AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563390 MtrunA17_Chr4g0045091 99.024 410 4 0 1 410 1 410 0.0 836
Msa0563390 MtrunA17_Chr3g0133761 48.768 406 198 6 11 410 5 406 6.59e-130 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563390 AT2G15695.1 54.374 423 168 7 9 410 2 420 4.87e-155 444
Msa0563390 AT5G44250.1 46.305 406 205 8 11 410 5 403 5.10e-120 355
Msa0563390 AT5G44250.2 45.955 309 156 7 106 410 1 302 5.61e-86 264

Find 118 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTGTCTTCAGAATTT+TGG 0.059999 4_1:+63769295 Msa0563390:intron
CTAGATGTTACAAGTGATTT+TGG 0.148183 4_1:+63769028 Msa0563390:CDS
TTGTTTAGGAACTGTGTTTC+TGG 0.150597 4_1:+63768983 Msa0563390:CDS
AGCTGCTGTGAGCCATTTAT+TGG 0.192871 4_1:+63769572 Msa0563390:CDS
AATTCACGTGTTTCGCTTAC+TGG 0.198836 4_1:+63766450 Msa0563390:five_prime_UTR
CGTTGACCTTTACTCCTCTT+TGG 0.204468 4_1:+63766624 Msa0563390:CDS
CCTAAAACTAAAGGCCAATT+TGG 0.216009 4_1:+63766209 Msa0563390:five_prime_UTR
CTGTCTGTACAAATTATTTC+AGG 0.229050 4_1:+63768706 Msa0563390:CDS
TGATCACCTGTTTATATCTA+TGG 0.230467 4_1:-63770258 None:intergenic
TCCCAACCTTCAACATTCTT+TGG 0.240471 4_1:-63769912 None:intergenic
ATGCGTTTAATTCCTCTAAA+AGG 0.247530 4_1:-63769981 None:intergenic
GATATGAATATGATAGATTT+TGG 0.260174 4_1:+63770105 Msa0563390:three_prime_UTR
ACTTACTGTTAGAAATAAAC+TGG 0.276365 4_1:+63770323 Msa0563390:three_prime_UTR
TCCTTTGTCTCGTAAAATTC+AGG 0.280019 4_1:-63770081 None:intergenic
TCTGGACATATATATGATTC+TGG 0.283472 4_1:+63769001 Msa0563390:CDS
CGCTGTGAGCGCTGATGCTT+GGG 0.291912 4_1:-63769857 None:intergenic
AACAACAATGATAGAGAATC+TGG 0.310572 4_1:+63769786 Msa0563390:CDS
AGTTCCACAAAACCTGTTAC+AGG 0.311517 4_1:+63766597 Msa0563390:CDS
ATATATTTGTGGGAATAAAT+AGG 0.316543 4_1:+63770489 Msa0563390:three_prime_UTR
GACCATCAAAGCTTGTTTCT+TGG 0.325748 4_1:+63769092 Msa0563390:CDS
GTTGACCTTTACTCCTCTTT+GGG 0.336410 4_1:+63766625 Msa0563390:CDS
GGTAATATAATTGTTTGAAA+TGG 0.337307 4_1:+63770376 Msa0563390:three_prime_UTR
GGTCAACGAATTCCTGTAAC+AGG 0.339829 4_1:-63766609 None:intergenic
AATAAGAATGAATAATAAAA+TGG 0.342130 4_1:-63766267 None:intergenic
ACACGGCCTTCTCCAATAAA+TGG 0.355167 4_1:-63769584 None:intergenic
AGCATGACTGTCAATTGTTT+AGG 0.377794 4_1:+63768969 Msa0563390:intron
ATCAGCGCTCACAGCGTCCT+TGG 0.388256 4_1:+63769864 Msa0563390:CDS
GAGTTTGACAGAAGTTGATA+TGG 0.397401 4_1:+63770607 Msa0563390:three_prime_UTR
ACCATCAAAGCTTGTTTCTT+GGG 0.398334 4_1:+63769093 Msa0563390:CDS
TCCGAACATAAAATGAGAAA+TGG 0.399424 4_1:-63769322 None:intergenic
GTAGCAAAGTCTGTTGCATC+TGG 0.399698 4_1:+63769115 Msa0563390:CDS
ACCTTTACTCCTCTTTGGGC+TGG 0.400975 4_1:+63766629 Msa0563390:CDS
TAGACACTGGATATCCAAAT+TGG 0.403204 4_1:-63766223 None:intergenic
ACCCAAGAAACAAGCTTTGA+TGG 0.403500 4_1:-63769094 None:intergenic
GGCTCACAGCAGCTCTGTAT+TGG 0.405682 4_1:-63769563 None:intergenic
AATCTCAATCAGCTGATCAT+TGG 0.409867 4_1:+63769167 Msa0563390:CDS
GCCGGCCATTGTATCGTATC+TGG 0.410512 4_1:+63770139 Msa0563390:three_prime_UTR
CGAGAAAGAACTGGTATTGA+TGG 0.422478 4_1:+63769636 Msa0563390:CDS
GTAAGAAAAGCAGAATATTC+CGG 0.423883 4_1:+63770556 Msa0563390:three_prime_UTR
GAATCGTTGTAATCTTTGCT+TGG 0.425804 4_1:+63766569 Msa0563390:CDS
AGAAACAAGCTTTGATGGTC+CGG 0.428964 4_1:-63769089 None:intergenic
ATCGCTATGCGTGGAGTTGA+AGG 0.430025 4_1:+63766487 Msa0563390:exon
AATCGTTGTAATCTTTGCTT+GGG 0.431280 4_1:+63766570 Msa0563390:CDS
TGATTGCCATAGATATAAAC+AGG 0.433136 4_1:+63770252 Msa0563390:three_prime_UTR
ACGCTGTGAGCGCTGATGCT+TGG 0.436180 4_1:-63769858 None:intergenic
GTTGAATGTGAAGATTGATA+TGG 0.436213 4_1:+63770201 Msa0563390:three_prime_UTR
TCAGCGCTCACAGCGTCCTT+GGG 0.444207 4_1:+63769865 Msa0563390:CDS
CTGAAATAATTTGTACAGAC+AGG 0.451620 4_1:-63768705 None:intergenic
TACGAGGCGGTAACATCTAC+TGG 0.455529 4_1:+63766518 Msa0563390:CDS
TGAGGAAAGTGCGGTGCCAT+TGG 0.467523 4_1:+63768316 Msa0563390:CDS
AATTAATTGCAACTTTCTGC+AGG 0.468910 4_1:-63769692 None:intergenic
ATAATTGTTGTCACTCAGAA+AGG 0.471723 4_1:+63770287 Msa0563390:three_prime_UTR
TGGGAAGCTAGGAGCACAAA+CGG 0.476633 4_1:-63769838 None:intergenic
TTGTGTCTGTATATATTTGT+GGG 0.477753 4_1:+63770479 Msa0563390:three_prime_UTR
TTGTTATGTCCTGCTGAACT+AGG 0.479809 4_1:-63769768 None:intergenic
TCCAAAGAATGTTGAAGGTT+GGG 0.486461 4_1:+63769911 Msa0563390:CDS
AAAGTCTGTTGCATCTGGTT+TGG 0.487705 4_1:+63769120 Msa0563390:CDS
GGTTGCGATGATTCAACTAT+CGG 0.504787 4_1:+63770171 Msa0563390:three_prime_UTR
TGTGTTCCAAAGAATGTTGA+AGG 0.505151 4_1:+63769906 Msa0563390:CDS
TCTTCTTTCTGTTCGTCCCG+TGG 0.505476 4_1:-63769813 None:intergenic
TAATTGTTGTCACTCAGAAA+GGG 0.506377 4_1:+63770288 Msa0563390:three_prime_UTR
TTTAGAGGAATTAAACGCAT+TGG 0.506775 4_1:+63769984 Msa0563390:CDS
ATTCACGTGTTTCGCTTACT+GGG 0.507630 4_1:+63766451 Msa0563390:five_prime_UTR
AATAATAAAATGGTGGGTGA+TGG 0.512020 4_1:-63766257 None:intergenic
ACAGCAGCTCTGTATTGGAT+TGG 0.516355 4_1:-63769558 None:intergenic
ATACTTGAACGAGAAAGAAC+TGG 0.518031 4_1:+63769627 Msa0563390:CDS
GAAACAAGCTTTGATGGTCC+GGG 0.522040 4_1:-63769088 None:intergenic
AAATCACTTGTAACATCTAG+TGG 0.525521 4_1:-63769025 None:intergenic
TCCAGCCCAAAGAGGAGTAA+AGG 0.525870 4_1:-63766630 None:intergenic
ATGCACAGCTCCACTCAACT+TGG 0.526381 4_1:+63768852 Msa0563390:CDS
TCAATCAGCTGATCATTGGC+AGG 0.527299 4_1:+63769171 Msa0563390:CDS
AAGAATGAATAATAAAATGG+TGG 0.527859 4_1:-63766264 None:intergenic
TTTGGGTTACGCAGGTGCTA+AGG 0.530778 4_1:+63768633 Msa0563390:intron
GCGCTGATGCTTGGGAAGCT+AGG 0.531134 4_1:-63769849 None:intergenic
TTTGTGTCTGTATATATTTG+TGG 0.536831 4_1:+63770478 Msa0563390:three_prime_UTR
AACTGGGTGATGTTTGACTA+AGG 0.537810 4_1:+63770340 Msa0563390:three_prime_UTR
TTACGCAGGTGCTAAGGACT+AGG 0.538684 4_1:+63768639 Msa0563390:intron
TCAAACAATTATATTACCTA+CGG 0.540563 4_1:-63770371 None:intergenic
CTCTTCATCCAGGTTCAATG+AGG 0.542042 4_1:+63768298 Msa0563390:intron
CCTTCCATTGCAAAAGTGCC+CGG 0.550129 4_1:+63769070 Msa0563390:CDS
ACACGAATCCCTAAAACTAA+AGG 0.551875 4_1:+63766200 Msa0563390:five_prime_UTR
GTTGCGATGATTCAACTATC+GGG 0.555172 4_1:+63770172 Msa0563390:three_prime_UTR
TTCCAAAGAATGTTGAAGGT+TGG 0.557791 4_1:+63769910 Msa0563390:CDS
TGTGAGCCATTTATTGGAGA+AGG 0.562192 4_1:+63769578 Msa0563390:CDS
GCCAGATACGATACAATGGC+CGG 0.570704 4_1:-63770140 None:intergenic
AATTGCATTACCAAGTTGAG+TGG 0.572964 4_1:-63768862 None:intergenic
GGGAAGCTAGGAGCACAAAC+GGG 0.575953 4_1:-63769837 None:intergenic
GAATAAATAGGCCATGTTTG+AGG 0.576240 4_1:+63770501 Msa0563390:three_prime_UTR
AGAATGAATAATAAAATGGT+GGG 0.578892 4_1:-63766263 None:intergenic
CAATCAGAAAATAACAGTGA+TGG 0.582559 4_1:-63766375 None:intergenic
ATAGAGAATCTGGGATTCCA+CGG 0.590079 4_1:+63769796 Msa0563390:CDS
TTAAACGCATTGGTCGCTCT+AGG 0.593892 4_1:+63769994 Msa0563390:CDS
ACAGAAGTTGATATGGCGTA+TGG 0.600105 4_1:+63770614 Msa0563390:three_prime_UTR
AAGAGAATTCCAGCCCAAAG+AGG 0.601178 4_1:-63766638 None:intergenic
GAAGCAAACACAACAGGACA+TGG 0.602944 4_1:-63768662 None:intergenic
TTGTCACTCAGAAAGGGGAG+TGG 0.607190 4_1:+63770294 Msa0563390:three_prime_UTR
ATACAAATGCAGCTTAGTGA+AGG 0.607255 4_1:+63768826 Msa0563390:intron
ACGAGGCGGTAACATCTACT+GGG 0.608927 4_1:+63766519 Msa0563390:CDS
AAACACGACACTGATTTCAA+AGG 0.610001 4_1:+63766547 Msa0563390:CDS
ACAACAATGATAGAGAATCT+GGG 0.610595 4_1:+63769787 Msa0563390:CDS
AATTGTTGTCACTCAGAAAG+GGG 0.610604 4_1:+63770289 Msa0563390:three_prime_UTR
GTTGAAGGCTGTGCCGTACG+AGG 0.611614 4_1:+63766502 Msa0563390:CDS
ATAATAAAATGGTGGGTGAT+GGG 0.612121 4_1:-63766256 None:intergenic
TCTCATATCATCGCTATGCG+TGG 0.615765 4_1:+63766478 Msa0563390:exon
GTAGATGTTACCGCCTCGTA+CGG 0.628127 4_1:-63766515 None:intergenic
TTTGTGGGAATCGGAATGGG+AGG 0.631152 4_1:+63769946 Msa0563390:CDS
TAGAGAATCTGGGATTCCAC+GGG 0.635772 4_1:+63769797 Msa0563390:CDS
AATCAAACAAAGTAAAACAC+CGG 0.640359 4_1:-63770575 None:intergenic
CTTACTGTTAGAAATAAACT+GGG 0.641712 4_1:+63770324 Msa0563390:three_prime_UTR
TATCGTATCTGGCAGTGCAA+TGG 0.652319 4_1:+63770150 Msa0563390:three_prime_UTR
CTGAGAAGCTCATCTCACGT+TGG 0.660450 4_1:+63769430 Msa0563390:CDS
GAAGGCTGTGCCGTACGAGG+CGG 0.663173 4_1:+63766505 Msa0563390:CDS
CACTGCCAGATACGATACAA+TGG 0.668067 4_1:-63770144 None:intergenic
CAGGTTCAATGAGGAAAGTG+CGG 0.674947 4_1:+63768307 Msa0563390:intron
TGGAAGGGTGTAGAGAAAAG+CGG 0.685152 4_1:-63769054 None:intergenic
GGGTGATGCTGAGTAGACAC+TGG 0.688398 4_1:-63766236 None:intergenic
GACTAAGGTAACTACTCCGT+AGG 0.699277 4_1:+63770355 Msa0563390:three_prime_UTR
CGAGGCGGTAACATCTACTG+GGG 0.743069 4_1:+63766520 Msa0563390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTATTTTTA+TGG - chr4_1:63766402-63766421 None:intergenic 0.0%
!! AATAAGAATGAATAATAAAA+TGG - chr4_1:63766270-63766289 None:intergenic 10.0%
!!! AATCTTTGTTTAGTAATTTT+TGG + chr4_1:63766852-63766871 Msa0563390:intron 15.0%
!! TTGTCAATTTACAATTAATT+AGG + chr4_1:63768415-63768434 Msa0563390:intron 15.0%
!! AGAATGAATAATAAAATGGT+GGG - chr4_1:63766266-63766285 None:intergenic 20.0%
!! AAGAATGAATAATAAAATGG+TGG - chr4_1:63766267-63766286 None:intergenic 20.0%
!!! CATTTTTTTTTCAATTTCGT+TGG + chr4_1:63766715-63766734 Msa0563390:intron 20.0%
!! AATAGAATTATTGGATTTAG+AGG + chr4_1:63766744-63766763 Msa0563390:intron 20.0%
!!! AGTATAATCATGTATGATTT+TGG + chr4_1:63766883-63766902 Msa0563390:intron 20.0%
!!! CGATCAGAATTATTATATTT+TGG + chr4_1:63766942-63766961 Msa0563390:intron 20.0%
!!! TCAGAATTATTATATTTTGG+AGG + chr4_1:63766945-63766964 Msa0563390:intron 20.0%
!! ACTTGTGAAATTAAGAATAT+GGG + chr4_1:63767369-63767388 Msa0563390:intron 20.0%
!!! GATTTCATTTTTATTCCTAT+AGG + chr4_1:63767504-63767523 Msa0563390:intron 20.0%
!!! TAATGATATTTAGAATGACA+AGG + chr4_1:63767653-63767672 Msa0563390:intron 20.0%
!!! AATATTTTTAGAGTTGGTTA+GGG - chr4_1:63767887-63767906 None:intergenic 20.0%
!!! ATTCTGAATATTTTTAGAGT+TGG - chr4_1:63767893-63767912 None:intergenic 20.0%
!!! ACACGTTATTTTTTTGAATA+AGG + chr4_1:63768194-63768213 Msa0563390:intron 20.0%
!! TTCATACCAAAGATAAAAAT+TGG - chr4_1:63768745-63768764 None:intergenic 20.0%
!! TGAATTAATAAATTCCACAA+TGG - chr4_1:63768936-63768955 None:intergenic 20.0%
!! AAAAAATAAAAACCGAAACA+TGG - chr4_1:63769251-63769270 None:intergenic 20.0%
!! TAGTTATTATTATCTGATTC+AGG + chr4_1:63769519-63769538 Msa0563390:intron 20.0%
!!! GATATGAATATGATAGATTT+TGG + chr4_1:63770105-63770124 Msa0563390:three_prime_UTR 20.0%
!! TCAAACAATTATATTACCTA+CGG - chr4_1:63770374-63770393 None:intergenic 20.0%
!! GGTAATATAATTGTTTGAAA+TGG + chr4_1:63770376-63770395 Msa0563390:three_prime_UTR 20.0%
!! ATATATTTGTGGGAATAAAT+AGG + chr4_1:63770489-63770508 Msa0563390:three_prime_UTR 20.0%
! AATCCAATAATTCTATTCCA+TGG - chr4_1:63766741-63766760 None:intergenic 25.0%
! AATTTGCGAAGTTAATAGAT+AGG + chr4_1:63767218-63767237 Msa0563390:intron 25.0%
! CTTATTCTATTCTCAACAAA+TGG - chr4_1:63767297-63767316 None:intergenic 25.0%
! AATAAGTTACTCCAAAGATT+GGG + chr4_1:63767311-63767330 Msa0563390:intron 25.0%
! GACTTGTGAAATTAAGAATA+TGG + chr4_1:63767368-63767387 Msa0563390:intron 25.0%
!!! ATATTTTTAGAGTTGGTTAG+GGG - chr4_1:63767886-63767905 None:intergenic 25.0%
!!! GAATATTTTTAGAGTTGGTT+AGG - chr4_1:63767888-63767907 None:intergenic 25.0%
! TAACTTACAAGTATACTGAT+AGG - chr4_1:63768086-63768105 None:intergenic 25.0%
! GTATTTGTAAGAACAGATTT+AGG - chr4_1:63768132-63768151 None:intergenic 25.0%
! TCAAAAACATAAAATGCCAA+TGG - chr4_1:63768335-63768354 None:intergenic 25.0%
!!! TGTTTTTGATGAACTTATTG+AGG + chr4_1:63768346-63768365 Msa0563390:CDS 25.0%
!!! CAATAGAAGAAACTTTTTCT+TGG + chr4_1:63768478-63768497 Msa0563390:intron 25.0%
!! ACTTGTTAAGAAATCAAAAG+AGG - chr4_1:63768572-63768591 None:intergenic 25.0%
! TTTAAGTGAAAAGATTGCTT+TGG + chr4_1:63768615-63768634 Msa0563390:intron 25.0%
! TTAAGTGAAAAGATTGCTTT+GGG + chr4_1:63768616-63768635 Msa0563390:intron 25.0%
!! AGTCATCCAATTTTTATCTT+TGG + chr4_1:63768736-63768755 Msa0563390:intron 25.0%
! GTATGGAAAGTAATTATAGT+AGG - chr4_1:63768810-63768829 None:intergenic 25.0%
!! ATTGTTGTCTTCAGAATTTT+GGG + chr4_1:63769296-63769315 Msa0563390:intron 25.0%
!! TCCATTTCTCATTTTATGTT+CGG + chr4_1:63769321-63769340 Msa0563390:CDS 25.0%
! ACTTACTGTTAGAAATAAAC+TGG + chr4_1:63770323-63770342 Msa0563390:three_prime_UTR 25.0%
! CTTACTGTTAGAAATAAACT+GGG + chr4_1:63770324-63770343 Msa0563390:three_prime_UTR 25.0%
!! TTTTCTTTTTGACAATTCTG+AGG + chr4_1:63770425-63770444 Msa0563390:three_prime_UTR 25.0%
! TTTGTGTCTGTATATATTTG+TGG + chr4_1:63770478-63770497 Msa0563390:three_prime_UTR 25.0%
! TTGTGTCTGTATATATTTGT+GGG + chr4_1:63770479-63770498 Msa0563390:three_prime_UTR 25.0%
! AATCAAACAAAGTAAAACAC+CGG - chr4_1:63770578-63770597 None:intergenic 25.0%
!!! CAAATTGGCCTTTAGTTTTA+GGG - chr4_1:63766211-63766230 None:intergenic 30.0%
!! ATAATAAAATGGTGGGTGAT+GGG - chr4_1:63766259-63766278 None:intergenic 30.0%
!! AATAATAAAATGGTGGGTGA+TGG - chr4_1:63766260-63766279 None:intergenic 30.0%
!!! TAACAGTGATGGTTTTGAAT+CGG - chr4_1:63766367-63766386 None:intergenic 30.0%
CAATCAGAAAATAACAGTGA+TGG - chr4_1:63766378-63766397 None:intergenic 30.0%
AATCGTTGTAATCTTTGCTT+GGG + chr4_1:63766570-63766589 Msa0563390:CDS 30.0%
!! TTTAGAGGTTGATAGATTGA+TGG + chr4_1:63766759-63766778 Msa0563390:intron 30.0%
!! TTAGAGGTTGATAGATTGAT+GGG + chr4_1:63766760-63766779 Msa0563390:intron 30.0%
! ATGTTGTGTACTTAGTTCTT+TGG + chr4_1:63766914-63766933 Msa0563390:intron 30.0%
!! TCCTTCTAGTTAAGTGTTTT+TGG + chr4_1:63766977-63766996 Msa0563390:intron 30.0%
!! CCTTCTAGTTAAGTGTTTTT+GGG + chr4_1:63766978-63766997 Msa0563390:intron 30.0%
TATAACCATTCCAAATGGTT+AGG - chr4_1:63767062-63767081 None:intergenic 30.0%
TATAGCAACAAAAACTACCT+TGG + chr4_1:63767078-63767097 Msa0563390:intron 30.0%
AGACAACTAATGCTAAGAAA+AGG - chr4_1:63767170-63767189 None:intergenic 30.0%
! TTTTCTTAGCATTAGTTGTC+TGG + chr4_1:63767169-63767188 Msa0563390:intron 30.0%
AGAAAGTAGAAACTATATGC+TGG + chr4_1:63767245-63767264 Msa0563390:intron 30.0%
GAATAAGTTACTCCAAAGAT+TGG + chr4_1:63767310-63767329 Msa0563390:intron 30.0%
GTGAAATTAAGAATATGGGT+AGG + chr4_1:63767373-63767392 Msa0563390:intron 30.0%
AATTAAGAATATGGGTAGGT+TGG + chr4_1:63767377-63767396 Msa0563390:intron 30.0%
! CAAGATTCAACGCTATATTT+TGG - chr4_1:63767440-63767459 None:intergenic 30.0%
TGTTTAGTTGCTTCAATTTC+TGG + chr4_1:63767556-63767575 Msa0563390:intron 30.0%
ATATACTAATATGCTGTTGC+GGG - chr4_1:63767703-63767722 None:intergenic 30.0%
CATATACTAATATGCTGTTG+CGG - chr4_1:63767704-63767723 None:intergenic 30.0%
!!! TCCTTTTTTATTTTCCACCA+CGG - chr4_1:63767797-63767816 None:intergenic 30.0%
TGGTGGAAAATAAAAAAGGA+AGG + chr4_1:63767797-63767816 Msa0563390:intron 30.0%
GGTGGAAAATAAAAAAGGAA+GGG + chr4_1:63767798-63767817 Msa0563390:intron 30.0%
CTTGTAAGTTATATGTAGCT+TGG + chr4_1:63768095-63768114 Msa0563390:intron 30.0%
ATAACCACCTAAGTATCTAT+TGG + chr4_1:63768169-63768188 Msa0563390:intron 30.0%
AGGTGAGCACAAATTTAATA+CGG - chr4_1:63768226-63768245 None:intergenic 30.0%
! CTGAAATAATTTGTACAGAC+AGG - chr4_1:63768708-63768727 None:intergenic 30.0%
CTGTCTGTACAAATTATTTC+AGG + chr4_1:63768706-63768725 Msa0563390:CDS 30.0%
! TTGAAGTTGTGTATGTCTTT+TGG + chr4_1:63768774-63768793 Msa0563390:intron 30.0%
! TGAAGTTGTGTATGTCTTTT+GGG + chr4_1:63768775-63768794 Msa0563390:intron 30.0%
TCTGGACATATATATGATTC+TGG + chr4_1:63769001-63769020 Msa0563390:CDS 30.0%
AAATCACTTGTAACATCTAG+TGG - chr4_1:63769028-63769047 None:intergenic 30.0%
! CTAGATGTTACAAGTGATTT+TGG + chr4_1:63769028-63769047 Msa0563390:CDS 30.0%
CTGAAGACAACAATGAAATT+AGG - chr4_1:63769290-63769309 None:intergenic 30.0%
! CATTGTTGTCTTCAGAATTT+TGG + chr4_1:63769295-63769314 Msa0563390:intron 30.0%
! TTGTTGTCTTCAGAATTTTG+GGG + chr4_1:63769297-63769316 Msa0563390:intron 30.0%
TCCGAACATAAAATGAGAAA+TGG - chr4_1:63769325-63769344 None:intergenic 30.0%
ACCCATGTTAAATTATGTTC+TGG + chr4_1:63769463-63769482 Msa0563390:intron 30.0%
GCCAGAACATAATTTAACAT+GGG - chr4_1:63769467-63769486 None:intergenic 30.0%
TGCCAGAACATAATTTAACA+TGG - chr4_1:63769468-63769487 None:intergenic 30.0%
AATTAATTGCAACTTTCTGC+AGG - chr4_1:63769695-63769714 None:intergenic 30.0%
AACAACAATGATAGAGAATC+TGG + chr4_1:63769786-63769805 Msa0563390:CDS 30.0%
ACAACAATGATAGAGAATCT+GGG + chr4_1:63769787-63769806 Msa0563390:CDS 30.0%
! ATGTGAAATTTTGTGGGAAT+CGG + chr4_1:63769937-63769956 Msa0563390:CDS 30.0%
ATGCGTTTAATTCCTCTAAA+AGG - chr4_1:63769984-63770003 None:intergenic 30.0%
TTTAGAGGAATTAAACGCAT+TGG + chr4_1:63769984-63770003 Msa0563390:CDS 30.0%
GTTGAATGTGAAGATTGATA+TGG + chr4_1:63770201-63770220 Msa0563390:three_prime_UTR 30.0%
TGATTGCCATAGATATAAAC+AGG + chr4_1:63770252-63770271 Msa0563390:three_prime_UTR 30.0%
TGATCACCTGTTTATATCTA+TGG - chr4_1:63770261-63770280 None:intergenic 30.0%
ATAATTGTTGTCACTCAGAA+AGG + chr4_1:63770287-63770306 Msa0563390:three_prime_UTR 30.0%
TAATTGTTGTCACTCAGAAA+GGG + chr4_1:63770288-63770307 Msa0563390:three_prime_UTR 30.0%
AAATGGAAAAAGATGTACTG+AGG + chr4_1:63770393-63770412 Msa0563390:three_prime_UTR 30.0%
!!! CAATTTTTTAGCCTCAAACA+TGG - chr4_1:63770515-63770534 None:intergenic 30.0%
GTAAGAAAAGCAGAATATTC+CGG + chr4_1:63770556-63770575 Msa0563390:three_prime_UTR 30.0%
ACACGAATCCCTAAAACTAA+AGG + chr4_1:63766200-63766219 Msa0563390:five_prime_UTR 35.0%
!!! CCAAATTGGCCTTTAGTTTT+AGG - chr4_1:63766212-63766231 None:intergenic 35.0%
CCTAAAACTAAAGGCCAATT+TGG + chr4_1:63766209-63766228 Msa0563390:five_prime_UTR 35.0%
TAGACACTGGATATCCAAAT+TGG - chr4_1:63766226-63766245 None:intergenic 35.0%
!! AAACACGACACTGATTTCAA+AGG + chr4_1:63766547-63766566 Msa0563390:CDS 35.0%
GAATCGTTGTAATCTTTGCT+TGG + chr4_1:63766569-63766588 Msa0563390:CDS 35.0%
! AATTCCTGTAACAGGTTTTG+TGG - chr4_1:63766604-63766623 None:intergenic 35.0%
CTAGAAAAGAGAAACTTACG+CGG - chr4_1:63766686-63766705 None:intergenic 35.0%
!! TTTTTCAATTTCGTTGGCCA+TGG + chr4_1:63766721-63766740 Msa0563390:intron 35.0%
TGGCCATGGAATAGAATTAT+TGG + chr4_1:63766735-63766754 Msa0563390:intron 35.0%
CCCAAAAACACTTAACTAGA+AGG - chr4_1:63766981-63767000 None:intergenic 35.0%
GTTATGTTTGCCTAACCATT+TGG + chr4_1:63767049-63767068 Msa0563390:intron 35.0%
GTTGCTATAACCATTCCAAA+TGG - chr4_1:63767067-63767086 None:intergenic 35.0%
TTGCGAAGTTAATAGATAGG+TGG + chr4_1:63767221-63767240 Msa0563390:intron 35.0%
CTAGTCTCTTACATTCCTAT+AGG - chr4_1:63767522-63767541 None:intergenic 35.0%
! ACCGTGGTGGAAAATAAAAA+AGG + chr4_1:63767793-63767812 Msa0563390:intron 35.0%
!! GGGAATATTTTCTCTGGTTT+AGG - chr4_1:63767866-63767885 None:intergenic 35.0%
AAGTATACTGATAGGACACT+TGG - chr4_1:63768078-63768097 None:intergenic 35.0%
GTAACCAATAGATACTTAGG+TGG - chr4_1:63768176-63768195 None:intergenic 35.0%
CGTGTAACCAATAGATACTT+AGG - chr4_1:63768179-63768198 None:intergenic 35.0%
TGAGCACAAATTTAATACGG+TGG - chr4_1:63768223-63768242 None:intergenic 35.0%
! TCACAATTTTCTCTTCATCC+AGG + chr4_1:63768288-63768307 Msa0563390:intron 35.0%
ACCTATGACTATGACACTTA+GGG - chr4_1:63768596-63768615 None:intergenic 35.0%
AACCTATGACTATGACACTT+AGG - chr4_1:63768597-63768616 None:intergenic 35.0%
GAAAAAGAAGCAAACACAAC+AGG - chr4_1:63768671-63768690 None:intergenic 35.0%
! TGTTTGCTTCTTTTTCTGCT+GGG + chr4_1:63768675-63768694 Msa0563390:CDS 35.0%
! GAAGTTGTGTATGTCTTTTG+GGG + chr4_1:63768776-63768795 Msa0563390:intron 35.0%
TTCACTAAGCTGCATTTGTA+TGG - chr4_1:63768827-63768846 None:intergenic 35.0%
ATACAAATGCAGCTTAGTGA+AGG + chr4_1:63768826-63768845 Msa0563390:intron 35.0%
! AATTGCATTACCAAGTTGAG+TGG - chr4_1:63768865-63768884 None:intergenic 35.0%
ATCAATCAAAGTAGAAAGCG+AGG - chr4_1:63768894-63768913 None:intergenic 35.0%
GCTTTCTACTTTGATTGATG+TGG + chr4_1:63768895-63768914 Msa0563390:intron 35.0%
AGCATGACTGTCAATTGTTT+AGG + chr4_1:63768969-63768988 Msa0563390:intron 35.0%
TTGTTTAGGAACTGTGTTTC+TGG + chr4_1:63768983-63769002 Msa0563390:CDS 35.0%
! ACCATCAAAGCTTGTTTCTT+GGG + chr4_1:63769093-63769112 Msa0563390:CDS 35.0%
AATCTCAATCAGCTGATCAT+TGG + chr4_1:63769167-63769186 Msa0563390:CDS 35.0%
AGTAATCTATCTTGACCATC+TGG + chr4_1:63769214-63769233 Msa0563390:intron 35.0%
GAATGTTTAGTGCCATGTTT+CGG + chr4_1:63769236-63769255 Msa0563390:intron 35.0%
! TTTTCGTGAATACGTTGACA+CGG - chr4_1:63769604-63769623 None:intergenic 35.0%
ATACTTGAACGAGAAAGAAC+TGG + chr4_1:63769627-63769646 Msa0563390:CDS 35.0%
!!! AGTTTTAGAAGAGTTGCAGT+GGG + chr4_1:63769723-63769742 Msa0563390:CDS 35.0%
TGTGTTCCAAAGAATGTTGA+AGG + chr4_1:63769906-63769925 Msa0563390:CDS 35.0%
TTCCAAAGAATGTTGAAGGT+TGG + chr4_1:63769910-63769929 Msa0563390:CDS 35.0%
TCCAAAGAATGTTGAAGGTT+GGG + chr4_1:63769911-63769930 Msa0563390:CDS 35.0%
! TGGGATGATGTGAAATTTTG+TGG + chr4_1:63769930-63769949 Msa0563390:CDS 35.0%
! GGGATGATGTGAAATTTTGT+GGG + chr4_1:63769931-63769950 Msa0563390:CDS 35.0%
! AAATTTTGTGGGAATCGGAA+TGG + chr4_1:63769942-63769961 Msa0563390:CDS 35.0%
! AATTTTGTGGGAATCGGAAT+GGG + chr4_1:63769943-63769962 Msa0563390:CDS 35.0%
! TCCTGAATTTTACGAGACAA+AGG + chr4_1:63770080-63770099 Msa0563390:three_prime_UTR 35.0%
TCCTTTGTCTCGTAAAATTC+AGG - chr4_1:63770084-63770103 None:intergenic 35.0%
! TGAATTTTACGAGACAAAGG+AGG + chr4_1:63770083-63770102 Msa0563390:three_prime_UTR 35.0%
!! ATAGATTTTGGTGCAACAGT+GGG + chr4_1:63770117-63770136 Msa0563390:three_prime_UTR 35.0%
AATTGTTGTCACTCAGAAAG+GGG + chr4_1:63770289-63770308 Msa0563390:three_prime_UTR 35.0%
!!! TTTTTGACAATTCTGAGGTG+AGG + chr4_1:63770430-63770449 Msa0563390:three_prime_UTR 35.0%
GAATAAATAGGCCATGTTTG+AGG + chr4_1:63770501-63770520 Msa0563390:three_prime_UTR 35.0%
!! GAGTTTGACAGAAGTTGATA+TGG + chr4_1:63770607-63770626 Msa0563390:three_prime_UTR 35.0%
AATTCACGTGTTTCGCTTAC+TGG + chr4_1:63766450-63766469 Msa0563390:five_prime_UTR 40.0%
ATTCACGTGTTTCGCTTACT+GGG + chr4_1:63766451-63766470 Msa0563390:five_prime_UTR 40.0%
AGTTCCACAAAACCTGTTAC+AGG + chr4_1:63766597-63766616 Msa0563390:CDS 40.0%
GTTGACCTTTACTCCTCTTT+GGG + chr4_1:63766625-63766644 Msa0563390:CDS 40.0%
!! GGTTGATAGATTGATGGGTT+TGG + chr4_1:63766765-63766784 Msa0563390:intron 40.0%
GTTTGCCTAACCATTTGGAA+TGG + chr4_1:63767054-63767073 Msa0563390:intron 40.0%
! AACATGCAAAGCATCATCCA+AGG - chr4_1:63767098-63767117 None:intergenic 40.0%
TCAAACGTTTGATCGTATGC+TGG + chr4_1:63767142-63767161 Msa0563390:intron 40.0%
AAGTTACTCCAAAGATTGGG+TGG + chr4_1:63767314-63767333 Msa0563390:intron 40.0%
AGTTACTCCAAAGATTGGGT+GGG + chr4_1:63767315-63767334 Msa0563390:intron 40.0%
TTACTAACCCACCCAATCTT+TGG - chr4_1:63767325-63767344 None:intergenic 40.0%
TGAATCTTGTAAGACAGCCA+TGG + chr4_1:63767451-63767470 Msa0563390:intron 40.0%
GTTAGAAGTTCTCGAAACTC+TGG - chr4_1:63767829-63767848 None:intergenic 40.0%
! GGTTAGGGGAATATTTTCTC+TGG - chr4_1:63767872-63767891 None:intergenic 40.0%
AGAGGATGAGTTAGTTAGTG+AGG - chr4_1:63767960-63767979 None:intergenic 40.0%
TACACCAAACCAATGAGTCA+AGG - chr4_1:63768246-63768265 None:intergenic 40.0%
!! GGTTTGGTGTACAATACTGA+TGG + chr4_1:63768255-63768274 Msa0563390:intron 40.0%
AAAATGCTAACAAGCACCCT+TGG + chr4_1:63768438-63768457 Msa0563390:intron 40.0%
AAATGCTAACAAGCACCCTT+GGG + chr4_1:63768439-63768458 Msa0563390:intron 40.0%
! GTGTTTGCTTCTTTTTCTGC+TGG + chr4_1:63768674-63768693 Msa0563390:CDS 40.0%
! TGATGTGGTTTTCTACATCG+CGG + chr4_1:63768910-63768929 Msa0563390:intron 40.0%
! AGAAACAAGCTTTGATGGTC+CGG - chr4_1:63769092-63769111 None:intergenic 40.0%
! GACCATCAAAGCTTGTTTCT+TGG + chr4_1:63769092-63769111 Msa0563390:CDS 40.0%
! ACCCAAGAAACAAGCTTTGA+TGG - chr4_1:63769097-63769116 None:intergenic 40.0%
AAAGTCTGTTGCATCTGGTT+TGG + chr4_1:63769120-63769139 Msa0563390:CDS 40.0%
ATGGCACTAAACATTCCAGA+TGG - chr4_1:63769232-63769251 None:intergenic 40.0%
TGTGAGCCATTTATTGGAGA+AGG + chr4_1:63769578-63769597 Msa0563390:CDS 40.0%
! CGAGAAAGAACTGGTATTGA+TGG + chr4_1:63769636-63769655 Msa0563390:CDS 40.0%
!!! GAGTTTTAGAAGAGTTGCAG+TGG + chr4_1:63769722-63769741 Msa0563390:CDS 40.0%
CTGAACTAGGCAAAAAGAAG+TGG - chr4_1:63769758-63769777 None:intergenic 40.0%
! TTCTTTTTGCCTAGTTCAGC+AGG + chr4_1:63769759-63769778 Msa0563390:CDS 40.0%
TTGTTATGTCCTGCTGAACT+AGG - chr4_1:63769771-63769790 None:intergenic 40.0%
! ATAGAGAATCTGGGATTCCA+CGG + chr4_1:63769796-63769815 Msa0563390:CDS 40.0%
CGTCAAAAAGAAATTGCCCA+AGG - chr4_1:63769884-63769903 None:intergenic 40.0%
TCCCAACCTTCAACATTCTT+TGG - chr4_1:63769915-63769934 None:intergenic 40.0%
!! GATAGATTTTGGTGCAACAG+TGG + chr4_1:63770116-63770135 Msa0563390:three_prime_UTR 40.0%
GGTTGCGATGATTCAACTAT+CGG + chr4_1:63770171-63770190 Msa0563390:three_prime_UTR 40.0%
GTTGCGATGATTCAACTATC+GGG + chr4_1:63770172-63770191 Msa0563390:three_prime_UTR 40.0%
AACTGGGTGATGTTTGACTA+AGG + chr4_1:63770340-63770359 Msa0563390:three_prime_UTR 40.0%
!! ACAGAAGTTGATATGGCGTA+TGG + chr4_1:63770614-63770633 Msa0563390:three_prime_UTR 40.0%
TCTCATATCATCGCTATGCG+TGG + chr4_1:63766478-63766497 Msa0563390:exon 45.0%
GGTCAACGAATTCCTGTAAC+AGG - chr4_1:63766612-63766631 None:intergenic 45.0%
CGTTGACCTTTACTCCTCTT+TGG + chr4_1:63766624-63766643 Msa0563390:CDS 45.0%
AAGAGAATTCCAGCCCAAAG+AGG - chr4_1:63766641-63766660 None:intergenic 45.0%
!! GATGGGTTTGGTGTTACTTG+TGG + chr4_1:63766777-63766796 Msa0563390:intron 45.0%
!! GGTTTGGTGTTACTTGTGGA+TGG + chr4_1:63766781-63766800 Msa0563390:intron 45.0%
TTGCCTTAAGCTTGTGAGAG+AGG + chr4_1:63767008-63767027 Msa0563390:intron 45.0%
! AACTATATGCTGGTCTGCTC+TGG + chr4_1:63767255-63767274 Msa0563390:intron 45.0%
AAGTGTTCCAGCTGAATCCA+TGG - chr4_1:63767471-63767490 None:intergenic 45.0%
!! GGTTTAGGAGCATTTAGCTC+TGG - chr4_1:63767851-63767870 None:intergenic 45.0%
TGTGCACCAATCTCATGTGA+GGG - chr4_1:63767937-63767956 None:intergenic 45.0%
TGCACGAAGGGAAAAAAGGT+GGG - chr4_1:63767992-63768011 None:intergenic 45.0%
TTGCACGAAGGGAAAAAAGG+TGG - chr4_1:63767993-63768012 None:intergenic 45.0%
GGTTTGCACGAAGGGAAAAA+AGG - chr4_1:63767996-63768015 None:intergenic 45.0%
! TTCTGGAAGGTTTGCACGAA+GGG - chr4_1:63768004-63768023 None:intergenic 45.0%
TTGTGCTCACCTTGACTCAT+TGG + chr4_1:63768234-63768253 Msa0563390:intron 45.0%
! CTCACCTTGACTCATTGGTT+TGG + chr4_1:63768239-63768258 Msa0563390:intron 45.0%
CTCTTCATCCAGGTTCAATG+AGG + chr4_1:63768298-63768317 Msa0563390:intron 45.0%
CAGGTTCAATGAGGAAAGTG+CGG + chr4_1:63768307-63768326 Msa0563390:intron 45.0%
AATGCTAACAAGCACCCTTG+GGG + chr4_1:63768440-63768459 Msa0563390:intron 45.0%
CTTCTAAACAAGTGCCCCAA+GGG - chr4_1:63768457-63768476 None:intergenic 45.0%
ACTTCTAAACAAGTGCCCCA+AGG - chr4_1:63768458-63768477 None:intergenic 45.0%
GCCCTAAGTGTCATAGTCAT+AGG + chr4_1:63768592-63768611 Msa0563390:intron 45.0%
! AAGATTGCTTTGGGTTACGC+AGG + chr4_1:63768625-63768644 Msa0563390:intron 45.0%
GAAGCAAACACAACAGGACA+TGG - chr4_1:63768665-63768684 None:intergenic 45.0%
! TGGAAGGGTGTAGAGAAAAG+CGG - chr4_1:63769057-63769076 None:intergenic 45.0%
! GAAACAAGCTTTGATGGTCC+GGG - chr4_1:63769091-63769110 None:intergenic 45.0%
GTAGCAAAGTCTGTTGCATC+TGG + chr4_1:63769115-63769134 Msa0563390:CDS 45.0%
TCAATCAGCTGATCATTGGC+AGG + chr4_1:63769171-63769190 Msa0563390:CDS 45.0%
ACAGCAGCTCTGTATTGGAT+TGG - chr4_1:63769561-63769580 None:intergenic 45.0%
AGCTGCTGTGAGCCATTTAT+TGG + chr4_1:63769572-63769591 Msa0563390:CDS 45.0%
ACACGGCCTTCTCCAATAAA+TGG - chr4_1:63769587-63769606 None:intergenic 45.0%
GGCAAAAAGAAGTGGTCACT+TGG - chr4_1:63769750-63769769 None:intergenic 45.0%
! TAGAGAATCTGGGATTCCAC+GGG + chr4_1:63769797-63769816 Msa0563390:CDS 45.0%
! TCACGTGTGTCACCTTTTAG+AGG + chr4_1:63769969-63769988 Msa0563390:CDS 45.0%
! TTAAACGCATTGGTCGCTCT+AGG + chr4_1:63769994-63770013 Msa0563390:CDS 45.0%
CACTGCCAGATACGATACAA+TGG - chr4_1:63770147-63770166 None:intergenic 45.0%
TATCGTATCTGGCAGTGCAA+TGG + chr4_1:63770150-63770169 Msa0563390:three_prime_UTR 45.0%
GACTAAGGTAACTACTCCGT+AGG + chr4_1:63770355-63770374 Msa0563390:three_prime_UTR 45.0%
ATCGCTATGCGTGGAGTTGA+AGG + chr4_1:63766487-63766506 Msa0563390:exon 50.0%
GTAGATGTTACCGCCTCGTA+CGG - chr4_1:63766518-63766537 None:intergenic 50.0%
TACGAGGCGGTAACATCTAC+TGG + chr4_1:63766518-63766537 Msa0563390:CDS 50.0%
ACGAGGCGGTAACATCTACT+GGG + chr4_1:63766519-63766538 Msa0563390:CDS 50.0%
ACCTTTACTCCTCTTTGGGC+TGG + chr4_1:63766629-63766648 Msa0563390:CDS 50.0%
TCCAGCCCAAAGAGGAGTAA+AGG - chr4_1:63766633-63766652 None:intergenic 50.0%
GCTCCTCTCTCACAAGCTTA+AGG - chr4_1:63767014-63767033 None:intergenic 50.0%
TCTGCTCTGGCAACTTGAAC+AGG + chr4_1:63767268-63767287 Msa0563390:intron 50.0%
CTGCTCTGGCAACTTGAACA+GGG + chr4_1:63767269-63767288 Msa0563390:intron 50.0%
TGCTCTGGCAACTTGAACAG+GGG + chr4_1:63767270-63767289 Msa0563390:intron 50.0%
AAGACAGCCATGGATTCAGC+TGG + chr4_1:63767461-63767480 Msa0563390:intron 50.0%
GGATTCAGCTGGAACACTTG+TGG + chr4_1:63767472-63767491 Msa0563390:intron 50.0%
TTCAGCTGGAACACTTGTGG+AGG + chr4_1:63767475-63767494 Msa0563390:intron 50.0%
TCAGCTGGAACACTTGTGGA+GGG + chr4_1:63767476-63767495 Msa0563390:intron 50.0%
CAATCTCATGTGAGGGGGTT+GGG - chr4_1:63767930-63767949 None:intergenic 50.0%
TGCACCAATCTCATGTGAGG+GGG - chr4_1:63767935-63767954 None:intergenic 50.0%
GTGCACCAATCTCATGTGAG+GGG - chr4_1:63767936-63767955 None:intergenic 50.0%
GTGTGCACCAATCTCATGTG+AGG - chr4_1:63767938-63767957 None:intergenic 50.0%
AGGGAAAAAAGGTGGGGCAA+GGG - chr4_1:63767985-63768004 None:intergenic 50.0%
AAGGGAAAAAAGGTGGGGCA+AGG - chr4_1:63767986-63768005 None:intergenic 50.0%
GCACGAAGGGAAAAAAGGTG+GGG - chr4_1:63767991-63768010 None:intergenic 50.0%
! CTTCTGGAAGGTTTGCACGA+AGG - chr4_1:63768005-63768024 None:intergenic 50.0%
CCATGGTGAGCTAAGCAATG+GGG - chr4_1:63768046-63768065 None:intergenic 50.0%
CCCATGGTGAGCTAAGCAAT+GGG - chr4_1:63768047-63768066 None:intergenic 50.0%
CCCATTGCTTAGCTCACCAT+GGG + chr4_1:63768044-63768063 Msa0563390:intron 50.0%
! CTTAGCTCACCATGGGCTAT+AGG + chr4_1:63768051-63768070 Msa0563390:intron 50.0%
ACACTTGGACCTATAGCCCA+TGG - chr4_1:63768063-63768082 None:intergenic 50.0%
CGCACTTTCCTCATTGAACC+TGG - chr4_1:63768309-63768328 None:intergenic 50.0%
! TTTGGGTTACGCAGGTGCTA+AGG + chr4_1:63768633-63768652 Msa0563390:intron 50.0%
TTACGCAGGTGCTAAGGACT+AGG + chr4_1:63768639-63768658 Msa0563390:intron 50.0%
ATGCACAGCTCCACTCAACT+TGG + chr4_1:63768852-63768871 Msa0563390:CDS 50.0%
TTTCTACATCGCGGCCATTG+TGG + chr4_1:63768919-63768938 Msa0563390:intron 50.0%
! CGGGCACTTTTGCAATGGAA+GGG - chr4_1:63769072-63769091 None:intergenic 50.0%
!! CCTTCCATTGCAAAAGTGCC+CGG + chr4_1:63769070-63769089 Msa0563390:CDS 50.0%
CTGAGAAGCTCATCTCACGT+TGG + chr4_1:63769430-63769449 Msa0563390:CDS 50.0%
TCTTCTTTCTGTTCGTCCCG+TGG - chr4_1:63769816-63769835 None:intergenic 50.0%
! TGGGAAGCTAGGAGCACAAA+CGG - chr4_1:63769841-63769860 None:intergenic 50.0%
TTTGTGGGAATCGGAATGGG+AGG + chr4_1:63769946-63769965 Msa0563390:CDS 50.0%
!! ATTTTGGTGCAACAGTGGGC+CGG + chr4_1:63770121-63770140 Msa0563390:three_prime_UTR 50.0%
GCCAGATACGATACAATGGC+CGG - chr4_1:63770143-63770162 None:intergenic 50.0%
TTGTCACTCAGAAAGGGGAG+TGG + chr4_1:63770294-63770313 Msa0563390:three_prime_UTR 50.0%
GGGTGATGCTGAGTAGACAC+TGG - chr4_1:63766239-63766258 None:intergenic 55.0%
CGAGGCGGTAACATCTACTG+GGG + chr4_1:63766520-63766539 Msa0563390:CDS 55.0%
TGAGCTCAAGAGCTCTACCG+TGG + chr4_1:63767777-63767796 Msa0563390:intron 55.0%
!! AGGGGGTTGGGTAGTGGAAA+GGG - chr4_1:63767918-63767937 None:intergenic 55.0%
CCAATCTCATGTGAGGGGGT+TGG - chr4_1:63767931-63767950 None:intergenic 55.0%
CCAACCCCCTCACATGAGAT+TGG + chr4_1:63767928-63767947 Msa0563390:intron 55.0%
GGAAAAAAGGTGGGGCAAGG+GGG - chr4_1:63767983-63768002 None:intergenic 55.0%
GGGAAAAAAGGTGGGGCAAG+GGG - chr4_1:63767984-63768003 None:intergenic 55.0%
CGTGCAAACCTTCCAGAAGC+TGG + chr4_1:63768006-63768025 Msa0563390:intron 55.0%
CCCCATTGCTTAGCTCACCA+TGG + chr4_1:63768043-63768062 Msa0563390:intron 55.0%
GCCCATGGTGAGCTAAGCAA+TGG - chr4_1:63768048-63768067 None:intergenic 55.0%
!! TGAGGAAAGTGCGGTGCCAT+TGG + chr4_1:63768316-63768335 Msa0563390:CDS 55.0%
! CCGGGCACTTTTGCAATGGA+AGG - chr4_1:63769073-63769092 None:intergenic 55.0%
! TGGTCCGGGCACTTTTGCAA+TGG - chr4_1:63769077-63769096 None:intergenic 55.0%
GGCTCACAGCAGCTCTGTAT+TGG - chr4_1:63769566-63769585 None:intergenic 55.0%
! GGGAAGCTAGGAGCACAAAC+GGG - chr4_1:63769840-63769859 None:intergenic 55.0%
GCCGGCCATTGTATCGTATC+TGG + chr4_1:63770139-63770158 Msa0563390:three_prime_UTR 55.0%
GTTGAAGGCTGTGCCGTACG+AGG + chr4_1:63766502-63766521 Msa0563390:CDS 60.0%
GCTCAAGAGCTCTACCGTGG+TGG + chr4_1:63767780-63767799 Msa0563390:intron 60.0%
!! GGGGGTTGGGTAGTGGAAAG+GGG - chr4_1:63767917-63767936 None:intergenic 60.0%
!! GAGGGGGTTGGGTAGTGGAA+AGG - chr4_1:63767919-63767938 None:intergenic 60.0%
CATGTGAGGGGGTTGGGTAG+TGG - chr4_1:63767924-63767943 None:intergenic 60.0%
AGCACGAGCCAGCTTCTGGA+AGG - chr4_1:63768017-63768036 None:intergenic 60.0%
!! TTCCAGAAGCTGGCTCGTGC+TGG + chr4_1:63768016-63768035 Msa0563390:intron 60.0%
AACCAGCACGAGCCAGCTTC+TGG - chr4_1:63768021-63768040 None:intergenic 60.0%
! GCGCTGATGCTTGGGAAGCT+AGG - chr4_1:63769852-63769871 None:intergenic 60.0%
!! CGCTGTGAGCGCTGATGCTT+GGG - chr4_1:63769860-63769879 None:intergenic 60.0%
!! ACGCTGTGAGCGCTGATGCT+TGG - chr4_1:63769861-63769880 None:intergenic 60.0%
ATCAGCGCTCACAGCGTCCT+TGG + chr4_1:63769864-63769883 Msa0563390:CDS 60.0%
TCAGCGCTCACAGCGTCCTT+GGG + chr4_1:63769865-63769884 Msa0563390:CDS 60.0%
GAAGGCTGTGCCGTACGAGG+CGG + chr4_1:63766505-63766524 Msa0563390:CDS 65.0%
AAAGGTGGGGCAAGGGGGAG+AGG - chr4_1:63767978-63767997 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 63766192 63770639 63766192 ID=Msa0563390;Name=Msa0563390
chr4_1 mRNA 63766192 63770639 63766192 ID=Msa0563390-mRNA-1;Parent=Msa0563390;Name=Msa0563390-mRNA-1;_AED=0.20;_eAED=0.20;_QI=301|1|1|1|1|1|7|617|410
chr4_1 exon 63766192 63766686 63766192 ID=Msa0563390-mRNA-1:exon:20298;Parent=Msa0563390-mRNA-1
chr4_1 exon 63768310 63768367 63768310 ID=Msa0563390-mRNA-1:exon:20299;Parent=Msa0563390-mRNA-1
chr4_1 exon 63768647 63768727 63768647 ID=Msa0563390-mRNA-1:exon:20300;Parent=Msa0563390-mRNA-1
chr4_1 exon 63768838 63768873 63768838 ID=Msa0563390-mRNA-1:exon:20301;Parent=Msa0563390-mRNA-1
chr4_1 exon 63768971 63769210 63768971 ID=Msa0563390-mRNA-1:exon:20302;Parent=Msa0563390-mRNA-1
chr4_1 exon 63769310 63769451 63769310 ID=Msa0563390-mRNA-1:exon:20303;Parent=Msa0563390-mRNA-1
chr4_1 exon 63769541 63770639 63769541 ID=Msa0563390-mRNA-1:exon:20304;Parent=Msa0563390-mRNA-1
chr4_1 five_prime_UTR 63766192 63766492 63766192 ID=Msa0563390-mRNA-1:five_prime_utr;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63766493 63766686 63766493 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63768310 63768367 63768310 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63768647 63768727 63768647 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63768838 63768873 63768838 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63768971 63769210 63768971 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63769310 63769451 63769310 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 CDS 63769541 63770022 63769541 ID=Msa0563390-mRNA-1:cds;Parent=Msa0563390-mRNA-1
chr4_1 three_prime_UTR 63770023 63770639 63770023 ID=Msa0563390-mRNA-1:three_prime_utr;Parent=Msa0563390-mRNA-1
Gene Sequence

>Msa0563390

ATGCGTGGAGTTGAAGGCTGTGCCGTACGAGGCGGTAACATCTACTGGGGAAGAAAACACGACACTGATTTCAAAGGAATCGTTGTAATCTTTGCTTGGGTTTCAGTTCCACAAAACCTGTTACAGGAATTCGTTGACCTTTACTCCTCTTTGGGCTGGAATTCTCTTGTTTGTTATGCTCATTATCTATCCGCGTTCAATGAGGAAAGTGCGGTGCCATTGGCATTTTATGTTTTTGATGAACTTATTGAGGTGCTAAGGACTAGGCCATGTCCTGTTGTGTTTGCTTCTTTTTCTGCTGGGTCGAAAGCCTGTCTGTACAAATTATTTCAGCTTAGTGAAGGAAGATGCACAGCTCCACTCAACTTGCATGACTGTCAATTGTTTAGGAACTGTGTTTCTGGACATATATATGATTCTGGTCCACTAGATGTTACAAGTGATTTTGGCTTCCGCTTTTCTCTACACCCTTCCATTGCAAAAGTGCCCGGACCATCAAAGCTTGTTTCTTGGGTAGCAAAGTCTGTTGCATCTGGTTTGGATGCTTTATACTTGACTAGATTTGAATCTCAATCAGCTGATCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGGGCTCCATTTCTCATTTTATGTTCGGAGAATGATGAACTTGTGAGATATCAAAGTATCTATGATTTTGCTCAACGATTACGCAATCTCAACGCTGATGTCAATCTTGTAAATCTGAGAAGCTCATCTCACGTTGGTCATTATGAACATCATCCAATCCAATACAGAGCTGCTGTGAGCCATTTATTGGAGAAGGCCGTGTCAACGTATTCACGAAAAGTTATACTTGAACGAGAAAGAACTGGTATTGATGGTACGCACGACGAGATATCTGAGTTAATCTGTGACCTGCAGAAAGTTGCAATTAATTCAAATGAGAGTTTTAGAAGAGTTGCAGTGGGACCAAGTGACCACTTCTTTTTGCCTAGTTCAGCAGGACATAACAACAATGATAGAGAATCTGGGATTCCACGGGACGAACAGAAAGAAGAACCCGTTTGTGCTCCTAGCTTCCCAAGCATCAGCGCTCACAGCGTCCTTGGGCAATTTCTTTTTGACGTTTGTGTTCCAAAGAATGTTGAAGGTTGGGATGATGTGAAATTTTGTGGGAATCGGAATGGGAGGTCACGTGTGTCACCTTTTAGAGGAATTAAACGCATTGGTCGCTCTAGGTTATGA
Protein sequence

>Msa0563390

MRGVEGCAVRGGNIYWGRKHDTDFKGIVVIFAWVSVPQNLLQEFVDLYSSLGWNSLVCYAHYLSAFNEESAVPLAFYVFDELIEVLRTRPCPVVFASFSAGSKACLYKLFQLSEGRCTAPLNLHDCQLFRNCVSGHIYDSGPLDVTSDFGFRFSLHPSIAKVPGPSKLVSWVAKSVASGLDALYLTRFESQSADHWQALYSSVNFGAPFLILCSENDELVRYQSIYDFAQRLRNLNADVNLVNLRSSSHVGHYEHHPIQYRAAVSHLLEKAVSTYSRKVILERERTGIDGTHDEISELICDLQKVAINSNESFRRVAVGPSDHFFLPSSAGHNNNDRESGIPRDEQKEEPVCAPSFPSISAHSVLGQFLFDVCVPKNVEGWDDVKFCGNRNGRSRVSPFRGIKRIGRSRL*