AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656500 MtrunA17_Chr8g0377241 96.907 388 12 0 1 388 1 388 0.0 779
Msa0656500 MtrunA17_Chr3g0122681 75.733 375 86 2 16 388 1 372 0.0 589
Msa0656500 MtrunA17_Chr4g0063531 30.422 332 212 10 26 346 41 364 4.43e-34 130
Msa0656500 MtrunA17_Chr8g0378511 30.466 279 176 7 50 320 76 344 4.93e-31 122
Msa0656500 MtrunA17_Chr8g0348991 28.431 306 182 10 36 322 9 296 4.70e-30 119
Msa0656500 MtrunA17_Chr2g0285851 29.814 322 196 11 16 325 31 334 1.65e-26 109
Msa0656500 MtrunA17_Chr4g0060541 23.939 330 220 9 37 346 17 335 9.11e-22 95.9
Msa0656500 MtrunA17_Chr7g0260051 29.630 216 139 4 49 254 2 214 4.00e-21 93.6
Msa0656500 MtrunA17_Chr2g0278921 24.074 324 204 8 29 323 21 331 8.07e-21 94.0
Msa0656500 MtrunA17_Chr4g0011151 24.551 334 199 9 43 346 93 403 1.10e-20 93.2
Msa0656500 MtrunA17_Chr2g0326541 25.278 360 238 11 37 379 3 348 1.19e-20 92.4
Msa0656500 MtrunA17_Chr4g0011221 24.551 334 199 9 43 346 93 403 2.23e-20 92.4
Msa0656500 MtrunA17_Chr4g0011171 24.251 334 200 9 43 346 93 403 4.29e-20 91.7
Msa0656500 MtrunA17_Chr4g0011161 24.251 334 200 9 43 346 93 403 5.47e-20 91.3
Msa0656500 MtrunA17_Chr4g0010131 23.861 373 228 12 43 386 63 408 4.34e-19 88.2
Msa0656500 MtrunA17_Chr4g0011191 27.273 242 135 7 43 265 93 312 1.16e-18 85.9
Msa0656500 MtrunA17_Chr4g0010161 24.074 324 213 9 42 346 59 368 9.25e-18 84.3
Msa0656500 MtrunA17_Chr2g0281551 38.144 97 58 1 162 256 102 198 2.75e-15 76.6
Msa0656500 MtrunA17_Chr5g0416461 25.926 243 159 6 47 283 125 352 5.45e-15 76.3
Msa0656500 MtrunA17_Chr8g0362081 26.582 237 143 7 58 283 157 373 8.92e-15 75.9
Msa0656500 MtrunA17_Chr3g0129221 27.315 216 146 6 46 257 4 212 2.35e-13 70.9
Msa0656500 MtrunA17_Chr7g0243481 29.310 174 116 5 130 301 97 265 9.49e-13 68.9
Msa0656500 MtrunA17_Chr7g0243481 30.872 149 94 5 131 278 147 287 2.97e-12 67.4
Msa0656500 MtrunA17_Chr8g0378571 22.979 235 163 3 45 263 1 233 1.03e-12 68.6
Msa0656500 MtrunA17_Chr6g0459491 22.981 322 205 11 52 346 57 362 1.19e-12 68.9
Msa0656500 MtrunA17_Chr4g0004201 25.738 237 144 6 51 263 5 233 3.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656500 AT1G67480.3 59.055 381 143 2 8 388 9 376 1.67e-163 463
Msa0656500 AT1G67480.1 59.055 381 143 2 8 388 9 376 1.67e-163 463
Msa0656500 AT1G67480.2 59.055 381 143 2 8 388 9 376 1.67e-163 463
Msa0656500 AT1G27420.1 40.113 354 189 8 44 386 3 344 2.47e-84 261
Msa0656500 AT1G55270.1 31.295 278 173 8 50 319 77 344 2.70e-33 129
Msa0656500 AT5G60570.2 25.826 333 213 10 33 352 38 349 1.03e-23 102
Msa0656500 AT5G60570.1 25.826 333 213 10 33 352 38 349 1.03e-23 102
Msa0656500 AT5G60570.3 25.826 333 213 10 33 352 38 349 1.03e-23 102
Msa0656500 AT1G30090.1 28.070 285 192 7 50 325 52 332 1.07e-23 102
Msa0656500 AT3G61350.2 27.076 277 182 9 51 319 21 285 1.13e-23 101
Msa0656500 AT3G61350.1 27.076 277 182 9 51 319 21 285 1.13e-23 101
Msa0656500 AT1G16250.2 25.726 241 169 4 51 283 8 246 5.30e-22 97.1
Msa0656500 AT1G16250.1 25.726 241 169 4 51 283 8 246 5.30e-22 97.1
Msa0656500 AT2G24540.1 24.359 312 215 7 21 322 1 301 2.14e-21 95.1
Msa0656500 AT1G55270.2 28.761 226 143 8 102 319 3 218 6.32e-19 87.0
Msa0656500 AT3G63220.1 30.093 216 138 4 49 254 2 214 9.68e-19 87.0
Msa0656500 AT3G63220.3 30.093 216 138 4 49 254 9 221 9.73e-19 87.0
Msa0656500 AT3G63220.2 30.093 216 138 4 49 254 9 221 9.73e-19 87.0
Msa0656500 AT2G21950.1 26.441 295 186 11 42 320 9 288 2.03e-18 86.3
Msa0656500 AT1G22040.1 25.132 378 201 12 51 354 43 412 6.15e-18 85.9
Msa0656500 AT3G27150.2 25.305 328 204 11 64 366 83 394 4.36e-17 82.8
Msa0656500 AT3G27150.1 25.305 328 204 11 64 366 83 394 4.36e-17 82.8
Msa0656500 AT2G44130.1 25.279 269 163 6 51 283 19 285 7.36e-17 82.0
Msa0656500 AT1G26930.1 27.803 223 145 4 38 256 57 267 7.77e-17 82.0
Msa0656500 AT5G26960.1 27.675 271 157 10 47 293 39 294 1.10e-16 81.6
Msa0656500 AT1G74510.2 27.273 231 141 6 62 283 106 318 6.05e-16 79.7
Msa0656500 AT1G74510.1 27.273 231 141 6 62 283 106 318 6.05e-16 79.7
Msa0656500 AT1G74510.3 27.273 231 141 6 62 283 106 318 6.05e-16 79.7
Msa0656500 AT1G80440.1 27.160 243 160 6 51 278 3 243 2.36e-15 77.0
Msa0656500 AT5G01660.2 28.664 307 172 16 56 335 362 648 2.68e-15 78.2
Msa0656500 AT5G01660.1 28.664 307 172 16 56 335 362 648 2.68e-15 78.2
Msa0656500 AT1G26930.2 28.019 207 131 5 38 239 57 250 6.79e-15 75.9
Msa0656500 AT1G14330.1 23.767 223 156 4 37 256 80 291 8.85e-14 72.8
Msa0656500 AT2G02870.2 22.917 240 171 4 47 283 113 341 3.30e-13 71.2
Msa0656500 AT2G02870.3 22.917 240 171 4 47 283 113 341 3.30e-13 71.2
Msa0656500 AT2G02870.1 22.917 240 171 4 47 283 113 341 3.30e-13 71.2
Msa0656500 AT5G40680.1 22.571 319 205 12 53 346 64 365 2.15e-12 68.6
Msa0656500 AT3G46050.1 25.824 182 124 4 52 229 18 192 2.53e-12 68.2
Msa0656500 AT1G15670.1 25.911 247 162 7 51 278 3 247 5.77e-11 63.9

Find 146 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATAGCCCTATTCTTTC+TGG 0.085042 4_3:+65865182 Msa0656500:CDS
GGTCCAAGGAAGGCTGGGTT+TGG 0.218814 4_3:+65865452 Msa0656500:CDS
CAGATGCAGTAAACCCTTTC+AGG 0.220682 4_3:-65866313 None:intergenic
TTAGATTATGATATTGTTTA+CGG 0.244192 4_3:+65864430 None:intergenic
AAAGTTTGCGTCCACAATTT+TGG 0.252340 4_3:+65866419 Msa0656500:three_prime_UTR
TTGATTGTGTGTGTAATTTC+TGG 0.261979 4_3:+65865015 Msa0656500:five_prime_UTR
GTCCAAGGAAGGCTGGGTTT+GGG 0.265699 4_3:+65865453 Msa0656500:CDS
CTTCTCTTGATTCACCATAT+TGG 0.268458 4_3:-65865099 None:intergenic
GGCTGAATAAATCAACTAAT+TGG 0.279878 4_3:-65864844 None:intergenic
GAAGGCTGGGTTTGGGGTTG+TGG 0.291666 4_3:+65865460 Msa0656500:CDS
ATGGCTTGGTTTATGCTGTT+GGG 0.312028 4_3:+65865749 Msa0656500:CDS
TCACACCCCGGCTCTGCATT+TGG 0.312589 4_3:-65866231 None:intergenic
TAACGGAAAGCTTCTTGTTA+TGG 0.323843 4_3:+65865487 Msa0656500:CDS
TGTCGAGGTTGGAATTATAT+TGG 0.350026 4_3:-65865559 None:intergenic
AGCACATAAATATATTCAAT+TGG 0.351012 4_3:-65864556 None:intergenic
GAGGTTATCTGAAAAGCTTA+TGG 0.353926 4_3:+65864625 Msa0656500:five_prime_UTR
GCATTGTTTGGTTGATTGAT+TGG 0.363200 4_3:+65864964 Msa0656500:five_prime_UTR
TCCATCCAACTATGCTTCTC+AGG 0.366765 4_3:-65865967 None:intergenic
ATGCTTTGCCTGTGGATTAG+AGG 0.368919 4_3:+65865873 Msa0656500:CDS
AATGGCTTGGTTTATGCTGT+TGG 0.372011 4_3:+65865748 Msa0656500:CDS
GAATATATTTATGTGCTGTT+TGG 0.377607 4_3:+65864562 Msa0656500:five_prime_UTR
TAAGTATGATTGTAGTGTAC+AGG 0.382030 4_3:+65866387 Msa0656500:three_prime_UTR
ATGATAGCCCTATTCTTTCT+GGG 0.386607 4_3:+65865183 Msa0656500:CDS
GTGAAGGAAAAGGAAGTCAT+TGG 0.394801 4_3:+65865378 Msa0656500:CDS
TCAATCCAGATGATAATTCA+TGG 0.397099 4_3:+65866085 Msa0656500:CDS
ACCCCAAACCCAGCCTTCCT+TGG 0.402488 4_3:-65865455 None:intergenic
ACTGATCATGGATACATCAT+TGG 0.404162 4_3:-65864470 None:intergenic
GCCTTCCTTGGACCAGGCAT+TGG 0.406760 4_3:-65865443 None:intergenic
TGGGAGGTTATGCATTCATT+TGG 0.409845 4_3:+65865398 Msa0656500:CDS
TCGTTCTAACTTCCTAGCTA+TGG 0.419133 4_3:+65865247 Msa0656500:CDS
TTTGGGGTTGTGGTTCTTAA+CGG 0.421717 4_3:+65865470 Msa0656500:CDS
AAGCTTATGGAAATAGATTA+CGG 0.426994 4_3:+65864638 Msa0656500:five_prime_UTR
TTTAGATTTGGGATACTGAA+TGG 0.434123 4_3:+65866150 Msa0656500:CDS
ACTCTCTTCAAGTTTCATAT+CGG 0.436144 4_3:-65864869 None:intergenic
CAACACTCGAACTCCCCGTC+AGG 0.438512 4_3:-65866125 None:intergenic
AGAAAAGAAGTTGTTCTGTA+TGG 0.440457 4_3:+65866032 Msa0656500:CDS
ATGCCTGGTCCAAGGAAGGC+TGG 0.443856 4_3:+65865446 Msa0656500:CDS
TGGCTTGGTTTATGCTGTTG+GGG 0.446258 4_3:+65865750 Msa0656500:CDS
CAATGCTTTGAAACATCATC+AGG 0.446862 4_3:-65865209 None:intergenic
GAACTCCCCGTCAGGGGTAC+TGG 0.449360 4_3:-65866117 None:intergenic
TCCAAGGAAGGCTGGGTTTG+GGG 0.450800 4_3:+65865454 Msa0656500:CDS
CAGGCAAAGCATCCCCATCT+TGG 0.451057 4_3:-65865862 None:intergenic
CAGGGAGCCCAGAAAGAATA+GGG 0.456054 4_3:-65865190 None:intergenic
TCAGGGAGCCCAGAAAGAAT+AGG 0.456310 4_3:-65865191 None:intergenic
TTCCTTGGACCAGGCATTGG+TGG 0.456385 4_3:-65865440 None:intergenic
CATGTTCAAATGACCTATAC+TGG 0.462281 4_3:+65864918 Msa0656500:five_prime_UTR
CGATCTCTTCCACCAATGCC+TGG 0.465067 4_3:+65865431 Msa0656500:CDS
ATAAACATTTATCATATAAG+TGG 0.467994 4_3:-65864758 None:intergenic
TTTGCTTGTGCAGAAGTCAA+TGG 0.468117 4_3:+65865730 Msa0656500:CDS
GCACATAAATATATTCAATT+GGG 0.474265 4_3:-65864555 None:intergenic
ACTGTCCACTTGTCAGTATC+CGG 0.476238 4_3:-65865820 None:intergenic
ATAACCGTGCGAAAGTTGGC+TGG 0.478182 4_3:+65865317 Msa0656500:CDS
TGCAGAGCCGGGGTGTGAGT+GGG 0.483079 4_3:+65866236 Msa0656500:CDS
CGGATCATAAACCTCGGCGC+TGG 0.483389 4_3:-65865800 None:intergenic
ATGCAGAGCCGGGGTGTGAG+TGG 0.485645 4_3:+65866235 Msa0656500:CDS
TAGAGTTGGCAATGGAGTTA+CGG 0.487288 4_3:+65866351 Msa0656500:three_prime_UTR
GGAAGGTCGAGCTTCACAAT+TGG 0.490581 4_3:+65865916 Msa0656500:CDS
AGTTACAGTTGGCCGAGGCT+TGG 0.491656 4_3:+65864895 Msa0656500:five_prime_UTR
AGATGATAATTCATGGAAAA+CGG 0.492908 4_3:+65866092 Msa0656500:CDS
CGTTCTAACTTCCTAGCTAT+GGG 0.493297 4_3:+65865248 Msa0656500:CDS
TCTTCAAGTTTCATATCGGC+TGG 0.493526 4_3:-65864865 None:intergenic
GGAAAGCTTCTTGTTATGGC+TGG 0.494684 4_3:+65865491 Msa0656500:CDS
CTGATCATGGATACATCATT+GGG 0.499398 4_3:-65864469 None:intergenic
TGAAGGAAGATCCTACATAT+AGG 0.500461 4_3:+65866193 Msa0656500:CDS
ACTACTGATATAAAACCATC+TGG 0.501116 4_3:+65866261 Msa0656500:CDS
ACAACCCTGAGAAGCATAGT+TGG 0.505267 4_3:+65865962 Msa0656500:CDS
AACCCAGCCTTCCTTGGACC+AGG 0.506388 4_3:-65865449 None:intergenic
GTATGATCCAAATGCAGAGC+CGG 0.507910 4_3:+65866224 Msa0656500:CDS
GTTGTATATTTCTATAACAA+AGG 0.508050 4_3:-65864736 None:intergenic
ACAGCTGATAGTGAAGGAAA+AGG 0.509911 4_3:+65865368 Msa0656500:CDS
AATATAATTCCAACCTCGAC+AGG 0.511389 4_3:+65865561 Msa0656500:CDS
ATTCATAACCGTGCGAAAGT+TGG 0.517003 4_3:+65865313 Msa0656500:CDS
CTCCATTGCCAACTCTATCA+AGG 0.517201 4_3:-65866345 None:intergenic
TATGATCCAAATGCAGAGCC+GGG 0.520838 4_3:+65866225 Msa0656500:CDS
TGCTTTGCCTGTGGATTAGA+GGG 0.520938 4_3:+65865874 Msa0656500:CDS
TGAAGGAAAAGGAAGTCATT+GGG 0.524940 4_3:+65865379 Msa0656500:CDS
TGGCTGGGCTGCTTGAGGAG+TGG 0.526642 4_3:+65865333 Msa0656500:CDS
TTCTTGACAGCCACAAAACC+AGG 0.528566 4_3:-65865047 None:intergenic
GAGCCTACGTCGTCCAAGAT+GGG 0.534088 4_3:+65865849 Msa0656500:CDS
TGCCTGGTCCAAGGAAGGCT+GGG 0.535078 4_3:+65865447 Msa0656500:CDS
AACTGTTTCTGTTTCAGCAG+AGG 0.535322 4_3:+65865532 Msa0656500:CDS
AGAGCCTACGTCGTCCAAGA+TGG 0.538278 4_3:+65865848 Msa0656500:CDS
ACGGTACCAGTACCCCTGAC+GGG 0.539002 4_3:+65866111 Msa0656500:CDS
GTAACTATCAAGGCCTGAAA+GGG 0.541292 4_3:+65866300 Msa0656500:exon
TAATGTTGCAGCCAAAATTG+TGG 0.541418 4_3:-65866430 None:intergenic
AGAGGGCAAGCTCTATGTGA+TGG 0.545728 4_3:+65865891 Msa0656500:CDS
TGGGCGGTGTTTGTAAGAGA+TGG 0.546805 4_3:+65865267 Msa0656500:CDS
CAGCGCCGAGGTTTATGATC+CGG 0.546819 4_3:+65865801 Msa0656500:CDS
GAAATGCTTTATTCAAAGCA+AGG 0.547489 4_3:+65865289 Msa0656500:CDS
CAGGCATTGGTGGAAGAGAT+CGG 0.553729 4_3:-65865430 None:intergenic
GCAGAGCCGGGGTGTGAGTG+GGG 0.555640 4_3:+65866237 Msa0656500:CDS
GGCTTGGTTTATGCTGTTGG+GGG 0.556714 4_3:+65865751 Msa0656500:CDS
AGCTCTATGTGATGGGTGGA+AGG 0.558333 4_3:+65865899 Msa0656500:CDS
AAGTATGATTGTAGTGTACA+GGG 0.559660 4_3:+65866388 Msa0656500:three_prime_UTR
TACAAACACCGCCCATAGCT+AGG 0.562469 4_3:-65865259 None:intergenic
GTGAAAGTTACAGTTGGCCG+AGG 0.564811 4_3:+65864890 Msa0656500:five_prime_UTR
TAGAACGAGGCACGAGTGCA+AGG 0.565540 4_3:-65865232 None:intergenic
CTTGTGCAGTGTAACTATCA+AGG 0.565566 4_3:+65866290 Msa0656500:CDS
TTCCACCAATGCCTGGTCCA+AGG 0.568289 4_3:+65865438 Msa0656500:CDS
ACCAATGCCTGGTCCAAGGA+AGG 0.569574 4_3:+65865442 Msa0656500:CDS
CTGACGGGGAGTTCGAGTGT+TGG 0.569934 4_3:+65866126 Msa0656500:CDS
AACGGTACCAGTACCCCTGA+CGG 0.571696 4_3:+65866110 Msa0656500:CDS
TGACCACCTTTCAAAAGAGA+TGG 0.572189 4_3:-65865122 None:intergenic
CATTTGAACATGCCAAGCCT+CGG 0.574937 4_3:-65864907 None:intergenic
TGTAACTATCAAGGCCTGAA+AGG 0.575632 4_3:+65866299 Msa0656500:exon
ACAAACATACCTGTCGAGGT+TGG 0.576689 4_3:-65865570 None:intergenic
ACTGAAGACCTTGATAGAGT+TGG 0.578250 4_3:+65866337 Msa0656500:three_prime_UTR
AACACTCGAACTCCCCGTCA+GGG 0.578430 4_3:-65866124 None:intergenic
GAGCTTGCCCTCTAATCCAC+AGG 0.578491 4_3:-65865881 None:intergenic
TACAACAAAGTCCTATATGT+AGG 0.579564 4_3:-65866204 None:intergenic
TTGTGCAGAAGTCAATGGCT+TGG 0.583821 4_3:+65865735 Msa0656500:CDS
CCCTGAGAAGCATAGTTGGA+TGG 0.584644 4_3:+65865966 Msa0656500:CDS
GAGGGCAAGCTCTATGTGAT+GGG 0.587604 4_3:+65865892 Msa0656500:CDS
TGTTGAGTATCAACCAGTAT+AGG 0.588393 4_3:-65864931 None:intergenic
TAACCGTGCGAAAGTTGGCT+GGG 0.589238 4_3:+65865318 Msa0656500:CDS
GACCTTGATAGAGTTGGCAA+TGG 0.591899 4_3:+65866343 Msa0656500:three_prime_UTR
GTATGGAGTGGAAGAATCAA+CGG 0.593792 4_3:+65866049 Msa0656500:CDS
CCATCCAACTATGCTTCTCA+GGG 0.596718 4_3:-65865966 None:intergenic
AAAGTTGGCTGGGCTGCTTG+AGG 0.599240 4_3:+65865328 Msa0656500:CDS
AGATGGGGATGCTTTGCCTG+TGG 0.599321 4_3:+65865865 Msa0656500:CDS
AGAAGTTGTTCTGTATGGAG+TGG 0.605756 4_3:+65866037 Msa0656500:CDS
ATCTTAACAGCTGATAGTGA+AGG 0.613279 4_3:+65865362 Msa0656500:CDS
GGCAAGCTCTATGTGATGGG+TGG 0.613940 4_3:+65865895 Msa0656500:CDS
AAGAGAGTGAAAGTTACAGT+TGG 0.615991 4_3:+65864884 Msa0656500:five_prime_UTR
TGAAAGGTGGTCATAGTGTG+AGG 0.621543 4_3:+65865132 Msa0656500:CDS
CAGATTGTCAAACATGAATG+TGG 0.623397 4_3:+65865696 Msa0656500:CDS
CAGCCCAGCCAACTTTCGCA+CGG 0.624024 4_3:-65865321 None:intergenic
AGCCTACGTCGTCCAAGATG+GGG 0.626968 4_3:+65865850 Msa0656500:CDS
CGGTACCAGTACCCCTGACG+GGG 0.627409 4_3:+65866112 Msa0656500:CDS
TAATACAAACATACCTGTCG+AGG 0.630233 4_3:-65865574 None:intergenic
CTGCACAAGCACAAACCAGA+TGG 0.631169 4_3:-65866276 None:intergenic
TGTCAAACATGAATGTGGCT+CGG 0.636616 4_3:+65865701 Msa0656500:CDS
TGAAAATAAACTTAACACGA+GGG 0.643434 4_3:-65864666 None:intergenic
ACACTCGAACTCCCCGTCAG+GGG 0.650821 4_3:-65866123 None:intergenic
ATGATCCGGATACTGACAAG+TGG 0.668925 4_3:+65865815 Msa0656500:CDS
TGGTCATAGTGTGAGGTCTG+AGG 0.676031 4_3:+65865139 Msa0656500:CDS
GTAGTTCCCCACTCACACCC+CGG 0.676823 4_3:-65866243 None:intergenic
ATGAAAATAAACTTAACACG+AGG 0.678200 4_3:-65864667 None:intergenic
AATGCTTTGAAACATCATCA+GGG 0.680105 4_3:-65865208 None:intergenic
TCTAACTTCCTAGCTATGGG+CGG 0.680814 4_3:+65865251 Msa0656500:CDS
TGACAGTCTCTCCAGCGCCG+AGG 0.686649 4_3:+65865789 Msa0656500:CDS
AGGAAAAGGAAGTCATTGGG+AGG 0.693227 4_3:+65865382 Msa0656500:CDS
ATGATCCAAATGCAGAGCCG+GGG 0.695271 4_3:+65866226 Msa0656500:CDS
AGTATCCGGATCATAAACCT+CGG 0.700429 4_3:-65865806 None:intergenic
ATCCCCATCTTGGACGACGT+AGG 0.772673 4_3:-65865852 None:intergenic
ATAGCTAGGAAGTTAGAACG+AGG 0.777780 4_3:-65865245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCATAAGTTCTTTT+TGG + chr4_3:65864680-65864699 Msa0656500:five_prime_UTR 15.0%
!! ATAAACATTTATCATATAAG+TGG - chr4_3:65864761-65864780 None:intergenic 15.0%
!!! TTATTTTCATAAGTTCTTTT+TGG + chr4_3:65864680-65864699 Msa0656500:five_prime_UTR 15.0%
!! ATAAACATTTATCATATAAG+TGG - chr4_3:65864761-65864780 None:intergenic 15.0%
!! TTAAAAATAAATGAATCTGC+AGG - chr4_3:65864521-65864540 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG - chr4_3:65864558-65864577 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG - chr4_3:65864559-65864578 None:intergenic 20.0%
!!! GTTGTATATTTCTATAACAA+AGG - chr4_3:65864739-65864758 None:intergenic 20.0%
!! TTAAAAATAAATGAATCTGC+AGG - chr4_3:65864521-65864540 None:intergenic 20.0%
!! GCACATAAATATATTCAATT+GGG - chr4_3:65864558-65864577 None:intergenic 20.0%
!! AGCACATAAATATATTCAAT+TGG - chr4_3:65864559-65864578 None:intergenic 20.0%
!!! GTTGTATATTTCTATAACAA+AGG - chr4_3:65864739-65864758 None:intergenic 20.0%
!! GAATATATTTATGTGCTGTT+TGG + chr4_3:65864562-65864581 Msa0656500:five_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG + chr4_3:65864638-65864657 Msa0656500:five_prime_UTR 25.0%
! TGAAAATAAACTTAACACGA+GGG - chr4_3:65864669-65864688 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG - chr4_3:65864670-65864689 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG - chr4_3:65864836-65864855 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG + chr4_3:65865085-65865104 Msa0656500:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG + chr4_3:65865671-65865690 Msa0656500:intron 25.0%
! AGATGATAATTCATGGAAAA+CGG + chr4_3:65866092-65866111 Msa0656500:CDS 25.0%
!! GAATATATTTATGTGCTGTT+TGG + chr4_3:65864562-65864581 Msa0656500:five_prime_UTR 25.0%
! AAGCTTATGGAAATAGATTA+CGG + chr4_3:65864638-65864657 Msa0656500:five_prime_UTR 25.0%
! TGAAAATAAACTTAACACGA+GGG - chr4_3:65864669-65864688 None:intergenic 25.0%
! ATGAAAATAAACTTAACACG+AGG - chr4_3:65864670-65864689 None:intergenic 25.0%
! TCAACTAATTGGAGAAAAAA+AGG - chr4_3:65864836-65864855 None:intergenic 25.0%
!! AAATGTGTGTTTTTCCAATA+TGG + chr4_3:65865085-65865104 Msa0656500:CDS 25.0%
! TTTGTAATTGATATTGCAGT+TGG + chr4_3:65865671-65865690 Msa0656500:intron 25.0%
! AGATGATAATTCATGGAAAA+CGG + chr4_3:65866092-65866111 Msa0656500:CDS 25.0%
AAAAAACACATCACTGATCA+TGG - chr4_3:65864485-65864504 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG + chr4_3:65864484-65864503 Msa0656500:five_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG - chr4_3:65864847-65864866 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG - chr4_3:65864872-65864891 None:intergenic 30.0%
TTGATTGTGTGTGTAATTTC+TGG + chr4_3:65865015-65865034 Msa0656500:five_prime_UTR 30.0%
!! AATTTCTGGTTAAAAATGCC+TGG + chr4_3:65865029-65865048 Msa0656500:exon 30.0%
!! AATGCTTTGAAACATCATCA+GGG - chr4_3:65865211-65865230 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG + chr4_3:65865289-65865308 Msa0656500:CDS 30.0%
AGAAAAGAAGTTGTTCTGTA+TGG + chr4_3:65866032-65866051 Msa0656500:CDS 30.0%
TCAATCCAGATGATAATTCA+TGG + chr4_3:65866085-65866104 Msa0656500:CDS 30.0%
! GTTTTCCATGAATTATCATC+TGG - chr4_3:65866093-65866112 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG + chr4_3:65866150-65866169 Msa0656500:CDS 30.0%
TACAACAAAGTCCTATATGT+AGG - chr4_3:65866207-65866226 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG + chr4_3:65866261-65866280 Msa0656500:CDS 30.0%
TAAGTATGATTGTAGTGTAC+AGG + chr4_3:65866387-65866406 Msa0656500:three_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG + chr4_3:65866388-65866407 Msa0656500:three_prime_UTR 30.0%
AAAAAACACATCACTGATCA+TGG - chr4_3:65864485-65864504 None:intergenic 30.0%
!!! ATGATCAGTGATGTGTTTTT+TGG + chr4_3:65864484-65864503 Msa0656500:five_prime_UTR 30.0%
GGCTGAATAAATCAACTAAT+TGG - chr4_3:65864847-65864866 None:intergenic 30.0%
! ACTCTCTTCAAGTTTCATAT+CGG - chr4_3:65864872-65864891 None:intergenic 30.0%
TTGATTGTGTGTGTAATTTC+TGG + chr4_3:65865015-65865034 Msa0656500:five_prime_UTR 30.0%
!! AATTTCTGGTTAAAAATGCC+TGG + chr4_3:65865029-65865048 Msa0656500:exon 30.0%
!! AATGCTTTGAAACATCATCA+GGG - chr4_3:65865211-65865230 None:intergenic 30.0%
! GAAATGCTTTATTCAAAGCA+AGG + chr4_3:65865289-65865308 Msa0656500:CDS 30.0%
AGAAAAGAAGTTGTTCTGTA+TGG + chr4_3:65866032-65866051 Msa0656500:CDS 30.0%
TCAATCCAGATGATAATTCA+TGG + chr4_3:65866085-65866104 Msa0656500:CDS 30.0%
! GTTTTCCATGAATTATCATC+TGG - chr4_3:65866093-65866112 None:intergenic 30.0%
! TTTAGATTTGGGATACTGAA+TGG + chr4_3:65866150-65866169 Msa0656500:CDS 30.0%
TACAACAAAGTCCTATATGT+AGG - chr4_3:65866207-65866226 None:intergenic 30.0%
ACTACTGATATAAAACCATC+TGG + chr4_3:65866261-65866280 Msa0656500:CDS 30.0%
TAAGTATGATTGTAGTGTAC+AGG + chr4_3:65866387-65866406 Msa0656500:three_prime_UTR 30.0%
AAGTATGATTGTAGTGTACA+GGG + chr4_3:65866388-65866407 Msa0656500:three_prime_UTR 30.0%
CTGATCATGGATACATCATT+GGG - chr4_3:65864472-65864491 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG - chr4_3:65864473-65864492 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG + chr4_3:65864606-65864625 Msa0656500:five_prime_UTR 35.0%
GAGGTTATCTGAAAAGCTTA+TGG + chr4_3:65864625-65864644 Msa0656500:five_prime_UTR 35.0%
AAGAGAGTGAAAGTTACAGT+TGG + chr4_3:65864884-65864903 Msa0656500:five_prime_UTR 35.0%
CATGTTCAAATGACCTATAC+TGG + chr4_3:65864918-65864937 Msa0656500:five_prime_UTR 35.0%
TGTTGAGTATCAACCAGTAT+AGG - chr4_3:65864934-65864953 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG + chr4_3:65864952-65864971 Msa0656500:five_prime_UTR 35.0%
GCATTGTTTGGTTGATTGAT+TGG + chr4_3:65864964-65864983 Msa0656500:five_prime_UTR 35.0%
!!! GTTAAAAATGCCTGGTTTTG+TGG + chr4_3:65865037-65865056 Msa0656500:exon 35.0%
CTTCTCTTGATTCACCATAT+TGG - chr4_3:65865102-65865121 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG + chr4_3:65865183-65865202 Msa0656500:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG - chr4_3:65865212-65865231 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG + chr4_3:65865362-65865381 Msa0656500:CDS 35.0%
TGAAGGAAAAGGAAGTCATT+GGG + chr4_3:65865379-65865398 Msa0656500:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG + chr4_3:65865487-65865506 Msa0656500:CDS 35.0%
TGTCGAGGTTGGAATTATAT+TGG - chr4_3:65865562-65865581 None:intergenic 35.0%
AATATAATTCCAACCTCGAC+AGG + chr4_3:65865561-65865580 Msa0656500:CDS 35.0%
TAATACAAACATACCTGTCG+AGG - chr4_3:65865577-65865596 None:intergenic 35.0%
TACCAATGCTGAAAGACATA+AGG - chr4_3:65865642-65865661 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG + chr4_3:65865696-65865715 Msa0656500:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG + chr4_3:65865979-65865998 Msa0656500:CDS 35.0%
GTTGGATGGAGATGAAAAAT+GGG + chr4_3:65865980-65865999 Msa0656500:CDS 35.0%
GATGAAAAATGGGTGTGTTA+TGG + chr4_3:65865990-65866009 Msa0656500:CDS 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG + chr4_3:65866138-65866157 Msa0656500:CDS 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG + chr4_3:65866139-65866158 Msa0656500:CDS 35.0%
TGAAGGAAGATCCTACATAT+AGG + chr4_3:65866193-65866212 Msa0656500:CDS 35.0%
! AAAGTTTGCGTCCACAATTT+TGG + chr4_3:65866419-65866438 Msa0656500:three_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG - chr4_3:65866433-65866452 None:intergenic 35.0%
CTGATCATGGATACATCATT+GGG - chr4_3:65864472-65864491 None:intergenic 35.0%
ACTGATCATGGATACATCAT+TGG - chr4_3:65864473-65864492 None:intergenic 35.0%
! TACATGCATAAGCACTTTTG+AGG + chr4_3:65864606-65864625 Msa0656500:five_prime_UTR 35.0%
GAGGTTATCTGAAAAGCTTA+TGG + chr4_3:65864625-65864644 Msa0656500:five_prime_UTR 35.0%
AAGAGAGTGAAAGTTACAGT+TGG + chr4_3:65864884-65864903 Msa0656500:five_prime_UTR 35.0%
CATGTTCAAATGACCTATAC+TGG + chr4_3:65864918-65864937 Msa0656500:five_prime_UTR 35.0%
TGTTGAGTATCAACCAGTAT+AGG - chr4_3:65864934-65864953 None:intergenic 35.0%
! CAAGACATTTTCGCATTGTT+TGG + chr4_3:65864952-65864971 Msa0656500:five_prime_UTR 35.0%
GCATTGTTTGGTTGATTGAT+TGG + chr4_3:65864964-65864983 Msa0656500:five_prime_UTR 35.0%
!!! GTTAAAAATGCCTGGTTTTG+TGG + chr4_3:65865037-65865056 Msa0656500:exon 35.0%
CTTCTCTTGATTCACCATAT+TGG - chr4_3:65865102-65865121 None:intergenic 35.0%
ATGATAGCCCTATTCTTTCT+GGG + chr4_3:65865183-65865202 Msa0656500:CDS 35.0%
!! CAATGCTTTGAAACATCATC+AGG - chr4_3:65865212-65865231 None:intergenic 35.0%
! ATCTTAACAGCTGATAGTGA+AGG + chr4_3:65865362-65865381 Msa0656500:CDS 35.0%
TGAAGGAAAAGGAAGTCATT+GGG + chr4_3:65865379-65865398 Msa0656500:CDS 35.0%
TAACGGAAAGCTTCTTGTTA+TGG + chr4_3:65865487-65865506 Msa0656500:CDS 35.0%
TGTCGAGGTTGGAATTATAT+TGG - chr4_3:65865562-65865581 None:intergenic 35.0%
AATATAATTCCAACCTCGAC+AGG + chr4_3:65865561-65865580 Msa0656500:CDS 35.0%
TAATACAAACATACCTGTCG+AGG - chr4_3:65865577-65865596 None:intergenic 35.0%
TACCAATGCTGAAAGACATA+AGG - chr4_3:65865642-65865661 None:intergenic 35.0%
CAGATTGTCAAACATGAATG+TGG + chr4_3:65865696-65865715 Msa0656500:CDS 35.0%
AGTTGGATGGAGATGAAAAA+TGG + chr4_3:65865979-65865998 Msa0656500:CDS 35.0%
GTTGGATGGAGATGAAAAAT+GGG + chr4_3:65865980-65865999 Msa0656500:CDS 35.0%
GATGAAAAATGGGTGTGTTA+TGG + chr4_3:65865990-65866009 Msa0656500:CDS 35.0%
!!! TCGAGTGTTGGTTTTAGATT+TGG + chr4_3:65866138-65866157 Msa0656500:CDS 35.0%
!!! CGAGTGTTGGTTTTAGATTT+GGG + chr4_3:65866139-65866158 Msa0656500:CDS 35.0%
TGAAGGAAGATCCTACATAT+AGG + chr4_3:65866193-65866212 Msa0656500:CDS 35.0%
! AAAGTTTGCGTCCACAATTT+TGG + chr4_3:65866419-65866438 Msa0656500:three_prime_UTR 35.0%
TAATGTTGCAGCCAAAATTG+TGG - chr4_3:65866433-65866452 None:intergenic 35.0%
! TCTTCAAGTTTCATATCGGC+TGG - chr4_3:65864868-65864887 None:intergenic 40.0%
! GAGAAGCCATCTCTTTTGAA+AGG + chr4_3:65865116-65865135 Msa0656500:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG + chr4_3:65865119-65865138 Msa0656500:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG - chr4_3:65865125-65865144 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG + chr4_3:65865182-65865201 Msa0656500:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG - chr4_3:65865248-65865267 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG + chr4_3:65865247-65865266 Msa0656500:CDS 40.0%
CGTTCTAACTTCCTAGCTAT+GGG + chr4_3:65865248-65865267 Msa0656500:CDS 40.0%
ATTCATAACCGTGCGAAAGT+TGG + chr4_3:65865313-65865332 Msa0656500:CDS 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG + chr4_3:65865368-65865387 Msa0656500:CDS 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG + chr4_3:65865378-65865397 Msa0656500:CDS 40.0%
TGGGAGGTTATGCATTCATT+TGG + chr4_3:65865398-65865417 Msa0656500:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG + chr4_3:65865470-65865489 Msa0656500:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG + chr4_3:65865532-65865551 Msa0656500:CDS 40.0%
GTCCTTATGTCTTTCAGCAT+TGG + chr4_3:65865637-65865656 Msa0656500:intron 40.0%
TGTCAAACATGAATGTGGCT+CGG + chr4_3:65865701-65865720 Msa0656500:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG + chr4_3:65865730-65865749 Msa0656500:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG + chr4_3:65865748-65865767 Msa0656500:CDS 40.0%
!! ATGGCTTGGTTTATGCTGTT+GGG + chr4_3:65865749-65865768 Msa0656500:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG - chr4_3:65865809-65865828 None:intergenic 40.0%
AGAAGTTGTTCTGTATGGAG+TGG + chr4_3:65866037-65866056 Msa0656500:CDS 40.0%
GTATGGAGTGGAAGAATCAA+CGG + chr4_3:65866049-65866068 Msa0656500:CDS 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG + chr4_3:65866176-65866195 Msa0656500:CDS 40.0%
CTTGTGCAGTGTAACTATCA+AGG + chr4_3:65866290-65866309 Msa0656500:CDS 40.0%
TGTAACTATCAAGGCCTGAA+AGG + chr4_3:65866299-65866318 Msa0656500:exon 40.0%
GTAACTATCAAGGCCTGAAA+GGG + chr4_3:65866300-65866319 Msa0656500:exon 40.0%
ACTGAAGACCTTGATAGAGT+TGG + chr4_3:65866337-65866356 Msa0656500:three_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG + chr4_3:65866351-65866370 Msa0656500:three_prime_UTR 40.0%
! TCTTCAAGTTTCATATCGGC+TGG - chr4_3:65864868-65864887 None:intergenic 40.0%
! GAGAAGCCATCTCTTTTGAA+AGG + chr4_3:65865116-65865135 Msa0656500:CDS 40.0%
!! AAGCCATCTCTTTTGAAAGG+TGG + chr4_3:65865119-65865138 Msa0656500:CDS 40.0%
TGACCACCTTTCAAAAGAGA+TGG - chr4_3:65865125-65865144 None:intergenic 40.0%
GATGATAGCCCTATTCTTTC+TGG + chr4_3:65865182-65865201 Msa0656500:CDS 40.0%
ATAGCTAGGAAGTTAGAACG+AGG - chr4_3:65865248-65865267 None:intergenic 40.0%
TCGTTCTAACTTCCTAGCTA+TGG + chr4_3:65865247-65865266 Msa0656500:CDS 40.0%
CGTTCTAACTTCCTAGCTAT+GGG + chr4_3:65865248-65865267 Msa0656500:CDS 40.0%
ATTCATAACCGTGCGAAAGT+TGG + chr4_3:65865313-65865332 Msa0656500:CDS 40.0%
! ACAGCTGATAGTGAAGGAAA+AGG + chr4_3:65865368-65865387 Msa0656500:CDS 40.0%
GTGAAGGAAAAGGAAGTCAT+TGG + chr4_3:65865378-65865397 Msa0656500:CDS 40.0%
TGGGAGGTTATGCATTCATT+TGG + chr4_3:65865398-65865417 Msa0656500:CDS 40.0%
! TTTGGGGTTGTGGTTCTTAA+CGG + chr4_3:65865470-65865489 Msa0656500:CDS 40.0%
!! AACTGTTTCTGTTTCAGCAG+AGG + chr4_3:65865532-65865551 Msa0656500:CDS 40.0%
GTCCTTATGTCTTTCAGCAT+TGG + chr4_3:65865637-65865656 Msa0656500:intron 40.0%
TGTCAAACATGAATGTGGCT+CGG + chr4_3:65865701-65865720 Msa0656500:CDS 40.0%
TTTGCTTGTGCAGAAGTCAA+TGG + chr4_3:65865730-65865749 Msa0656500:CDS 40.0%
!! AATGGCTTGGTTTATGCTGT+TGG + chr4_3:65865748-65865767 Msa0656500:CDS 40.0%
!! ATGGCTTGGTTTATGCTGTT+GGG + chr4_3:65865749-65865768 Msa0656500:CDS 40.0%
AGTATCCGGATCATAAACCT+CGG - chr4_3:65865809-65865828 None:intergenic 40.0%
AGAAGTTGTTCTGTATGGAG+TGG + chr4_3:65866037-65866056 Msa0656500:CDS 40.0%
GTATGGAGTGGAAGAATCAA+CGG + chr4_3:65866049-65866068 Msa0656500:CDS 40.0%
!!! GCTTTTGCTGTTTTCACTGA+AGG + chr4_3:65866176-65866195 Msa0656500:CDS 40.0%
CTTGTGCAGTGTAACTATCA+AGG + chr4_3:65866290-65866309 Msa0656500:CDS 40.0%
TGTAACTATCAAGGCCTGAA+AGG + chr4_3:65866299-65866318 Msa0656500:exon 40.0%
GTAACTATCAAGGCCTGAAA+GGG + chr4_3:65866300-65866319 Msa0656500:exon 40.0%
ACTGAAGACCTTGATAGAGT+TGG + chr4_3:65866337-65866356 Msa0656500:three_prime_UTR 40.0%
TAGAGTTGGCAATGGAGTTA+CGG + chr4_3:65866351-65866370 Msa0656500:three_prime_UTR 40.0%
CATTTGAACATGCCAAGCCT+CGG - chr4_3:65864910-65864929 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG - chr4_3:65865050-65865069 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG + chr4_3:65865132-65865151 Msa0656500:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG + chr4_3:65865251-65865270 Msa0656500:CDS 45.0%
AGGAAAAGGAAGTCATTGGG+AGG + chr4_3:65865382-65865401 Msa0656500:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG + chr4_3:65865491-65865510 Msa0656500:CDS 45.0%
ACAAACATACCTGTCGAGGT+TGG - chr4_3:65865573-65865592 None:intergenic 45.0%
TTGTGCAGAAGTCAATGGCT+TGG + chr4_3:65865735-65865754 Msa0656500:CDS 45.0%
!! TGGCTTGGTTTATGCTGTTG+GGG + chr4_3:65865750-65865769 Msa0656500:CDS 45.0%
GTTTATGCTGTTGGGGGATA+TGG + chr4_3:65865757-65865776 Msa0656500:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG + chr4_3:65865815-65865834 Msa0656500:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG - chr4_3:65865823-65865842 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG + chr4_3:65865873-65865892 Msa0656500:CDS 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG + chr4_3:65865874-65865893 Msa0656500:CDS 45.0%
! ACAACCCTGAGAAGCATAGT+TGG + chr4_3:65865962-65865981 Msa0656500:CDS 45.0%
CCATCCAACTATGCTTCTCA+GGG - chr4_3:65865969-65865988 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG - chr4_3:65865970-65865989 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG + chr4_3:65866224-65866243 Msa0656500:CDS 45.0%
TATGATCCAAATGCAGAGCC+GGG + chr4_3:65866225-65866244 Msa0656500:CDS 45.0%
CAGATGCAGTAAACCCTTTC+AGG - chr4_3:65866316-65866335 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG + chr4_3:65866343-65866362 Msa0656500:three_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG - chr4_3:65866348-65866367 None:intergenic 45.0%
CATTTGAACATGCCAAGCCT+CGG - chr4_3:65864910-65864929 None:intergenic 45.0%
TTCTTGACAGCCACAAAACC+AGG - chr4_3:65865050-65865069 None:intergenic 45.0%
TGAAAGGTGGTCATAGTGTG+AGG + chr4_3:65865132-65865151 Msa0656500:CDS 45.0%
TCTAACTTCCTAGCTATGGG+CGG + chr4_3:65865251-65865270 Msa0656500:CDS 45.0%
AGGAAAAGGAAGTCATTGGG+AGG + chr4_3:65865382-65865401 Msa0656500:CDS 45.0%
! GGAAAGCTTCTTGTTATGGC+TGG + chr4_3:65865491-65865510 Msa0656500:CDS 45.0%
ACAAACATACCTGTCGAGGT+TGG - chr4_3:65865573-65865592 None:intergenic 45.0%
TTGTGCAGAAGTCAATGGCT+TGG + chr4_3:65865735-65865754 Msa0656500:CDS 45.0%
!! TGGCTTGGTTTATGCTGTTG+GGG + chr4_3:65865750-65865769 Msa0656500:CDS 45.0%
GTTTATGCTGTTGGGGGATA+TGG + chr4_3:65865757-65865776 Msa0656500:CDS 45.0%
ATGATCCGGATACTGACAAG+TGG + chr4_3:65865815-65865834 Msa0656500:CDS 45.0%
ACTGTCCACTTGTCAGTATC+CGG - chr4_3:65865823-65865842 None:intergenic 45.0%
!! ATGCTTTGCCTGTGGATTAG+AGG + chr4_3:65865873-65865892 Msa0656500:CDS 45.0%
!! TGCTTTGCCTGTGGATTAGA+GGG + chr4_3:65865874-65865893 Msa0656500:CDS 45.0%
! ACAACCCTGAGAAGCATAGT+TGG + chr4_3:65865962-65865981 Msa0656500:CDS 45.0%
CCATCCAACTATGCTTCTCA+GGG - chr4_3:65865969-65865988 None:intergenic 45.0%
TCCATCCAACTATGCTTCTC+AGG - chr4_3:65865970-65865989 None:intergenic 45.0%
GTATGATCCAAATGCAGAGC+CGG + chr4_3:65866224-65866243 Msa0656500:CDS 45.0%
TATGATCCAAATGCAGAGCC+GGG + chr4_3:65866225-65866244 Msa0656500:CDS 45.0%
CAGATGCAGTAAACCCTTTC+AGG - chr4_3:65866316-65866335 None:intergenic 45.0%
GACCTTGATAGAGTTGGCAA+TGG + chr4_3:65866343-65866362 Msa0656500:three_prime_UTR 45.0%
CTCCATTGCCAACTCTATCA+AGG - chr4_3:65866348-65866367 None:intergenic 45.0%
GTGAAAGTTACAGTTGGCCG+AGG + chr4_3:65864890-65864909 Msa0656500:five_prime_UTR 50.0%
TGGTCATAGTGTGAGGTCTG+AGG + chr4_3:65865139-65865158 Msa0656500:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG - chr4_3:65865193-65865212 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG - chr4_3:65865194-65865213 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG - chr4_3:65865262-65865281 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG + chr4_3:65865267-65865286 Msa0656500:CDS 50.0%
ATAACCGTGCGAAAGTTGGC+TGG + chr4_3:65865317-65865336 Msa0656500:CDS 50.0%
TAACCGTGCGAAAGTTGGCT+GGG + chr4_3:65865318-65865337 Msa0656500:CDS 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG - chr4_3:65865433-65865452 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+GGG + chr4_3:65865751-65865770 Msa0656500:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG + chr4_3:65865891-65865910 Msa0656500:CDS 50.0%
GAGGGCAAGCTCTATGTGAT+GGG + chr4_3:65865892-65865911 Msa0656500:CDS 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG + chr4_3:65865899-65865918 Msa0656500:CDS 50.0%
GGAAGGTCGAGCTTCACAAT+TGG + chr4_3:65865916-65865935 Msa0656500:CDS 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG + chr4_3:65865966-65865985 Msa0656500:CDS 50.0%
ATGATCCAAATGCAGAGCCG+GGG + chr4_3:65866226-65866245 Msa0656500:CDS 50.0%
CTGCACAAGCACAAACCAGA+TGG - chr4_3:65866279-65866298 None:intergenic 50.0%
GTGAAAGTTACAGTTGGCCG+AGG + chr4_3:65864890-65864909 Msa0656500:five_prime_UTR 50.0%
TGGTCATAGTGTGAGGTCTG+AGG + chr4_3:65865139-65865158 Msa0656500:CDS 50.0%
CAGGGAGCCCAGAAAGAATA+GGG - chr4_3:65865193-65865212 None:intergenic 50.0%
TCAGGGAGCCCAGAAAGAAT+AGG - chr4_3:65865194-65865213 None:intergenic 50.0%
TACAAACACCGCCCATAGCT+AGG - chr4_3:65865262-65865281 None:intergenic 50.0%
TGGGCGGTGTTTGTAAGAGA+TGG + chr4_3:65865267-65865286 Msa0656500:CDS 50.0%
ATAACCGTGCGAAAGTTGGC+TGG + chr4_3:65865317-65865336 Msa0656500:CDS 50.0%
TAACCGTGCGAAAGTTGGCT+GGG + chr4_3:65865318-65865337 Msa0656500:CDS 50.0%
!! CAGGCATTGGTGGAAGAGAT+CGG - chr4_3:65865433-65865452 None:intergenic 50.0%
! GGCTTGGTTTATGCTGTTGG+GGG + chr4_3:65865751-65865770 Msa0656500:CDS 50.0%
AGAGGGCAAGCTCTATGTGA+TGG + chr4_3:65865891-65865910 Msa0656500:CDS 50.0%
GAGGGCAAGCTCTATGTGAT+GGG + chr4_3:65865892-65865911 Msa0656500:CDS 50.0%
!! AGCTCTATGTGATGGGTGGA+AGG + chr4_3:65865899-65865918 Msa0656500:CDS 50.0%
GGAAGGTCGAGCTTCACAAT+TGG + chr4_3:65865916-65865935 Msa0656500:CDS 50.0%
! CCCTGAGAAGCATAGTTGGA+TGG + chr4_3:65865966-65865985 Msa0656500:CDS 50.0%
ATGATCCAAATGCAGAGCCG+GGG + chr4_3:65866226-65866245 Msa0656500:CDS 50.0%
CTGCACAAGCACAAACCAGA+TGG - chr4_3:65866279-65866298 None:intergenic 50.0%
AGTTACAGTTGGCCGAGGCT+TGG + chr4_3:65864895-65864914 Msa0656500:five_prime_UTR 55.0%
TAGAACGAGGCACGAGTGCA+AGG - chr4_3:65865235-65865254 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG + chr4_3:65865328-65865347 Msa0656500:CDS 55.0%
CGATCTCTTCCACCAATGCC+TGG + chr4_3:65865431-65865450 Msa0656500:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG + chr4_3:65865438-65865457 Msa0656500:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG - chr4_3:65865443-65865462 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG + chr4_3:65865442-65865461 Msa0656500:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG + chr4_3:65865453-65865472 Msa0656500:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG + chr4_3:65865454-65865473 Msa0656500:CDS 55.0%
GTTGGGGGATATGGAGCAGA+AGG + chr4_3:65865766-65865785 Msa0656500:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG + chr4_3:65865801-65865820 Msa0656500:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG + chr4_3:65865848-65865867 Msa0656500:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG + chr4_3:65865849-65865868 Msa0656500:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG + chr4_3:65865850-65865869 Msa0656500:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG - chr4_3:65865855-65865874 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG - chr4_3:65865865-65865884 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG + chr4_3:65865865-65865884 Msa0656500:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG - chr4_3:65865884-65865903 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG + chr4_3:65865895-65865914 Msa0656500:CDS 55.0%
AACGGTACCAGTACCCCTGA+CGG + chr4_3:65866110-65866129 Msa0656500:CDS 55.0%
AACACTCGAACTCCCCGTCA+GGG - chr4_3:65866127-65866146 None:intergenic 55.0%
AGTTACAGTTGGCCGAGGCT+TGG + chr4_3:65864895-65864914 Msa0656500:five_prime_UTR 55.0%
TAGAACGAGGCACGAGTGCA+AGG - chr4_3:65865235-65865254 None:intergenic 55.0%
AAAGTTGGCTGGGCTGCTTG+AGG + chr4_3:65865328-65865347 Msa0656500:CDS 55.0%
CGATCTCTTCCACCAATGCC+TGG + chr4_3:65865431-65865450 Msa0656500:CDS 55.0%
TTCCACCAATGCCTGGTCCA+AGG + chr4_3:65865438-65865457 Msa0656500:CDS 55.0%
!! TTCCTTGGACCAGGCATTGG+TGG - chr4_3:65865443-65865462 None:intergenic 55.0%
ACCAATGCCTGGTCCAAGGA+AGG + chr4_3:65865442-65865461 Msa0656500:CDS 55.0%
GTCCAAGGAAGGCTGGGTTT+GGG + chr4_3:65865453-65865472 Msa0656500:CDS 55.0%
TCCAAGGAAGGCTGGGTTTG+GGG + chr4_3:65865454-65865473 Msa0656500:CDS 55.0%
GTTGGGGGATATGGAGCAGA+AGG + chr4_3:65865766-65865785 Msa0656500:CDS 55.0%
! CAGCGCCGAGGTTTATGATC+CGG + chr4_3:65865801-65865820 Msa0656500:CDS 55.0%
AGAGCCTACGTCGTCCAAGA+TGG + chr4_3:65865848-65865867 Msa0656500:CDS 55.0%
GAGCCTACGTCGTCCAAGAT+GGG + chr4_3:65865849-65865868 Msa0656500:CDS 55.0%
AGCCTACGTCGTCCAAGATG+GGG + chr4_3:65865850-65865869 Msa0656500:CDS 55.0%
ATCCCCATCTTGGACGACGT+AGG - chr4_3:65865855-65865874 None:intergenic 55.0%
! CAGGCAAAGCATCCCCATCT+TGG - chr4_3:65865865-65865884 None:intergenic 55.0%
AGATGGGGATGCTTTGCCTG+TGG + chr4_3:65865865-65865884 Msa0656500:CDS 55.0%
GAGCTTGCCCTCTAATCCAC+AGG - chr4_3:65865884-65865903 None:intergenic 55.0%
! GGCAAGCTCTATGTGATGGG+TGG + chr4_3:65865895-65865914 Msa0656500:CDS 55.0%
AACGGTACCAGTACCCCTGA+CGG + chr4_3:65866110-65866129 Msa0656500:CDS 55.0%
AACACTCGAACTCCCCGTCA+GGG - chr4_3:65866127-65866146 None:intergenic 55.0%
CAGCCCAGCCAACTTTCGCA+CGG - chr4_3:65865324-65865343 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG - chr4_3:65865446-65865465 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG + chr4_3:65865446-65865465 Msa0656500:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG + chr4_3:65865447-65865466 Msa0656500:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG - chr4_3:65865452-65865471 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG + chr4_3:65865452-65865471 Msa0656500:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG - chr4_3:65865458-65865477 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG + chr4_3:65865460-65865479 Msa0656500:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG - chr4_3:65865803-65865822 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG + chr4_3:65866111-65866130 Msa0656500:CDS 60.0%
ACACTCGAACTCCCCGTCAG+GGG - chr4_3:65866126-65866145 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG - chr4_3:65866128-65866147 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG + chr4_3:65866126-65866145 Msa0656500:CDS 60.0%
TCACACCCCGGCTCTGCATT+TGG - chr4_3:65866234-65866253 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG - chr4_3:65866246-65866265 None:intergenic 60.0%
CAGCCCAGCCAACTTTCGCA+CGG - chr4_3:65865324-65865343 None:intergenic 60.0%
GCCTTCCTTGGACCAGGCAT+TGG - chr4_3:65865446-65865465 None:intergenic 60.0%
ATGCCTGGTCCAAGGAAGGC+TGG + chr4_3:65865446-65865465 Msa0656500:CDS 60.0%
TGCCTGGTCCAAGGAAGGCT+GGG + chr4_3:65865447-65865466 Msa0656500:CDS 60.0%
AACCCAGCCTTCCTTGGACC+AGG - chr4_3:65865452-65865471 None:intergenic 60.0%
GGTCCAAGGAAGGCTGGGTT+TGG + chr4_3:65865452-65865471 Msa0656500:CDS 60.0%
ACCCCAAACCCAGCCTTCCT+TGG - chr4_3:65865458-65865477 None:intergenic 60.0%
! GAAGGCTGGGTTTGGGGTTG+TGG + chr4_3:65865460-65865479 Msa0656500:CDS 60.0%
CGGATCATAAACCTCGGCGC+TGG - chr4_3:65865803-65865822 None:intergenic 60.0%
ACGGTACCAGTACCCCTGAC+GGG + chr4_3:65866111-65866130 Msa0656500:CDS 60.0%
ACACTCGAACTCCCCGTCAG+GGG - chr4_3:65866126-65866145 None:intergenic 60.0%
CAACACTCGAACTCCCCGTC+AGG - chr4_3:65866128-65866147 None:intergenic 60.0%
CTGACGGGGAGTTCGAGTGT+TGG + chr4_3:65866126-65866145 Msa0656500:CDS 60.0%
TCACACCCCGGCTCTGCATT+TGG - chr4_3:65866234-65866253 None:intergenic 60.0%
GTAGTTCCCCACTCACACCC+CGG - chr4_3:65866246-65866265 None:intergenic 60.0%
TGGCTGGGCTGCTTGAGGAG+TGG + chr4_3:65865333-65865352 Msa0656500:CDS 65.0%
TGACAGTCTCTCCAGCGCCG+AGG + chr4_3:65865789-65865808 Msa0656500:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG + chr4_3:65866112-65866131 Msa0656500:CDS 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG - chr4_3:65866120-65866139 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG + chr4_3:65866235-65866254 Msa0656500:CDS 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG + chr4_3:65866236-65866255 Msa0656500:CDS 65.0%
TGGCTGGGCTGCTTGAGGAG+TGG + chr4_3:65865333-65865352 Msa0656500:CDS 65.0%
TGACAGTCTCTCCAGCGCCG+AGG + chr4_3:65865789-65865808 Msa0656500:CDS 65.0%
CGGTACCAGTACCCCTGACG+GGG + chr4_3:65866112-65866131 Msa0656500:CDS 65.0%
! GAACTCCCCGTCAGGGGTAC+TGG - chr4_3:65866120-65866139 None:intergenic 65.0%
ATGCAGAGCCGGGGTGTGAG+TGG + chr4_3:65866235-65866254 Msa0656500:CDS 65.0%
TGCAGAGCCGGGGTGTGAGT+GGG + chr4_3:65866236-65866255 Msa0656500:CDS 65.0%
GCAGAGCCGGGGTGTGAGTG+GGG + chr4_3:65866237-65866256 Msa0656500:CDS 70.0%
GCAGAGCCGGGGTGTGAGTG+GGG + chr4_3:65866237-65866256 Msa0656500:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65864437 65866490 65864437 ID=Msa0656500;Name=Msa0656500
chr4_3 mRNA 65864437 65866490 65864437 ID=Msa0656500-mRNA-1;Parent=Msa0656500;Name=Msa0656500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=607|1|1|1|1|1|2|173|388
chr4_3 exon 65864437 65865582 65864437 ID=Msa0656500-mRNA-1:exon:18726;Parent=Msa0656500-mRNA-1
chr4_3 exon 65865690 65866490 65865690 ID=Msa0656500-mRNA-1:exon:18727;Parent=Msa0656500-mRNA-1
chr4_3 five_prime_UTR 65864437 65865043 65864437 ID=Msa0656500-mRNA-1:five_prime_utr;Parent=Msa0656500-mRNA-1
chr4_3 CDS 65865044 65865582 65865044 ID=Msa0656500-mRNA-1:cds;Parent=Msa0656500-mRNA-1
chr4_3 CDS 65865690 65866317 65865690 ID=Msa0656500-mRNA-1:cds;Parent=Msa0656500-mRNA-1
chr4_3 three_prime_UTR 65866318 65866490 65866318 ID=Msa0656500-mRNA-1:three_prime_utr;Parent=Msa0656500-mRNA-1
Gene Sequence

>Msa0656500

ATGCCTGGTTTTGTGGCTGTCAAGAAGAGATTTTCAGAGAAAAATGTGTGTTTTTCCAATATGGTGAATCAAGAGAAGCCATCTCTTTTGAAAGGTGGTCATAGTGTGAGGTCTGAGGCTGTAGATGATGTTATTGATGATGATAGCCCTATTCTTTCTGGGCTCCCTGATGATGTTTCAAAGCATTGCCTTGCACTCGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGTGTTTGTAAGAGATGGAAATGCTTTATTCAAAGCAAGGAATTCATAACCGTGCGAAAGTTGGCTGGGCTGCTTGAGGAGTGGCTTTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGCATTCATTTGGTCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAAGGAAGGCTGGGTTTGGGGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAACTGATGAAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCCAACCTCGACAGTTGGATCAGATTGTCAAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGGGGATATGGAGCAGAAGGTGACAGTCTCTCCAGCGCCGAGGTTTATGATCCGGATACTGACAAGTGGACAGTGATTGAGAGCCTACGTCGTCCAAGATGGGGATGCTTTGCCTGTGGATTAGAGGGCAAGCTCTATGTGATGGGTGGAAGGTCGAGCTTCACAATTGGAAATTCTAAGTTTGTTGATGTTTACAACCCTGAGAAGCATAGTTGGATGGAGATGAAAAATGGGTGTGTTATGGTAACTGCTCATGCAGTACTAGAAAAGAAGTTGTTCTGTATGGAGTGGAAGAATCAACGGAAGCTATCGATATTCAATCCAGATGATAATTCATGGAAAACGGTACCAGTACCCCTGACGGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCACTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGAGCCGGGGTGTGAGTGGGGAACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA
Protein sequence

>Msa0656500

MPGFVAVKKRFSEKNVCFSNMVNQEKPSLLKGGHSVRSEAVDDVIDDDSPILSGLPDDVSKHCLALVPRSNFLAMGGVCKRWKCFIQSKEFITVRKLAGLLEEWLYILTADSEGKGSHWEVMHSFGHNRRSLPPMPGPRKAGFGVVVLNGKLLVMAGYSSTDETVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTVIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKFVDVYNPEKHSWMEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDNSWKTVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAEPGCEWGTTDIKPSGLCLCSVTIKA*