGG - chr4_4:71268709-71268728 Msa0700320:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG + chr4_4:71268761-71268780 None:intergenic 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG - chr4_4:71269128-71269147 Msa0700320:five_prime_UTR 40.0%
CTTGTGCAGTGTAACTATCA+AGG - chr4_4:71269242-71269261 Msa0700320:five_prime_UTR 40.0%
TGTAACTATCAAGGCCTGAA+AGG - chr4_4:71269251-71269270 Msa0700320:five_prime_UTR 40.0%
GTAACTATCAAGGCCTGAAA+GGG - chr4_4:71269252-71269271 Msa0700320:five_prime_UTR 40.0%
ACTGAAGACCTTGATAGAGT+TGG - chr4_4:71269289-71269308 Msa0700320:five_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG - chr4_4:71269303-71269322 Msa0700320:five_prime_UTR 40.0%
CATTTGAACATGCCAAGCCT+CGG + chr4_4:71267863-71267882 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG + chr4_4:71268002-71268021 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG - chr4_4:71268084-71268103 Msa0700320:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG - chr4_4:71268203-71268222 Msa0700320:CDS 45.0%
AGGAAAAGGAAGTCATTGGG+AGG - chr4_4:71268334-71268353 Msa0700320:CDS 45.0%
AGGAAGTCATTGGGAGGTTA+TGG - chr4_4:71268340-71268359 Msa0700320:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG - chr4_4:71268443-71268462 Msa0700320:CDS 45.0%
GCTGGCTATTCATCAACTGA+TGG - chr4_4:71268461-71268480 Msa0700320:CDS 45.0%
ACAAACATACCTGTCGAGGT+TGG + chr4_4:71268525-71268544 None:intergenic 45.0%
TTGTGCAGAAGTCAATGGCT+TGG - chr4_4:71268687-71268706 Msa0700320:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG - chr4_4:71268767-71268786 Msa0700320:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG + chr4_4:71268775-71268794 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG - chr4_4:71268825-71268844 Msa0700320:CDS 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG - chr4_4:71268826-71268845 Msa0700320:CDS 45.0%
! ACAACCCTGAGAAGCATAGT+TGG - chr4_4:71268914-71268933 Msa0700320:five_prime_UTR 45.0%
CCATCCAACTATGCTTCTCA+GGG + chr4_4:71268921-71268940 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG + chr4_4:71268922-71268941 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG - chr4_4:71269176-71269195 Msa0700320:five_prime_UTR 45.0%
TATGATCCAAATGCAGAGCC+GGG - chr4_4:71269177-71269196 Msa0700320:five_prime_UTR 45.0%
CAGATGCAGTAAACCCTTTC+AGG + chr4_4:71269268-71269287 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG - chr4_4:71269295-71269314 Msa0700320:five_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG + chr4_4:71269300-71269319 None:intergenic 45.0%
CATTTGAACATGCCAAGCCT+CGG + chr4_4:71267863-71267882 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG + chr4_4:71268002-71268021 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG - chr4_4:71268084-71268103 Msa0700320:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG - chr4_4:71268203-71268222 Msa0700320:CDS 45.0%
AGGAAAAGGAAGTCATTGGG+AGG - chr4_4:71268334-71268353 Msa0700320:CDS 45.0%
AGGAAGTCATTGGGAGGTTA+TGG - chr4_4:71268340-71268359 Msa0700320:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG - chr4_4:71268443-71268462 Msa0700320:CDS 45.0%
GCTGGCTATTCATCAACTGA+TGG - chr4_4:71268461-71268480 Msa0700320:CDS 45.0%
ACAAACATACCTGTCGAGGT+TGG + chr4_4:71268525-71268544 None:intergenic 45.0%
TTGTGCAGAAGTCAATGGCT+TGG - chr4_4:71268687-71268706 Msa0700320:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG - chr4_4:71268767-71268786 Msa0700320:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG + chr4_4:71268775-71268794 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG - chr4_4:71268825-71268844 Msa0700320:CDS 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG - chr4_4:71268826-71268845 Msa0700320:CDS 45.0%
! ACAACCCTGAGAAGCATAGT+TGG - chr4_4:71268914-71268933 Msa0700320:five_prime_UTR 45.0%
CCATCCAACTATGCTTCTCA+GGG + chr4_4:71268921-71268940 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG + chr4_4:71268922-71268941 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG - chr4_4:71269176-71269195 Msa0700320:five_prime_UTR 45.0%
TATGATCCAAATGCAGAGCC+GGG - chr4_4:71269177-71269196 Msa0700320:five_prime_UTR 45.0%
CAGATGCAGTAAACCCTTTC+AGG + chr4_4:71269268-71269287 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG - chr4_4:71269295-71269314 Msa0700320:five_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG + chr4_4:71269300-71269319 None:intergenic 45.0%
GTGAAAGTTACAGTTGGCCG+AGG - chr4_4:71267843-71267862 Msa0700320:CDS 50.0%
TGGTCATAGTGTGAGGTCTG+AGG - chr4_4:71268091-71268110 Msa0700320:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG + chr4_4:71268145-71268164 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG + chr4_4:71268146-71268165 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG + chr4_4:71268214-71268233 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG - chr4_4:71268219-71268238 Msa0700320:intron 50.0%
ATAACCGTGCGAAAGTTGGC+TGG - chr4_4:71268269-71268288 Msa0700320:intron 50.0%
TAACCGTGCGAAAGTTGGCT+GGG - chr4_4:71268270-71268289 Msa0700320:intron 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG + chr4_4:71268385-71268404 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+AGG - chr4_4:71268703-71268722 Msa0700320:CDS 50.0%
GTTGGAGGATATGGAGCAGA+AGG - chr4_4:71268718-71268737 Msa0700320:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG - chr4_4:71268843-71268862 Msa0700320:CDS 50.0%
GAGGGCAAGCTCTATGTGAT+GGG - chr4_4:71268844-71268863 Msa0700320:CDS 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG - chr4_4:71268851-71268870 Msa0700320:exon 50.0%
GGAAGGTCGAGCTTCACAAT+TGG - chr4_4:71268868-71268887 Msa0700320:exon 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG - chr4_4:71268918-71268937 Msa0700320:five_prime_UTR 50.0%
ATGATCCAAATGCAGAGCCG+GGG - chr4_4:71269178-71269197 Msa0700320:five_prime_UTR 50.0%
CTGCACAAGCACAAACCAGA+TGG + chr4_4:71269231-71269250 None:intergenic 50.0%
GTGAAAGTTACAGTTGGCCG+AGG - chr4_4:71267843-71267862 Msa0700320:CDS 50.0%
TGGTCATAGTGTGAGGTCTG+AGG - chr4_4:71268091-71268110 Msa0700320:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG + chr4_4:71268145-71268164 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG + chr4_4:71268146-71268165 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG + chr4_4:71268214-71268233 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG - chr4_4:71268219-71268238 Msa0700320:intron 50.0%
ATAACCGTGCGAAAGTTGGC+TGG - chr4_4:71268269-71268288 Msa0700320:intron 50.0%
TAACCGTGCGAAAGTTGGCT+GGG - chr4_4:71268270-71268289 Msa0700320:intron 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG + chr4_4:71268385-71268404 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+AGG - chr4_4:71268703-71268722 Msa0700320:CDS 50.0%
GTTGGAGGATATGGAGCAGA+AGG - chr4_4:71268718-71268737 Msa0700320:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG - chr4_4:71268843-71268862 Msa0700320:CDS 50.0%
GAGGGCAAGCTCTATGTGAT+GGG - chr4_4:71268844-71268863 Msa0700320:CDS 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG - chr4_4:71268851-71268870 Msa0700320:exon 50.0%
GGAAGGTCGAGCTTCACAAT+TGG - chr4_4:71268868-71268887 Msa0700320:exon 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG - chr4_4:71268918-71268937 Msa0700320:five_prime_UTR 50.0%
ATGATCCAAATGCAGAGCCG+GGG - chr4_4:71269178-71269197 Msa0700320:five_prime_UTR 50.0%
CTGCACAAGCACAAACCAGA+TGG + chr4_4:71269231-71269250 None:intergenic 50.0%
AGTTACAGTTGGCCGAGGCT+TGG - chr4_4:71267848-71267867 Msa0700320:CDS 55.0%
TAGAACGAGGCACGAGTGCA+AGG + chr4_4:71268187-71268206 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG - chr4_4:71268280-71268299 Msa0700320:intron 55.0%
CGATCTCTTCCACCAATGCC+TGG - chr4_4:71268383-71268402 Msa0700320:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG - chr4_4:71268390-71268409 Msa0700320:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG + chr4_4:71268395-71268414 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG - chr4_4:71268394-71268413 Msa0700320:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG - chr4_4:71268405-71268424 Msa0700320:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG - chr4_4:71268406-71268425 Msa0700320:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG - chr4_4:71268753-71268772 Msa0700320:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG - chr4_4:71268800-71268819 Msa0700320:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG - chr4_4:71268801-71268820 Msa0700320:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG - chr4_4:71268802-71268821 Msa0700320:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG + chr4_4:71268807-71268826 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG + chr4_4:71268817-71268836 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG - chr4_4:71268817-71268836 Msa0700320:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG + chr4_4:71268836-71268855 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG - chr4_4:71268847-71268866 Msa0700320:CDS 55.0%
AACGGTACCAGTACCCCTGA+CGG - chr4_4:71269062-71269081 Msa0700320:five_prime_UTR 55.0%
AACACTCGAACTCCCCGTCA+GGG + chr4_4:71269079-71269098 None:intergenic 55.0%
AGTTACAGTTGGCCGAGGCT+TGG - chr4_4:71267848-71267867 Msa0700320:CDS 55.0%
TAGAACGAGGCACGAGTGCA+AGG + chr4_4:71268187-71268206 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG - chr4_4:71268280-71268299 Msa0700320:intron 55.0%
CGATCTCTTCCACCAATGCC+TGG - chr4_4:71268383-71268402 Msa0700320:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG - chr4_4:71268390-71268409 Msa0700320:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG + chr4_4:71268395-71268414 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG - chr4_4:71268394-71268413 Msa0700320:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG - chr4_4:71268405-71268424 Msa0700320:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG - chr4_4:71268406-71268425 Msa0700320:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG - chr4_4:71268753-71268772 Msa0700320:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG - chr4_4:71268800-71268819 Msa0700320:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG - chr4_4:71268801-71268820 Msa0700320:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG - chr4_4:71268802-71268821 Msa0700320:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG + chr4_4:71268807-71268826 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG + chr4_4:71268817-71268836 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG - chr4_4:71268817-71268836 Msa0700320:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG + chr4_4:71268836-71268855 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG - chr4_4:71268847-71268866 Msa0700320:CDS 55.0%
AACGGTACCAGTACCCCTGA+CGG - chr4_4:71269062-71269081 Msa0700320:five_prime_UTR 55.0%
AACACTCGAACTCCCCGTCA+GGG + chr4_4:71269079-71269098 None:intergenic 55.0%
CAGCCCAGCCAACTTTCGCA+CGG + chr4_4:71268276-71268295 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG + chr4_4:71268398-71268417 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG - chr4_4:71268398-71268417 Msa0700320:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG - chr4_4:71268399-71268418 Msa0700320:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG + chr4_4:71268404-71268423 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG - chr4_4:71268404-71268423 Msa0700320:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG + chr4_4:71268410-71268429 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG - chr4_4:71268412-71268431 Msa0700320:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG + chr4_4:71268755-71268774 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG - chr4_4:71269063-71269082 Msa0700320:five_prime_UTR 60.0%
ACACTCGAACTCCCCGTCAG+GGG + chr4_4:71269078-71269097 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG + chr4_4:71269080-71269099 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG - chr4_4:71269078-71269097 Msa0700320:five_prime_UTR 60.0%
TCACACCCCGGCTCTGCATT+TGG + chr4_4:71269186-71269205 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG + chr4_4:71269198-71269217 None:intergenic 60.0%
CAGCCCAGCCAACTTTCGCA+CGG + chr4_4:71268276-71268295 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG + chr4_4:71268398-71268417 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG - chr4_4:71268398-71268417 Msa0700320:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG - chr4_4:71268399-71268418 Msa0700320:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG + chr4_4:71268404-71268423 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG - chr4_4:71268404-71268423 Msa0700320:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG + chr4_4:71268410-71268429 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG - chr4_4:71268412-71268431 Msa0700320:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG + chr4_4:71268755-71268774 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG - chr4_4:71269063-71269082 Msa0700320:five_prime_UTR 60.0%
ACACTCGAACTCCCCGTCAG+GGG + chr4_4:71269078-71269097 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG + chr4_4:71269080-71269099 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG - chr4_4:71269078-71269097 Msa0700320:five_prime_UTR 60.0%
TCACACCCCGGCTCTGCATT+TGG + chr4_4:71269186-71269205 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG + chr4_4:71269198-71269217 None:intergenic 60.0%
TGGCTGGGCTGCTTGAGGAG+TGG - chr4_4:71268285-71268304 Msa0700320:intron 65.0%
TGACAGTCTCTCCAGCGCCG+AGG - chr4_4:71268741-71268760 Msa0700320:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG - chr4_4:71269064-71269083 Msa0700320:five_prime_UTR 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG + chr4_4:71269072-71269091 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG - chr4_4:71269187-71269206 Msa0700320:five_prime_UTR 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG - chr4_4:71269188-71269207 Msa0700320:five_prime_UTR 65.0%
TGGCTGGGCTGCTTGAGGAG+TGG - chr4_4:71268285-71268304 Msa0700320:intron 65.0%
TGACAGTCTCTCCAGCGCCG+AGG - chr4_4:71268741-71268760 Msa0700320:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG - chr4_4:71269064-71269083 Msa0700320:five_prime_UTR 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG + chr4_4:71269072-71269091 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG - chr4_4:71269187-71269206 Msa0700320:five_prime_UTR 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG - chr4_4:71269188-71269207 Msa0700320:five_prime_UTR 65.0%
GCAGAGCCGGGGTGTGAGTG+GGG - chr4_4:71269189-71269208 Msa0700320:five_prime_UTR 70.0%
GCAGAGCCGGGGTGTGAGTG+GGG - chr4_4:71269189-71269208 Msa0700320:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71267421 71269443 71267421 ID=Msa0700320;Name=Msa0700320
chr4_4 mRNA 71267421 71269443 71267421 ID=Msa0700320-mRNA-1;Parent=Msa0700320;Name=Msa0700320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=575|1|1|1|1|1|2|174|388
chr4_4 exon 71267421 71268222 71267421 ID=Msa0700320-mRNA-1:exon:21694;Parent=Msa0700320-mRNA-1
chr4_4 exon 71268330 71269443 71268330 ID=Msa0700320-mRNA-1:exon:21693;Parent=Msa0700320-mRNA-1
chr4_4 five_prime_UTR 71268869 71269443 71268869 ID=Msa0700320-mRNA-1:five_prime_utr;Parent=Msa0700320-mRNA-1
chr4_4 CDS 71268330 71268868 71268330 ID=Msa0700320-mRNA-1:cds;Parent=Msa0700320-mRNA-1
chr4_4 CDS 71267595 71268222 71267595 ID=Msa0700320-mRNA-1:cds;Parent=Msa0700320-mRNA-1
chr4_4 three_prime_UTR 71267421 71267594 71267421 ID=Msa0700320-mRNA-1:three_prime_utr;Parent=Msa0700320-mRNA-1
Gene Sequence

>Msa0700320

ATGCCTGGTTTTGTGGCTGTCAAGAAGAGATTTTCAGAGAAAAATGTGTGTTTTTCCAATATGGTGAATCAAGAGAAGCCATCTCTTTTGAAAGGTGGTCATAGTGTGAGGTCTGAGGCTGTAGATGATGTTATTGATGATGATAGCCCTATTCTTTCTGGGCTCCCTGATGATGTTTCAAAGCATTGCCTTGCACTCGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGTGTTTGTAAGAGATGGAAATGCTTTATTCAAAGCAAGGAATTCATAACCGTGCGAAAGTTGGCTGGGCTGCTTGAGGAGTGGCTTTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCATTTGGTCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAAGGAAGGCTGGGTTTGGGGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAACTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCCAACCTCGACAGTTGGATCAGATTGTCAAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGATATGGAGCAGAAGGTGACAGTCTCTCCAGCGCCGAGGTTTATGATCCGGATACTGACAAGTGGACAGTGATTGAGAGCCTACGTCGTCCAAGATGGGGATGCTTTGCCTGTGGATTAGAGGGCAAGCTCTATGTGATGGGTGGAAGGTCGAGCTTCACAATTGGAAATTCTAAGTTTGTTGATGTTTACAACCCTGAGAAGCATAGTTGGATGGAGATGAAAAATGGGTGTGTTATGGTAACTGCTCATGCAGTACTAGAAAAGAAATTGTTCTGTATGGAATGGAAGAATCAACGGAAGCTATCGATATTCAATCCAGATGATAATTCATGGAAAACGGTACCAGTACCCCTGACGGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCACTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGAGCCGGGGTGTGAGTGGGGAACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA
Protein sequence

>Msa0700320

MPGFVAVKKRFSEKNVCFSNMVNQEKPSLLKGGHSVRSEAVDDVIDDDSPILSGLPDDVSKHCLALVPRSNFLAMGGVCKRWKCFIQSKEFITVRKLAGLLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPRKAGFGVVVLNGKLLVMAGYSSTDGTVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTVIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKFVDVYNPEKHSWMEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDNSWKTVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAEPGCEWGTTDIKPSGLCLCSVTIKA*